Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148600 | XP_024625805.1 | 97.989 | 348 | 6 | 1 | 1 | 348 | 1 | 347 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148600 | sp|Q9SVY1|ZWIP2_ARATH | 61.818 | 385 | 96 | 8 | 4 | 348 | 3 | 376 | 1.06e-140 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148600 | A0A396H3I2 | 97.989 | 348 | 6 | 1 | 1 | 348 | 1 | 347 | 0.0 | 716 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1148600 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1034830 | Msa1148600 | 0.966888 | 1.585011e-126 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148600 | MtrunA17_Chr7g0258011 | 97.989 | 348 | 6 | 1 | 1 | 348 | 1 | 347 | 0.0 | 716 |
| Msa1148600 | MtrunA17_Chr1g0173841 | 73.179 | 302 | 55 | 6 | 66 | 348 | 92 | 386 | 3.03e-157 | 446 |
| Msa1148600 | MtrunA17_Chr8g0352011 | 63.103 | 290 | 90 | 4 | 66 | 346 | 54 | 335 | 5.24e-130 | 375 |
| Msa1148600 | MtrunA17_Chr2g0328921 | 66.084 | 286 | 75 | 5 | 67 | 348 | 44 | 311 | 1.21e-129 | 373 |
| Msa1148600 | MtrunA17_Chr2g0321291 | 61.943 | 247 | 81 | 4 | 103 | 348 | 71 | 305 | 1.66e-109 | 322 |
| Msa1148600 | MtrunA17_Chr5g0422571 | 67.421 | 221 | 48 | 4 | 119 | 337 | 64 | 262 | 1.16e-104 | 309 |
| Msa1148600 | MtrunA17_Chr4g0026521 | 75.568 | 176 | 40 | 1 | 174 | 346 | 115 | 290 | 3.30e-102 | 303 |
| Msa1148600 | MtrunA17_Chr1g0198651 | 75.000 | 172 | 40 | 1 | 174 | 342 | 99 | 270 | 2.36e-97 | 290 |
| Msa1148600 | MtrunA17_Chr4g0053341 | 64.762 | 210 | 50 | 3 | 119 | 328 | 40 | 225 | 9.66e-94 | 279 |
| Msa1148600 | MtrunA17_Chr1g0200421 | 38.667 | 150 | 82 | 5 | 184 | 326 | 245 | 391 | 2.52e-25 | 106 |
| Msa1148600 | MtrunA17_Chr2g0320341 | 36.913 | 149 | 87 | 3 | 184 | 325 | 238 | 386 | 1.34e-22 | 97.8 |
| Msa1148600 | MtrunA17_Chr1g0181381 | 32.558 | 172 | 99 | 5 | 177 | 347 | 54 | 209 | 1.33e-21 | 95.5 |
| Msa1148600 | MtrunA17_Chr7g0268961 | 32.558 | 172 | 92 | 6 | 178 | 342 | 33 | 187 | 3.15e-21 | 94.4 |
| Msa1148600 | MtrunA17_Chr1g0191991 | 34.161 | 161 | 86 | 6 | 184 | 342 | 86 | 228 | 3.74e-21 | 94.4 |
| Msa1148600 | MtrunA17_Chr4g0029521 | 33.540 | 161 | 90 | 5 | 184 | 343 | 61 | 205 | 4.30e-21 | 94.0 |
| Msa1148600 | MtrunA17_Chr1g0151351 | 34.146 | 164 | 89 | 6 | 182 | 343 | 62 | 208 | 4.43e-21 | 94.0 |
| Msa1148600 | MtrunA17_Chr1g0185121 | 35.032 | 157 | 83 | 6 | 182 | 336 | 61 | 200 | 4.94e-21 | 93.6 |
| Msa1148600 | MtrunA17_Chr1g0199101 | 33.951 | 162 | 87 | 7 | 177 | 336 | 63 | 206 | 1.17e-20 | 92.8 |
| Msa1148600 | MtrunA17_Chr1g0210821 | 33.540 | 161 | 89 | 6 | 177 | 336 | 60 | 203 | 1.41e-20 | 92.8 |
| Msa1148600 | MtrunA17_Chr1g0162971 | 35.065 | 154 | 82 | 6 | 184 | 336 | 64 | 200 | 1.77e-20 | 92.0 |
| Msa1148600 | MtrunA17_Chr8g0342421 | 33.333 | 159 | 86 | 6 | 184 | 340 | 85 | 225 | 2.25e-20 | 92.0 |
| Msa1148600 | MtrunA17_Chr2g0330171 | 32.716 | 162 | 89 | 6 | 177 | 336 | 62 | 205 | 3.66e-20 | 91.3 |
| Msa1148600 | MtrunA17_Chr1g0163001 | 33.333 | 162 | 90 | 6 | 177 | 337 | 59 | 203 | 6.78e-20 | 90.5 |
| Msa1148600 | MtrunA17_Chr2g0326381 | 35.971 | 139 | 80 | 4 | 184 | 321 | 55 | 185 | 1.11e-19 | 89.4 |
| Msa1148600 | MtrunA17_Chr8g0373541 | 33.548 | 155 | 85 | 5 | 184 | 337 | 56 | 193 | 2.41e-19 | 89.0 |
| Msa1148600 | MtrunA17_Chr7g0263941 | 33.951 | 162 | 87 | 7 | 177 | 336 | 50 | 193 | 2.52e-19 | 88.2 |
| Msa1148600 | MtrunA17_Chr8g0382121 | 37.143 | 140 | 81 | 6 | 192 | 326 | 127 | 264 | 6.95e-19 | 85.9 |
| Msa1148600 | MtrunA17_Chr4g0040571 | 31.395 | 172 | 100 | 5 | 177 | 347 | 55 | 209 | 1.04e-18 | 87.0 |
| Msa1148600 | MtrunA17_Chr3g0123941 | 36.025 | 161 | 93 | 7 | 192 | 348 | 139 | 293 | 2.17e-18 | 84.7 |
| Msa1148600 | MtrunA17_Chr2g0324991 | 34.507 | 142 | 83 | 5 | 177 | 316 | 8 | 141 | 6.07e-17 | 77.0 |
| Msa1148600 | MtrunA17_Chr3g0141431 | 32.117 | 137 | 85 | 3 | 182 | 317 | 43 | 172 | 3.67e-16 | 79.0 |
| Msa1148600 | MtrunA17_Chr8g0375521 | 30.986 | 142 | 87 | 5 | 182 | 320 | 48 | 181 | 2.48e-13 | 70.5 |
| Msa1148600 | MtrunA17_Chr6g0479921 | 30.822 | 146 | 89 | 6 | 182 | 324 | 50 | 186 | 1.09e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148600 | AT3G57670.1 | 61.818 | 385 | 96 | 8 | 4 | 348 | 3 | 376 | 1.08e-141 | 407 |
| Msa1148600 | AT1G51220.1 | 54.444 | 360 | 126 | 8 | 1 | 345 | 1 | 337 | 2.39e-124 | 361 |
| Msa1148600 | AT3G20880.1 | 56.923 | 325 | 107 | 8 | 45 | 345 | 95 | 410 | 1.41e-119 | 351 |
| Msa1148600 | AT1G13290.1 | 68.868 | 212 | 40 | 4 | 119 | 328 | 54 | 241 | 1.11e-102 | 304 |
| Msa1148600 | AT1G34790.1 | 64.159 | 226 | 72 | 1 | 119 | 344 | 83 | 299 | 3.91e-101 | 300 |
| Msa1148600 | AT1G08290.1 | 75.148 | 169 | 38 | 2 | 174 | 338 | 164 | 332 | 2.92e-96 | 289 |
| Msa1148600 | AT1G34370.3 | 38.816 | 152 | 81 | 5 | 184 | 326 | 28 | 176 | 2.97e-26 | 106 |
| Msa1148600 | AT1G34370.2 | 38.816 | 152 | 81 | 5 | 184 | 326 | 238 | 386 | 9.01e-26 | 108 |
| Msa1148600 | AT1G34370.1 | 38.816 | 152 | 81 | 5 | 184 | 326 | 238 | 386 | 9.01e-26 | 108 |
| Msa1148600 | AT5G22890.1 | 39.744 | 156 | 81 | 6 | 184 | 329 | 211 | 363 | 1.48e-23 | 100 |
| Msa1148600 | AT5G03150.1 | 33.333 | 165 | 93 | 5 | 184 | 347 | 76 | 224 | 6.50e-22 | 97.1 |
| Msa1148600 | AT1G55110.3 | 35.404 | 161 | 85 | 6 | 182 | 340 | 84 | 227 | 1.48e-21 | 95.5 |
| Msa1148600 | AT1G55110.1 | 35.404 | 161 | 85 | 6 | 182 | 340 | 84 | 227 | 1.48e-21 | 95.5 |
| Msa1148600 | AT1G55110.2 | 35.404 | 161 | 85 | 6 | 182 | 340 | 84 | 227 | 1.48e-21 | 95.5 |
| Msa1148600 | AT2G02070.2 | 33.540 | 161 | 89 | 5 | 177 | 336 | 68 | 211 | 1.88e-20 | 92.8 |
| Msa1148600 | AT2G02070.1 | 33.540 | 161 | 89 | 5 | 177 | 336 | 68 | 211 | 1.88e-20 | 92.8 |
| Msa1148600 | AT2G02080.1 | 33.974 | 156 | 85 | 5 | 182 | 336 | 75 | 213 | 3.02e-20 | 92.0 |
| Msa1148600 | AT2G02080.4 | 33.974 | 156 | 85 | 5 | 182 | 336 | 75 | 213 | 3.02e-20 | 92.0 |
| Msa1148600 | AT2G02080.5 | 33.974 | 156 | 85 | 5 | 182 | 336 | 75 | 213 | 3.02e-20 | 92.0 |
| Msa1148600 | AT2G02080.3 | 33.974 | 156 | 85 | 5 | 182 | 336 | 75 | 213 | 3.02e-20 | 92.0 |
| Msa1148600 | AT5G66730.1 | 35.032 | 157 | 82 | 7 | 182 | 336 | 53 | 191 | 3.37e-20 | 92.0 |
| Msa1148600 | AT1G14580.1 | 33.951 | 162 | 87 | 6 | 177 | 336 | 69 | 212 | 9.26e-20 | 90.5 |
| Msa1148600 | AT1G14580.2 | 33.951 | 162 | 87 | 6 | 177 | 336 | 69 | 212 | 9.26e-20 | 90.5 |
| Msa1148600 | AT1G14580.3 | 33.951 | 162 | 87 | 6 | 177 | 336 | 83 | 226 | 1.03e-19 | 90.5 |
| Msa1148600 | AT2G02080.6 | 34.641 | 153 | 82 | 5 | 185 | 336 | 1 | 136 | 1.79e-19 | 89.4 |
| Msa1148600 | AT2G02080.2 | 34.641 | 153 | 82 | 5 | 185 | 336 | 1 | 136 | 1.79e-19 | 89.4 |
| Msa1148600 | AT3G45260.2 | 35.065 | 154 | 83 | 5 | 184 | 336 | 62 | 199 | 3.08e-19 | 89.0 |
| Msa1148600 | AT3G45260.1 | 35.065 | 154 | 83 | 5 | 184 | 336 | 62 | 199 | 3.08e-19 | 89.0 |
| Msa1148600 | AT5G44160.2 | 31.515 | 165 | 95 | 5 | 184 | 347 | 21 | 168 | 1.12e-18 | 87.0 |
| Msa1148600 | AT5G60470.1 | 33.117 | 154 | 86 | 5 | 184 | 336 | 58 | 195 | 1.21e-18 | 87.0 |
| Msa1148600 | AT5G44160.1 | 31.515 | 165 | 95 | 5 | 184 | 347 | 60 | 207 | 1.32e-18 | 87.0 |
| Msa1148600 | AT5G60470.2 | 33.117 | 154 | 86 | 5 | 184 | 336 | 67 | 204 | 1.37e-18 | 87.0 |
| Msa1148600 | AT5G60470.3 | 33.117 | 154 | 86 | 5 | 184 | 336 | 63 | 200 | 1.44e-18 | 87.0 |
| Msa1148600 | AT4G02670.1 | 32.298 | 161 | 92 | 4 | 177 | 336 | 69 | 213 | 1.82e-18 | 86.3 |
| Msa1148600 | AT3G50700.1 | 32.484 | 157 | 88 | 5 | 182 | 337 | 55 | 194 | 1.94e-18 | 86.7 |
| Msa1148600 | AT4G02670.2 | 32.298 | 161 | 92 | 4 | 177 | 336 | 71 | 215 | 1.95e-18 | 86.3 |
| Msa1148600 | AT1G03840.2 | 32.298 | 161 | 91 | 6 | 177 | 336 | 55 | 198 | 3.24e-18 | 85.9 |
| Msa1148600 | AT1G03840.1 | 31.056 | 161 | 93 | 5 | 177 | 336 | 57 | 200 | 3.34e-18 | 85.9 |
| Msa1148600 | AT3G13810.5 | 31.677 | 161 | 93 | 5 | 177 | 336 | 81 | 225 | 1.35e-17 | 84.3 |
| Msa1148600 | AT3G13810.4 | 31.677 | 161 | 93 | 5 | 177 | 336 | 86 | 230 | 1.42e-17 | 84.0 |
| Msa1148600 | AT3G13810.1 | 31.677 | 161 | 93 | 5 | 177 | 336 | 86 | 230 | 1.42e-17 | 84.0 |
| Msa1148600 | AT3G13810.6 | 31.677 | 161 | 93 | 5 | 177 | 336 | 67 | 211 | 1.43e-17 | 84.0 |
| Msa1148600 | AT3G13810.2 | 31.677 | 161 | 93 | 5 | 177 | 336 | 87 | 231 | 1.49e-17 | 84.0 |
| Msa1148600 | AT3G13810.3 | 31.677 | 161 | 93 | 5 | 177 | 336 | 73 | 217 | 1.68e-17 | 84.0 |
| Msa1148600 | AT1G25250.3 | 29.496 | 139 | 88 | 5 | 182 | 317 | 54 | 185 | 1.86e-13 | 71.2 |
| Msa1148600 | AT1G25250.1 | 29.496 | 139 | 88 | 5 | 182 | 317 | 31 | 162 | 2.16e-13 | 70.9 |
| Msa1148600 | AT1G68130.1 | 30.935 | 139 | 85 | 5 | 182 | 317 | 62 | 192 | 3.76e-13 | 70.5 |
Find 85 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCAATTAATTAGCTTAAA+TGG | 0.162327 | 7_4:-28937788 | Msa1148600:three_prime_UTR |
| GATCAAGTGGGAACAGTTTA+TGG | 0.228592 | 7_4:+28940409 | None:intergenic |
| CAGGATTCATGGTTAATAAT+AGG | 0.242177 | 7_4:-28939882 | Msa1148600:CDS |
| TTCCATTTAAGCTAATTAAT+TGG | 0.250212 | 7_4:+28937786 | None:intergenic |
| AAAGATCATATCAAAGCTTT+TGG | 0.279015 | 7_4:-28937954 | Msa1148600:CDS |
| TGTGTACCTCTTAGAGATTC+AGG | 0.283693 | 7_4:+28938239 | None:intergenic |
| GGAAGTGGACATGCTGCTTA+TGG | 0.286552 | 7_4:-28937933 | Msa1148600:CDS |
| AGCAAATGTTCCAACATAAA+AGG | 0.288527 | 7_4:+28937740 | None:intergenic |
| GTTGGTGAGGATTCTTGTTC+AGG | 0.320459 | 7_4:-28939901 | Msa1148600:CDS |
| AAAAGAATTGTGGGAAGCTT+TGG | 0.349652 | 7_4:-28938019 | Msa1148600:CDS |
| ATGATGATGGTAGTGGAAAA+AGG | 0.354603 | 7_4:+28940224 | None:intergenic |
| GGATTCTTGTTCAGGATTCA+TGG | 0.360583 | 7_4:-28939893 | Msa1148600:CDS |
| GAAGAGAAAATATTAGAGTA+AGG | 0.361484 | 7_4:+28940354 | None:intergenic |
| AAACCCTAGTGCTGCTGAAA+TGG | 0.370039 | 7_4:-28939983 | Msa1148600:CDS |
| GGCTTAACAAAGGACAATAT+TGG | 0.383450 | 7_4:-28939861 | Msa1148600:CDS |
| CCTTGTTACTGTTGTGCACC+AGG | 0.388233 | 7_4:-28938194 | Msa1148600:CDS |
| AGAGGTAGTTCTTCTCTTAG+AGG | 0.403255 | 7_4:+28940174 | None:intergenic |
| ACTCCTTCTCAGATTCTCAT+TGG | 0.410986 | 7_4:-28939832 | Msa1148600:CDS |
| TCTTTGAGAGGCTTTGCTCT+TGG | 0.418075 | 7_4:+28938149 | None:intergenic |
| GAAGTGGACATGCTGCTTAT+GGG | 0.418215 | 7_4:-28937932 | Msa1148600:CDS |
| ATTTCAGCAGCACTAGGGTT+TGG | 0.419339 | 7_4:+28939985 | None:intergenic |
| GATCTCTGAGGAGTTATTAG+AGG | 0.433036 | 7_4:+28939945 | None:intergenic |
| GAAGGGTTTGAATTTGAAGA+TGG | 0.443053 | 7_4:+28940297 | None:intergenic |
| TTCCCTTTCTTCTAAATCCA+TGG | 0.448360 | 7_4:+28940065 | None:intergenic |
| AGACCTTCCTTGCACTGCCA+TGG | 0.468218 | 7_4:-28940082 | Msa1148600:CDS |
| TGCCATGGATTTAGAAGAAA+GGG | 0.480220 | 7_4:-28940067 | Msa1148600:CDS |
| TCTTGCTCTACTTCAGAAGC+TGG | 0.480582 | 7_4:+28937882 | None:intergenic |
| AGGAGAAGGTGGTGAAGAAG+AGG | 0.481051 | 7_4:+28940197 | None:intergenic |
| CTAAGAGGTACACAACCAAC+AGG | 0.486579 | 7_4:-28938230 | Msa1148600:CDS |
| AGGAAATATGATGATGGTAG+TGG | 0.492337 | 7_4:+28940217 | None:intergenic |
| TTGTTGTGGTGGTGAAGAAA+AGG | 0.494029 | 7_4:+28940258 | None:intergenic |
| GAAGCCATTTCAGCAGCACT+AGG | 0.500052 | 7_4:+28939979 | None:intergenic |
| TCTTCTCTTAGAGGAGGAGA+AGG | 0.501187 | 7_4:+28940183 | None:intergenic |
| GAACTCATGAAAAGAATTGT+GGG | 0.503233 | 7_4:-28938028 | Msa1148600:CDS |
| ATTAATTAGCTTAAATGGAA+AGG | 0.508799 | 7_4:-28937783 | Msa1148600:three_prime_UTR |
| AGAACTCATGAAAAGAATTG+TGG | 0.519976 | 7_4:-28938029 | Msa1148600:CDS |
| AAGAGAAAATATTAGAGTAA+GGG | 0.520369 | 7_4:+28940355 | None:intergenic |
| TTAGAAGAAAGGGAAGAAGA+TGG | 0.524706 | 7_4:-28940057 | Msa1148600:CDS |
| TTTATGTTGGAACATTTGCT+AGG | 0.525943 | 7_4:-28937737 | Msa1148600:three_prime_UTR |
| GTTACTGTTGCACTTCACAT+AGG | 0.528079 | 7_4:-28940012 | Msa1148600:CDS |
| ATGAGAATCTGAGAAGGAGT+AGG | 0.530035 | 7_4:+28939835 | None:intergenic |
| TGTTGTGGTGGTGAAGAAAA+GGG | 0.533983 | 7_4:+28940259 | None:intergenic |
| CATGCTGCTTATGGGTGTGA+TGG | 0.534441 | 7_4:-28937924 | Msa1148600:CDS |
| GTTGGAATTAGGCTTAAAAG+AGG | 0.534675 | 7_4:+28940156 | None:intergenic |
| CATGGATCACAGTACAGAAA+AGG | 0.538411 | 7_4:-28938263 | Msa1148600:CDS |
| CTGCCATGGATTTAGAAGAA+AGG | 0.539425 | 7_4:-28940068 | Msa1148600:CDS |
| AATCCATGGCAGTGCAAGGA+AGG | 0.544023 | 7_4:+28940079 | None:intergenic |
| AGGTATGGTTATTGTTGTTG+TGG | 0.546230 | 7_4:+28940244 | None:intergenic |
| CTCATCAAATAATATATCCA+TGG | 0.548772 | 7_4:-28940385 | Msa1148600:exon |
| AAGAAGAGGAAATATGATGA+TGG | 0.552809 | 7_4:+28940211 | None:intergenic |
| TATGGTTATTGTTGTTGTGG+TGG | 0.558394 | 7_4:+28940247 | None:intergenic |
| AAGCTTTGGTATTGTATCTG+TGG | 0.559395 | 7_4:-28938005 | Msa1148600:CDS |
| AAAGGTCCTGAATCTCTAAG+AGG | 0.563513 | 7_4:-28938245 | Msa1148600:CDS |
| ACACATTACAAGAGGAAACA+TGG | 0.569309 | 7_4:-28938110 | Msa1148600:CDS |
| ACAGGGCAAGAAAACTGAGT+TGG | 0.573007 | 7_4:+28939808 | None:intergenic |
| TGAGAATCTGAGAAGGAGTA+GGG | 0.575360 | 7_4:+28939836 | None:intergenic |
| AGTGTTCTAAAATCTTTGAG+AGG | 0.584894 | 7_4:+28938137 | None:intergenic |
| CTTGTTACTGTTGTGCACCA+GGG | 0.585436 | 7_4:-28938193 | Msa1148600:CDS |
| AGAGTAAGGGTTATCAGCCA+TGG | 0.585920 | 7_4:+28940368 | None:intergenic |
| TCTCTTAGAGGAGGAGAAGG+TGG | 0.585932 | 7_4:+28940186 | None:intergenic |
| AGAGAGTACAAGATGGCTGA+AGG | 0.588675 | 7_4:+28940465 | None:intergenic |
| TTATTTGATGAGAGATCAAG+TGG | 0.593566 | 7_4:+28940396 | None:intergenic |
| GGTAGTTCTTCTCTTAGAGG+AGG | 0.595867 | 7_4:+28940177 | None:intergenic |
| CACTTCAAACACATTACAAG+AGG | 0.601250 | 7_4:-28938118 | Msa1148600:CDS |
| AAGCCATTTCAGCAGCACTA+GGG | 0.602433 | 7_4:+28939980 | None:intergenic |
| TCTAAATCCATGGCAGTGCA+AGG | 0.604858 | 7_4:+28940075 | None:intergenic |
| GGTAGCCTTAGCATTCCTGT+TGG | 0.607467 | 7_4:+28938215 | None:intergenic |
| TCAATGTTGTTTCTGCACCC+TGG | 0.610178 | 7_4:+28938176 | None:intergenic |
| AAGATGGCTGAAGGAAGTAG+TGG | 0.613233 | 7_4:+28940474 | None:intergenic |
| CACAACCAACAGGAATGCTA+AGG | 0.613402 | 7_4:-28938220 | Msa1148600:CDS |
| ATCACTGATAAAGAACATGT+TGG | 0.619011 | 7_4:-28939919 | Msa1148600:CDS |
| CAATAGATATAACAACATGC+AGG | 0.621278 | 7_4:-28939770 | Msa1148600:intron |
| GGACCAATGAGAATCTGAGA+AGG | 0.626496 | 7_4:+28939829 | None:intergenic |
| GTTAATAATAGGCTTAACAA+AGG | 0.627528 | 7_4:-28939871 | Msa1148600:CDS |
| TGATAAAGAACATGTTGGTG+AGG | 0.633314 | 7_4:-28939914 | Msa1148600:CDS |
| AGATCAACAAGAACATGAGG+TGG | 0.635764 | 7_4:-28940112 | Msa1148600:CDS |
| CATGTGTAGAAAATGTAGCA+AGG | 0.640710 | 7_4:-28938075 | Msa1148600:CDS |
| CCTGGTGCACAACAGTAACA+AGG | 0.646997 | 7_4:+28938194 | None:intergenic |
| TGAAGATCAACAAGAACATG+AGG | 0.648021 | 7_4:-28940115 | Msa1148600:CDS |
| TGGCTGAAGGAAGTAGTGGA+CGG | 0.664653 | 7_4:+28940478 | None:intergenic |
| GTGTGATGGATTTGAAGAAG+AGG | 0.666362 | 7_4:-28937910 | Msa1148600:CDS |
| CTGAAGGAAGTAGTGGACGG+TGG | 0.680102 | 7_4:+28940481 | None:intergenic |
| ATCAGTGATAGTGATCTCTG+AGG | 0.722446 | 7_4:+28939933 | None:intergenic |
| TGTGGTGGTGAAGAAAAGGG+TGG | 0.734643 | 7_4:+28940262 | None:intergenic |
| TATTTGATGAGAGATCAAGT+GGG | 0.793929 | 7_4:+28940397 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAACTTTGAATTATAA+AGG | + | chr7_4:28938565-28938584 | None:intergenic | 10.0% |
| !!! | GTGTTTTATATATATTAATT+TGG | - | chr7_4:28938955-28938974 | Msa1148600:intron | 10.0% |
| !!! | TATTTTTAAAATTACAGTTT+TGG | - | chr7_4:28939486-28939505 | Msa1148600:intron | 10.0% |
| !! | AAAAATAAAATTGATTACTA+AGG | + | chr7_4:28939618-28939637 | None:intergenic | 10.0% |
| !! | ATAGCATATATTAATTTCAT+TGG | - | chr7_4:28938874-28938893 | Msa1148600:intron | 15.0% |
| !! | AAGAGAAAATATTAGAGTAA+GGG | + | chr7_4:28937877-28937896 | None:intergenic | 20.0% |
| !! | AATTTGAAGATGGAAAAATA+TGG | + | chr7_4:28937925-28937944 | None:intergenic | 20.0% |
| !!! | TCATATTTTTCTTGTTTTGT+TGG | + | chr7_4:28938094-28938113 | None:intergenic | 20.0% |
| !!! | AAAATTTTTCTGTTCTATAC+AGG | + | chr7_4:28939148-28939167 | None:intergenic | 20.0% |
| !!! | ATTTATTTTAATGATCGATC+TGG | + | chr7_4:28939182-28939201 | None:intergenic | 20.0% |
| !! | ATTAAACTATGGAAAAAAGA+AGG | + | chr7_4:28939275-28939294 | None:intergenic | 20.0% |
| !! | AATTTAGAGATAGAAAAATG+TGG | - | chr7_4:28939370-28939389 | Msa1148600:intron | 20.0% |
| !!! | AAAAACTAAAGAAGAGTTTT+TGG | + | chr7_4:28939447-28939466 | None:intergenic | 20.0% |
| !!! | TGTCTTGAATTTTTTAGTTT+TGG | - | chr7_4:28939513-28939532 | Msa1148600:intron | 20.0% |
| !!! | GTCTTGAATTTTTTAGTTTT+GGG | - | chr7_4:28939514-28939533 | Msa1148600:intron | 20.0% |
| !! | TTTCAAAAACTATTTCAAAC+AGG | - | chr7_4:28939592-28939611 | Msa1148600:intron | 20.0% |
| !! | TTATTAATGTACAATCATGA+AGG | + | chr7_4:28939724-28939743 | None:intergenic | 20.0% |
| !!! | TACCAATTAATTAGCTTAAA+TGG | - | chr7_4:28940441-28940460 | Msa1148600:five_prime_UTR | 20.0% |
| !! | TTCCATTTAAGCTAATTAAT+TGG | + | chr7_4:28940446-28940465 | None:intergenic | 20.0% |
| !!! | ATTAATTAGCTTAAATGGAA+AGG | - | chr7_4:28940446-28940465 | Msa1148600:five_prime_UTR | 20.0% |
| !!! | TTTCTTTTTTCCTTTTATGT+TGG | - | chr7_4:28940479-28940498 | Msa1148600:five_prime_UTR | 20.0% |
| ! | CTCATCAAATAATATATCCA+TGG | - | chr7_4:28937844-28937863 | Msa1148600:three_prime_UTR | 25.0% |
| ! | GAAGAGAAAATATTAGAGTA+AGG | + | chr7_4:28937878-28937897 | None:intergenic | 25.0% |
| ! | ATGGAAAAATATGGTTGAAT+TGG | + | chr7_4:28937916-28937935 | None:intergenic | 25.0% |
| !!! | TTTCTTGTTTTGTTGGAATT+AGG | + | chr7_4:28938087-28938106 | None:intergenic | 25.0% |
| ! | GTTAATAATAGGCTTAACAA+AGG | - | chr7_4:28938358-28938377 | Msa1148600:intron | 25.0% |
| ! | AGAAAGTTATTGACAGAAAA+GGG | + | chr7_4:28938632-28938651 | None:intergenic | 25.0% |
| ! | AAGAAAGTTATTGACAGAAA+AGG | + | chr7_4:28938633-28938652 | None:intergenic | 25.0% |
| ! | CAAAAAGAAAGAAATGAAAG+AGG | + | chr7_4:28938744-28938763 | None:intergenic | 25.0% |
| !! | TTCTGAAGAAAGAAAAAAGA+AGG | + | chr7_4:28938828-28938847 | None:intergenic | 25.0% |
| ! | AGTTTAGTCAATCAAAGAAA+AGG | + | chr7_4:28939060-28939079 | None:intergenic | 25.0% |
| ! | TAAAAAATTGTTCCTCTTTG+TGG | - | chr7_4:28939205-28939224 | Msa1148600:intron | 25.0% |
| ! | TGAAGGACAAAGATTTAATT+TGG | + | chr7_4:28939707-28939726 | None:intergenic | 25.0% |
| !!! | TGTTTTTATAGATGCATATG+TGG | - | chr7_4:28939940-28939959 | Msa1148600:CDS | 25.0% |
| !! | GTTTTTATAGATGCATATGT+GGG | - | chr7_4:28939941-28939960 | Msa1148600:CDS | 25.0% |
| !! | TTTTTATAGATGCATATGTG+GGG | - | chr7_4:28939942-28939961 | Msa1148600:CDS | 25.0% |
| !! | AAAGATCATATCAAAGCTTT+TGG | - | chr7_4:28940275-28940294 | Msa1148600:CDS | 25.0% |
| TATTTGATGAGAGATCAAGT+GGG | + | chr7_4:28937835-28937854 | None:intergenic | 30.0% | |
| TTATTTGATGAGAGATCAAG+TGG | + | chr7_4:28937836-28937855 | None:intergenic | 30.0% | |
| AAGAAGAGGAAATATGATGA+TGG | + | chr7_4:28938021-28938040 | None:intergenic | 30.0% | |
| ATCACTGATAAAGAACATGT+TGG | - | chr7_4:28938310-28938329 | Msa1148600:intron | 30.0% | |
| CAGGATTCATGGTTAATAAT+AGG | - | chr7_4:28938347-28938366 | Msa1148600:intron | 30.0% | |
| !!! | TGAAAGTTTTAGAGCAAACA+GGG | + | chr7_4:28938441-28938460 | None:intergenic | 30.0% |
| !!! | TTGAAAGTTTTAGAGCAAAC+AGG | + | chr7_4:28938442-28938461 | None:intergenic | 30.0% |
| CAATAGATATAACAACATGC+AGG | - | chr7_4:28938459-28938478 | Msa1148600:intron | 30.0% | |
| TGAAACAAAACAGAAGAACA+GGG | + | chr7_4:28938530-28938549 | None:intergenic | 30.0% | |
| ATGAAACAAAACAGAAGAAC+AGG | + | chr7_4:28938531-28938550 | None:intergenic | 30.0% | |
| ! | TCCTTGATTTGAACCATTAA+CGG | - | chr7_4:28938652-28938671 | Msa1148600:intron | 30.0% |
| GAAAGAAAAAAGAAGGAAAG+AGG | + | chr7_4:28938821-28938840 | None:intergenic | 30.0% | |
| ! | AGCTAGTGTTAAATTTTGCA+TGG | - | chr7_4:28938933-28938952 | Msa1148600:intron | 30.0% |
| TCTCTCAGTATATATGAATC+AGG | + | chr7_4:28939010-28939029 | None:intergenic | 30.0% | |
| ATTCATATATACTGAGAGAC+TGG | - | chr7_4:28939011-28939030 | Msa1148600:intron | 30.0% | |
| TTCATATATACTGAGAGACT+GGG | - | chr7_4:28939012-28939031 | Msa1148600:intron | 30.0% | |
| AGTCAATCAAAGAAAAGGAA+AGG | + | chr7_4:28939055-28939074 | None:intergenic | 30.0% | |
| ! | TCAATGTAGTAAAAGGCATA+AGG | + | chr7_4:28939097-28939116 | None:intergenic | 30.0% |
| ACAGACTTCAATGTAGTAAA+AGG | + | chr7_4:28939104-28939123 | None:intergenic | 30.0% | |
| ! | TTTTTCTGTTCTATACAGGT+GGG | + | chr7_4:28939144-28939163 | None:intergenic | 30.0% |
| ! | ATTTTTCTGTTCTATACAGG+TGG | + | chr7_4:28939145-28939164 | None:intergenic | 30.0% |
| ATTTGGATGGTATATTAGCA+TGG | + | chr7_4:28939249-28939268 | None:intergenic | 30.0% | |
| AAAAAGAAGGCAAATTTGGA+TGG | + | chr7_4:28939262-28939281 | None:intergenic | 30.0% | |
| TGGAAAAAAGAAGGCAAATT+TGG | + | chr7_4:28939266-28939285 | None:intergenic | 30.0% | |
| !!! | TTTTGGAAAGTGTTTCAAAC+AGG | + | chr7_4:28939430-28939449 | None:intergenic | 30.0% |
| AGAATAACCATCGTAAAAAG+AGG | - | chr7_4:28939560-28939579 | Msa1148600:intron | 30.0% | |
| ! | GTAGATCTTGATAATAAGGT+CGG | + | chr7_4:28939788-28939807 | None:intergenic | 30.0% |
| ! | CTCAGTAGATCTTGATAATA+AGG | + | chr7_4:28939792-28939811 | None:intergenic | 30.0% |
| ! | TTTTATAGATGCATATGTGG+GGG | - | chr7_4:28939943-28939962 | Msa1148600:CDS | 30.0% |
| !! | AGTGTTCTAAAATCTTTGAG+AGG | + | chr7_4:28940095-28940114 | None:intergenic | 30.0% |
| ! | CTACATTTTCTACACATGAA+TGG | + | chr7_4:28940152-28940171 | None:intergenic | 30.0% |
| AGAACTCATGAAAAGAATTG+TGG | - | chr7_4:28940200-28940219 | Msa1148600:CDS | 30.0% | |
| GAACTCATGAAAAGAATTGT+GGG | - | chr7_4:28940201-28940220 | Msa1148600:CDS | 30.0% | |
| ! | GTTCTGATTTTAAACACAAG+AGG | - | chr7_4:28940246-28940265 | Msa1148600:CDS | 30.0% |
| AGCAAATGTTCCAACATAAA+AGG | + | chr7_4:28940492-28940511 | None:intergenic | 30.0% | |
| TTTATGTTGGAACATTTGCT+AGG | - | chr7_4:28940492-28940511 | Msa1148600:five_prime_UTR | 30.0% | |
| GAAGGGTTTGAATTTGAAGA+TGG | + | chr7_4:28937935-28937954 | None:intergenic | 35.0% | |
| ! | TATGGTTATTGTTGTTGTGG+TGG | + | chr7_4:28937985-28938004 | None:intergenic | 35.0% |
| ! | AGGTATGGTTATTGTTGTTG+TGG | + | chr7_4:28937988-28938007 | None:intergenic | 35.0% |
| !! | ATGATGATGGTAGTGGAAAA+AGG | + | chr7_4:28938008-28938027 | None:intergenic | 35.0% |
| !! | AGGAAATATGATGATGGTAG+TGG | + | chr7_4:28938015-28938034 | None:intergenic | 35.0% |
| GTTGGAATTAGGCTTAAAAG+AGG | + | chr7_4:28938076-28938095 | None:intergenic | 35.0% | |
| TGAAGATCAACAAGAACATG+AGG | - | chr7_4:28938114-28938133 | Msa1148600:CDS | 35.0% | |
| TGCCATGGATTTAGAAGAAA+GGG | - | chr7_4:28938162-28938181 | Msa1148600:CDS | 35.0% | |
| TTCCCTTTCTTCTAAATCCA+TGG | + | chr7_4:28938167-28938186 | None:intergenic | 35.0% | |
| TTAGAAGAAAGGGAAGAAGA+TGG | - | chr7_4:28938172-28938191 | Msa1148600:CDS | 35.0% | |
| TGATAAAGAACATGTTGGTG+AGG | - | chr7_4:28938315-28938334 | Msa1148600:intron | 35.0% | |
| GGCTTAACAAAGGACAATAT+TGG | - | chr7_4:28938368-28938387 | Msa1148600:intron | 35.0% | |
| ACCGTTAATGGTTCAAATCA+AGG | + | chr7_4:28938656-28938675 | None:intergenic | 35.0% | |
| AAAAAGAAGGAAAGAGGTCA+AGG | + | chr7_4:28938815-28938834 | None:intergenic | 35.0% | |
| ! | GCTATAACTCTAGAAGAAAG+AGG | + | chr7_4:28938859-28938878 | None:intergenic | 35.0% |
| ! | AGAAAAGGAAAGGTGTAGTA+AGG | + | chr7_4:28939045-28939064 | None:intergenic | 35.0% |
| GTATATTAGCATGGTTGGAT+TGG | + | chr7_4:28939240-28939259 | None:intergenic | 35.0% | |
| ! | TACAAGTCCTCTTTTTACGA+TGG | + | chr7_4:28939570-28939589 | None:intergenic | 35.0% |
| CACTTCAAACACATTACAAG+AGG | - | chr7_4:28940111-28940130 | Msa1148600:CDS | 35.0% | |
| ACACATTACAAGAGGAAACA+TGG | - | chr7_4:28940119-28940138 | Msa1148600:CDS | 35.0% | |
| CATGTGTAGAAAATGTAGCA+AGG | - | chr7_4:28940154-28940173 | Msa1148600:CDS | 35.0% | |
| AAAAGAATTGTGGGAAGCTT+TGG | - | chr7_4:28940210-28940229 | Msa1148600:CDS | 35.0% | |
| ! | AAGCTTTGGTATTGTATCTG+TGG | - | chr7_4:28940224-28940243 | Msa1148600:CDS | 35.0% |
| !! | CATATCAAAGCTTTTGGAAG+TGG | - | chr7_4:28940281-28940300 | Msa1148600:CDS | 35.0% |
| ! | TAGAGAGAGAGAGTACAAGA+TGG | + | chr7_4:28937774-28937793 | None:intergenic | 40.0% |
| GATCAAGTGGGAACAGTTTA+TGG | + | chr7_4:28937823-28937842 | None:intergenic | 40.0% | |
| ! | AGAAAAGGGTGGTGATTTTG+TGG | + | chr7_4:28937959-28937978 | None:intergenic | 40.0% |
| ! | TGTTGTGGTGGTGAAGAAAA+GGG | + | chr7_4:28937973-28937992 | None:intergenic | 40.0% |
| ! | TTGTTGTGGTGGTGAAGAAA+AGG | + | chr7_4:28937974-28937993 | None:intergenic | 40.0% |
| !! | GATGGTAGTGGAAAAAGGTA+TGG | + | chr7_4:28938003-28938022 | None:intergenic | 40.0% |
| AGAGGTAGTTCTTCTCTTAG+AGG | + | chr7_4:28938058-28938077 | None:intergenic | 40.0% | |
| AGATCAACAAGAACATGAGG+TGG | - | chr7_4:28938117-28938136 | Msa1148600:CDS | 40.0% | |
| CTGCCATGGATTTAGAAGAA+AGG | - | chr7_4:28938161-28938180 | Msa1148600:CDS | 40.0% | |
| GTTACTGTTGCACTTCACAT+AGG | - | chr7_4:28938217-28938236 | Msa1148600:CDS | 40.0% | |
| ! | GATCTCTGAGGAGTTATTAG+AGG | + | chr7_4:28938287-28938306 | None:intergenic | 40.0% |
| ! | ATCAGTGATAGTGATCTCTG+AGG | + | chr7_4:28938299-28938318 | None:intergenic | 40.0% |
| GGATTCTTGTTCAGGATTCA+TGG | - | chr7_4:28938336-28938355 | Msa1148600:intron | 40.0% | |
| TGAGAATCTGAGAAGGAGTA+GGG | + | chr7_4:28938396-28938415 | None:intergenic | 40.0% | |
| ATGAGAATCTGAGAAGGAGT+AGG | + | chr7_4:28938397-28938416 | None:intergenic | 40.0% | |
| ACTCCTTCTCAGATTCTCAT+TGG | - | chr7_4:28938397-28938416 | Msa1148600:intron | 40.0% | |
| AAACAGAAGAACAGGGTCTT+TGG | + | chr7_4:28938523-28938542 | None:intergenic | 40.0% | |
| AAGCATCAGAGAACCGTTAA+TGG | + | chr7_4:28938668-28938687 | None:intergenic | 40.0% | |
| ATTAACGGTTCTCTGATGCT+TGG | - | chr7_4:28938667-28938686 | Msa1148600:intron | 40.0% | |
| TCTGATGCTTGGATAGAAAG+AGG | - | chr7_4:28938678-28938697 | Msa1148600:intron | 40.0% | |
| GGATGGTATATTAGCATGGT+TGG | + | chr7_4:28939245-28939264 | None:intergenic | 40.0% | |
| CATGGATCACAGTACAGAAA+AGG | - | chr7_4:28939966-28939985 | Msa1148600:CDS | 40.0% | |
| AAAGGTCCTGAATCTCTAAG+AGG | - | chr7_4:28939984-28940003 | Msa1148600:CDS | 40.0% | |
| TGTGTACCTCTTAGAGATTC+AGG | + | chr7_4:28939993-28940012 | None:intergenic | 40.0% | |
| !!! | CTTTTGCTGTTAGAGGAGAT+TGG | - | chr7_4:28940177-28940196 | Msa1148600:CDS | 40.0% |
| !! | GTGTGATGGATTTGAAGAAG+AGG | - | chr7_4:28940319-28940338 | Msa1148600:CDS | 40.0% |
| AAGATGGCTGAAGGAAGTAG+TGG | + | chr7_4:28937758-28937777 | None:intergenic | 45.0% | |
| ! | AGAGAGTACAAGATGGCTGA+AGG | + | chr7_4:28937767-28937786 | None:intergenic | 45.0% |
| AGAGTAAGGGTTATCAGCCA+TGG | + | chr7_4:28937864-28937883 | None:intergenic | 45.0% | |
| ! | GGTGGTGATTTTGTGGAGAA+GGG | + | chr7_4:28937952-28937971 | None:intergenic | 45.0% |
| TCTTCTCTTAGAGGAGGAGA+AGG | + | chr7_4:28938049-28938068 | None:intergenic | 45.0% | |
| GGTAGTTCTTCTCTTAGAGG+AGG | + | chr7_4:28938055-28938074 | None:intergenic | 45.0% | |
| TCTAAATCCATGGCAGTGCA+AGG | + | chr7_4:28938157-28938176 | None:intergenic | 45.0% | |
| ATTTCAGCAGCACTAGGGTT+TGG | + | chr7_4:28938247-28938266 | None:intergenic | 45.0% | |
| ! | AAACCCTAGTGCTGCTGAAA+TGG | - | chr7_4:28938246-28938265 | Msa1148600:CDS | 45.0% |
| AAGCCATTTCAGCAGCACTA+GGG | + | chr7_4:28938252-28938271 | None:intergenic | 45.0% | |
| ! | GTTGGTGAGGATTCTTGTTC+AGG | - | chr7_4:28938328-28938347 | Msa1148600:intron | 45.0% |
| GGACCAATGAGAATCTGAGA+AGG | + | chr7_4:28938403-28938422 | None:intergenic | 45.0% | |
| ACAGGGCAAGAAAACTGAGT+TGG | + | chr7_4:28938424-28938443 | None:intergenic | 45.0% | |
| AGAAGCAGAAGCAGAAGCAA+TGG | + | chr7_4:28938605-28938624 | None:intergenic | 45.0% | |
| TGGACTAAGAAGCCACAAAG+AGG | + | chr7_4:28939220-28939239 | None:intergenic | 45.0% | |
| ! | CTAAGAGGTACACAACCAAC+AGG | - | chr7_4:28939999-28940018 | Msa1148600:CDS | 45.0% |
| CACAACCAACAGGAATGCTA+AGG | - | chr7_4:28940009-28940028 | Msa1148600:CDS | 45.0% | |
| CTTGTTACTGTTGTGCACCA+GGG | - | chr7_4:28940036-28940055 | Msa1148600:CDS | 45.0% | |
| !! | TCAATGTTGTTTCTGCACCC+TGG | + | chr7_4:28940056-28940075 | None:intergenic | 45.0% |
| ! | TCTTTGAGAGGCTTTGCTCT+TGG | + | chr7_4:28940083-28940102 | None:intergenic | 45.0% |
| !!! | AGCAAGGCTTTTGCTGTTAG+AGG | - | chr7_4:28940170-28940189 | Msa1148600:CDS | 45.0% |
| ! | GAAGTGGACATGCTGCTTAT+GGG | - | chr7_4:28940297-28940316 | Msa1148600:CDS | 45.0% |
| TCTTGCTCTACTTCAGAAGC+TGG | + | chr7_4:28940350-28940369 | None:intergenic | 45.0% | |
| !!! | TTTATTTTAAGAAATAATTT+TGG | - | chr7_4:28938907-28938926 | Msa1148600:intron | 5.0% |
| !!! | TTATTTTAAGAAATAATTTT+GGG | - | chr7_4:28938908-28938927 | Msa1148600:intron | 5.0% |
| !! | AATATAATTTAATTAAACTA+TGG | + | chr7_4:28939286-28939305 | None:intergenic | 5.0% |
| ! | TGGCTGAAGGAAGTAGTGGA+CGG | + | chr7_4:28937754-28937773 | None:intergenic | 50.0% |
| ! | GGGTGGTGATTTTGTGGAGA+AGG | + | chr7_4:28937953-28937972 | None:intergenic | 50.0% |
| ! | TGTGGTGGTGAAGAAAAGGG+TGG | + | chr7_4:28937970-28937989 | None:intergenic | 50.0% |
| AGGAGAAGGTGGTGAAGAAG+AGG | + | chr7_4:28938035-28938054 | None:intergenic | 50.0% | |
| TCTCTTAGAGGAGGAGAAGG+TGG | + | chr7_4:28938046-28938065 | None:intergenic | 50.0% | |
| AATCCATGGCAGTGCAAGGA+AGG | + | chr7_4:28938153-28938172 | None:intergenic | 50.0% | |
| GAAGCCATTTCAGCAGCACT+AGG | + | chr7_4:28938253-28938272 | None:intergenic | 50.0% | |
| TAGATGCATATGTGGGGGCA+TGG | - | chr7_4:28939948-28939967 | Msa1148600:CDS | 50.0% | |
| ! | GGTAGCCTTAGCATTCCTGT+TGG | + | chr7_4:28940017-28940036 | None:intergenic | 50.0% |
| CCTGGTGCACAACAGTAACA+AGG | + | chr7_4:28940038-28940057 | None:intergenic | 50.0% | |
| CCTTGTTACTGTTGTGCACC+AGG | - | chr7_4:28940035-28940054 | Msa1148600:CDS | 50.0% | |
| ! | GGAAGTGGACATGCTGCTTA+TGG | - | chr7_4:28940296-28940315 | Msa1148600:CDS | 50.0% |
| ! | CATGCTGCTTATGGGTGTGA+TGG | - | chr7_4:28940305-28940324 | Msa1148600:CDS | 50.0% |
| !! | CTGAAGGAAGTAGTGGACGG+TGG | + | chr7_4:28937751-28937770 | None:intergenic | 55.0% |
| AGACCTTCCTTGCACTGCCA+TGG | - | chr7_4:28938147-28938166 | Msa1148600:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 28937727 | 28940524 | 28937727 | ID=Msa1148600;Name=Msa1148600 |
| chr7_4 | mRNA | 28937727 | 28940524 | 28937727 | ID=Msa1148600-mRNA-1;Parent=Msa1148600;Name=Msa1148600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=136|1|1|1|1|1|2|145|348 |
| chr7_4 | exon | 28937727 | 28938300 | 28937727 | ID=Msa1148600-mRNA-1:exon:7121;Parent=Msa1148600-mRNA-1 |
| chr7_4 | exon | 28939771 | 28940524 | 28939771 | ID=Msa1148600-mRNA-1:exon:7120;Parent=Msa1148600-mRNA-1 |
| chr7_4 | five_prime_UTR | 28940389 | 28940524 | 28940389 | ID=Msa1148600-mRNA-1:five_prime_utr;Parent=Msa1148600-mRNA-1 |
| chr7_4 | CDS | 28939771 | 28940388 | 28939771 | ID=Msa1148600-mRNA-1:cds;Parent=Msa1148600-mRNA-1 |
| chr7_4 | CDS | 28937872 | 28938300 | 28937872 | ID=Msa1148600-mRNA-1:cds;Parent=Msa1148600-mRNA-1 |
| chr7_4 | three_prime_UTR | 28937727 | 28937871 | 28937727 | ID=Msa1148600-mRNA-1:three_prime_utr;Parent=Msa1148600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
