AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1034830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1034830 MtrunA17_Chr7g0258011 98.276 348 5 1 1 348 1 347 0.0 716
Msa1034830 MtrunA17_Chr1g0173841 73.179 302 55 6 66 348 92 386 3.81e-157 446
Msa1034830 MtrunA17_Chr8g0352011 63.103 290 90 4 66 346 54 335 5.41e-130 375
Msa1034830 MtrunA17_Chr2g0328921 66.084 286 75 5 67 348 44 311 9.69e-130 373
Msa1034830 MtrunA17_Chr2g0321291 61.943 247 81 4 103 348 71 305 1.73e-109 322
Msa1034830 MtrunA17_Chr5g0422571 67.421 221 48 4 119 337 64 262 1.32e-104 309
Msa1034830 MtrunA17_Chr4g0026521 75.568 176 40 1 174 346 115 290 2.90e-102 303
Msa1034830 MtrunA17_Chr1g0198651 75.000 172 40 1 174 342 99 270 2.29e-97 290
Msa1034830 MtrunA17_Chr4g0053341 64.762 210 50 3 119 328 40 225 1.04e-93 279
Msa1034830 MtrunA17_Chr1g0200421 38.667 150 82 5 184 326 245 391 2.57e-25 106
Msa1034830 MtrunA17_Chr2g0320341 36.913 149 87 3 184 325 238 386 1.32e-22 97.8
Msa1034830 MtrunA17_Chr1g0181381 32.558 172 99 5 177 347 54 209 1.30e-21 95.5
Msa1034830 MtrunA17_Chr7g0268961 32.558 172 92 6 178 342 33 187 3.37e-21 94.4
Msa1034830 MtrunA17_Chr1g0191991 34.161 161 86 6 184 342 86 228 3.81e-21 94.4
Msa1034830 MtrunA17_Chr4g0029521 33.540 161 90 5 184 343 61 205 3.99e-21 94.4
Msa1034830 MtrunA17_Chr1g0151351 34.146 164 89 6 182 343 62 208 4.23e-21 94.0
Msa1034830 MtrunA17_Chr1g0185121 35.032 157 83 6 182 336 61 200 4.80e-21 93.6
Msa1034830 MtrunA17_Chr1g0199101 33.951 162 87 7 177 336 63 206 1.17e-20 92.8
Msa1034830 MtrunA17_Chr1g0210821 33.540 161 89 6 177 336 60 203 1.52e-20 92.8
Msa1034830 MtrunA17_Chr1g0162971 35.065 154 82 6 184 336 64 200 1.79e-20 92.0
Msa1034830 MtrunA17_Chr8g0342421 33.333 159 86 6 184 340 85 225 2.32e-20 92.0
Msa1034830 MtrunA17_Chr2g0330171 32.716 162 89 6 177 336 62 205 3.76e-20 91.3
Msa1034830 MtrunA17_Chr1g0163001 33.333 162 90 6 177 337 59 203 6.42e-20 90.9
Msa1034830 MtrunA17_Chr2g0326381 35.971 139 80 4 184 321 55 185 1.11e-19 89.4
Msa1034830 MtrunA17_Chr8g0373541 33.548 155 85 5 184 337 56 193 2.30e-19 89.0
Msa1034830 MtrunA17_Chr7g0263941 33.951 162 87 7 177 336 50 193 2.50e-19 88.2
Msa1034830 MtrunA17_Chr8g0382121 37.143 140 81 6 192 326 127 264 7.02e-19 85.9
Msa1034830 MtrunA17_Chr4g0040571 31.395 172 100 5 177 347 55 209 1.04e-18 87.0
Msa1034830 MtrunA17_Chr3g0123941 36.025 161 93 7 192 348 139 293 2.17e-18 84.7
Msa1034830 MtrunA17_Chr2g0324991 34.507 142 83 5 177 316 8 141 6.26e-17 77.0
Msa1034830 MtrunA17_Chr3g0141431 32.117 137 85 3 182 317 43 172 3.61e-16 79.0
Msa1034830 MtrunA17_Chr8g0375521 30.986 142 87 5 182 320 48 181 2.41e-13 70.5
Msa1034830 MtrunA17_Chr6g0479921 30.822 146 89 6 182 324 50 186 1.06e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1034830 AT3G57670.1 61.818 385 96 8 4 348 3 376 8.40e-142 407
Msa1034830 AT1G51220.1 54.722 360 125 8 1 345 1 337 1.36e-124 361
Msa1034830 AT3G20880.1 56.923 325 107 8 45 345 95 410 1.83e-119 351
Msa1034830 AT1G13290.1 68.868 212 40 4 119 328 54 241 1.08e-102 305
Msa1034830 AT1G34790.1 64.159 226 72 1 119 344 83 299 3.83e-101 300
Msa1034830 AT1G08290.1 75.148 169 38 2 174 338 164 332 3.12e-96 289
Msa1034830 AT1G34370.3 38.816 152 81 5 184 326 28 176 2.97e-26 106
Msa1034830 AT1G34370.2 38.816 152 81 5 184 326 238 386 8.51e-26 108
Msa1034830 AT1G34370.1 38.816 152 81 5 184 326 238 386 8.51e-26 108
Msa1034830 AT5G22890.1 39.744 156 81 6 184 329 211 363 1.54e-23 100
Msa1034830 AT5G03150.1 33.333 165 93 5 184 347 76 224 6.14e-22 97.1
Msa1034830 AT1G55110.3 35.404 161 85 6 182 340 84 227 1.51e-21 95.5
Msa1034830 AT1G55110.1 35.404 161 85 6 182 340 84 227 1.51e-21 95.5
Msa1034830 AT1G55110.2 35.404 161 85 6 182 340 84 227 1.51e-21 95.5
Msa1034830 AT2G02070.2 33.540 161 89 5 177 336 68 211 1.88e-20 92.8
Msa1034830 AT2G02070.1 33.540 161 89 5 177 336 68 211 1.88e-20 92.8
Msa1034830 AT2G02080.1 33.974 156 85 5 182 336 75 213 3.07e-20 92.0
Msa1034830 AT2G02080.4 33.974 156 85 5 182 336 75 213 3.07e-20 92.0
Msa1034830 AT2G02080.5 33.974 156 85 5 182 336 75 213 3.07e-20 92.0
Msa1034830 AT2G02080.3 33.974 156 85 5 182 336 75 213 3.07e-20 92.0
Msa1034830 AT5G66730.1 35.032 157 82 7 182 336 53 191 3.12e-20 92.0
Msa1034830 AT1G14580.1 33.951 162 87 6 177 336 69 212 9.26e-20 90.5
Msa1034830 AT1G14580.2 33.951 162 87 6 177 336 69 212 9.26e-20 90.5
Msa1034830 AT1G14580.3 33.951 162 87 6 177 336 83 226 9.97e-20 90.5
Msa1034830 AT2G02080.6 34.641 153 82 5 185 336 1 136 1.68e-19 89.4
Msa1034830 AT2G02080.2 34.641 153 82 5 185 336 1 136 1.68e-19 89.4
Msa1034830 AT3G45260.2 35.065 154 83 5 184 336 62 199 3.03e-19 89.0
Msa1034830 AT3G45260.1 35.065 154 83 5 184 336 62 199 3.03e-19 89.0
Msa1034830 AT5G44160.2 31.515 165 95 5 184 347 21 168 1.15e-18 87.0
Msa1034830 AT5G60470.1 33.117 154 86 5 184 336 58 195 1.21e-18 87.0
Msa1034830 AT5G44160.1 31.515 165 95 5 184 347 60 207 1.33e-18 87.0
Msa1034830 AT5G60470.3 33.117 154 86 5 184 336 63 200 1.41e-18 87.0
Msa1034830 AT5G60470.2 33.117 154 86 5 184 336 67 204 1.42e-18 87.0
Msa1034830 AT4G02670.1 32.298 161 92 4 177 336 69 213 1.78e-18 86.3
Msa1034830 AT4G02670.2 32.298 161 92 4 177 336 71 215 1.91e-18 86.3
Msa1034830 AT3G50700.1 32.484 157 88 5 182 337 55 194 1.97e-18 86.3
Msa1034830 AT1G03840.2 32.298 161 91 6 177 336 55 198 3.36e-18 85.9
Msa1034830 AT1G03840.1 31.056 161 93 5 177 336 57 200 3.57e-18 85.9
Msa1034830 AT3G13810.5 31.677 161 93 5 177 336 81 225 1.35e-17 84.3
Msa1034830 AT3G13810.4 31.677 161 93 5 177 336 86 230 1.39e-17 84.3
Msa1034830 AT3G13810.1 31.677 161 93 5 177 336 86 230 1.39e-17 84.3
Msa1034830 AT3G13810.2 31.677 161 93 5 177 336 87 231 1.47e-17 84.0
Msa1034830 AT3G13810.6 31.677 161 93 5 177 336 67 211 1.57e-17 84.0
Msa1034830 AT3G13810.3 31.677 161 93 5 177 336 73 217 1.71e-17 84.0
Msa1034830 AT1G25250.3 29.496 139 88 5 182 317 54 185 1.80e-13 71.2
Msa1034830 AT1G25250.1 29.496 139 88 5 182 317 31 162 2.10e-13 70.9
Msa1034830 AT1G68130.1 30.935 139 85 5 182 317 62 192 3.83e-13 70.5

Find 86 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCAATTAATTAGCTTAAA+TGG 0.162327 7_1:+70491889 Msa1034830:three_prime_UTR
GATCAAGTGGGAACAGTTTA+TGG 0.219534 7_1:-70489442 None:intergenic
CAGGATTCATGGTTAATAAT+AGG 0.242177 7_1:+70489969 Msa1034830:CDS
TTCCATTTAAGCTAATTAAT+TGG 0.250212 7_1:-70491891 None:intergenic
AAAGATCATATCAAAGCTTT+TGG 0.279015 7_1:+70491723 Msa1034830:CDS
TGTGTACCTCTTAGAGATTC+AGG 0.283693 7_1:-70491438 None:intergenic
GGAAGTGGACATGCTGCTTA+TGG 0.286552 7_1:+70491744 Msa1034830:CDS
AGCAAATGTTCCAACATAAA+AGG 0.288527 7_1:-70491937 None:intergenic
GTTGGTGAGGATTCTTGTTC+AGG 0.320459 7_1:+70489950 Msa1034830:CDS
AAAAGAATTGTGGGAAGCTT+TGG 0.349652 7_1:+70491658 Msa1034830:CDS
GAAGAGAAAAGATTAGAGTA+AGG 0.352738 7_1:-70489497 None:intergenic
ATGATGATGGTAGTGGAAAA+AGG 0.354603 7_1:-70489627 None:intergenic
GGATTCTTGTTCAGGATTCA+TGG 0.360583 7_1:+70489958 Msa1034830:CDS
AAACCCTAGTGCTGCTGAAA+TGG 0.370039 7_1:+70489868 Msa1034830:CDS
GGCTTAACAAAGGACAATAT+TGG 0.383450 7_1:+70489990 Msa1034830:CDS
CCTTGTTACTGTTGTGCACC+AGG 0.388233 7_1:+70491483 Msa1034830:CDS
AGAGGTAGTTCTTCTCTTAG+AGG 0.403255 7_1:-70489677 None:intergenic
ACTCCTTCTCAGATTCTCAT+TGG 0.410986 7_1:+70490019 Msa1034830:CDS
TCTTTGAGAGGCTTTGCTCT+TGG 0.418075 7_1:-70491528 None:intergenic
GAAGTGGACATGCTGCTTAT+GGG 0.418215 7_1:+70491745 Msa1034830:CDS
ATTTCAGCAGCACTAGGGTT+TGG 0.419339 7_1:-70489866 None:intergenic
GATCTCTGAGGAGTTATTAG+AGG 0.433036 7_1:-70489906 None:intergenic
GAAGGGTTTGAATTTGAAGA+TGG 0.443053 7_1:-70489554 None:intergenic
TTCCCTTTCTTCTAAATCCA+TGG 0.448360 7_1:-70489786 None:intergenic
AGACCTTCCTTGCACTGCCA+TGG 0.468218 7_1:+70489769 Msa1034830:CDS
TGCCATGGATTTAGAAGAAA+GGG 0.480220 7_1:+70489784 Msa1034830:CDS
TCTTGCTCTACTTCAGAAGC+TGG 0.480582 7_1:-70491795 None:intergenic
AGGAGAAGGTGGTGAAGAAG+AGG 0.481051 7_1:-70489654 None:intergenic
CTAAGAGGTACACAACCAAC+AGG 0.486579 7_1:+70491447 Msa1034830:CDS
AGGAAATATGATGATGGTAG+TGG 0.492337 7_1:-70489634 None:intergenic
TTGTTGTGGTGGTGAAGAAA+AGG 0.494029 7_1:-70489593 None:intergenic
GAAGCCATTTCAGCAGCACT+AGG 0.500052 7_1:-70489872 None:intergenic
TCTTCTCTTAGAGGAGGAGA+AGG 0.501187 7_1:-70489668 None:intergenic
AAGAGAAAAGATTAGAGTAA+GGG 0.501589 7_1:-70489496 None:intergenic
GAACTCATGAAAAGAATTGT+GGG 0.503233 7_1:+70491649 Msa1034830:CDS
ATTAATTAGCTTAAATGGAA+AGG 0.508799 7_1:+70491894 Msa1034830:three_prime_UTR
AGAACTCATGAAAAGAATTG+TGG 0.519976 7_1:+70491648 Msa1034830:CDS
TTAGAAGAAAGGGAAGAAGA+TGG 0.524706 7_1:+70489794 Msa1034830:CDS
TTTATGTTGGAACATTTGCT+AGG 0.525943 7_1:+70491940 Msa1034830:three_prime_UTR
GTTACTGTTGCACTTCACAT+AGG 0.528079 7_1:+70489839 Msa1034830:CDS
ATGAGAATCTGAGAAGGAGT+AGG 0.530035 7_1:-70490016 None:intergenic
TGTTGTGGTGGTGAAGAAAA+GGG 0.533983 7_1:-70489592 None:intergenic
CATGCTGCTTATGGGTGTGA+TGG 0.534441 7_1:+70491753 Msa1034830:CDS
GTTGGAATTAGGCTTAAAAG+AGG 0.534675 7_1:-70489695 None:intergenic
CATGGATCACAGTACAGAAA+AGG 0.538411 7_1:+70491414 Msa1034830:CDS
CTGCCATGGATTTAGAAGAA+AGG 0.539425 7_1:+70489783 Msa1034830:CDS
AATCCATGGCAGTGCAAGGA+AGG 0.544023 7_1:-70489772 None:intergenic
AGGTATGGTTATTGTTGTTG+TGG 0.546230 7_1:-70489607 None:intergenic
GGTGGTGAAGAAAAGGGTGG+TGG 0.550176 7_1:-70489586 None:intergenic
AAGAAGAGGAAATATGATGA+TGG 0.552809 7_1:-70489640 None:intergenic
TATGGTTATTGTTGTTGTGG+TGG 0.558394 7_1:-70489604 None:intergenic
AAGCTTTGGTATTGTATCTG+TGG 0.559395 7_1:+70491672 Msa1034830:CDS
AAAGGTCCTGAATCTCTAAG+AGG 0.563513 7_1:+70491432 Msa1034830:CDS
ACACATTACAAGAGGAAACA+TGG 0.569309 7_1:+70491567 Msa1034830:CDS
ACAGGGCAAGAAAACTGAGT+TGG 0.573007 7_1:-70490043 None:intergenic
TGAGAATCTGAGAAGGAGTA+GGG 0.575360 7_1:-70490015 None:intergenic
TTCATCAAATAATATATCCA+TGG 0.575756 7_1:+70489466 Msa1034830:exon
AGTGTTCTAAAATCTTTGAG+AGG 0.584894 7_1:-70491540 None:intergenic
CTTGTTACTGTTGTGCACCA+GGG 0.585436 7_1:+70491484 Msa1034830:CDS
AGAGTAAGGGTTATCAGCCA+TGG 0.585920 7_1:-70489483 None:intergenic
TCTCTTAGAGGAGGAGAAGG+TGG 0.585932 7_1:-70489665 None:intergenic
AGAGAGTACAAGATGGCTGA+AGG 0.588675 7_1:-70489380 None:intergenic
GGTAGTTCTTCTCTTAGAGG+AGG 0.595867 7_1:-70489674 None:intergenic
CACTTCAAACACATTACAAG+AGG 0.601250 7_1:+70491559 Msa1034830:CDS
AAGCCATTTCAGCAGCACTA+GGG 0.602433 7_1:-70489871 None:intergenic
TCTAAATCCATGGCAGTGCA+AGG 0.604858 7_1:-70489776 None:intergenic
GGTAGCCTTAGCATTCCTGT+TGG 0.607467 7_1:-70491462 None:intergenic
TCAATGTTGTTTCTGCACCC+TGG 0.610178 7_1:-70491501 None:intergenic
AAGATGGCTGAAGGAAGTAG+TGG 0.613233 7_1:-70489371 None:intergenic
CACAACCAACAGGAATGCTA+AGG 0.613402 7_1:+70491457 Msa1034830:CDS
TTATTTGATGAAAGATCAAG+TGG 0.616076 7_1:-70489455 None:intergenic
ATCACTGATAAAGAACATGT+TGG 0.619011 7_1:+70489932 Msa1034830:CDS
CAATAGATATAACAACATGC+AGG 0.621278 7_1:+70490081 Msa1034830:CDS
GGACCAATGAGAATCTGAGA+AGG 0.626496 7_1:-70490022 None:intergenic
GTTAATAATAGGCTTAACAA+AGG 0.627528 7_1:+70489980 Msa1034830:CDS
TGATAAAGAACATGTTGGTG+AGG 0.633314 7_1:+70489937 Msa1034830:CDS
AGATCAACAAGAACATGAGG+TGG 0.635764 7_1:+70489739 Msa1034830:CDS
CATGTGTAGAAAATGTAGCA+AGG 0.640710 7_1:+70491602 Msa1034830:CDS
CCTGGTGCACAACAGTAACA+AGG 0.646997 7_1:-70491483 None:intergenic
TGAAGATCAACAAGAACATG+AGG 0.648021 7_1:+70489736 Msa1034830:CDS
TGGCTGAAGGAAGTAGTGGA+CGG 0.664653 7_1:-70489367 None:intergenic
GTGTGATGGATTTGAAGAAG+AGG 0.666362 7_1:+70491767 Msa1034830:CDS
TGTGGTGGTGAAGAAAAGGG+TGG 0.675317 7_1:-70489589 None:intergenic
CTGAAGGAAGTAGTGGACGG+TGG 0.680102 7_1:-70489364 None:intergenic
ATCAGTGATAGTGATCTCTG+AGG 0.722446 7_1:-70489918 None:intergenic
TATTTGATGAAAGATCAAGT+GGG 0.768776 7_1:-70489454 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGTTTTATATATATTAATT+TGG + chr7_1:70490589-70490608 Msa1034830:intron 10.0%
!!! ATTTATTTATTTTAATGATC+TGG - chr7_1:70490819-70490838 None:intergenic 10.0%
!! AATATAATTTAACTAAACTA+TGG - chr7_1:70490923-70490942 None:intergenic 10.0%
!!! TTTTAAACCTTGAATTATAA+AGG - chr7_1:70490187-70490206 None:intergenic 15.0%
!! ATAGCATATATTAATTTCAT+TGG + chr7_1:70490508-70490527 Msa1034830:intron 15.0%
!! TTCATCAAATAATATATCCA+TGG + chr7_1:70489466-70489485 Msa1034830:exon 20.0%
!! AATTTGAAGATGGAAAAATA+TGG - chr7_1:70489547-70489566 None:intergenic 20.0%
!!! TCATATTTTTCTTGTTTTGT+TGG - chr7_1:70489716-70489735 None:intergenic 20.0%
!! AAAAAATTTCTGTTCTATAC+AGG - chr7_1:70490785-70490804 None:intergenic 20.0%
!! AATTTAGAGATAGAAAAATG+TGG + chr7_1:70491009-70491028 Msa1034830:intron 20.0%
!! TTATTAATGTACAATCATGA+AGG - chr7_1:70491167-70491186 None:intergenic 20.0%
!!! TACCAATTAATTAGCTTAAA+TGG + chr7_1:70491889-70491908 Msa1034830:three_prime_UTR 20.0%
!! TTCCATTTAAGCTAATTAAT+TGG - chr7_1:70491894-70491913 None:intergenic 20.0%
!!! ATTAATTAGCTTAAATGGAA+AGG + chr7_1:70491894-70491913 Msa1034830:three_prime_UTR 20.0%
!!! TTTCTTTTTTCCTTTTATGT+TGG + chr7_1:70491927-70491946 Msa1034830:three_prime_UTR 20.0%
! TATTTGATGAAAGATCAAGT+GGG - chr7_1:70489457-70489476 None:intergenic 25.0%
! TTATTTGATGAAAGATCAAG+TGG - chr7_1:70489458-70489477 None:intergenic 25.0%
! AAGAGAAAAGATTAGAGTAA+GGG - chr7_1:70489499-70489518 None:intergenic 25.0%
! ATGGAAAAATATGGTTGAAT+TGG - chr7_1:70489538-70489557 None:intergenic 25.0%
!!! TTTCTTGTTTTGTTGGAATT+AGG - chr7_1:70489709-70489728 None:intergenic 25.0%
! GTTAATAATAGGCTTAACAA+AGG + chr7_1:70489980-70489999 Msa1034830:CDS 25.0%
! AGAAAGTTATTGACAGAAAA+GGG - chr7_1:70490266-70490285 None:intergenic 25.0%
! AAGAAAGTTATTGACAGAAA+AGG - chr7_1:70490267-70490286 None:intergenic 25.0%
! CAAAAAGAAAGAAATGAAAG+AGG - chr7_1:70490378-70490397 None:intergenic 25.0%
!! TTCTGAAGAAAGAAAAAAGA+AGG - chr7_1:70490462-70490481 None:intergenic 25.0%
! AGTTTAGTCAATCAAAGAAA+AGG - chr7_1:70490694-70490713 None:intergenic 25.0%
! TAAAAAATTGTTCCTCTTTG+TGG + chr7_1:70490842-70490861 Msa1034830:intron 25.0%
! ACTAAACTATGGAAAAAAGA+AGG - chr7_1:70490912-70490931 None:intergenic 25.0%
! TGAAGGACAAAGATTTAATT+TGG - chr7_1:70491150-70491169 None:intergenic 25.0%
!!! TGTTTTTATAGATGCATATG+TGG + chr7_1:70491388-70491407 Msa1034830:intron 25.0%
!! GTTTTTATAGATGCATATGT+GGG + chr7_1:70491389-70491408 Msa1034830:intron 25.0%
!! TTTTTATAGATGCATATGTG+GGG + chr7_1:70491390-70491409 Msa1034830:intron 25.0%
!! AAAGATCATATCAAAGCTTT+TGG + chr7_1:70491723-70491742 Msa1034830:CDS 25.0%
GAAGAGAAAAGATTAGAGTA+AGG - chr7_1:70489500-70489519 None:intergenic 30.0%
AAGAAGAGGAAATATGATGA+TGG - chr7_1:70489643-70489662 None:intergenic 30.0%
ATCACTGATAAAGAACATGT+TGG + chr7_1:70489932-70489951 Msa1034830:CDS 30.0%
CAGGATTCATGGTTAATAAT+AGG + chr7_1:70489969-70489988 Msa1034830:CDS 30.0%
!!! TGAAAGTTTTAGAGCAAACA+GGG - chr7_1:70490063-70490082 None:intergenic 30.0%
!!! TTGAAAGTTTTAGAGCAAAC+AGG - chr7_1:70490064-70490083 None:intergenic 30.0%
CAATAGATATAACAACATGC+AGG + chr7_1:70490081-70490100 Msa1034830:CDS 30.0%
TGAAACAAAACAGAAGAACA+AGG - chr7_1:70490152-70490171 None:intergenic 30.0%
CACACTTCCTTTATAATTCA+AGG + chr7_1:70490177-70490196 Msa1034830:intron 30.0%
! TCCTTGATTTGAACCATTAA+CGG + chr7_1:70490286-70490305 Msa1034830:intron 30.0%
GAAAGAAAAAAGAAGGAAAG+AGG - chr7_1:70490455-70490474 None:intergenic 30.0%
! AGCTAGTGTTAAATTTTGCA+TGG + chr7_1:70490567-70490586 Msa1034830:intron 30.0%
TCTCTCAGTATATATGAATC+AGG - chr7_1:70490644-70490663 None:intergenic 30.0%
ATTCATATATACTGAGAGAC+TGG + chr7_1:70490645-70490664 Msa1034830:intron 30.0%
TTCATATATACTGAGAGACT+GGG + chr7_1:70490646-70490665 Msa1034830:intron 30.0%
AGTCAATCAAAGAAAAGGAA+AGG - chr7_1:70490689-70490708 None:intergenic 30.0%
! TCAATGTAGTAAAAGGCATA+AGG - chr7_1:70490731-70490750 None:intergenic 30.0%
ACAGACTTCAATGTAGTAAA+AGG - chr7_1:70490738-70490757 None:intergenic 30.0%
AATTTCTGTTCTATACAGGT+GGG - chr7_1:70490781-70490800 None:intergenic 30.0%
AAATTTCTGTTCTATACAGG+TGG - chr7_1:70490782-70490801 None:intergenic 30.0%
ATTTGGATGGTATATTAGCA+TGG - chr7_1:70490886-70490905 None:intergenic 30.0%
AAAAAGAAGGCAAATTTGGA+TGG - chr7_1:70490899-70490918 None:intergenic 30.0%
TGGAAAAAAGAAGGCAAATT+TGG - chr7_1:70490903-70490922 None:intergenic 30.0%
! GTAGATCTTGATAATAAGGT+CGG - chr7_1:70491233-70491252 None:intergenic 30.0%
! CTCAGTAGATCTTGATAATA+AGG - chr7_1:70491237-70491256 None:intergenic 30.0%
! TTTTATAGATGCATATGTGG+GGG + chr7_1:70491391-70491410 Msa1034830:intron 30.0%
!! AGTGTTCTAAAATCTTTGAG+AGG - chr7_1:70491543-70491562 None:intergenic 30.0%
! CTACATTTTCTACACATGAA+TGG - chr7_1:70491600-70491619 None:intergenic 30.0%
AGAACTCATGAAAAGAATTG+TGG + chr7_1:70491648-70491667 Msa1034830:CDS 30.0%
GAACTCATGAAAAGAATTGT+GGG + chr7_1:70491649-70491668 Msa1034830:CDS 30.0%
! GTTCTGATTTTAAACACAAG+AGG + chr7_1:70491694-70491713 Msa1034830:CDS 30.0%
AGCAAATGTTCCAACATAAA+AGG - chr7_1:70491940-70491959 None:intergenic 30.0%
TTTATGTTGGAACATTTGCT+AGG + chr7_1:70491940-70491959 Msa1034830:three_prime_UTR 30.0%
GAAGGGTTTGAATTTGAAGA+TGG - chr7_1:70489557-70489576 None:intergenic 35.0%
! TATGGTTATTGTTGTTGTGG+TGG - chr7_1:70489607-70489626 None:intergenic 35.0%
! AGGTATGGTTATTGTTGTTG+TGG - chr7_1:70489610-70489629 None:intergenic 35.0%
!! ATGATGATGGTAGTGGAAAA+AGG - chr7_1:70489630-70489649 None:intergenic 35.0%
!! AGGAAATATGATGATGGTAG+TGG - chr7_1:70489637-70489656 None:intergenic 35.0%
GTTGGAATTAGGCTTAAAAG+AGG - chr7_1:70489698-70489717 None:intergenic 35.0%
TGAAGATCAACAAGAACATG+AGG + chr7_1:70489736-70489755 Msa1034830:CDS 35.0%
TGCCATGGATTTAGAAGAAA+GGG + chr7_1:70489784-70489803 Msa1034830:CDS 35.0%
TTCCCTTTCTTCTAAATCCA+TGG - chr7_1:70489789-70489808 None:intergenic 35.0%
TTAGAAGAAAGGGAAGAAGA+TGG + chr7_1:70489794-70489813 Msa1034830:CDS 35.0%
TGATAAAGAACATGTTGGTG+AGG + chr7_1:70489937-70489956 Msa1034830:CDS 35.0%
GGCTTAACAAAGGACAATAT+TGG + chr7_1:70489990-70490009 Msa1034830:CDS 35.0%
AAACAGAAGAACAAGGTCTT+TGG - chr7_1:70490145-70490164 None:intergenic 35.0%
ACCGTTAATGGTTCAAATCA+AGG - chr7_1:70490290-70490309 None:intergenic 35.0%
AAAAAGAAGGAAAGAGGTCA+AGG - chr7_1:70490449-70490468 None:intergenic 35.0%
! GCTATAACTCTAGAAGAAAG+AGG - chr7_1:70490493-70490512 None:intergenic 35.0%
! AGAAAAGGAAAGGTGTAGTA+AGG - chr7_1:70490679-70490698 None:intergenic 35.0%
GTATATTAGCATGGTTGGAT+TGG - chr7_1:70490877-70490896 None:intergenic 35.0%
CACTTCAAACACATTACAAG+AGG + chr7_1:70491559-70491578 Msa1034830:CDS 35.0%
ACACATTACAAGAGGAAACA+TGG + chr7_1:70491567-70491586 Msa1034830:CDS 35.0%
CATGTGTAGAAAATGTAGCA+AGG + chr7_1:70491602-70491621 Msa1034830:CDS 35.0%
AAAAGAATTGTGGGAAGCTT+TGG + chr7_1:70491658-70491677 Msa1034830:CDS 35.0%
! AAGCTTTGGTATTGTATCTG+TGG + chr7_1:70491672-70491691 Msa1034830:CDS 35.0%
!! CATATCAAAGCTTTTGGAAG+TGG + chr7_1:70491729-70491748 Msa1034830:CDS 35.0%
GATCAAGTGGGAACAGTTTA+TGG - chr7_1:70489445-70489464 None:intergenic 40.0%
! TGTTGTGGTGGTGAAGAAAA+GGG - chr7_1:70489595-70489614 None:intergenic 40.0%
! TTGTTGTGGTGGTGAAGAAA+AGG - chr7_1:70489596-70489615 None:intergenic 40.0%
!! GATGGTAGTGGAAAAAGGTA+TGG - chr7_1:70489625-70489644 None:intergenic 40.0%
AGAGGTAGTTCTTCTCTTAG+AGG - chr7_1:70489680-70489699 None:intergenic 40.0%
AGATCAACAAGAACATGAGG+TGG + chr7_1:70489739-70489758 Msa1034830:CDS 40.0%
CTGCCATGGATTTAGAAGAA+AGG + chr7_1:70489783-70489802 Msa1034830:CDS 40.0%
GTTACTGTTGCACTTCACAT+AGG + chr7_1:70489839-70489858 Msa1034830:CDS 40.0%
! GATCTCTGAGGAGTTATTAG+AGG - chr7_1:70489909-70489928 None:intergenic 40.0%
! ATCAGTGATAGTGATCTCTG+AGG - chr7_1:70489921-70489940 None:intergenic 40.0%
GGATTCTTGTTCAGGATTCA+TGG + chr7_1:70489958-70489977 Msa1034830:CDS 40.0%
TGAGAATCTGAGAAGGAGTA+GGG - chr7_1:70490018-70490037 None:intergenic 40.0%
ATGAGAATCTGAGAAGGAGT+AGG - chr7_1:70490019-70490038 None:intergenic 40.0%
ACTCCTTCTCAGATTCTCAT+TGG + chr7_1:70490019-70490038 Msa1034830:CDS 40.0%
AAGCATCAGAGAACCGTTAA+TGG - chr7_1:70490302-70490321 None:intergenic 40.0%
ATTAACGGTTCTCTGATGCT+TGG + chr7_1:70490301-70490320 Msa1034830:intron 40.0%
TCTGATGCTTGGATAGAAAG+AGG + chr7_1:70490312-70490331 Msa1034830:intron 40.0%
GGATGGTATATTAGCATGGT+TGG - chr7_1:70490882-70490901 None:intergenic 40.0%
CATGGATCACAGTACAGAAA+AGG + chr7_1:70491414-70491433 Msa1034830:CDS 40.0%
AAAGGTCCTGAATCTCTAAG+AGG + chr7_1:70491432-70491451 Msa1034830:CDS 40.0%
TGTGTACCTCTTAGAGATTC+AGG - chr7_1:70491441-70491460 None:intergenic 40.0%
!!! CTTTTGCTGTTAGAGGAGAT+TGG + chr7_1:70491625-70491644 Msa1034830:CDS 40.0%
!! GTGTGATGGATTTGAAGAAG+AGG + chr7_1:70491767-70491786 Msa1034830:CDS 40.0%
AAGATGGCTGAAGGAAGTAG+TGG - chr7_1:70489374-70489393 None:intergenic 45.0%
! AGAGAGTACAAGATGGCTGA+AGG - chr7_1:70489383-70489402 None:intergenic 45.0%
! GAGAGAGAGAGAGTACAAGA+TGG - chr7_1:70489390-70489409 None:intergenic 45.0%
AGAGTAAGGGTTATCAGCCA+TGG - chr7_1:70489486-70489505 None:intergenic 45.0%
!! AGAAAAGGGTGGTGGTTTTG+TGG - chr7_1:70489581-70489600 None:intergenic 45.0%
TCTTCTCTTAGAGGAGGAGA+AGG - chr7_1:70489671-70489690 None:intergenic 45.0%
GGTAGTTCTTCTCTTAGAGG+AGG - chr7_1:70489677-70489696 None:intergenic 45.0%
TCTAAATCCATGGCAGTGCA+AGG - chr7_1:70489779-70489798 None:intergenic 45.0%
ATTTCAGCAGCACTAGGGTT+TGG - chr7_1:70489869-70489888 None:intergenic 45.0%
! AAACCCTAGTGCTGCTGAAA+TGG + chr7_1:70489868-70489887 Msa1034830:CDS 45.0%
AAGCCATTTCAGCAGCACTA+GGG - chr7_1:70489874-70489893 None:intergenic 45.0%
! GTTGGTGAGGATTCTTGTTC+AGG + chr7_1:70489950-70489969 Msa1034830:CDS 45.0%
GGACCAATGAGAATCTGAGA+AGG - chr7_1:70490025-70490044 None:intergenic 45.0%
ACAGGGCAAGAAAACTGAGT+TGG - chr7_1:70490046-70490065 None:intergenic 45.0%
AGAAGCAGAAGCAGAAGCAA+TGG - chr7_1:70490227-70490246 None:intergenic 45.0%
TGGACTAAGAAGCCACAAAG+AGG - chr7_1:70490857-70490876 None:intergenic 45.0%
! CTAAGAGGTACACAACCAAC+AGG + chr7_1:70491447-70491466 Msa1034830:CDS 45.0%
CACAACCAACAGGAATGCTA+AGG + chr7_1:70491457-70491476 Msa1034830:CDS 45.0%
CTTGTTACTGTTGTGCACCA+GGG + chr7_1:70491484-70491503 Msa1034830:CDS 45.0%
!! TCAATGTTGTTTCTGCACCC+TGG - chr7_1:70491504-70491523 None:intergenic 45.0%
! TCTTTGAGAGGCTTTGCTCT+TGG - chr7_1:70491531-70491550 None:intergenic 45.0%
!!! AGCAAGGCTTTTGCTGTTAG+AGG + chr7_1:70491618-70491637 Msa1034830:CDS 45.0%
! GAAGTGGACATGCTGCTTAT+GGG + chr7_1:70491745-70491764 Msa1034830:CDS 45.0%
TCTTGCTCTACTTCAGAAGC+TGG - chr7_1:70491798-70491817 None:intergenic 45.0%
!!! TTTATTTTAAGAAATAATTT+TGG + chr7_1:70490541-70490560 Msa1034830:intron 5.0%
!!! TTATTTTAAGAAATAATTTT+GGG + chr7_1:70490542-70490561 Msa1034830:intron 5.0%
! TGGCTGAAGGAAGTAGTGGA+CGG - chr7_1:70489370-70489389 None:intergenic 50.0%
!!! GGTGGTGGTTTTGTGGAGAA+GGG - chr7_1:70489574-70489593 None:intergenic 50.0%
! TGTGGTGGTGAAGAAAAGGG+TGG - chr7_1:70489592-70489611 None:intergenic 50.0%
AGGAGAAGGTGGTGAAGAAG+AGG - chr7_1:70489657-70489676 None:intergenic 50.0%
TCTCTTAGAGGAGGAGAAGG+TGG - chr7_1:70489668-70489687 None:intergenic 50.0%
AATCCATGGCAGTGCAAGGA+AGG - chr7_1:70489775-70489794 None:intergenic 50.0%
GAAGCCATTTCAGCAGCACT+AGG - chr7_1:70489875-70489894 None:intergenic 50.0%
TAGATGCATATGTGGGGGCA+TGG + chr7_1:70491396-70491415 Msa1034830:intron 50.0%
! GGTAGCCTTAGCATTCCTGT+TGG - chr7_1:70491465-70491484 None:intergenic 50.0%
CCTGGTGCACAACAGTAACA+AGG - chr7_1:70491486-70491505 None:intergenic 50.0%
CCTTGTTACTGTTGTGCACC+AGG + chr7_1:70491483-70491502 Msa1034830:CDS 50.0%
! GGAAGTGGACATGCTGCTTA+TGG + chr7_1:70491744-70491763 Msa1034830:CDS 50.0%
! CATGCTGCTTATGGGTGTGA+TGG + chr7_1:70491753-70491772 Msa1034830:CDS 50.0%
!! CTGAAGGAAGTAGTGGACGG+TGG - chr7_1:70489367-70489386 None:intergenic 55.0%
!!! GGGTGGTGGTTTTGTGGAGA+AGG - chr7_1:70489575-70489594 None:intergenic 55.0%
GGTGGTGAAGAAAAGGGTGG+TGG - chr7_1:70489589-70489608 None:intergenic 55.0%
AGACCTTCCTTGCACTGCCA+TGG + chr7_1:70489769-70489788 Msa1034830:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 70489347 70491972 70489347 ID=Msa1034830;Name=Msa1034830
chr7_1 mRNA 70489347 70491972 70489347 ID=Msa1034830-mRNA-1;Parent=Msa1034830;Name=Msa1034830-mRNA-1;_AED=0.04;_eAED=0.04;_QI=138|1|1|1|1|1|2|145|348
chr7_1 exon 70489347 70490102 70489347 ID=Msa1034830-mRNA-1:exon:16881;Parent=Msa1034830-mRNA-1
chr7_1 exon 70491399 70491972 70491399 ID=Msa1034830-mRNA-1:exon:16882;Parent=Msa1034830-mRNA-1
chr7_1 five_prime_UTR 70489347 70489484 70489347 ID=Msa1034830-mRNA-1:five_prime_utr;Parent=Msa1034830-mRNA-1
chr7_1 CDS 70489485 70490102 70489485 ID=Msa1034830-mRNA-1:cds;Parent=Msa1034830-mRNA-1
chr7_1 CDS 70491399 70491827 70491399 ID=Msa1034830-mRNA-1:cds;Parent=Msa1034830-mRNA-1
chr7_1 three_prime_UTR 70491828 70491972 70491828 ID=Msa1034830-mRNA-1:three_prime_utr;Parent=Msa1034830-mRNA-1
Gene Sequence

>Msa1034830

ATGGCTGATAACCCTTACTCTAATCTTTTCTCTTCTTCTTCAAGTTTCTTCCAATTCAACCATATTTTTCCATCTTCAAATTCAAACCCTTCTCCACAAAACCACCACCCTTTTCTTCACCACCACAACAACAATAACCATACCTTTTTCCACTACCATCATCATATTTCCTCTTCTTCACCACCTTCTCCTCCTCTAAGAGAAGAACTACCTCTTTTAAGCCTAATTCCAACAAAACAAGAAAAATATGATGAAGATCAACAAGAACATGAGGTGGATATTCAAGACCTTCCTTGCACTGCCATGGATTTAGAAGAAAGGGAAGAAGATGGTAGTAGTAGTAGAACTACTACTGTTACTGTTGCACTTCACATAGGTTTACCAAACCCTAGTGCTGCTGAAATGGCTTCTGTACTTTCTTCCTCTAATAACTCCTCAGAGATCACTATCACTGATAAAGAACATGTTGGTGAGGATTCTTGTTCAGGATTCATGGTTAATAATAGGCTTAACAAAGGACAATATTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCAACTCAGTTTTCTTGCCCTGTTTGCTCTAAAACTTTCAATAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGTCCTGAATCTCTAAGAGGTACACAACCAACAGGAATGCTAAGGCTACCTTGTTACTGTTGTGCACCAGGGTGCAGAAACAACATTGATCATCCAAGAGCAAAGCCTCTCAAAGATTTTAGAACACTTCAAACACATTACAAGAGGAAACATGGAATTAAGCCATTCATGTGTAGAAAATGTAGCAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTTTGGTATTGTATCTGTGGTTCTGATTTTAAACACAAGAGGTCTCTTAAAGATCATATCAAAGCTTTTGGAAGTGGACATGCTGCTTATGGGTGTGATGGATTTGAAGAAGAGGATGAACCAGCTTCTGAAGTAGAGCAAGATAATGAATGA

Protein sequence

>Msa1034830

MADNPYSNLFSSSSSFFQFNHIFPSSNSNPSPQNHHPFLHHHNNNNHTFFHYHHHISSSSPPSPPLREELPLLSLIPTKQEKYDEDQQEHEVDIQDLPCTAMDLEEREEDGSSSRTTTVTVALHIGLPNPSAAEMASVLSSSNNSSEITITDKEHVGEDSCSGFMVNNRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGCDGFEEEDEPASEVEQDNE*