Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035350 | XP_003625265.1 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 785 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035350 | sp|P46258|ACT3_PEA | 98.939 | 377 | 4 | 0 | 1 | 377 | 1 | 377 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035350 | G7KVE1 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 785 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630940 | Msa1035350 | 0.806570 | 7.716054e-50 | -8.615850e-47 |
| Msa1035350 | Msa1116400 | 0.973836 | 4.157166e-137 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035350 | MtrunA17_Chr7g0258721 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 785 |
| Msa1035350 | MtrunA17_Chr1g0175391 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 769 |
| Msa1035350 | MtrunA17_Chr2g0328091 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 765 |
| Msa1035350 | MtrunA17_Chr6g0448881 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa1035350 | MtrunA17_Chr3g0129641 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa1035350 | MtrunA17_Chr7g0223901 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa1035350 | MtrunA17_Chr2g0278591 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa1035350 | MtrunA17_Chr7g0224401 | 43.799 | 379 | 199 | 3 | 10 | 374 | 7 | 385 | 1.58e-120 | 354 |
| Msa1035350 | MtrunA17_Chr5g0427591 | 36.996 | 446 | 208 | 11 | 1 | 376 | 1 | 443 | 3.95e-92 | 283 |
| Msa1035350 | MtrunA17_Chr8g0361001 | 36.996 | 446 | 208 | 11 | 1 | 376 | 1 | 443 | 5.58e-92 | 283 |
| Msa1035350 | MtrunA17_Chr8g0381261 | 34.845 | 419 | 207 | 10 | 10 | 372 | 10 | 418 | 7.50e-72 | 230 |
| Msa1035350 | MtrunA17_Chr3g0089031 | 37.766 | 376 | 208 | 9 | 11 | 377 | 5 | 363 | 1.94e-68 | 219 |
| Msa1035350 | MtrunA17_Chr2g0305361 | 27.854 | 438 | 250 | 7 | 4 | 377 | 2 | 437 | 2.74e-57 | 192 |
| Msa1035350 | MtrunA17_Chr3g0080021 | 30.303 | 297 | 183 | 9 | 91 | 371 | 179 | 467 | 1.14e-39 | 146 |
| Msa1035350 | MtrunA17_Chr8g0369101 | 31.058 | 293 | 175 | 10 | 91 | 366 | 187 | 469 | 1.87e-35 | 135 |
| Msa1035350 | MtrunA17_Chr3g0111971 | 29.762 | 252 | 158 | 7 | 9 | 245 | 21 | 268 | 2.77e-23 | 101 |
| Msa1035350 | MtrunA17_Chr3g0111971 | 34.426 | 122 | 77 | 2 | 250 | 368 | 586 | 707 | 6.54e-16 | 79.3 |
| Msa1035350 | MtrunA17_Chr8g0336071 | 40.000 | 95 | 57 | 0 | 105 | 199 | 1 | 95 | 3.56e-19 | 81.6 |
| Msa1035350 | MtrunA17_Chr8g0336061 | 42.391 | 92 | 40 | 2 | 241 | 319 | 12 | 103 | 2.41e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035350 | AT5G09810.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa1035350 | AT3G12110.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 760 |
| Msa1035350 | AT3G46520.2 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1035350 | AT3G46520.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1035350 | AT3G53750.1 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1035350 | AT3G53750.2 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1035350 | AT2G37620.1 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1035350 | AT2G37620.3 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1035350 | AT2G37620.2 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1035350 | AT2G37620.4 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1035350 | AT5G59370.2 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 758 |
| Msa1035350 | AT5G59370.1 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 758 |
| Msa1035350 | AT3G18780.2 | 90.981 | 377 | 34 | 0 | 1 | 377 | 1 | 377 | 0.0 | 737 |
| Msa1035350 | AT3G18780.3 | 90.981 | 377 | 34 | 0 | 1 | 377 | 1 | 377 | 0.0 | 737 |
| Msa1035350 | AT1G49240.1 | 90.716 | 377 | 35 | 0 | 1 | 377 | 1 | 377 | 0.0 | 735 |
| Msa1035350 | AT3G18780.1 | 90.808 | 359 | 33 | 0 | 1 | 359 | 1 | 359 | 0.0 | 696 |
| Msa1035350 | AT2G42100.1 | 85.326 | 368 | 54 | 0 | 10 | 377 | 11 | 378 | 0.0 | 677 |
| Msa1035350 | AT2G42090.1 | 71.351 | 370 | 101 | 1 | 7 | 376 | 1 | 365 | 0.0 | 568 |
| Msa1035350 | AT2G42170.1 | 78.313 | 332 | 69 | 1 | 46 | 377 | 1 | 329 | 0.0 | 560 |
| Msa1035350 | AT2G42170.3 | 78.313 | 332 | 69 | 1 | 46 | 377 | 1 | 329 | 0.0 | 560 |
| Msa1035350 | AT2G42170.4 | 78.205 | 312 | 65 | 1 | 46 | 357 | 1 | 309 | 0.0 | 522 |
| Msa1035350 | AT2G42170.2 | 78.205 | 312 | 65 | 1 | 46 | 357 | 1 | 309 | 0.0 | 522 |
| Msa1035350 | AT2G42170.5 | 78.761 | 226 | 45 | 1 | 152 | 377 | 9 | 231 | 6.01e-132 | 377 |
| Msa1035350 | AT3G27000.1 | 44.591 | 379 | 196 | 4 | 10 | 374 | 7 | 385 | 2.71e-122 | 358 |
| Msa1035350 | AT1G18450.1 | 36.569 | 443 | 211 | 9 | 1 | 376 | 1 | 440 | 8.26e-94 | 288 |
| Msa1035350 | AT1G13180.1 | 34.615 | 416 | 212 | 11 | 10 | 372 | 9 | 417 | 7.23e-72 | 231 |
| Msa1035350 | AT3G60830.1 | 37.731 | 379 | 212 | 9 | 7 | 377 | 1 | 363 | 1.23e-67 | 218 |
| Msa1035350 | AT3G33520.1 | 30.166 | 421 | 236 | 7 | 10 | 377 | 5 | 420 | 7.18e-59 | 197 |
| Msa1035350 | AT5G56180.3 | 30.986 | 284 | 171 | 9 | 91 | 358 | 50 | 324 | 2.26e-34 | 130 |
| Msa1035350 | AT5G56180.1 | 30.986 | 284 | 171 | 9 | 91 | 358 | 182 | 456 | 1.23e-33 | 130 |
| Msa1035350 | AT3G12380.2 | 31.395 | 258 | 152 | 9 | 9 | 245 | 21 | 274 | 8.39e-26 | 109 |
| Msa1035350 | AT3G12380.2 | 33.103 | 145 | 93 | 2 | 228 | 368 | 572 | 716 | 3.24e-16 | 80.9 |
| Msa1035350 | AT3G12380.1 | 31.250 | 256 | 149 | 9 | 9 | 245 | 21 | 268 | 3.73e-25 | 107 |
| Msa1035350 | AT3G12380.1 | 33.103 | 145 | 93 | 2 | 228 | 368 | 566 | 710 | 3.26e-16 | 80.9 |
| Msa1035350 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.61e-23 | 95.1 |
| Msa1035350 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.61e-23 | 95.1 |
| Msa1035350 | AT5G56180.2 | 32.292 | 192 | 110 | 7 | 91 | 271 | 182 | 364 | 8.89e-19 | 87.4 |
| Msa1035350 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 3.26e-12 | 64.7 |
Find 119 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATGGGATTGTTAGTAAT+TGG | 0.164954 | 7_1:+71169728 | Msa1035350:CDS |
| CTGGATTGGAGGTTCCATTT+TGG | 0.195803 | 7_1:+71171219 | Msa1035350:CDS |
| GACGGCTGGAACAAAACTTC+TGG | 0.283900 | 7_1:-71170974 | None:intergenic |
| TGTTAGTAATTGGGATGATA+TGG | 0.286824 | 7_1:+71169738 | Msa1035350:CDS |
| AGAAGAACAGGGTGTTCTTC+AGG | 0.300324 | 7_1:-71169805 | None:intergenic |
| GAGGGATATGAAGGAGAAAT+TGG | 0.306130 | 7_1:+71170829 | Msa1035350:CDS |
| CATTTCCTGTGTACTATTGA+TGG | 0.320989 | 7_1:-71171471 | None:intergenic |
| ATCCTTCGTTTGGATCTTGC+AGG | 0.332165 | 7_1:+71170725 | Msa1035350:CDS |
| CTAACAATCCCATGCTCAAT+TGG | 0.332451 | 7_1:-71169721 | None:intergenic |
| AGTGCATATCCCTCGTAAAT+AGG | 0.333417 | 7_1:-71170692 | None:intergenic |
| GGTGCTTCAGTGAGAAGAAC+AGG | 0.346523 | 7_1:-71169817 | None:intergenic |
| GGTGCATGAGAGCTGGATTA+AGG | 0.354953 | 7_1:+71171512 | Msa1035350:three_prime_UTR |
| TCCACATGCAATCCTTCGTT+TGG | 0.359517 | 7_1:+71170715 | Msa1035350:CDS |
| AAGGCAGAATATGATGAATC+TGG | 0.369605 | 7_1:+71171447 | Msa1035350:CDS |
| CGATTAGCCTTAGGATTAAG+AGG | 0.392490 | 7_1:-71169838 | None:intergenic |
| CAAAGAAATGGTAAAAGAAT+AGG | 0.395590 | 7_1:-71171597 | None:intergenic |
| AGTGCTGAGAGATGCCAAAA+TGG | 0.400190 | 7_1:-71171233 | None:intergenic |
| GATGTGTATTGTTACTGATT+TGG | 0.407826 | 7_1:+71171722 | Msa1035350:three_prime_UTR |
| ATCTCTCAGCACTTTCCAAC+AGG | 0.421981 | 7_1:+71171243 | Msa1035350:CDS |
| ATAATTTATGTTTATCAAGT+TGG | 0.424435 | 7_1:-71171892 | None:intergenic |
| TGAAGTGTGATGTCGACATT+AGG | 0.428549 | 7_1:+71171050 | Msa1035350:CDS |
| GGTTCCGTTGTCGCAAACTA+AGG | 0.435984 | 7_1:-71169310 | None:intergenic |
| TGTTCCAGCCGTCCATGATC+GGG | 0.440481 | 7_1:+71170984 | Msa1035350:CDS |
| AATGGTAAAAGAATAGGAAA+TGG | 0.440968 | 7_1:-71171591 | None:intergenic |
| TTGTTCCAGCCGTCCATGAT+CGG | 0.442160 | 7_1:+71170983 | Msa1035350:CDS |
| TATGCGAGTGGTCGTACAAC+TGG | 0.443707 | 7_1:+71169940 | Msa1035350:CDS |
| GAGAAACGTAATCAAAGAAA+TGG | 0.444571 | 7_1:-71171609 | None:intergenic |
| GCAGTATTCCCTAGCATAGT+AGG | 0.445310 | 7_1:+71169598 | Msa1035350:CDS |
| GCATGGGATTGTTAGTAATT+GGG | 0.447989 | 7_1:+71169729 | Msa1035350:CDS |
| AAGTGTTCTGGTTGTCATAG+TGG | 0.453137 | 7_1:+71171773 | Msa1035350:three_prime_UTR |
| CTCATCCTATCAGCAATACC+AGG | 0.462364 | 7_1:-71171121 | None:intergenic |
| AGGAGATTCCATCCCGATCA+TGG | 0.463558 | 7_1:-71170996 | None:intergenic |
| ACGGCTGGAACAAAACTTCT+GGG | 0.468624 | 7_1:-71170973 | None:intergenic |
| TTAGTTTGCGACAACGGAAC+CGG | 0.471674 | 7_1:+71169312 | Msa1035350:CDS |
| CAGAGAGGAAGTACAGTGTC+TGG | 0.471867 | 7_1:+71171200 | Msa1035350:CDS |
| AAGTTCCTCAACCAACTAGA+TGG | 0.474313 | 7_1:-71171568 | None:intergenic |
| CACATCTCTACAACAAAATG+AGG | 0.474871 | 7_1:-71171705 | None:intergenic |
| TATTGCTCTTGATTATGAGC+AGG | 0.475672 | 7_1:+71170856 | Msa1035350:CDS |
| GGGATGATATGGAGAAGATC+TGG | 0.484705 | 7_1:+71169749 | Msa1035350:CDS |
| AGGAAGTACAGTGTCTGGAT+TGG | 0.485496 | 7_1:+71171205 | Msa1035350:CDS |
| GACATTAGGAAGGATCTCTA+TGG | 0.488078 | 7_1:+71171064 | Msa1035350:CDS |
| CAGACACTGTACTTCCTCTC+TGG | 0.493244 | 7_1:-71171199 | None:intergenic |
| AAATCACGGTGCATGAGAGC+TGG | 0.493439 | 7_1:+71171505 | Msa1035350:three_prime_UTR |
| CACAGGGGTAATGGTTGGAA+TGG | 0.495803 | 7_1:+71169633 | Msa1035350:CDS |
| AATTTCTCGCTCTGCTGAAG+TGG | 0.496387 | 7_1:-71170804 | None:intergenic |
| TAACAATCCCATGCTCAATT+GGG | 0.497649 | 7_1:-71169720 | None:intergenic |
| ATCGTGATTACCTGTCCATC+AGG | 0.500077 | 7_1:-71170929 | None:intergenic |
| AGAAATTGTGAGGGATATGA+AGG | 0.501249 | 7_1:+71170820 | Msa1035350:CDS |
| AAGTACAGTGTCTGGATTGG+AGG | 0.501277 | 7_1:+71171208 | Msa1035350:CDS |
| TGTTCCCTGGTATTGCTGAT+AGG | 0.501884 | 7_1:+71171116 | Msa1035350:CDS |
| GATATTCCAAACCGACGGCC+AGG | 0.502556 | 7_1:+71169103 | None:intergenic |
| CTGTCCATCAGGTAGCTCAT+AGG | 0.503008 | 7_1:-71170918 | None:intergenic |
| TCCACGTCACACAGGGGTAA+TGG | 0.512712 | 7_1:+71169624 | Msa1035350:CDS |
| CGTGGACGTCCTACTATGCT+AGG | 0.514609 | 7_1:-71169607 | None:intergenic |
| ACAGGGGTAATGGTTGGAAT+GGG | 0.516861 | 7_1:+71169634 | Msa1035350:CDS |
| CCATCCCGATCATGGACGGC+TGG | 0.529203 | 7_1:-71170988 | None:intergenic |
| TTGAAATACCCAATTGAGCA+TGG | 0.529351 | 7_1:+71169712 | Msa1035350:CDS |
| ATATCCCAACATATCAAGAA+AGG | 0.530216 | 7_1:-71171640 | None:intergenic |
| GTGCTTTCACTTTATGCGAG+TGG | 0.546070 | 7_1:+71169928 | Msa1035350:CDS |
| TGCAGGAGATGATGCACCAA+GGG | 0.547290 | 7_1:+71169576 | Msa1035350:CDS |
| GAGCAAGGAGATTACAGCAT+TGG | 0.550032 | 7_1:+71171141 | Msa1035350:CDS |
| TCGAGTTAAATGTTGTCTCA+TGG | 0.551870 | 7_1:-71171024 | None:intergenic |
| CTATGAGCTACCTGATGGAC+AGG | 0.554582 | 7_1:+71170919 | Msa1035350:CDS |
| CAGCCCTTAGTTTGCGACAA+CGG | 0.557180 | 7_1:+71169306 | Msa1035350:CDS |
| TGAATAGCAACATACATAGC+AGG | 0.559953 | 7_1:-71169901 | None:intergenic |
| GGAACAAAACTTCTGGGCAT+CGG | 0.561285 | 7_1:-71170967 | None:intergenic |
| AATTGCTTTAGATACGATCC+TGG | 0.561757 | 7_1:-71169121 | None:intergenic |
| AGGCAGAATATGATGAATCT+GGG | 0.564408 | 7_1:+71171448 | Msa1035350:CDS |
| TGAAGCACCTCTTAATCCTA+AGG | 0.566737 | 7_1:+71169831 | Msa1035350:CDS |
| CAACGGAACCGGCATGGTCA+AGG | 0.570249 | 7_1:+71169323 | Msa1035350:CDS |
| AAATACCATCTAGTTGGTTG+AGG | 0.571614 | 7_1:+71171563 | Msa1035350:three_prime_UTR |
| AATGTTGTCTCATGGATACC+AGG | 0.572742 | 7_1:-71171016 | None:intergenic |
| ACCTAGTAGCATGAAAATCA+AGG | 0.573048 | 7_1:+71171165 | Msa1035350:CDS |
| GGTGAAAGTGTAGCCACGCT+CGG | 0.575757 | 7_1:-71170783 | None:intergenic |
| TGAAATACCCAATTGAGCAT+GGG | 0.576183 | 7_1:+71169713 | Msa1035350:CDS |
| ATGCTAGGGAATACTGCCCT+TGG | 0.578562 | 7_1:-71169592 | None:intergenic |
| ACCATTACCCCTGTGTGACG+TGG | 0.580899 | 7_1:-71169625 | None:intergenic |
| ACATCTCTACAACAAAATGA+GGG | 0.581981 | 7_1:-71171704 | None:intergenic |
| GGTGGTTCAACAATGTTCCC+TGG | 0.583355 | 7_1:+71171103 | Msa1035350:CDS |
| CGTCACACAGGGGTAATGGT+TGG | 0.583763 | 7_1:+71169628 | Msa1035350:CDS |
| GTTCCGTTGTCGCAAACTAA+GGG | 0.584635 | 7_1:-71169309 | None:intergenic |
| TATGGTAACATTGTGTTGAG+TGG | 0.586496 | 7_1:+71171082 | Msa1035350:CDS |
| GATTGATACCTTGACCATGC+CGG | 0.591606 | 7_1:-71169331 | None:intergenic |
| GGTAACATTGTGTTGAGTGG+TGG | 0.592071 | 7_1:+71171085 | Msa1035350:CDS |
| ATGATCGGGATGGAATCTCC+TGG | 0.596212 | 7_1:+71170998 | Msa1035350:CDS |
| CTTCAACAAATCAACAACAA+TGG | 0.606654 | 7_1:+71169266 | Msa1035350:exon |
| TAGGACGTCCACGTCACACA+GGG | 0.610133 | 7_1:+71169617 | Msa1035350:CDS |
| GATTCCATCCCGATCATGGA+CGG | 0.611630 | 7_1:-71170992 | None:intergenic |
| AAGACCTATGAGCTACCTGA+TGG | 0.618966 | 7_1:+71170914 | Msa1035350:CDS |
| TTAGATACGATCCTGGCCGT+CGG | 0.620080 | 7_1:-71169114 | None:intergenic |
| GAAGAAACAGACACGGAGGA+AGG | 0.620352 | 7_1:-71169247 | None:intergenic |
| CAAGTTGGCTTATGAAACGT+AGG | 0.624365 | 7_1:-71171877 | None:intergenic |
| CAGCAGAGCGAGAAATTGTG+AGG | 0.625485 | 7_1:+71170810 | Msa1035350:CDS |
| GTGTGATGTCGACATTAGGA+AGG | 0.626175 | 7_1:+71171054 | Msa1035350:CDS |
| ACACTGTACTTCCTCTCTGG+TGG | 0.626941 | 7_1:-71171196 | None:intergenic |
| TTGCGACAACGGAACCGGCA+TGG | 0.628011 | 7_1:+71169317 | Msa1035350:CDS |
| TGGGGATGGTGTTAGTCACA+CGG | 0.632223 | 7_1:+71170667 | Msa1035350:CDS |
| GTGGACGTCCTACTATGCTA+GGG | 0.634198 | 7_1:-71169606 | None:intergenic |
| TCCAAACGAAGGATTGCATG+TGG | 0.636575 | 7_1:-71170716 | None:intergenic |
| ATGCTTCTAAGTTCAAATCA+CGG | 0.637328 | 7_1:+71171491 | Msa1035350:exon |
| CCAGCCGTCCATGATCGGGA+TGG | 0.642703 | 7_1:+71170988 | Msa1035350:CDS |
| GATGGACAGGTAATCACGAT+CGG | 0.642938 | 7_1:+71170932 | Msa1035350:CDS |
| TATTGCTGATAGGATGAGCA+AGG | 0.645350 | 7_1:+71171126 | Msa1035350:CDS |
| CTGGGCCATCAATAGTACAC+AGG | 0.648814 | 7_1:+71171466 | Msa1035350:CDS |
| GTAGGACGTCCACGTCACAC+AGG | 0.654094 | 7_1:+71169616 | Msa1035350:CDS |
| TGTGCAGATGTGGATTGCAA+AGG | 0.658163 | 7_1:+71171428 | Msa1035350:intron |
| GATGAAGCACAATCAAAGAG+AGG | 0.658995 | 7_1:+71169679 | Msa1035350:CDS |
| CACACGGTTCCTATTTACGA+GGG | 0.661422 | 7_1:+71170683 | Msa1035350:CDS |
| TTGCAGGAGATGATGCACCA+AGG | 0.664250 | 7_1:+71169575 | Msa1035350:CDS |
| AGCAGAGCGAGAAATTGTGA+GGG | 0.666151 | 7_1:+71170811 | Msa1035350:CDS |
| CATCTCTACAACAAAATGAG+GGG | 0.666777 | 7_1:-71171703 | None:intergenic |
| TCACACGGTTCCTATTTACG+AGG | 0.670052 | 7_1:+71170682 | Msa1035350:CDS |
| GTGCTTCAGTGAGAAGAACA+GGG | 0.670285 | 7_1:-71169816 | None:intergenic |
| ATTTGTTGAAGAAACAGACA+CGG | 0.677318 | 7_1:-71169254 | None:intergenic |
| AGGTTGTAGCACCACCAGAG+AGG | 0.701742 | 7_1:+71171185 | Msa1035350:CDS |
| TCATCCTATCAGCAATACCA+GGG | 0.706641 | 7_1:-71171120 | None:intergenic |
| GACCTGCAAGATCCAAACGA+AGG | 0.709052 | 7_1:-71170727 | None:intergenic |
| TGTTGAAGAAACAGACACGG+AGG | 0.741382 | 7_1:-71169251 | None:intergenic |
| AGGACGTCCACGTCACACAG+GGG | 0.764581 | 7_1:+71169618 | Msa1035350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTCAAGTTATTAT+CGG | + | chr7_1:71169467-71169486 | Msa1035350:intron | 10.0% |
| !!! | TCTAATTTTTTTTTTTTACA+GGG | - | chr7_1:71170176-71170195 | None:intergenic | 10.0% |
| !!! | ATCTAATTTTTTTTTTTTAC+AGG | - | chr7_1:71170177-71170196 | None:intergenic | 10.0% |
| !!! | TGTAAAAAAAAAATAGTTTT+TGG | - | chr7_1:71170370-71170389 | None:intergenic | 10.0% |
| !! | ATAATTTAAAGGCTAAAATA+TGG | + | chr7_1:71170113-71170132 | Msa1035350:intron | 15.0% |
| !! | AAAACAAAAAAAAATTTGCA+GGG | - | chr7_1:71170206-71170225 | None:intergenic | 15.0% |
| !! | AAAAACAAAAAAAAATTTGC+AGG | - | chr7_1:71170207-71170226 | None:intergenic | 15.0% |
| !!! | TTTTAAATTAGGCTAAAATA+TGG | - | chr7_1:71170434-71170453 | None:intergenic | 15.0% |
| !!! | TTTTAGCCTAATTTAAAAAA+TGG | + | chr7_1:71170436-71170455 | Msa1035350:intron | 15.0% |
| !!! | TTACTTCCATTTTTTAAATT+AGG | - | chr7_1:71170445-71170464 | None:intergenic | 15.0% |
| !! | ATAATTTATGTTTATCAAGT+TGG | - | chr7_1:71171895-71171914 | None:intergenic | 15.0% |
| !!! | TATGGATTTAACTGTTTTTT+TGG | + | chr7_1:71169536-71169555 | Msa1035350:intron | 20.0% |
| !!! | TTTAGCCTTTAAATTATTAC+CGG | - | chr7_1:71170110-71170129 | None:intergenic | 20.0% |
| !!! | TTTTTTAAAATAGTCCTTGA+AGG | + | chr7_1:71170222-71170241 | Msa1035350:intron | 20.0% |
| !!! | TTTTTAAAATAGTCCTTGAA+GGG | + | chr7_1:71170223-71170242 | Msa1035350:intron | 20.0% |
| !!! | TCAAAATCAAAATATTTTGC+AGG | + | chr7_1:71170253-71170272 | Msa1035350:intron | 20.0% |
| !!! | CAAAATCAAAATATTTTGCA+GGG | + | chr7_1:71170254-71170273 | Msa1035350:intron | 20.0% |
| !! | GATAATTCAGTAAATAAATC+AGG | + | chr7_1:71171288-71171307 | Msa1035350:intron | 20.0% |
| !!! | TTTTCAAGTTATTATCGGTT+TGG | + | chr7_1:71169472-71169491 | Msa1035350:intron | 25.0% |
| !!! | ACTGTTTTTTTGGTTGTTTT+AGG | + | chr7_1:71169546-71169565 | Msa1035350:intron | 25.0% |
| ! | AAACACCGGTAATAATTTAA+AGG | + | chr7_1:71170102-71170121 | Msa1035350:intron | 25.0% |
| !! | TGAACCTATTTTGTAGTTTT+TGG | - | chr7_1:71170281-71170300 | None:intergenic | 25.0% |
| ! | AATTTCATTTCAACAAGTAC+AGG | + | chr7_1:71171312-71171331 | Msa1035350:intron | 25.0% |
| ! | ATAACAAATGTGTTATACTG+AGG | + | chr7_1:71171354-71171373 | Msa1035350:intron | 25.0% |
| ! | AATGGTAAAAGAATAGGAAA+TGG | - | chr7_1:71171594-71171613 | None:intergenic | 25.0% |
| ! | CAAAGAAATGGTAAAAGAAT+AGG | - | chr7_1:71171600-71171619 | None:intergenic | 25.0% |
| !! | TTTTCCTTTCTTGATATGTT+GGG | + | chr7_1:71171636-71171655 | Msa1035350:three_prime_UTR | 25.0% |
| !! | AATCTTTTCATTAAGTGTTC+TGG | + | chr7_1:71171761-71171780 | Msa1035350:three_prime_UTR | 25.0% |
| ! | ATTTGTTGAAGAAACAGACA+CGG | - | chr7_1:71169257-71169276 | None:intergenic | 30.0% |
| CTTCAACAAATCAACAACAA+TGG | + | chr7_1:71169266-71169285 | Msa1035350:exon | 30.0% | |
| ATAGGGAGAATTAAATGAGA+TGG | - | chr7_1:71169360-71169379 | None:intergenic | 30.0% | |
| ! | GTGTCTGTATCTCTATTTTA+TGG | + | chr7_1:71169518-71169537 | Msa1035350:intron | 30.0% |
| !!! | TTTTTTTGGTTGTTTTAGGC+TGG | + | chr7_1:71169550-71169569 | Msa1035350:intron | 30.0% |
| TGTTAGTAATTGGGATGATA+TGG | + | chr7_1:71169738-71169757 | Msa1035350:CDS | 30.0% | |
| !!! | ATTTTTTCACGATTAGCCTT+AGG | - | chr7_1:71169850-71169869 | None:intergenic | 30.0% |
| !! | TTTTGAAAATAGTCCCTTCA+AGG | - | chr7_1:71170239-71170258 | None:intergenic | 30.0% |
| ATGCAAATCATCACAAAAGT+AGG | + | chr7_1:71170318-71170337 | Msa1035350:intron | 30.0% | |
| TGCAAATCATCACAAAAGTA+GGG | + | chr7_1:71170319-71170338 | Msa1035350:intron | 30.0% | |
| GAATGTAATCACATATGTCT+TGG | + | chr7_1:71170475-71170494 | Msa1035350:intron | 30.0% | |
| ! | TGATTTACTGTGTTTTGTGT+AGG | + | chr7_1:71170629-71170648 | Msa1035350:intron | 30.0% |
| !! | GTTTTGTGTAGGTATTGTTT+TGG | + | chr7_1:71170640-71170659 | Msa1035350:intron | 30.0% |
| !!! | TAGGTATTGTTTTGGATTCT+GGG | + | chr7_1:71170648-71170667 | Msa1035350:intron | 30.0% |
| TTTCCAACAGGTAAATTTGA+TGG | + | chr7_1:71171255-71171274 | Msa1035350:intron | 30.0% | |
| AATCCATCAAATTTACCTGT+TGG | - | chr7_1:71171261-71171280 | None:intergenic | 30.0% | |
| AAGTACAGGTTATGAAAAGT+AGG | + | chr7_1:71171326-71171345 | Msa1035350:intron | 30.0% | |
| ATGCTTCTAAGTTCAAATCA+CGG | + | chr7_1:71171491-71171510 | Msa1035350:exon | 30.0% | |
| CTACAAAAATACCATCTAGT+TGG | + | chr7_1:71171557-71171576 | Msa1035350:three_prime_UTR | 30.0% | |
| GAGAAACGTAATCAAAGAAA+TGG | - | chr7_1:71171612-71171631 | None:intergenic | 30.0% | |
| ! | GTTTTCCTTTCTTGATATGT+TGG | + | chr7_1:71171635-71171654 | Msa1035350:three_prime_UTR | 30.0% |
| ATATCCCAACATATCAAGAA+AGG | - | chr7_1:71171643-71171662 | None:intergenic | 30.0% | |
| ACATCTCTACAACAAAATGA+GGG | - | chr7_1:71171707-71171726 | None:intergenic | 30.0% | |
| ! | GATGTGTATTGTTACTGATT+TGG | + | chr7_1:71171722-71171741 | Msa1035350:three_prime_UTR | 30.0% |
| ! | AATTGCTTTAGATACGATCC+TGG | - | chr7_1:71169124-71169143 | None:intergenic | 35.0% |
| !!! | GCGCTCTGTTGTTTTAAAAA+GGG | - | chr7_1:71169185-71169204 | None:intergenic | 35.0% |
| !!! | AGCGCTCTGTTGTTTTAAAA+AGG | - | chr7_1:71169186-71169205 | None:intergenic | 35.0% |
| !!! | AGCTTTTGATCAGAAGTGTT+GGG | - | chr7_1:71169384-71169403 | None:intergenic | 35.0% |
| GGACAAAAAGATGCATATGT+TGG | + | chr7_1:71169655-71169674 | Msa1035350:CDS | 35.0% | |
| TTGAAATACCCAATTGAGCA+TGG | + | chr7_1:71169712-71169731 | Msa1035350:CDS | 35.0% | |
| TGAAATACCCAATTGAGCAT+GGG | + | chr7_1:71169713-71169732 | Msa1035350:CDS | 35.0% | |
| TAACAATCCCATGCTCAATT+GGG | - | chr7_1:71169723-71169742 | None:intergenic | 35.0% | |
| AGCATGGGATTGTTAGTAAT+TGG | + | chr7_1:71169728-71169747 | Msa1035350:CDS | 35.0% | |
| GCATGGGATTGTTAGTAATT+GGG | + | chr7_1:71169729-71169748 | Msa1035350:CDS | 35.0% | |
| TGAATAGCAACATACATAGC+AGG | - | chr7_1:71169904-71169923 | None:intergenic | 35.0% | |
| CAAGATTGAAGGATAAACAC+CGG | + | chr7_1:71170088-71170107 | Msa1035350:intron | 35.0% | |
| GGGACCAAAAACTACAAAAT+AGG | + | chr7_1:71170274-71170293 | Msa1035350:intron | 35.0% | |
| TTTGCATACGTGACATATGA+TGG | - | chr7_1:71170305-71170324 | None:intergenic | 35.0% | |
| AATCATCACAAAAGTAGGGT+CGG | + | chr7_1:71170323-71170342 | Msa1035350:intron | 35.0% | |
| CAAAACGAGACATATTTGCA+GGG | + | chr7_1:71170401-71170420 | Msa1035350:intron | 35.0% | |
| TGTAATCACATATGTCTTGG+TGG | + | chr7_1:71170478-71170497 | Msa1035350:intron | 35.0% | |
| !!! | GTAGGTATTGTTTTGGATTC+TGG | + | chr7_1:71170647-71170666 | Msa1035350:intron | 35.0% |
| !!! | AGGTATTGTTTTGGATTCTG+GGG | + | chr7_1:71170649-71170668 | Msa1035350:intron | 35.0% |
| AGAAATTGTGAGGGATATGA+AGG | + | chr7_1:71170820-71170839 | Msa1035350:CDS | 35.0% | |
| TATTGCTCTTGATTATGAGC+AGG | + | chr7_1:71170856-71170875 | Msa1035350:CDS | 35.0% | |
| TCGAGTTAAATGTTGTCTCA+TGG | - | chr7_1:71171027-71171046 | None:intergenic | 35.0% | |
| TATGGTAACATTGTGTTGAG+TGG | + | chr7_1:71171082-71171101 | Msa1035350:CDS | 35.0% | |
| ACCTAGTAGCATGAAAATCA+AGG | + | chr7_1:71171165-71171184 | Msa1035350:CDS | 35.0% | |
| ! | ACCTTGATTTTCATGCTACT+AGG | - | chr7_1:71171169-71171188 | None:intergenic | 35.0% |
| TACAGGTTATGAAAAGTAGG+AGG | + | chr7_1:71171329-71171348 | Msa1035350:intron | 35.0% | |
| AAGGCAGAATATGATGAATC+TGG | + | chr7_1:71171447-71171466 | Msa1035350:CDS | 35.0% | |
| AGGCAGAATATGATGAATCT+GGG | + | chr7_1:71171448-71171467 | Msa1035350:CDS | 35.0% | |
| CATTTCCTGTGTACTATTGA+TGG | - | chr7_1:71171474-71171493 | None:intergenic | 35.0% | |
| AAATACCATCTAGTTGGTTG+AGG | + | chr7_1:71171563-71171582 | Msa1035350:three_prime_UTR | 35.0% | |
| CATCTCTACAACAAAATGAG+GGG | - | chr7_1:71171706-71171725 | None:intergenic | 35.0% | |
| CACATCTCTACAACAAAATG+AGG | - | chr7_1:71171708-71171727 | None:intergenic | 35.0% | |
| !!! | GCTTTTGATCAGAAGTGTTG+GGG | - | chr7_1:71169383-71169402 | None:intergenic | 40.0% |
| !! | GAGCTTTTGATCAGAAGTGT+TGG | - | chr7_1:71169385-71169404 | None:intergenic | 40.0% |
| !!! | TTGTTTTAGGCTGGTTTTGC+AGG | + | chr7_1:71169559-71169578 | Msa1035350:intron | 40.0% |
| GATGAAGCACAATCAAAGAG+AGG | + | chr7_1:71169679-71169698 | Msa1035350:CDS | 40.0% | |
| CTAACAATCCCATGCTCAAT+TGG | - | chr7_1:71169724-71169743 | None:intergenic | 40.0% | |
| ! | TGAAGCACCTCTTAATCCTA+AGG | + | chr7_1:71169831-71169850 | Msa1035350:CDS | 40.0% |
| !! | CGATTAGCCTTAGGATTAAG+AGG | - | chr7_1:71169841-71169860 | None:intergenic | 40.0% |
| CGGTGTTTATCCTTCAATCT+TGG | - | chr7_1:71170090-71170109 | None:intergenic | 40.0% | |
| CCAAAACGAGACATATTTGC+AGG | - | chr7_1:71170400-71170419 | None:intergenic | 40.0% | |
| ! | CCTGCAAATATGTCTCGTTT+TGG | + | chr7_1:71170143-71170162 | Msa1035350:intron | 40.0% |
| ! | CCTGCAAATATGTCTCGTTT+TGG | - | chr7_1:71170143-71170162 | None:intergenic | 40.0% |
| CCAAAACGAGACATATTTGC+AGG | + | chr7_1:71170400-71170419 | Msa1035350:intron | 40.0% | |
| ! | AGTATGTAGCATCGAAACGT+TGG | - | chr7_1:71170525-71170544 | None:intergenic | 40.0% |
| !!! | ATTGTTTTGGATTCTGGGGA+TGG | + | chr7_1:71170653-71170672 | Msa1035350:CDS | 40.0% |
| AGTGCATATCCCTCGTAAAT+AGG | - | chr7_1:71170695-71170714 | None:intergenic | 40.0% | |
| !! | ATGAAGATTTTAACCGAGCG+TGG | + | chr7_1:71170770-71170789 | Msa1035350:CDS | 40.0% |
| GAGGGATATGAAGGAGAAAT+TGG | + | chr7_1:71170829-71170848 | Msa1035350:CDS | 40.0% | |
| AATGTTGTCTCATGGATACC+AGG | - | chr7_1:71171019-71171038 | None:intergenic | 40.0% | |
| TGAAGTGTGATGTCGACATT+AGG | + | chr7_1:71171050-71171069 | Msa1035350:CDS | 40.0% | |
| GACATTAGGAAGGATCTCTA+TGG | + | chr7_1:71171064-71171083 | Msa1035350:CDS | 40.0% | |
| TCATCCTATCAGCAATACCA+GGG | - | chr7_1:71171123-71171142 | None:intergenic | 40.0% | |
| TATTGCTGATAGGATGAGCA+AGG | + | chr7_1:71171126-71171145 | Msa1035350:CDS | 40.0% | |
| !!! | CACTTTTTCTTGTGCAGATG+TGG | + | chr7_1:71171418-71171437 | Msa1035350:intron | 40.0% |
| AAGTTCCTCAACCAACTAGA+TGG | - | chr7_1:71171571-71171590 | None:intergenic | 40.0% | |
| ! | AAGTGTTCTGGTTGTCATAG+TGG | + | chr7_1:71171773-71171792 | Msa1035350:three_prime_UTR | 40.0% |
| ! | CAAGTTGGCTTATGAAACGT+AGG | - | chr7_1:71171880-71171899 | None:intergenic | 40.0% |
| TGTTGAAGAAACAGACACGG+AGG | - | chr7_1:71169254-71169273 | None:intergenic | 45.0% | |
| GTTCCGTTGTCGCAAACTAA+GGG | - | chr7_1:71169312-71169331 | None:intergenic | 45.0% | |
| !! | TTAGTTTGCGACAACGGAAC+CGG | + | chr7_1:71169312-71169331 | Msa1035350:CDS | 45.0% |
| GATTGATACCTTGACCATGC+CGG | - | chr7_1:71169334-71169353 | None:intergenic | 45.0% | |
| !! | GATCAGAAGTGTTGGGGATA+GGG | - | chr7_1:71169377-71169396 | None:intergenic | 45.0% |
| !! | TGATCAGAAGTGTTGGGGAT+AGG | - | chr7_1:71169378-71169397 | None:intergenic | 45.0% |
| TCTGATCAAAAGCTCGTGTC+TGG | + | chr7_1:71169390-71169409 | Msa1035350:intron | 45.0% | |
| AATAGAGATACAGACACCGC+CGG | - | chr7_1:71169515-71169534 | None:intergenic | 45.0% | |
| GCAGTATTCCCTAGCATAGT+AGG | + | chr7_1:71169598-71169617 | Msa1035350:CDS | 45.0% | |
| ! | ACAGGGGTAATGGTTGGAAT+GGG | + | chr7_1:71169634-71169653 | Msa1035350:CDS | 45.0% |
| GGGATGATATGGAGAAGATC+TGG | + | chr7_1:71169749-71169768 | Msa1035350:CDS | 45.0% | |
| ! | AGAAGAACAGGGTGTTCTTC+AGG | - | chr7_1:71169808-71169827 | None:intergenic | 45.0% |
| GTGCTTCAGTGAGAAGAACA+GGG | - | chr7_1:71169819-71169838 | None:intergenic | 45.0% | |
| GTGCTTTCACTTTATGCGAG+TGG | + | chr7_1:71169928-71169947 | Msa1035350:CDS | 45.0% | |
| ACACACGACACCAAGATTGA+AGG | + | chr7_1:71170077-71170096 | Msa1035350:intron | 45.0% | |
| ! | GCCATGTGATGATGCAAACT+AGG | + | chr7_1:71170582-71170601 | Msa1035350:intron | 45.0% |
| ! | GCCTAGTTTGCATCATCACA+TGG | - | chr7_1:71170586-71170605 | None:intergenic | 45.0% |
| TCACACGGTTCCTATTTACG+AGG | + | chr7_1:71170682-71170701 | Msa1035350:CDS | 45.0% | |
| CACACGGTTCCTATTTACGA+GGG | + | chr7_1:71170683-71170702 | Msa1035350:CDS | 45.0% | |
| TCCACATGCAATCCTTCGTT+TGG | + | chr7_1:71170715-71170734 | Msa1035350:CDS | 45.0% | |
| TCCAAACGAAGGATTGCATG+TGG | - | chr7_1:71170719-71170738 | None:intergenic | 45.0% | |
| ATCCTTCGTTTGGATCTTGC+AGG | + | chr7_1:71170725-71170744 | Msa1035350:CDS | 45.0% | |
| AATTTCTCGCTCTGCTGAAG+TGG | - | chr7_1:71170807-71170826 | None:intergenic | 45.0% | |
| AGCAGAGCGAGAAATTGTGA+GGG | + | chr7_1:71170811-71170830 | Msa1035350:CDS | 45.0% | |
| AAGACCTATGAGCTACCTGA+TGG | + | chr7_1:71170914-71170933 | Msa1035350:CDS | 45.0% | |
| ATCGTGATTACCTGTCCATC+AGG | - | chr7_1:71170932-71170951 | None:intergenic | 45.0% | |
| GATGGACAGGTAATCACGAT+CGG | + | chr7_1:71170932-71170951 | Msa1035350:CDS | 45.0% | |
| GGAACAAAACTTCTGGGCAT+CGG | - | chr7_1:71170970-71170989 | None:intergenic | 45.0% | |
| ACGGCTGGAACAAAACTTCT+GGG | - | chr7_1:71170976-71170995 | None:intergenic | 45.0% | |
| GTGTGATGTCGACATTAGGA+AGG | + | chr7_1:71171054-71171073 | Msa1035350:CDS | 45.0% | |
| GGTAACATTGTGTTGAGTGG+TGG | + | chr7_1:71171085-71171104 | Msa1035350:CDS | 45.0% | |
| TGTTCCCTGGTATTGCTGAT+AGG | + | chr7_1:71171116-71171135 | Msa1035350:CDS | 45.0% | |
| CTCATCCTATCAGCAATACC+AGG | - | chr7_1:71171124-71171143 | None:intergenic | 45.0% | |
| GAGCAAGGAGATTACAGCAT+TGG | + | chr7_1:71171141-71171160 | Msa1035350:CDS | 45.0% | |
| ! | AGGAAGTACAGTGTCTGGAT+TGG | + | chr7_1:71171205-71171224 | Msa1035350:CDS | 45.0% |
| ! | AAGTACAGTGTCTGGATTGG+AGG | + | chr7_1:71171208-71171227 | Msa1035350:CDS | 45.0% |
| !! | CTGGATTGGAGGTTCCATTT+TGG | + | chr7_1:71171219-71171238 | Msa1035350:CDS | 45.0% |
| ! | AGTGCTGAGAGATGCCAAAA+TGG | - | chr7_1:71171236-71171255 | None:intergenic | 45.0% |
| ATCTCTCAGCACTTTCCAAC+AGG | + | chr7_1:71171243-71171262 | Msa1035350:CDS | 45.0% | |
| ! | TGTGCAGATGTGGATTGCAA+AGG | + | chr7_1:71171428-71171447 | Msa1035350:intron | 45.0% |
| !!! | AAAAAAAAAAAATTAGATTT+TGG | + | chr7_1:71170179-71170198 | Msa1035350:intron | 5.0% |
| TTAGATACGATCCTGGCCGT+CGG | - | chr7_1:71169117-71169136 | None:intergenic | 50.0% | |
| GAAGAAACAGACACGGAGGA+AGG | - | chr7_1:71169250-71169269 | None:intergenic | 50.0% | |
| !! | CAGCCCTTAGTTTGCGACAA+CGG | + | chr7_1:71169306-71169325 | Msa1035350:CDS | 50.0% |
| GGTTCCGTTGTCGCAAACTA+AGG | - | chr7_1:71169313-71169332 | None:intergenic | 50.0% | |
| TGTCCGACACAGATCAGTGT+CGG | + | chr7_1:71169413-71169432 | Msa1035350:intron | 50.0% | |
| TGTCCGACACTGATCTGTGT+CGG | - | chr7_1:71169419-71169438 | None:intergenic | 50.0% | |
| GGATGTGTCAGTGTCGTATC+CGG | + | chr7_1:71169493-71169512 | Msa1035350:intron | 50.0% | |
| TTGCAGGAGATGATGCACCA+AGG | + | chr7_1:71169575-71169594 | Msa1035350:CDS | 50.0% | |
| TGCAGGAGATGATGCACCAA+GGG | + | chr7_1:71169576-71169595 | Msa1035350:CDS | 50.0% | |
| ATGCTAGGGAATACTGCCCT+TGG | - | chr7_1:71169595-71169614 | None:intergenic | 50.0% | |
| GTGGACGTCCTACTATGCTA+GGG | - | chr7_1:71169609-71169628 | None:intergenic | 50.0% | |
| ! | CACAGGGGTAATGGTTGGAA+TGG | + | chr7_1:71169633-71169652 | Msa1035350:CDS | 50.0% |
| GGTGCTTCAGTGAGAAGAAC+AGG | - | chr7_1:71169820-71169839 | None:intergenic | 50.0% | |
| TATGCGAGTGGTCGTACAAC+TGG | + | chr7_1:71169940-71169959 | Msa1035350:CDS | 50.0% | |
| !! | CAATCTTGGTGTCGTGTGTC+TGG | - | chr7_1:71170076-71170095 | None:intergenic | 50.0% |
| ! | TGGGGATGGTGTTAGTCACA+CGG | + | chr7_1:71170667-71170686 | Msa1035350:CDS | 50.0% |
| GACCTGCAAGATCCAAACGA+AGG | - | chr7_1:71170730-71170749 | None:intergenic | 50.0% | |
| CAGCAGAGCGAGAAATTGTG+AGG | + | chr7_1:71170810-71170829 | Msa1035350:CDS | 50.0% | |
| CTGTCCATCAGGTAGCTCAT+AGG | - | chr7_1:71170921-71170940 | None:intergenic | 50.0% | |
| ! | CTATGAGCTACCTGATGGAC+AGG | + | chr7_1:71170919-71170938 | Msa1035350:CDS | 50.0% |
| GACGGCTGGAACAAAACTTC+TGG | - | chr7_1:71170977-71170996 | None:intergenic | 50.0% | |
| TTGTTCCAGCCGTCCATGAT+CGG | + | chr7_1:71170983-71171002 | Msa1035350:CDS | 50.0% | |
| GATTCCATCCCGATCATGGA+CGG | - | chr7_1:71170995-71171014 | None:intergenic | 50.0% | |
| AGGAGATTCCATCCCGATCA+TGG | - | chr7_1:71170999-71171018 | None:intergenic | 50.0% | |
| ATGATCGGGATGGAATCTCC+TGG | + | chr7_1:71170998-71171017 | Msa1035350:CDS | 50.0% | |
| GGTGGTTCAACAATGTTCCC+TGG | + | chr7_1:71171103-71171122 | Msa1035350:CDS | 50.0% | |
| ACACTGTACTTCCTCTCTGG+TGG | - | chr7_1:71171199-71171218 | None:intergenic | 50.0% | |
| CAGACACTGTACTTCCTCTC+TGG | - | chr7_1:71171202-71171221 | None:intergenic | 50.0% | |
| ! | CAGAGAGGAAGTACAGTGTC+TGG | + | chr7_1:71171200-71171219 | Msa1035350:CDS | 50.0% |
| CTGGGCCATCAATAGTACAC+AGG | + | chr7_1:71171466-71171485 | Msa1035350:CDS | 50.0% | |
| AAATCACGGTGCATGAGAGC+TGG | + | chr7_1:71171505-71171524 | Msa1035350:three_prime_UTR | 50.0% | |
| GGTGCATGAGAGCTGGATTA+AGG | + | chr7_1:71171512-71171531 | Msa1035350:three_prime_UTR | 50.0% | |
| TGTGTCAGTGTCGTATCCGG+CGG | + | chr7_1:71169496-71169515 | Msa1035350:intron | 55.0% | |
| CGTGGACGTCCTACTATGCT+AGG | - | chr7_1:71169610-71169629 | None:intergenic | 55.0% | |
| TAGGACGTCCACGTCACACA+GGG | + | chr7_1:71169617-71169636 | Msa1035350:CDS | 55.0% | |
| TCCACGTCACACAGGGGTAA+TGG | + | chr7_1:71169624-71169643 | Msa1035350:CDS | 55.0% | |
| ACCATTACCCCTGTGTGACG+TGG | - | chr7_1:71169628-71169647 | None:intergenic | 55.0% | |
| ! | CGTCACACAGGGGTAATGGT+TGG | + | chr7_1:71169628-71169647 | Msa1035350:CDS | 55.0% |
| ! | GGTGAAAGTGTAGCCACGCT+CGG | - | chr7_1:71170786-71170805 | None:intergenic | 55.0% |
| TGTTCCAGCCGTCCATGATC+GGG | + | chr7_1:71170984-71171003 | Msa1035350:CDS | 55.0% | |
| AGGTTGTAGCACCACCAGAG+AGG | + | chr7_1:71171185-71171204 | Msa1035350:CDS | 55.0% | |
| TTGCGACAACGGAACCGGCA+TGG | + | chr7_1:71169317-71169336 | Msa1035350:CDS | 60.0% | |
| CAACGGAACCGGCATGGTCA+AGG | + | chr7_1:71169323-71169342 | Msa1035350:CDS | 60.0% | |
| GTAGGACGTCCACGTCACAC+AGG | + | chr7_1:71169616-71169635 | Msa1035350:CDS | 60.0% | |
| AGGACGTCCACGTCACACAG+GGG | + | chr7_1:71169618-71169637 | Msa1035350:CDS | 60.0% | |
| CCATCCCGATCATGGACGGC+TGG | - | chr7_1:71170991-71171010 | None:intergenic | 65.0% | |
| CCAGCCGTCCATGATCGGGA+TGG | + | chr7_1:71170988-71171007 | Msa1035350:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 71169114 | 71171920 | 71169114 | ID=Msa1035350;Name=Msa1035350 |
| chr7_1 | mRNA | 71169114 | 71171920 | 71169114 | ID=Msa1035350-mRNA-1;Parent=Msa1035350;Name=Msa1035350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=171|1|1|1|1|1|4|420|377 |
| chr7_1 | exon | 71169114 | 71169344 | 71169114 | ID=Msa1035350-mRNA-1:exon:17124;Parent=Msa1035350-mRNA-1 |
| chr7_1 | exon | 71169568 | 71169961 | 71169568 | ID=Msa1035350-mRNA-1:exon:17125;Parent=Msa1035350-mRNA-1 |
| chr7_1 | exon | 71170651 | 71171264 | 71170651 | ID=Msa1035350-mRNA-1:exon:17126;Parent=Msa1035350-mRNA-1 |
| chr7_1 | exon | 71171435 | 71171920 | 71171435 | ID=Msa1035350-mRNA-1:exon:17127;Parent=Msa1035350-mRNA-1 |
| chr7_1 | five_prime_UTR | 71169114 | 71169284 | 71169114 | ID=Msa1035350-mRNA-1:five_prime_utr;Parent=Msa1035350-mRNA-1 |
| chr7_1 | CDS | 71169285 | 71169344 | 71169285 | ID=Msa1035350-mRNA-1:cds;Parent=Msa1035350-mRNA-1 |
| chr7_1 | CDS | 71169568 | 71169961 | 71169568 | ID=Msa1035350-mRNA-1:cds;Parent=Msa1035350-mRNA-1 |
| chr7_1 | CDS | 71170651 | 71171264 | 71170651 | ID=Msa1035350-mRNA-1:cds;Parent=Msa1035350-mRNA-1 |
| chr7_1 | CDS | 71171435 | 71171500 | 71171435 | ID=Msa1035350-mRNA-1:cds;Parent=Msa1035350-mRNA-1 |
| chr7_1 | three_prime_UTR | 71171501 | 71171920 | 71171501 | ID=Msa1035350-mRNA-1:three_prime_utr;Parent=Msa1035350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
