Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116400 | XP_003625265.1 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 785 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116400 | sp|P46258|ACT3_PEA | 98.939 | 377 | 4 | 0 | 1 | 377 | 1 | 377 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116400 | G7KVE1 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 785 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036890 | Msa1116400 | 0.815839 | 7.524735e-52 | -8.615850e-47 |
| Msa0052870 | Msa1116400 | 0.801030 | 1.091261e-48 | -8.615850e-47 |
| Msa0084970 | Msa1116400 | 0.821431 | 4.051626e-53 | -8.615850e-47 |
| Msa0089980 | Msa1116400 | 0.803138 | 4.021890e-49 | -8.615850e-47 |
| Msa0090010 | Msa1116400 | 0.804666 | 1.936314e-49 | -8.615850e-47 |
| Msa0106620 | Msa1116400 | 0.804256 | 2.356712e-49 | -8.615850e-47 |
| Msa0626270 | Msa1116400 | 0.801547 | 8.551041e-49 | -8.615850e-47 |
| Msa0626460 | Msa1116400 | 0.809066 | 2.273221e-50 | -8.615850e-47 |
| Msa0630940 | Msa1116400 | 0.850968 | 1.204287e-60 | -8.615850e-47 |
| Msa0655920 | Msa1116400 | 0.806782 | 6.959553e-50 | -8.615850e-47 |
| Msa0669180 | Msa1116400 | 0.818713 | 1.698357e-52 | -8.615850e-47 |
| Msa0692880 | Msa1116400 | 0.820559 | 6.434589e-53 | -8.615850e-47 |
| Msa0706760 | Msa1116400 | 0.819349 | 1.217156e-52 | -8.615850e-47 |
| Msa0751260 | Msa1116400 | 0.800253 | 1.571859e-48 | -8.615850e-47 |
| Msa0176900 | Msa1116400 | 0.814161 | 1.774143e-51 | -8.615850e-47 |
| Msa0230370 | Msa1116400 | 0.814203 | 1.736615e-51 | -8.615850e-47 |
| Msa1027990 | Msa1116400 | 0.822565 | 2.212939e-53 | -8.615850e-47 |
| Msa1035350 | Msa1116400 | 0.973836 | 4.157166e-137 | -8.615850e-47 |
| Msa1085330 | Msa1116400 | 0.840880 | 6.660528e-58 | -8.615850e-47 |
| Msa0241610 | Msa1116400 | 0.803099 | 4.097570e-49 | -8.615850e-47 |
| Msa0328730 | Msa1116400 | 0.823244 | 1.537404e-53 | -8.615850e-47 |
| Msa1116400 | Msa1155900 | 0.812605 | 3.896923e-51 | -8.615850e-47 |
| Msa1116400 | Msa1205790 | 0.813794 | 2.136778e-51 | -8.615850e-47 |
| Msa1116400 | Msa1205830 | 0.810550 | 1.090226e-50 | -8.615850e-47 |
| Msa1116400 | Msa1267040 | 0.802365 | 5.808429e-49 | -8.615850e-47 |
| Msa1116400 | Msa1267170 | 0.802596 | 5.203511e-49 | -8.615850e-47 |
| Msa1116400 | Msa1348090 | 0.826452 | 2.692204e-54 | -8.615850e-47 |
| Msa1116400 | Msa1393820 | 0.809862 | 1.533836e-50 | -8.615850e-47 |
| Msa1116400 | Msa1427110 | 0.823791 | 1.145375e-53 | -8.615850e-47 |
| Msa1116400 | Msa1440960 | 0.800468 | 1.421057e-48 | -8.615850e-47 |
| Msa1116400 | Msa1459460 | 0.827064 | 1.922888e-54 | -8.615850e-47 |
| Msa0519760 | Msa1116400 | 0.818714 | 1.697240e-52 | -8.615850e-47 |
| Msa0519840 | Msa1116400 | 0.818301 | 2.105689e-52 | -8.615850e-47 |
| Msa0534400 | Msa1116400 | 0.841312 | 5.128208e-58 | -8.615850e-47 |
| Msa0549360 | Msa1116400 | 0.804401 | 2.199354e-49 | -8.615850e-47 |
| Msa0555860 | Msa1116400 | -0.801226 | 9.949428e-49 | -8.615850e-47 |
| Msa0571290 | Msa1116400 | 0.801277 | 9.715970e-49 | -8.615850e-47 |
| Msa0572750 | Msa1116400 | 0.815479 | 9.050146e-52 | -8.615850e-47 |
| Msa0590640 | Msa1116400 | 0.807352 | 5.270847e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116400 | MtrunA17_Chr7g0258721 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 785 |
| Msa1116400 | MtrunA17_Chr1g0175391 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 769 |
| Msa1116400 | MtrunA17_Chr2g0328091 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 765 |
| Msa1116400 | MtrunA17_Chr6g0448881 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa1116400 | MtrunA17_Chr3g0129641 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa1116400 | MtrunA17_Chr7g0223901 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa1116400 | MtrunA17_Chr2g0278591 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa1116400 | MtrunA17_Chr7g0224401 | 43.799 | 379 | 199 | 3 | 10 | 374 | 7 | 385 | 1.58e-120 | 354 |
| Msa1116400 | MtrunA17_Chr5g0427591 | 36.996 | 446 | 208 | 11 | 1 | 376 | 1 | 443 | 3.95e-92 | 283 |
| Msa1116400 | MtrunA17_Chr8g0361001 | 36.996 | 446 | 208 | 11 | 1 | 376 | 1 | 443 | 5.58e-92 | 283 |
| Msa1116400 | MtrunA17_Chr8g0381261 | 34.845 | 419 | 207 | 10 | 10 | 372 | 10 | 418 | 7.50e-72 | 230 |
| Msa1116400 | MtrunA17_Chr3g0089031 | 37.766 | 376 | 208 | 9 | 11 | 377 | 5 | 363 | 1.94e-68 | 219 |
| Msa1116400 | MtrunA17_Chr2g0305361 | 27.854 | 438 | 250 | 7 | 4 | 377 | 2 | 437 | 2.74e-57 | 192 |
| Msa1116400 | MtrunA17_Chr3g0080021 | 30.303 | 297 | 183 | 9 | 91 | 371 | 179 | 467 | 1.14e-39 | 146 |
| Msa1116400 | MtrunA17_Chr8g0369101 | 31.058 | 293 | 175 | 10 | 91 | 366 | 187 | 469 | 1.87e-35 | 135 |
| Msa1116400 | MtrunA17_Chr3g0111971 | 29.762 | 252 | 158 | 7 | 9 | 245 | 21 | 268 | 2.77e-23 | 101 |
| Msa1116400 | MtrunA17_Chr3g0111971 | 34.426 | 122 | 77 | 2 | 250 | 368 | 586 | 707 | 6.54e-16 | 79.3 |
| Msa1116400 | MtrunA17_Chr8g0336071 | 40.000 | 95 | 57 | 0 | 105 | 199 | 1 | 95 | 3.56e-19 | 81.6 |
| Msa1116400 | MtrunA17_Chr8g0336061 | 42.391 | 92 | 40 | 2 | 241 | 319 | 12 | 103 | 2.41e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116400 | AT5G09810.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa1116400 | AT3G12110.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 760 |
| Msa1116400 | AT3G46520.2 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1116400 | AT3G46520.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1116400 | AT3G53750.1 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1116400 | AT3G53750.2 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1116400 | AT2G37620.1 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1116400 | AT2G37620.3 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1116400 | AT2G37620.2 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1116400 | AT2G37620.4 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa1116400 | AT5G59370.2 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 758 |
| Msa1116400 | AT5G59370.1 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 758 |
| Msa1116400 | AT3G18780.2 | 90.981 | 377 | 34 | 0 | 1 | 377 | 1 | 377 | 0.0 | 737 |
| Msa1116400 | AT3G18780.3 | 90.981 | 377 | 34 | 0 | 1 | 377 | 1 | 377 | 0.0 | 737 |
| Msa1116400 | AT1G49240.1 | 90.716 | 377 | 35 | 0 | 1 | 377 | 1 | 377 | 0.0 | 735 |
| Msa1116400 | AT3G18780.1 | 90.808 | 359 | 33 | 0 | 1 | 359 | 1 | 359 | 0.0 | 696 |
| Msa1116400 | AT2G42100.1 | 85.326 | 368 | 54 | 0 | 10 | 377 | 11 | 378 | 0.0 | 677 |
| Msa1116400 | AT2G42090.1 | 71.351 | 370 | 101 | 1 | 7 | 376 | 1 | 365 | 0.0 | 568 |
| Msa1116400 | AT2G42170.1 | 78.313 | 332 | 69 | 1 | 46 | 377 | 1 | 329 | 0.0 | 560 |
| Msa1116400 | AT2G42170.3 | 78.313 | 332 | 69 | 1 | 46 | 377 | 1 | 329 | 0.0 | 560 |
| Msa1116400 | AT2G42170.4 | 78.205 | 312 | 65 | 1 | 46 | 357 | 1 | 309 | 0.0 | 522 |
| Msa1116400 | AT2G42170.2 | 78.205 | 312 | 65 | 1 | 46 | 357 | 1 | 309 | 0.0 | 522 |
| Msa1116400 | AT2G42170.5 | 78.761 | 226 | 45 | 1 | 152 | 377 | 9 | 231 | 6.01e-132 | 377 |
| Msa1116400 | AT3G27000.1 | 44.591 | 379 | 196 | 4 | 10 | 374 | 7 | 385 | 2.71e-122 | 358 |
| Msa1116400 | AT1G18450.1 | 36.569 | 443 | 211 | 9 | 1 | 376 | 1 | 440 | 8.26e-94 | 288 |
| Msa1116400 | AT1G13180.1 | 34.615 | 416 | 212 | 11 | 10 | 372 | 9 | 417 | 7.23e-72 | 231 |
| Msa1116400 | AT3G60830.1 | 37.731 | 379 | 212 | 9 | 7 | 377 | 1 | 363 | 1.23e-67 | 218 |
| Msa1116400 | AT3G33520.1 | 30.166 | 421 | 236 | 7 | 10 | 377 | 5 | 420 | 7.18e-59 | 197 |
| Msa1116400 | AT5G56180.3 | 30.986 | 284 | 171 | 9 | 91 | 358 | 50 | 324 | 2.26e-34 | 130 |
| Msa1116400 | AT5G56180.1 | 30.986 | 284 | 171 | 9 | 91 | 358 | 182 | 456 | 1.23e-33 | 130 |
| Msa1116400 | AT3G12380.2 | 31.395 | 258 | 152 | 9 | 9 | 245 | 21 | 274 | 8.39e-26 | 109 |
| Msa1116400 | AT3G12380.2 | 33.103 | 145 | 93 | 2 | 228 | 368 | 572 | 716 | 3.24e-16 | 80.9 |
| Msa1116400 | AT3G12380.1 | 31.250 | 256 | 149 | 9 | 9 | 245 | 21 | 268 | 3.73e-25 | 107 |
| Msa1116400 | AT3G12380.1 | 33.103 | 145 | 93 | 2 | 228 | 368 | 566 | 710 | 3.26e-16 | 80.9 |
| Msa1116400 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.61e-23 | 95.1 |
| Msa1116400 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.61e-23 | 95.1 |
| Msa1116400 | AT5G56180.2 | 32.292 | 192 | 110 | 7 | 91 | 271 | 182 | 364 | 8.89e-19 | 87.4 |
| Msa1116400 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 3.26e-12 | 64.7 |
Find 116 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATGGGATTGTTAGTAAT+TGG | 0.164954 | 7_3:-63952209 | Msa1116400:CDS |
| CTGGATTGGAGGTTCCATTT+TGG | 0.195803 | 7_3:-63950716 | Msa1116400:CDS |
| GACGGCTGGAACAAAACTTC+TGG | 0.283900 | 7_3:+63950961 | None:intergenic |
| TGTTAGTAATTGGGATGATA+TGG | 0.286824 | 7_3:-63952199 | Msa1116400:CDS |
| AGAAGAACAGGGTGTTCTTC+AGG | 0.300324 | 7_3:+63952132 | None:intergenic |
| GAGGGATATGAAGGAGAAAT+TGG | 0.306130 | 7_3:-63951106 | Msa1116400:CDS |
| CATTTCCTGTGTACTATTGA+TGG | 0.320989 | 7_3:+63950464 | None:intergenic |
| ATCCTTCGTTTGGATCTTGC+AGG | 0.332165 | 7_3:-63951210 | Msa1116400:CDS |
| CTAACAATCCCATGCTCAAT+TGG | 0.332451 | 7_3:+63952216 | None:intergenic |
| AGTGCATATCCCTCGTAAAT+AGG | 0.333417 | 7_3:+63951243 | None:intergenic |
| GGTGCTTCAGTGAGAAGAAC+AGG | 0.346523 | 7_3:+63952120 | None:intergenic |
| GGTGCATGAGAGCTGGATTA+AGG | 0.354953 | 7_3:-63950423 | Msa1116400:three_prime_UTR |
| TCCACATGCAATCCTTCGTT+TGG | 0.359517 | 7_3:-63951220 | Msa1116400:CDS |
| AAGGCAGAATATGATGAATC+TGG | 0.369605 | 7_3:-63950488 | Msa1116400:CDS |
| CGATTAGCCTTAGGATTAAG+AGG | 0.392490 | 7_3:+63952099 | None:intergenic |
| CAAAGAAATGGTAAAAGAAT+AGG | 0.395590 | 7_3:+63950338 | None:intergenic |
| AGTGCTGAGAGATGCCAAAA+TGG | 0.400190 | 7_3:+63950702 | None:intergenic |
| GATGTGTATTGTTACTGATT+TGG | 0.407826 | 7_3:-63950213 | Msa1116400:three_prime_UTR |
| ATCTCTCAGCACTTTCCAAC+AGG | 0.421981 | 7_3:-63950692 | Msa1116400:intron |
| ATAATTTATGTTTATCAAGT+TGG | 0.424435 | 7_3:+63950042 | None:intergenic |
| TGAAGTGTGATGTCGACATT+AGG | 0.428549 | 7_3:-63950885 | Msa1116400:CDS |
| GGTTCCGTTGTCGCAAACTA+AGG | 0.435984 | 7_3:+63952626 | None:intergenic |
| TGTTCCAGCCGTCCATGATC+GGG | 0.440481 | 7_3:-63950951 | Msa1116400:CDS |
| AATGGTAAAAGAATAGGAAA+TGG | 0.440968 | 7_3:+63950344 | None:intergenic |
| TTGTTCCAGCCGTCCATGAT+CGG | 0.442160 | 7_3:-63950952 | Msa1116400:CDS |
| TATGCGAGTGGTCGTACAAC+TGG | 0.443707 | 7_3:-63951997 | Msa1116400:intron |
| GAGAAACGTAATCAAAGAAA+TGG | 0.444571 | 7_3:+63950326 | None:intergenic |
| GCAGTATTCCCTAGCATAGT+AGG | 0.445310 | 7_3:-63952339 | Msa1116400:CDS |
| GCATGGGATTGTTAGTAATT+GGG | 0.447989 | 7_3:-63952208 | Msa1116400:CDS |
| AAGTGTTCTGGTTGTCATAG+TGG | 0.453137 | 7_3:-63950162 | Msa1116400:three_prime_UTR |
| CTCATCCTATCAGCAATACC+AGG | 0.462364 | 7_3:+63950814 | None:intergenic |
| AGGAGATTCCATCCCGATCA+TGG | 0.463558 | 7_3:+63950939 | None:intergenic |
| GATATTCCAAACCGACGGTC+AGG | 0.466965 | 7_3:-63952843 | None:intergenic |
| ACGGCTGGAACAAAACTTCT+GGG | 0.468624 | 7_3:+63950962 | None:intergenic |
| TTAGTTTGCGACAACGGAAC+CGG | 0.471674 | 7_3:-63952624 | Msa1116400:CDS |
| CAGAGAGGAAGTACAGTGTC+TGG | 0.471867 | 7_3:-63950735 | Msa1116400:CDS |
| AAGTTCCTCAACCAACTAGA+TGG | 0.474313 | 7_3:+63950367 | None:intergenic |
| CACATCTCTACAACAAAATG+AGG | 0.474871 | 7_3:+63950230 | None:intergenic |
| TATTGCTCTTGATTATGAGC+AGG | 0.475672 | 7_3:-63951079 | Msa1116400:CDS |
| GGGATGATATGGAGAAGATC+TGG | 0.484705 | 7_3:-63952188 | Msa1116400:CDS |
| AGGAAGTACAGTGTCTGGAT+TGG | 0.485496 | 7_3:-63950730 | Msa1116400:CDS |
| GACATTAGGAAGGATCTCTA+TGG | 0.488078 | 7_3:-63950871 | Msa1116400:CDS |
| CAGACACTGTACTTCCTCTC+TGG | 0.493244 | 7_3:+63950736 | None:intergenic |
| AAATCACGGTGCATGAGAGC+TGG | 0.493439 | 7_3:-63950430 | Msa1116400:three_prime_UTR |
| CACAGGGGTAATGGTTGGAA+TGG | 0.495803 | 7_3:-63952304 | Msa1116400:CDS |
| AATTTCTCGCTCTGCTGAAG+TGG | 0.496387 | 7_3:+63951131 | None:intergenic |
| TAACAATCCCATGCTCAATT+GGG | 0.497649 | 7_3:+63952217 | None:intergenic |
| ATCGTGATTACCTGTCCATC+AGG | 0.500077 | 7_3:+63951006 | None:intergenic |
| AGAAATTGTGAGGGATATGA+AGG | 0.501249 | 7_3:-63951115 | Msa1116400:CDS |
| AAGTACAGTGTCTGGATTGG+AGG | 0.501277 | 7_3:-63950727 | Msa1116400:CDS |
| TGTTCCCTGGTATTGCTGAT+AGG | 0.501884 | 7_3:-63950819 | Msa1116400:CDS |
| CTGTCCATCAGGTAGCTCAT+AGG | 0.503008 | 7_3:+63951017 | None:intergenic |
| TCCACGTCACACAGGGGTAA+TGG | 0.512712 | 7_3:-63952313 | Msa1116400:CDS |
| CGTGGACGTCCTACTATGCT+AGG | 0.514609 | 7_3:+63952330 | None:intergenic |
| ACAGGGGTAATGGTTGGAAT+GGG | 0.516861 | 7_3:-63952303 | Msa1116400:CDS |
| CCATCCCGATCATGGACGGC+TGG | 0.529203 | 7_3:+63950947 | None:intergenic |
| TTGAAATACCCAATTGAGCA+TGG | 0.529351 | 7_3:-63952225 | Msa1116400:CDS |
| ATATCCCAACATATCAAGAA+AGG | 0.530216 | 7_3:+63950295 | None:intergenic |
| GTGCTTTCACTTTATGCGAG+TGG | 0.546070 | 7_3:-63952009 | Msa1116400:CDS |
| TGCAGGAGATGATGCACCAA+GGG | 0.547290 | 7_3:-63952361 | Msa1116400:CDS |
| GAGCAAGGAGATTACAGCAT+TGG | 0.550032 | 7_3:-63950794 | Msa1116400:CDS |
| TCGAGTTAAATGTTGTCTCA+TGG | 0.551870 | 7_3:+63950911 | None:intergenic |
| CTATGAGCTACCTGATGGAC+AGG | 0.554582 | 7_3:-63951016 | Msa1116400:CDS |
| CAGCCCTTAGTTTGCGACAA+CGG | 0.557180 | 7_3:-63952630 | Msa1116400:CDS |
| TGAATAGCAACATACATAGC+AGG | 0.559953 | 7_3:+63952036 | None:intergenic |
| GGAACAAAACTTCTGGGCAT+CGG | 0.561285 | 7_3:+63950968 | None:intergenic |
| AGGCAGAATATGATGAATCT+GGG | 0.564408 | 7_3:-63950487 | Msa1116400:CDS |
| TGAAGCACCTCTTAATCCTA+AGG | 0.566737 | 7_3:-63952106 | Msa1116400:CDS |
| CAACGGAACCGGCATGGTCA+AGG | 0.570249 | 7_3:-63952613 | Msa1116400:intron |
| AAATACCATCTAGTTGGTTG+AGG | 0.571614 | 7_3:-63950372 | Msa1116400:three_prime_UTR |
| AATGTTGTCTCATGGATACC+AGG | 0.572742 | 7_3:+63950919 | None:intergenic |
| ACCTAGTAGCATGAAAATCA+AGG | 0.573048 | 7_3:-63950770 | Msa1116400:CDS |
| GAAACAGACACAGATGATGA+AGG | 0.575681 | 7_3:+63952692 | None:intergenic |
| GGTGAAAGTGTAGCCACGCT+CGG | 0.575757 | 7_3:+63951152 | None:intergenic |
| TGAAATACCCAATTGAGCAT+GGG | 0.576183 | 7_3:-63952224 | Msa1116400:CDS |
| ATGCTAGGGAATACTGCCCT+TGG | 0.578562 | 7_3:+63952345 | None:intergenic |
| ACCATTACCCCTGTGTGACG+TGG | 0.580899 | 7_3:+63952312 | None:intergenic |
| ACATCTCTACAACAAAATGA+GGG | 0.581981 | 7_3:+63950231 | None:intergenic |
| GGTGGTTCAACAATGTTCCC+TGG | 0.583355 | 7_3:-63950832 | Msa1116400:CDS |
| CGTCACACAGGGGTAATGGT+TGG | 0.583763 | 7_3:-63952309 | Msa1116400:CDS |
| GTTCCGTTGTCGCAAACTAA+GGG | 0.584635 | 7_3:+63952627 | None:intergenic |
| TATGGTAACATTGTGTTGAG+TGG | 0.586496 | 7_3:-63950853 | Msa1116400:CDS |
| GATTGATACCTTGACCATGC+CGG | 0.591606 | 7_3:+63952605 | None:intergenic |
| GGTAACATTGTGTTGAGTGG+TGG | 0.592071 | 7_3:-63950850 | Msa1116400:CDS |
| ATGATCGGGATGGAATCTCC+TGG | 0.596212 | 7_3:-63950937 | Msa1116400:CDS |
| CTTCAACAAATCAACAACAA+TGG | 0.606654 | 7_3:-63952670 | Msa1116400:exon |
| TAGGACGTCCACGTCACACA+GGG | 0.610133 | 7_3:-63952320 | Msa1116400:CDS |
| GATTCCATCCCGATCATGGA+CGG | 0.611630 | 7_3:+63950943 | None:intergenic |
| AAGACCTATGAGCTACCTGA+TGG | 0.618966 | 7_3:-63951021 | Msa1116400:CDS |
| CAAGTTGGCTTATGAAACGT+AGG | 0.624365 | 7_3:+63950057 | None:intergenic |
| CAGCAGAGCGAGAAATTGTG+AGG | 0.625485 | 7_3:-63951125 | Msa1116400:CDS |
| GTGTGATGTCGACATTAGGA+AGG | 0.626175 | 7_3:-63950881 | Msa1116400:CDS |
| ACACTGTACTTCCTCTCTGG+TGG | 0.626941 | 7_3:+63950739 | None:intergenic |
| TTGCGACAACGGAACCGGCA+TGG | 0.628011 | 7_3:-63952619 | Msa1116400:CDS |
| GTGGACGTCCTACTATGCTA+GGG | 0.634198 | 7_3:+63952331 | None:intergenic |
| TCCAAACGAAGGATTGCATG+TGG | 0.636575 | 7_3:+63951219 | None:intergenic |
| ATGCTTCTAAGTTCAAATCA+CGG | 0.637328 | 7_3:-63950444 | Msa1116400:exon |
| CCAGCCGTCCATGATCGGGA+TGG | 0.642703 | 7_3:-63950947 | Msa1116400:CDS |
| GATGGACAGGTAATCACGAT+CGG | 0.642938 | 7_3:-63951003 | Msa1116400:CDS |
| TATTGCTGATAGGATGAGCA+AGG | 0.645350 | 7_3:-63950809 | Msa1116400:CDS |
| TGGGGACGGTGTTAGTCACA+CGG | 0.647081 | 7_3:-63951268 | Msa1116400:CDS |
| CTGGGCCATCAATAGTACAC+AGG | 0.648814 | 7_3:-63950469 | Msa1116400:CDS |
| GTAGGACGTCCACGTCACAC+AGG | 0.654094 | 7_3:-63952321 | Msa1116400:CDS |
| TGTGCAGATGTGGATTGCAA+AGG | 0.658163 | 7_3:-63950507 | Msa1116400:intron |
| TTAGATTCGATCCTGACCGT+CGG | 0.658308 | 7_3:+63952832 | None:intergenic |
| GATGAAGCACAATCAAAGAG+AGG | 0.658995 | 7_3:-63952258 | Msa1116400:CDS |
| CACACGGTTCCTATTTACGA+GGG | 0.661422 | 7_3:-63951252 | Msa1116400:CDS |
| TTGCAGGAGATGATGCACCA+AGG | 0.664250 | 7_3:-63952362 | Msa1116400:CDS |
| AGCAGAGCGAGAAATTGTGA+GGG | 0.666151 | 7_3:-63951124 | Msa1116400:CDS |
| CATCTCTACAACAAAATGAG+GGG | 0.666777 | 7_3:+63950232 | None:intergenic |
| TCACACGGTTCCTATTTACG+AGG | 0.670052 | 7_3:-63951253 | Msa1116400:CDS |
| GTGCTTCAGTGAGAAGAACA+GGG | 0.670285 | 7_3:+63952121 | None:intergenic |
| AGGTTGTAGCACCACCAGAG+AGG | 0.701742 | 7_3:-63950750 | Msa1116400:CDS |
| TCATCCTATCAGCAATACCA+GGG | 0.706641 | 7_3:+63950815 | None:intergenic |
| GACCTGCAAGATCCAAACGA+AGG | 0.709052 | 7_3:+63951208 | None:intergenic |
| AGGACGTCCACGTCACACAG+GGG | 0.764581 | 7_3:-63952319 | Msa1116400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTCAAGTTATTAT+CGG | - | chr7_3:63950399-63950418 | Msa1116400:three_prime_UTR | 10.0% |
| !!! | CTAATTTTTTTTTTTTTACA+GGG | + | chr7_3:63951107-63951126 | None:intergenic | 10.0% |
| !!! | TCTAATTTTTTTTTTTTTAC+AGG | + | chr7_3:63951108-63951127 | None:intergenic | 10.0% |
| !! | ATAATTTAAAGGCTAAAATA+TGG | - | chr7_3:63951044-63951063 | Msa1116400:CDS | 15.0% |
| !! | AAAAACAAAAAAAAATTGCA+GGG | + | chr7_3:63951138-63951157 | None:intergenic | 15.0% |
| !! | AAAAAACAAAAAAAAATTGC+AGG | + | chr7_3:63951139-63951158 | None:intergenic | 15.0% |
| !!! | TTTTAAATTAGGCTAAAATA+TGG | + | chr7_3:63951367-63951386 | None:intergenic | 15.0% |
| !!! | TTTTAGCCTAATTTAAAAAA+TGG | - | chr7_3:63951369-63951388 | Msa1116400:intron | 15.0% |
| !!! | TTACTTCCATTTTTTAAATT+AGG | + | chr7_3:63951378-63951397 | None:intergenic | 15.0% |
| !! | ATAATTTATGTTTATCAAGT+TGG | + | chr7_3:63952829-63952848 | None:intergenic | 15.0% |
| !!! | TTATGGATTTAACTGTTTTT+TGG | - | chr7_3:63950467-63950486 | Msa1116400:CDS | 20.0% |
| !!! | TTTAGCCTTTAAATTATTAC+CGG | + | chr7_3:63951041-63951060 | None:intergenic | 20.0% |
| !!! | TTTTTTAAAATAGTCCTTGA+AGG | - | chr7_3:63951153-63951172 | Msa1116400:CDS | 20.0% |
| !!! | TTTTTAAAATAGTCCTTGAA+GGG | - | chr7_3:63951154-63951173 | Msa1116400:CDS | 20.0% |
| !!! | TCAAAATCAAAATATTTTGC+AGG | - | chr7_3:63951184-63951203 | Msa1116400:CDS | 20.0% |
| !!! | CAAAATCAAAATATTTTGCA+GGG | - | chr7_3:63951185-63951204 | Msa1116400:CDS | 20.0% |
| !! | GATAATTCAGTAAATAAATC+AGG | - | chr7_3:63952221-63952240 | Msa1116400:CDS | 20.0% |
| !!! | TTTTCAAGTTATTATCGGTT+TGG | - | chr7_3:63950404-63950423 | Msa1116400:three_prime_UTR | 25.0% |
| !!! | AACTGTTTTTTGGTTGTTTT+AGG | - | chr7_3:63950477-63950496 | Msa1116400:CDS | 25.0% |
| ! | AAACACCGGTAATAATTTAA+AGG | - | chr7_3:63951033-63951052 | Msa1116400:CDS | 25.0% |
| !! | TGAACCTATTTTGTAGTTTT+TGG | + | chr7_3:63951212-63951231 | None:intergenic | 25.0% |
| ! | AATTTCATTTCAACAAGTAC+AGG | - | chr7_3:63952245-63952264 | Msa1116400:CDS | 25.0% |
| ! | ATAACAAATGTGTTATACTG+AGG | - | chr7_3:63952287-63952306 | Msa1116400:CDS | 25.0% |
| ! | AATGGTAAAAGAATAGGAAA+TGG | + | chr7_3:63952527-63952546 | None:intergenic | 25.0% |
| ! | CAAAGAAATGGTAAAAGAAT+AGG | + | chr7_3:63952533-63952552 | None:intergenic | 25.0% |
| !! | TTTTCCTTTCTTGATATGTT+GGG | - | chr7_3:63952569-63952588 | Msa1116400:intron | 25.0% |
| !! | AATCTTTTCATTAAGTGTTC+TGG | - | chr7_3:63952694-63952713 | Msa1116400:five_prime_UTR | 25.0% |
| !!! | TCTGTTGTTTTAAAAAGGGA+AGG | + | chr7_3:63950103-63950122 | None:intergenic | 30.0% |
| CTTCAACAAATCAACAACAA+TGG | - | chr7_3:63950198-63950217 | Msa1116400:three_prime_UTR | 30.0% | |
| ATAGGGAGAATTAAATGAGA+TGG | + | chr7_3:63950292-63950311 | None:intergenic | 30.0% | |
| ! | GTGTCTGTATCTCTATTTTA+TGG | - | chr7_3:63950450-63950469 | Msa1116400:exon | 30.0% |
| TGTTAGTAATTGGGATGATA+TGG | - | chr7_3:63950669-63950688 | Msa1116400:intron | 30.0% | |
| !!! | ATTTTTTCACGATTAGCCTT+AGG | + | chr7_3:63950781-63950800 | None:intergenic | 30.0% |
| !! | TTTTGAAAATAGTCCCTTCA+AGG | + | chr7_3:63951170-63951189 | None:intergenic | 30.0% |
| ATGCAAATCATCACAAAAGT+AGG | - | chr7_3:63951249-63951268 | Msa1116400:CDS | 30.0% | |
| TGCAAATCATCACAAAAGTA+GGG | - | chr7_3:63951250-63951269 | Msa1116400:CDS | 30.0% | |
| GAATGTAATCACATATGTCT+TGG | - | chr7_3:63951408-63951427 | Msa1116400:intron | 30.0% | |
| ! | TGATTTACTGTGTTTTGTGT+AGG | - | chr7_3:63951562-63951581 | Msa1116400:intron | 30.0% |
| !! | GTTTTGTGTAGGTATTGTTT+TGG | - | chr7_3:63951573-63951592 | Msa1116400:intron | 30.0% |
| !!! | TAGGTATTGTTTTGGATTCT+GGG | - | chr7_3:63951581-63951600 | Msa1116400:intron | 30.0% |
| TTTCCAACAGGTAAATTTGA+TGG | - | chr7_3:63952188-63952207 | Msa1116400:CDS | 30.0% | |
| AATCCATCAAATTTACCTGT+TGG | + | chr7_3:63952194-63952213 | None:intergenic | 30.0% | |
| AAGTACAGGTTATGAAAAGT+AGG | - | chr7_3:63952259-63952278 | Msa1116400:CDS | 30.0% | |
| ATGCTTCTAAGTTCAAATCA+CGG | - | chr7_3:63952424-63952443 | Msa1116400:intron | 30.0% | |
| CTACAAAAATACCATCTAGT+TGG | - | chr7_3:63952490-63952509 | Msa1116400:intron | 30.0% | |
| GAGAAACGTAATCAAAGAAA+TGG | + | chr7_3:63952545-63952564 | None:intergenic | 30.0% | |
| ! | GTTTTCCTTTCTTGATATGT+TGG | - | chr7_3:63952568-63952587 | Msa1116400:intron | 30.0% |
| ATATCCCAACATATCAAGAA+AGG | + | chr7_3:63952576-63952595 | None:intergenic | 30.0% | |
| ACATCTCTACAACAAAATGA+GGG | + | chr7_3:63952640-63952659 | None:intergenic | 30.0% | |
| ! | GATGTGTATTGTTACTGATT+TGG | - | chr7_3:63952655-63952674 | Msa1116400:exon | 30.0% |
| !!! | GCGCTCTGTTGTTTTAAAAA+GGG | + | chr7_3:63950107-63950126 | None:intergenic | 35.0% |
| !!! | GTTTTTTGGTTGTTTTAGGC+TGG | - | chr7_3:63950481-63950500 | Msa1116400:CDS | 35.0% |
| GGACAAAAAGATGCATATGT+TGG | - | chr7_3:63950586-63950605 | Msa1116400:intron | 35.0% | |
| TTGAAATACCCAATTGAGCA+TGG | - | chr7_3:63950643-63950662 | Msa1116400:intron | 35.0% | |
| TGAAATACCCAATTGAGCAT+GGG | - | chr7_3:63950644-63950663 | Msa1116400:intron | 35.0% | |
| TAACAATCCCATGCTCAATT+GGG | + | chr7_3:63950654-63950673 | None:intergenic | 35.0% | |
| AGCATGGGATTGTTAGTAAT+TGG | - | chr7_3:63950659-63950678 | Msa1116400:intron | 35.0% | |
| GCATGGGATTGTTAGTAATT+GGG | - | chr7_3:63950660-63950679 | Msa1116400:intron | 35.0% | |
| TGAATAGCAACATACATAGC+AGG | + | chr7_3:63950835-63950854 | None:intergenic | 35.0% | |
| CAAGATTGAAGGATAAACAC+CGG | - | chr7_3:63951019-63951038 | Msa1116400:CDS | 35.0% | |
| CCAAAACGAAACATATTTGC+AGG | + | chr7_3:63951077-63951096 | None:intergenic | 35.0% | |
| ! | CCTGCAAATATGTTTCGTTT+TGG | - | chr7_3:63951074-63951093 | Msa1116400:CDS | 35.0% |
| GGGACCAAAAACTACAAAAT+AGG | - | chr7_3:63951205-63951224 | Msa1116400:CDS | 35.0% | |
| TTTGCATACGTGACATATGA+TGG | + | chr7_3:63951236-63951255 | None:intergenic | 35.0% | |
| AATCATCACAAAAGTAGGGT+CGG | - | chr7_3:63951254-63951273 | Msa1116400:CDS | 35.0% | |
| CAAAACGAGACATATTTGCA+GGG | - | chr7_3:63951334-63951353 | Msa1116400:intron | 35.0% | |
| TGTAATCACATATGTCTTGG+TGG | - | chr7_3:63951411-63951430 | Msa1116400:intron | 35.0% | |
| !!! | GTAGGTATTGTTTTGGATTC+TGG | - | chr7_3:63951580-63951599 | Msa1116400:intron | 35.0% |
| !!! | AGGTATTGTTTTGGATTCTG+GGG | - | chr7_3:63951582-63951601 | Msa1116400:intron | 35.0% |
| AGAAATTGTGAGGGATATGA+AGG | - | chr7_3:63951753-63951772 | Msa1116400:intron | 35.0% | |
| TATTGCTCTTGATTATGAGC+AGG | - | chr7_3:63951789-63951808 | Msa1116400:intron | 35.0% | |
| TCGAGTTAAATGTTGTCTCA+TGG | + | chr7_3:63951960-63951979 | None:intergenic | 35.0% | |
| TATGGTAACATTGTGTTGAG+TGG | - | chr7_3:63952015-63952034 | Msa1116400:CDS | 35.0% | |
| ACCTAGTAGCATGAAAATCA+AGG | - | chr7_3:63952098-63952117 | Msa1116400:CDS | 35.0% | |
| ! | ACCTTGATTTTCATGCTACT+AGG | + | chr7_3:63952102-63952121 | None:intergenic | 35.0% |
| TACAGGTTATGAAAAGTAGG+AGG | - | chr7_3:63952262-63952281 | Msa1116400:CDS | 35.0% | |
| !!! | TACTTTTTCTTGTGCAGATG+TGG | - | chr7_3:63952351-63952370 | Msa1116400:CDS | 35.0% |
| AAGGCAGAATATGATGAATC+TGG | - | chr7_3:63952380-63952399 | Msa1116400:intron | 35.0% | |
| AGGCAGAATATGATGAATCT+GGG | - | chr7_3:63952381-63952400 | Msa1116400:intron | 35.0% | |
| CATTTCCTGTGTACTATTGA+TGG | + | chr7_3:63952407-63952426 | None:intergenic | 35.0% | |
| AAATACCATCTAGTTGGTTG+AGG | - | chr7_3:63952496-63952515 | Msa1116400:intron | 35.0% | |
| CATCTCTACAACAAAATGAG+GGG | + | chr7_3:63952639-63952658 | None:intergenic | 35.0% | |
| CACATCTCTACAACAAAATG+AGG | + | chr7_3:63952641-63952660 | None:intergenic | 35.0% | |
| !!! | CGCGCTCTGTTGTTTTAAAA+AGG | + | chr7_3:63950108-63950127 | None:intergenic | 40.0% |
| GAAACAGACACAGATGATGA+AGG | + | chr7_3:63950179-63950198 | None:intergenic | 40.0% | |
| !!! | AGCTTTTGATCAGGAGTGTT+GGG | + | chr7_3:63950316-63950335 | None:intergenic | 40.0% |
| !!! | TTGTTTTAGGCTGGTTTTGC+AGG | - | chr7_3:63950490-63950509 | Msa1116400:CDS | 40.0% |
| GATGAAGCACAATCAAAGAG+AGG | - | chr7_3:63950610-63950629 | Msa1116400:intron | 40.0% | |
| CTAACAATCCCATGCTCAAT+TGG | + | chr7_3:63950655-63950674 | None:intergenic | 40.0% | |
| ! | TGAAGCACCTCTTAATCCTA+AGG | - | chr7_3:63950762-63950781 | Msa1116400:CDS | 40.0% |
| !! | CGATTAGCCTTAGGATTAAG+AGG | + | chr7_3:63950772-63950791 | None:intergenic | 40.0% |
| CGGTGTTTATCCTTCAATCT+TGG | + | chr7_3:63951021-63951040 | None:intergenic | 40.0% | |
| ! | CCTGCAAATATGTCTCGTTT+TGG | + | chr7_3:63951336-63951355 | None:intergenic | 40.0% |
| CCAAAACGAGACATATTTGC+AGG | - | chr7_3:63951333-63951352 | Msa1116400:intron | 40.0% | |
| ! | AGTATGTAGCATCGAAACGT+TGG | + | chr7_3:63951458-63951477 | None:intergenic | 40.0% |
| !!! | ATTGTTTTGGATTCTGGGGA+CGG | - | chr7_3:63951586-63951605 | Msa1116400:intron | 40.0% |
| AGTGCATATCCCTCGTAAAT+AGG | + | chr7_3:63951628-63951647 | None:intergenic | 40.0% | |
| !! | ATGAAGATTTTAACCGAGCG+TGG | - | chr7_3:63951703-63951722 | Msa1116400:intron | 40.0% |
| GAGGGATATGAAGGAGAAAT+TGG | - | chr7_3:63951762-63951781 | Msa1116400:intron | 40.0% | |
| AATGTTGTCTCATGGATACC+AGG | + | chr7_3:63951952-63951971 | None:intergenic | 40.0% | |
| TGAAGTGTGATGTCGACATT+AGG | - | chr7_3:63951983-63952002 | Msa1116400:intron | 40.0% | |
| GACATTAGGAAGGATCTCTA+TGG | - | chr7_3:63951997-63952016 | Msa1116400:intron | 40.0% | |
| TCATCCTATCAGCAATACCA+GGG | + | chr7_3:63952056-63952075 | None:intergenic | 40.0% | |
| TATTGCTGATAGGATGAGCA+AGG | - | chr7_3:63952059-63952078 | Msa1116400:CDS | 40.0% | |
| AAGTTCCTCAACCAACTAGA+TGG | + | chr7_3:63952504-63952523 | None:intergenic | 40.0% | |
| ! | AAGTGTTCTGGTTGTCATAG+TGG | - | chr7_3:63952706-63952725 | Msa1116400:five_prime_UTR | 40.0% |
| ! | CAAGTTGGCTTATGAAACGT+AGG | + | chr7_3:63952814-63952833 | None:intergenic | 40.0% |
| TTAGATTCGATCCTGACCGT+CGG | + | chr7_3:63950039-63950058 | None:intergenic | 45.0% | |
| GTTCCGTTGTCGCAAACTAA+GGG | + | chr7_3:63950244-63950263 | None:intergenic | 45.0% | |
| !! | TTAGTTTGCGACAACGGAAC+CGG | - | chr7_3:63950244-63950263 | Msa1116400:three_prime_UTR | 45.0% |
| GATTGATACCTTGACCATGC+CGG | + | chr7_3:63950266-63950285 | None:intergenic | 45.0% | |
| !!! | GCTTTTGATCAGGAGTGTTG+GGG | + | chr7_3:63950315-63950334 | None:intergenic | 45.0% |
| !! | GAGCTTTTGATCAGGAGTGT+TGG | + | chr7_3:63950317-63950336 | None:intergenic | 45.0% |
| AATAGAGATACAGACACCGC+CGG | + | chr7_3:63950447-63950466 | None:intergenic | 45.0% | |
| GCAGTATTCCCTAGCATAGT+AGG | - | chr7_3:63950529-63950548 | Msa1116400:intron | 45.0% | |
| ! | ACAGGGGTAATGGTTGGAAT+GGG | - | chr7_3:63950565-63950584 | Msa1116400:intron | 45.0% |
| GGGATGATATGGAGAAGATC+TGG | - | chr7_3:63950680-63950699 | Msa1116400:intron | 45.0% | |
| ! | AGAAGAACAGGGTGTTCTTC+AGG | + | chr7_3:63950739-63950758 | None:intergenic | 45.0% |
| GTGCTTCAGTGAGAAGAACA+GGG | + | chr7_3:63950750-63950769 | None:intergenic | 45.0% | |
| GTGCTTTCACTTTATGCGAG+TGG | - | chr7_3:63950859-63950878 | Msa1116400:CDS | 45.0% | |
| ACACTCGACACCAAGATTGA+AGG | - | chr7_3:63951008-63951027 | Msa1116400:CDS | 45.0% | |
| ! | GCCATGTGATGATGCAAACT+AGG | - | chr7_3:63951515-63951534 | Msa1116400:intron | 45.0% |
| ! | GCCTAGTTTGCATCATCACA+TGG | + | chr7_3:63951519-63951538 | None:intergenic | 45.0% |
| TCACACGGTTCCTATTTACG+AGG | - | chr7_3:63951615-63951634 | Msa1116400:intron | 45.0% | |
| CACACGGTTCCTATTTACGA+GGG | - | chr7_3:63951616-63951635 | Msa1116400:intron | 45.0% | |
| TCCACATGCAATCCTTCGTT+TGG | - | chr7_3:63951648-63951667 | Msa1116400:intron | 45.0% | |
| TCCAAACGAAGGATTGCATG+TGG | + | chr7_3:63951652-63951671 | None:intergenic | 45.0% | |
| ATCCTTCGTTTGGATCTTGC+AGG | - | chr7_3:63951658-63951677 | Msa1116400:intron | 45.0% | |
| AATTTCTCGCTCTGCTGAAG+TGG | + | chr7_3:63951740-63951759 | None:intergenic | 45.0% | |
| AGCAGAGCGAGAAATTGTGA+GGG | - | chr7_3:63951744-63951763 | Msa1116400:intron | 45.0% | |
| AAGACCTATGAGCTACCTGA+TGG | - | chr7_3:63951847-63951866 | Msa1116400:intron | 45.0% | |
| ATCGTGATTACCTGTCCATC+AGG | + | chr7_3:63951865-63951884 | None:intergenic | 45.0% | |
| GATGGACAGGTAATCACGAT+CGG | - | chr7_3:63951865-63951884 | Msa1116400:intron | 45.0% | |
| GGAACAAAACTTCTGGGCAT+CGG | + | chr7_3:63951903-63951922 | None:intergenic | 45.0% | |
| ACGGCTGGAACAAAACTTCT+GGG | + | chr7_3:63951909-63951928 | None:intergenic | 45.0% | |
| GTGTGATGTCGACATTAGGA+AGG | - | chr7_3:63951987-63952006 | Msa1116400:intron | 45.0% | |
| GGTAACATTGTGTTGAGTGG+TGG | - | chr7_3:63952018-63952037 | Msa1116400:CDS | 45.0% | |
| TGTTCCCTGGTATTGCTGAT+AGG | - | chr7_3:63952049-63952068 | Msa1116400:CDS | 45.0% | |
| CTCATCCTATCAGCAATACC+AGG | + | chr7_3:63952057-63952076 | None:intergenic | 45.0% | |
| GAGCAAGGAGATTACAGCAT+TGG | - | chr7_3:63952074-63952093 | Msa1116400:CDS | 45.0% | |
| ! | AGGAAGTACAGTGTCTGGAT+TGG | - | chr7_3:63952138-63952157 | Msa1116400:CDS | 45.0% |
| ! | AAGTACAGTGTCTGGATTGG+AGG | - | chr7_3:63952141-63952160 | Msa1116400:CDS | 45.0% |
| !! | CTGGATTGGAGGTTCCATTT+TGG | - | chr7_3:63952152-63952171 | Msa1116400:CDS | 45.0% |
| ! | AGTGCTGAGAGATGCCAAAA+TGG | + | chr7_3:63952169-63952188 | None:intergenic | 45.0% |
| ATCTCTCAGCACTTTCCAAC+AGG | - | chr7_3:63952176-63952195 | Msa1116400:CDS | 45.0% | |
| ! | TGTGCAGATGTGGATTGCAA+AGG | - | chr7_3:63952361-63952380 | Msa1116400:CDS | 45.0% |
| !!! | AAAAAAAAAAAATTAGATTT+TGG | - | chr7_3:63951111-63951130 | Msa1116400:CDS | 5.0% |
| !!! | TAAAAAAAAAAAATAGTTTT+TGG | + | chr7_3:63951301-63951320 | None:intergenic | 5.0% |
| !! | CAGCCCTTAGTTTGCGACAA+CGG | - | chr7_3:63950238-63950257 | Msa1116400:three_prime_UTR | 50.0% |
| GGTTCCGTTGTCGCAAACTA+AGG | + | chr7_3:63950245-63950264 | None:intergenic | 50.0% | |
| !! | GATCAGGAGTGTTGGGGATA+GGG | + | chr7_3:63950309-63950328 | None:intergenic | 50.0% |
| !! | TGATCAGGAGTGTTGGGGAT+AGG | + | chr7_3:63950310-63950329 | None:intergenic | 50.0% |
| ! | CCAGACACGAGCTTTTGATC+AGG | + | chr7_3:63950325-63950344 | None:intergenic | 50.0% |
| CCTGATCAAAAGCTCGTGTC+TGG | - | chr7_3:63950322-63950341 | Msa1116400:three_prime_UTR | 50.0% | |
| TGTCCGACACAGATCAGTGT+CGG | - | chr7_3:63950345-63950364 | Msa1116400:three_prime_UTR | 50.0% | |
| TGTCCGACACTGATCTGTGT+CGG | + | chr7_3:63950351-63950370 | None:intergenic | 50.0% | |
| GGATGTGTCAGTGTCGTATC+CGG | - | chr7_3:63950425-63950444 | Msa1116400:three_prime_UTR | 50.0% | |
| TTGCAGGAGATGATGCACCA+AGG | - | chr7_3:63950506-63950525 | Msa1116400:intron | 50.0% | |
| TGCAGGAGATGATGCACCAA+GGG | - | chr7_3:63950507-63950526 | Msa1116400:intron | 50.0% | |
| ATGCTAGGGAATACTGCCCT+TGG | + | chr7_3:63950526-63950545 | None:intergenic | 50.0% | |
| GTGGACGTCCTACTATGCTA+GGG | + | chr7_3:63950540-63950559 | None:intergenic | 50.0% | |
| ! | CACAGGGGTAATGGTTGGAA+TGG | - | chr7_3:63950564-63950583 | Msa1116400:intron | 50.0% |
| GGTGCTTCAGTGAGAAGAAC+AGG | + | chr7_3:63950751-63950770 | None:intergenic | 50.0% | |
| TATGCGAGTGGTCGTACAAC+TGG | - | chr7_3:63950871-63950890 | Msa1116400:CDS | 50.0% | |
| !! | CAATCTTGGTGTCGAGTGTC+TGG | + | chr7_3:63951007-63951026 | None:intergenic | 50.0% |
| GACCTGCAAGATCCAAACGA+AGG | + | chr7_3:63951663-63951682 | None:intergenic | 50.0% | |
| CAGCAGAGCGAGAAATTGTG+AGG | - | chr7_3:63951743-63951762 | Msa1116400:intron | 50.0% | |
| CTGTCCATCAGGTAGCTCAT+AGG | + | chr7_3:63951854-63951873 | None:intergenic | 50.0% | |
| ! | CTATGAGCTACCTGATGGAC+AGG | - | chr7_3:63951852-63951871 | Msa1116400:intron | 50.0% |
| GACGGCTGGAACAAAACTTC+TGG | + | chr7_3:63951910-63951929 | None:intergenic | 50.0% | |
| TTGTTCCAGCCGTCCATGAT+CGG | - | chr7_3:63951916-63951935 | Msa1116400:intron | 50.0% | |
| GATTCCATCCCGATCATGGA+CGG | + | chr7_3:63951928-63951947 | None:intergenic | 50.0% | |
| AGGAGATTCCATCCCGATCA+TGG | + | chr7_3:63951932-63951951 | None:intergenic | 50.0% | |
| ATGATCGGGATGGAATCTCC+TGG | - | chr7_3:63951931-63951950 | Msa1116400:intron | 50.0% | |
| GGTGGTTCAACAATGTTCCC+TGG | - | chr7_3:63952036-63952055 | Msa1116400:CDS | 50.0% | |
| ACACTGTACTTCCTCTCTGG+TGG | + | chr7_3:63952132-63952151 | None:intergenic | 50.0% | |
| CAGACACTGTACTTCCTCTC+TGG | + | chr7_3:63952135-63952154 | None:intergenic | 50.0% | |
| ! | CAGAGAGGAAGTACAGTGTC+TGG | - | chr7_3:63952133-63952152 | Msa1116400:CDS | 50.0% |
| CTGGGCCATCAATAGTACAC+AGG | - | chr7_3:63952399-63952418 | Msa1116400:intron | 50.0% | |
| AAATCACGGTGCATGAGAGC+TGG | - | chr7_3:63952438-63952457 | Msa1116400:intron | 50.0% | |
| GGTGCATGAGAGCTGGATTA+AGG | - | chr7_3:63952445-63952464 | Msa1116400:intron | 50.0% | |
| TGTGTCAGTGTCGTATCCGG+CGG | - | chr7_3:63950428-63950447 | Msa1116400:three_prime_UTR | 55.0% | |
| CGTGGACGTCCTACTATGCT+AGG | + | chr7_3:63950541-63950560 | None:intergenic | 55.0% | |
| TAGGACGTCCACGTCACACA+GGG | - | chr7_3:63950548-63950567 | Msa1116400:intron | 55.0% | |
| TCCACGTCACACAGGGGTAA+TGG | - | chr7_3:63950555-63950574 | Msa1116400:intron | 55.0% | |
| ACCATTACCCCTGTGTGACG+TGG | + | chr7_3:63950559-63950578 | None:intergenic | 55.0% | |
| ! | CGTCACACAGGGGTAATGGT+TGG | - | chr7_3:63950559-63950578 | Msa1116400:intron | 55.0% |
| ! | TGGGGACGGTGTTAGTCACA+CGG | - | chr7_3:63951600-63951619 | Msa1116400:intron | 55.0% |
| ! | GGTGAAAGTGTAGCCACGCT+CGG | + | chr7_3:63951719-63951738 | None:intergenic | 55.0% |
| TGTTCCAGCCGTCCATGATC+GGG | - | chr7_3:63951917-63951936 | Msa1116400:intron | 55.0% | |
| AGGTTGTAGCACCACCAGAG+AGG | - | chr7_3:63952118-63952137 | Msa1116400:CDS | 55.0% | |
| TTGCGACAACGGAACCGGCA+TGG | - | chr7_3:63950249-63950268 | Msa1116400:three_prime_UTR | 60.0% | |
| CAACGGAACCGGCATGGTCA+AGG | - | chr7_3:63950255-63950274 | Msa1116400:three_prime_UTR | 60.0% | |
| GTAGGACGTCCACGTCACAC+AGG | - | chr7_3:63950547-63950566 | Msa1116400:intron | 60.0% | |
| AGGACGTCCACGTCACACAG+GGG | - | chr7_3:63950549-63950568 | Msa1116400:intron | 60.0% | |
| CCATCCCGATCATGGACGGC+TGG | + | chr7_3:63951924-63951943 | None:intergenic | 65.0% | |
| CCAGCCGTCCATGATCGGGA+TGG | - | chr7_3:63951921-63951940 | Msa1116400:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 63950036 | 63952854 | 63950036 | ID=Msa1116400;Name=Msa1116400 |
| chr7_3 | mRNA | 63950036 | 63952854 | 63950036 | ID=Msa1116400-mRNA-1;Parent=Msa1116400;Name=Msa1116400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=181|1|1|1|1|1|4|421|377 |
| chr7_3 | exon | 63950036 | 63950522 | 63950036 | ID=Msa1116400-mRNA-1:exon:15120;Parent=Msa1116400-mRNA-1 |
| chr7_3 | exon | 63950693 | 63951306 | 63950693 | ID=Msa1116400-mRNA-1:exon:15119;Parent=Msa1116400-mRNA-1 |
| chr7_3 | exon | 63951998 | 63952391 | 63951998 | ID=Msa1116400-mRNA-1:exon:15118;Parent=Msa1116400-mRNA-1 |
| chr7_3 | exon | 63952614 | 63952854 | 63952614 | ID=Msa1116400-mRNA-1:exon:15117;Parent=Msa1116400-mRNA-1 |
| chr7_3 | five_prime_UTR | 63952674 | 63952854 | 63952674 | ID=Msa1116400-mRNA-1:five_prime_utr;Parent=Msa1116400-mRNA-1 |
| chr7_3 | CDS | 63952614 | 63952673 | 63952614 | ID=Msa1116400-mRNA-1:cds;Parent=Msa1116400-mRNA-1 |
| chr7_3 | CDS | 63951998 | 63952391 | 63951998 | ID=Msa1116400-mRNA-1:cds;Parent=Msa1116400-mRNA-1 |
| chr7_3 | CDS | 63950693 | 63951306 | 63950693 | ID=Msa1116400-mRNA-1:cds;Parent=Msa1116400-mRNA-1 |
| chr7_3 | CDS | 63950457 | 63950522 | 63950457 | ID=Msa1116400-mRNA-1:cds;Parent=Msa1116400-mRNA-1 |
| chr7_3 | three_prime_UTR | 63950036 | 63950456 | 63950036 | ID=Msa1116400-mRNA-1:three_prime_utr;Parent=Msa1116400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
