Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037680 | XP_013467486.1 | 67.235 | 293 | 9 | 5 | 8 | 263 | 63 | 305 | 1.27e-118 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037680 | sp|Q2QY10|CBP_ORYSJ | 62.921 | 267 | 34 | 6 | 12 | 263 | 76 | 292 | 4.23e-104 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037680 | A0A072VJB4 | 67.235 | 293 | 9 | 5 | 8 | 263 | 63 | 305 | 6.07e-119 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0557850 | Msa1037680 | 0.803739 | 3.019535e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037680 | MtrunA17_Chr1g0172721 | 67.235 | 293 | 9 | 5 | 8 | 263 | 63 | 305 | 1.17e-122 | 352 |
| Msa1037680 | MtrunA17_Chr2g0333891 | 62.745 | 153 | 8 | 3 | 99 | 251 | 6 | 109 | 3.50e-53 | 169 |
| Msa1037680 | MtrunA17_Chr2g0321531 | 43.172 | 227 | 78 | 4 | 38 | 263 | 87 | 263 | 1.65e-52 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037680 | AT3G10300.3 | 61.905 | 252 | 41 | 5 | 12 | 263 | 139 | 335 | 3.67e-100 | 296 |
| Msa1037680 | AT5G04170.1 | 59.206 | 277 | 47 | 7 | 3 | 263 | 128 | 354 | 7.28e-96 | 285 |
| Msa1037680 | AT3G10300.4 | 77.439 | 164 | 31 | 2 | 12 | 175 | 139 | 296 | 5.81e-89 | 267 |
| Msa1037680 | AT3G10300.2 | 77.439 | 164 | 31 | 2 | 12 | 175 | 139 | 296 | 9.29e-89 | 266 |
| Msa1037680 | AT3G10300.6 | 64.706 | 204 | 65 | 3 | 12 | 214 | 139 | 336 | 3.46e-87 | 264 |
| Msa1037680 | AT3G10300.5 | 76.970 | 165 | 31 | 3 | 12 | 175 | 139 | 297 | 6.67e-87 | 262 |
| Msa1037680 | AT2G27480.1 | 33.992 | 253 | 108 | 4 | 11 | 261 | 29 | 224 | 2.93e-40 | 139 |
| Msa1037680 | AT3G10300.1 | 75.281 | 89 | 16 | 2 | 12 | 100 | 139 | 221 | 2.13e-37 | 132 |
| Msa1037680 | AT2G27480.2 | 38.554 | 166 | 92 | 3 | 11 | 174 | 29 | 186 | 1.94e-31 | 115 |
Find 82 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCATCGTGGCTTGCTTTC+AGG | 0.152036 | 7_1:+74374895 | Msa1037680:CDS |
| AATTGTTTATTTAATTAAAA+AGG | 0.184612 | 7_1:+74376793 | Msa1037680:CDS |
| CCATAACTGGGAGGCTGATT+TGG | 0.211083 | 7_1:-74374773 | None:intergenic |
| TGGTGCGCCGTAACCATAAC+TGG | 0.255920 | 7_1:-74374786 | None:intergenic |
| TATGACAATTTCATTGAGTA+TGG | 0.258705 | 7_1:+74376737 | Msa1037680:CDS |
| GTCAGTTGACCATGTTAATT+TGG | 0.285725 | 7_1:+74377749 | Msa1037680:three_prime_UTR |
| AAATTCAAGGAGAAGGATAC+TGG | 0.342259 | 7_1:+74377638 | Msa1037680:CDS |
| TTGACCATGTTAATTTGGTT+TGG | 0.348667 | 7_1:+74377754 | Msa1037680:three_prime_UTR |
| ATGCCGGTGGTGGGTAGGAT+TGG | 0.354199 | 7_1:-74374817 | None:intergenic |
| CATAACTGGGAGGCTGATTT+GGG | 0.365868 | 7_1:-74374772 | None:intergenic |
| TTGCTTTCAGGTGGCTGATC+AGG | 0.376508 | 7_1:+74374907 | Msa1037680:CDS |
| TAAATACAAACCTCAGCAAT+AGG | 0.389414 | 7_1:+74374668 | None:intergenic |
| TGCCGGTGGTGGGTAGGATT+GGG | 0.390143 | 7_1:-74374816 | None:intergenic |
| CCAAATCAGCCTCCCAGTTA+TGG | 0.392011 | 7_1:+74374773 | Msa1037680:CDS |
| GTCTCCAAGTTTGACAAAAC+TGG | 0.393079 | 7_1:+74376692 | Msa1037680:CDS |
| TGCTGTTTCTCCAATGGTGT+TGG | 0.397702 | 7_1:+74376661 | Msa1037680:CDS |
| TGTGGTTGAGTGAATTGCTT+TGG | 0.410943 | 7_1:+74377788 | Msa1037680:three_prime_UTR |
| GGGAGGCTGATTTGGGTAAC+CGG | 0.415296 | 7_1:-74374765 | None:intergenic |
| GAGGTTGTATTGAGAGAGAG+AGG | 0.430611 | 7_1:-74374724 | None:intergenic |
| TGAAAGCAAGCCACGATGCT+AGG | 0.437354 | 7_1:-74374893 | None:intergenic |
| CCTACCATTCTTGATAGCTT+AGG | 0.445299 | 7_1:+74377709 | Msa1037680:CDS |
| GGGTAGGATTGGGACGGCGG+TGG | 0.446216 | 7_1:-74374806 | None:intergenic |
| TTGAGAGATTTGACAAGGAC+AGG | 0.450728 | 7_1:+74376585 | Msa1037680:CDS |
| AGTCAGCATAAACGCCTCAT+AGG | 0.454448 | 7_1:-74377684 | None:intergenic |
| GGGTTATGCTGTTTCTCCAA+TGG | 0.458823 | 7_1:+74376655 | Msa1037680:CDS |
| GGTGGGTAGGATTGGGACGG+CGG | 0.470502 | 7_1:-74374809 | None:intergenic |
| ATGGCAATAGCGACGCAAAC+GGG | 0.478558 | 7_1:-74374847 | None:intergenic |
| AACAGAGAAGTGAATTCCTT+GGG | 0.482058 | 7_1:-74376133 | None:intergenic |
| TGGCTGATCAGGACGGAAGC+GGG | 0.491632 | 7_1:+74374918 | Msa1037680:CDS |
| CAGCCTCCCAGTTATGGTTA+CGG | 0.494775 | 7_1:+74374779 | Msa1037680:CDS |
| AAACAGAGAAGTGAATTCCT+TGG | 0.497480 | 7_1:-74376134 | None:intergenic |
| ATGTTAATTTGGTTTGGAGA+TGG | 0.499108 | 7_1:+74377760 | Msa1037680:three_prime_UTR |
| ATAGGAAAATGTTGCAGAGC+CGG | 0.504522 | 7_1:-74377666 | None:intergenic |
| GATGGCAATAGCGACGCAAA+CGG | 0.509080 | 7_1:-74374848 | None:intergenic |
| TTACAAGAGTATCACAGCTT+CGG | 0.514956 | 7_1:+74377289 | Msa1037680:CDS |
| GGGCTAGCATATGCCGGTGG+TGG | 0.518348 | 7_1:-74374827 | None:intergenic |
| GAGAAGGATACTGGGTATAC+CGG | 0.518715 | 7_1:+74377647 | Msa1037680:CDS |
| AAGCGGGTTGATCGACGATA+AGG | 0.518973 | 7_1:+74374934 | Msa1037680:CDS |
| ACGATGCTAGGGTCCGTGCC+AGG | 0.522304 | 7_1:-74374881 | None:intergenic |
| CTATCCTAAGCTATCAAGAA+TGG | 0.522638 | 7_1:-74377713 | None:intergenic |
| GTGGCTGATCAGGACGGAAG+CGG | 0.528233 | 7_1:+74374917 | Msa1037680:CDS |
| ACGAGCAAGTCCAACACCAT+TGG | 0.532348 | 7_1:-74376671 | None:intergenic |
| TTGATAGCTTAGGATAGTAA+TGG | 0.539920 | 7_1:+74377719 | Msa1037680:exon |
| AGCATATGCCGGTGGTGGGT+AGG | 0.540302 | 7_1:-74374822 | None:intergenic |
| ATCGACATTTCCTCCTGGCA+CGG | 0.541465 | 7_1:+74374868 | Msa1037680:CDS |
| AGTAATGAGTAAAGACAAAG+AGG | 0.543304 | 7_1:-74374693 | None:intergenic |
| GAAAGCAAGCCACGATGCTA+GGG | 0.552273 | 7_1:-74374892 | None:intergenic |
| GGGACTAACGGACAAATTCA+AGG | 0.555013 | 7_1:+74377625 | Msa1037680:intron |
| TTGCCATCGACATTTCCTCC+TGG | 0.563915 | 7_1:+74374863 | Msa1037680:CDS |
| CCTAAGCTATCAAGAATGGT+AGG | 0.571506 | 7_1:-74377709 | None:intergenic |
| TGCATTCAATGAGAGACACT+TGG | 0.572149 | 7_1:+74377920 | Msa1037680:three_prime_UTR |
| GTCCCAATCCTACCCACCAC+CGG | 0.576207 | 7_1:+74374814 | Msa1037680:CDS |
| AACGGACAAATTCAAGGAGA+AGG | 0.577003 | 7_1:+74377631 | Msa1037680:CDS |
| GTGTGTATTGCAGGGACTAA+CGG | 0.577070 | 7_1:+74377613 | Msa1037680:intron |
| TTTACAGTCTTCAGAGCTGG+AGG | 0.582721 | 7_1:+74376155 | Msa1037680:CDS |
| GGCTAGCATATGCCGGTGGT+GGG | 0.588796 | 7_1:-74374826 | None:intergenic |
| AGGTTGTATTGAGAGAGAGA+GGG | 0.592025 | 7_1:-74374723 | None:intergenic |
| GGTGTTCTTTACAACACCAA+TGG | 0.592268 | 7_1:+74377890 | Msa1037680:three_prime_UTR |
| CAAAACTGGTGGCAAAAGCA+AGG | 0.595081 | 7_1:+74376706 | Msa1037680:CDS |
| CATCGTGGCTTGCTTTCAGG+TGG | 0.599076 | 7_1:+74374898 | Msa1037680:CDS |
| GCAAACGGGCTAGCATATGC+CGG | 0.604589 | 7_1:-74374833 | None:intergenic |
| CAGGTGTTGTCTTACTGTGA+AGG | 0.610048 | 7_1:+74377164 | Msa1037680:intron |
| ACTTCGTAATGCAGGACCCA+AGG | 0.610912 | 7_1:+74376117 | Msa1037680:intron |
| CGACGATAAGGAGTTGCAGA+AGG | 0.616617 | 7_1:+74374946 | Msa1037680:CDS |
| TTTCAGGTGGCTGATCAGGA+CGG | 0.619149 | 7_1:+74374911 | Msa1037680:CDS |
| CAAAGAGGAGCCTATTGCTG+AGG | 0.622185 | 7_1:-74374678 | None:intergenic |
| TTACAGTCTTCAGAGCTGGA+GGG | 0.623884 | 7_1:+74376156 | Msa1037680:CDS |
| AATTCAAGGAGAAGGATACT+GGG | 0.625055 | 7_1:+74377639 | Msa1037680:CDS |
| ATCTCCAAACCAAATTAACA+TGG | 0.630912 | 7_1:-74377758 | None:intergenic |
| AGATTTGACAAGGACAGGAG+TGG | 0.632857 | 7_1:+74376590 | Msa1037680:CDS |
| GGTGGTGGGTAGGATTGGGA+CGG | 0.634800 | 7_1:-74374812 | None:intergenic |
| GGTTTGGAGATGGATGTGTG+TGG | 0.640103 | 7_1:+74377770 | Msa1037680:three_prime_UTR |
| GTGCCAGGAGGAAATGTCGA+TGG | 0.643863 | 7_1:-74374866 | None:intergenic |
| AATATTTGAGAGATTTGACA+AGG | 0.647157 | 7_1:+74376580 | Msa1037680:CDS |
| GGTGCGCCGTAACCATAACT+GGG | 0.652566 | 7_1:-74374785 | None:intergenic |
| TCCAAGTTTGACAAAACTGG+TGG | 0.653417 | 7_1:+74376695 | Msa1037680:CDS |
| ATTCAATGAGAGACACTTGG+TGG | 0.674086 | 7_1:+74377923 | Msa1037680:three_prime_UTR |
| ATGCTAGGGTCCGTGCCAGG+AGG | 0.680982 | 7_1:-74374878 | None:intergenic |
| AACGGGCTAGCATATGCCGG+TGG | 0.684322 | 7_1:-74374830 | None:intergenic |
| TGGTGAAGTGATACATGAGA+AGG | 0.701394 | 7_1:-74375015 | None:intergenic |
| TGGCACGGACCCTAGCATCG+TGG | 0.712266 | 7_1:+74374883 | Msa1037680:CDS |
| GCGCCGTAACCATAACTGGG+AGG | 0.727287 | 7_1:-74374782 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAAAAAAGAAATATTT+GGG | - | chr7_1:74375392-74375411 | None:intergenic | 10.0% |
| !! | TAATCTAAAAAAGAAATATT+TGG | - | chr7_1:74375393-74375412 | None:intergenic | 10.0% |
| !! | AGATTAATTGAATTATATAA+AGG | + | chr7_1:74375407-74375426 | Msa1037680:intron | 10.0% |
| !!! | ATCAAATAAAGTATTTATAA+TGG | + | chr7_1:74375633-74375652 | Msa1037680:intron | 10.0% |
| !!! | TCAAATAAAGTATTTATAAT+GGG | + | chr7_1:74375634-74375653 | Msa1037680:intron | 10.0% |
| !! | AATTCTCATATGTTAAAATT+AGG | + | chr7_1:74375114-74375133 | Msa1037680:intron | 15.0% |
| !! | ATTCTCATATGTTAAAATTA+GGG | + | chr7_1:74375115-74375134 | Msa1037680:intron | 15.0% |
| !! | CTTTAATCACAATAATTAAA+TGG | + | chr7_1:74375280-74375299 | Msa1037680:intron | 15.0% |
| !! | GAAAATTAAAGAAAAAAAAG+AGG | - | chr7_1:74376190-74376209 | None:intergenic | 15.0% |
| !!! | ATTTTAGTAAAAACCAATAT+TGG | + | chr7_1:74376280-74376299 | Msa1037680:intron | 15.0% |
| !!! | ATTTGTATTTTCAATGAAAA+TGG | + | chr7_1:74376913-74376932 | Msa1037680:intron | 15.0% |
| !! | TTTATTAAAAAATCAGCAAA+TGG | + | chr7_1:74376948-74376967 | Msa1037680:intron | 15.0% |
| !!! | TTTTAGTTATAATTGAACAA+TGG | + | chr7_1:74377841-74377860 | Msa1037680:three_prime_UTR | 15.0% |
| !!! | TATGAGAATTTTGAATGAAA+TGG | - | chr7_1:74375104-74375123 | None:intergenic | 20.0% |
| !! | AGTATTTATTACTTAAAACG+AGG | - | chr7_1:74375192-74375211 | None:intergenic | 20.0% |
| !! | TTATATAAAGGCTTAAAACT+AGG | + | chr7_1:74375419-74375438 | Msa1037680:intron | 20.0% |
| !! | TATATAAAGGCTTAAAACTA+GGG | + | chr7_1:74375420-74375439 | Msa1037680:intron | 20.0% |
| !!! | ATCGGTTGATATTATATATA+AGG | - | chr7_1:74375921-74375940 | None:intergenic | 20.0% |
| !! | TTCAGAATTAAGAATAACTA+GGG | - | chr7_1:74376213-74376232 | None:intergenic | 20.0% |
| !! | ATGATTCAAAATACCAATAT+TGG | - | chr7_1:74376296-74376315 | None:intergenic | 20.0% |
| !!! | ATTAAAAAGGATTTTTGTCT+AGG | + | chr7_1:74376806-74376825 | Msa1037680:CDS | 20.0% |
| !! | ATTGAAAATACAAATGTTGA+AGG | - | chr7_1:74376908-74376927 | None:intergenic | 20.0% |
| !!! | CAATTGTCATGTTATTTTTT+AGG | + | chr7_1:74376975-74376994 | Msa1037680:intron | 20.0% |
| !! | ATACTGTATTGAATAAGAAT+AGG | - | chr7_1:74377244-74377263 | None:intergenic | 20.0% |
| !! | ATAAATTTCACTCTAACTTA+GGG | + | chr7_1:74377524-74377543 | Msa1037680:intron | 20.0% |
| !! | TCAATTATAACTAAAAAGCA+GGG | - | chr7_1:74377837-74377856 | None:intergenic | 20.0% |
| !! | TTCAATTATAACTAAAAAGC+AGG | - | chr7_1:74377838-74377857 | None:intergenic | 20.0% |
| !! | CATATATTTATCTCCTGTTT+TGG | - | chr7_1:74375223-74375242 | None:intergenic | 25.0% |
| ! | CAAAACAGGAGATAAATATA+TGG | + | chr7_1:74375221-74375240 | Msa1037680:intron | 25.0% |
| ! | TCACAATAATTAAATGGTTG+AGG | + | chr7_1:74375286-74375305 | Msa1037680:intron | 25.0% |
| ! | ATAATAATGCCATCTATGAT+CGG | - | chr7_1:74375939-74375958 | None:intergenic | 25.0% |
| !! | AGAACATTAGCTTATGTTAA+GGG | - | chr7_1:74376041-74376060 | None:intergenic | 25.0% |
| !! | CTAATGTTCTGTTCAATTTT+TGG | + | chr7_1:74376051-74376070 | Msa1037680:intron | 25.0% |
| ! | TCAGAATTAAGAATAACTAG+GGG | - | chr7_1:74376212-74376231 | None:intergenic | 25.0% |
| ! | GTTCAGAATTAAGAATAACT+AGG | - | chr7_1:74376214-74376233 | None:intergenic | 25.0% |
| !! | TACATCAAATTTGTCATTTG+AGG | + | chr7_1:74376374-74376393 | Msa1037680:intron | 25.0% |
| !! | ACATCAAATTTGTCATTTGA+GGG | + | chr7_1:74376375-74376394 | Msa1037680:intron | 25.0% |
| !!! | AATTAGTCTAAGTGTGTTTT+TGG | - | chr7_1:74376501-74376520 | None:intergenic | 25.0% |
| ! | GACTAATTATTCTGTTCTTA+TGG | + | chr7_1:74376513-74376532 | Msa1037680:intron | 25.0% |
| ! | AATATTTGAGAGATTTGACA+AGG | + | chr7_1:74376580-74376599 | Msa1037680:CDS | 25.0% |
| ! | TATGACAATTTCATTGAGTA+TGG | + | chr7_1:74376737-74376756 | Msa1037680:CDS | 25.0% |
| !!! | TGTCTTCTTTTTCATAACTA+AGG | + | chr7_1:74376829-74376848 | Msa1037680:CDS | 25.0% |
| ! | TCAAATTTCTTCGTCTAAAA+TGG | + | chr7_1:74377019-74377038 | Msa1037680:intron | 25.0% |
| !! | CAAATTTCTTCGTCTAAAAT+GGG | + | chr7_1:74377020-74377039 | Msa1037680:intron | 25.0% |
| !! | TGTTCCTTTTTAAATGTTTG+CGG | + | chr7_1:74377372-74377391 | Msa1037680:intron | 25.0% |
| ! | TACATAAAACATAATCAACC+TGG | + | chr7_1:74377477-74377496 | Msa1037680:intron | 25.0% |
| ! | AAATTTATGGTTCACATACT+AGG | - | chr7_1:74377512-74377531 | None:intergenic | 25.0% |
| ! | CTAAGTTAGAGTGAAATTTA+TGG | - | chr7_1:74377525-74377544 | None:intergenic | 25.0% |
| ! | CATAAATTTCACTCTAACTT+AGG | + | chr7_1:74377523-74377542 | Msa1037680:intron | 25.0% |
| AGTAATGAGTAAAGACAAAG+AGG | - | chr7_1:74374696-74374715 | None:intergenic | 30.0% | |
| AATGGTGCAAATGAAGTAAA+AGG | - | chr7_1:74375086-74375105 | None:intergenic | 30.0% | |
| TTTGTGCTAACTTTGATCTT+AGG | + | chr7_1:74375138-74375157 | Msa1037680:intron | 30.0% | |
| ! | ATACTGTGTTTTTCCAAAAC+AGG | + | chr7_1:74375207-74375226 | Msa1037680:intron | 30.0% |
| ACAAGTGCTATCCATAAAAT+GGG | - | chr7_1:74375546-74375565 | None:intergenic | 30.0% | |
| GGCTATAGTATATACCATTA+TGG | - | chr7_1:74375572-74375591 | None:intergenic | 30.0% | |
| TTTGTAATTTCTCTGCATTC+AGG | - | chr7_1:74375707-74375726 | None:intergenic | 30.0% | |
| ! | ATATTAGTCACTTTAGTCTC+AGG | - | chr7_1:74375898-74375917 | None:intergenic | 30.0% |
| TAATATCAACCGATCATAGA+TGG | + | chr7_1:74375927-74375946 | Msa1037680:intron | 30.0% | |
| ! | GAACATTAGCTTATGTTAAG+GGG | - | chr7_1:74376040-74376059 | None:intergenic | 30.0% |
| ! | CAGAACATTAGCTTATGTTA+AGG | - | chr7_1:74376042-74376061 | None:intergenic | 30.0% |
| GATAATTCAAACAGTGAGAA+TGG | - | chr7_1:74376096-74376115 | None:intergenic | 30.0% | |
| ! | GGTTTTTACTAAAATCACGT+AGG | - | chr7_1:74376275-74376294 | None:intergenic | 30.0% |
| ! | TATGATGCTAATTTTGCATG+TGG | + | chr7_1:74376329-74376348 | Msa1037680:intron | 30.0% |
| ! | CATCAAATTTGTCATTTGAG+GGG | + | chr7_1:74376376-74376395 | Msa1037680:intron | 30.0% |
| TTATTCTGTTCTTATGGTCA+TGG | + | chr7_1:74376519-74376538 | Msa1037680:intron | 30.0% | |
| TATTCTGTTCTTATGGTCAT+GGG | + | chr7_1:74376520-74376539 | Msa1037680:intron | 30.0% | |
| ! | GCTACAACTCTTTCTTTTAT+TGG | + | chr7_1:74376764-74376783 | Msa1037680:CDS | 30.0% |
| ! | CGAAGAAATTTGACTTCAAA+TGG | - | chr7_1:74377012-74377031 | None:intergenic | 30.0% |
| CATACTAGGAAAATAAAACC+AGG | - | chr7_1:74377498-74377517 | None:intergenic | 30.0% | |
| AATACACACAATCAAAAGTG+AGG | - | chr7_1:74377602-74377621 | None:intergenic | 30.0% | |
| !! | TTTTGATTGTGTGTATTGCA+GGG | + | chr7_1:74377605-74377624 | Msa1037680:intron | 30.0% |
| ! | TTGATAGCTTAGGATAGTAA+TGG | + | chr7_1:74377719-74377738 | Msa1037680:exon | 30.0% |
| ! | TTGACCATGTTAATTTGGTT+TGG | + | chr7_1:74377754-74377773 | Msa1037680:three_prime_UTR | 30.0% |
| ATCTCCAAACCAAATTAACA+TGG | - | chr7_1:74377761-74377780 | None:intergenic | 30.0% | |
| !! | ATGTTAATTTGGTTTGGAGA+TGG | + | chr7_1:74377760-74377779 | Msa1037680:three_prime_UTR | 30.0% |
| !! | GTCATTTTACTTGAATCATG+AGG | + | chr7_1:74377869-74377888 | Msa1037680:three_prime_UTR | 30.0% |
| TTGAATGCAAAAACATCCAT+TGG | - | chr7_1:74377909-74377928 | None:intergenic | 30.0% | |
| !! | GACATTTTGAAAAGGTAGAG+AGG | - | chr7_1:74374746-74374765 | None:intergenic | 35.0% |
| ! | CTCTACCTTTTCAAAATGTC+CGG | + | chr7_1:74374746-74374765 | Msa1037680:exon | 35.0% |
| ! | AATCTTTTTGACGTTGGTGT+TGG | - | chr7_1:74375038-74375057 | None:intergenic | 35.0% |
| AACACCAACGTCAAAAAGAT+TGG | + | chr7_1:74375037-74375056 | Msa1037680:CDS | 35.0% | |
| ! | TGTACCAATCTTTTTGACGT+TGG | - | chr7_1:74375044-74375063 | None:intergenic | 35.0% |
| AAGACTACCCACAAACATTT+AGG | - | chr7_1:74375512-74375531 | None:intergenic | 35.0% | |
| CACAAGTGCTATCCATAAAA+TGG | - | chr7_1:74375547-74375566 | None:intergenic | 35.0% | |
| ATAGCACTTGTGTACCATAA+TGG | + | chr7_1:74375555-74375574 | Msa1037680:intron | 35.0% | |
| ACTAACAGAGTCTACGTTTA+GGG | - | chr7_1:74375735-74375754 | None:intergenic | 35.0% | |
| AGACTCTGTTAGTCAATTTC+AGG | + | chr7_1:74375742-74375761 | Msa1037680:intron | 35.0% | |
| GACTCTGTTAGTCAATTTCA+GGG | + | chr7_1:74375743-74375762 | Msa1037680:intron | 35.0% | |
| TCAGGGACTAAATTGACTAA+CGG | + | chr7_1:74375792-74375811 | Msa1037680:intron | 35.0% | |
| ACTAAATTGACTAGCAGTTC+TGG | + | chr7_1:74375817-74375836 | Msa1037680:intron | 35.0% | |
| CTAAATTGACTAGCAGTTCT+GGG | + | chr7_1:74375818-74375837 | Msa1037680:intron | 35.0% | |
| !! | AATTATCGACTTCGTAATGC+AGG | + | chr7_1:74376109-74376128 | Msa1037680:intron | 35.0% |
| AACAGAGAAGTGAATTCCTT+GGG | - | chr7_1:74376136-74376155 | None:intergenic | 35.0% | |
| AAACAGAGAAGTGAATTCCT+TGG | - | chr7_1:74376137-74376156 | None:intergenic | 35.0% | |
| TTCTGAACTTAGTCTGTGTT+TGG | + | chr7_1:74376226-74376245 | Msa1037680:intron | 35.0% | |
| CTAAAATCACGTAGGACATT+AGG | - | chr7_1:74376267-74376286 | None:intergenic | 35.0% | |
| ACAGTGTTCTTCTAACTAAC+TGG | + | chr7_1:74376543-74376562 | Msa1037680:intron | 35.0% | |
| AACTAACTGGTTATTGTTGC+AGG | + | chr7_1:74376556-74376575 | Msa1037680:intron | 35.0% | |
| ACTAACTGGTTATTGTTGCA+GGG | + | chr7_1:74376557-74376576 | Msa1037680:intron | 35.0% | |
| ! | ATCATAGTTCTGCTATACAG+AGG | - | chr7_1:74377073-74377092 | None:intergenic | 35.0% |
| ATGTGTATCCTTGTCTGTTT+CGG | + | chr7_1:74377095-74377114 | Msa1037680:intron | 35.0% | |
| ! | ATTTTACACCGAAACAGACA+AGG | - | chr7_1:74377106-74377125 | None:intergenic | 35.0% |
| GGAAGATGTAATGCAGAAAT+TGG | - | chr7_1:74377223-74377242 | None:intergenic | 35.0% | |
| !! | TTACAAGAGTATCACAGCTT+CGG | + | chr7_1:74377289-74377308 | Msa1037680:CDS | 35.0% |
| GTAGCCGCAAACATTTAAAA+AGG | - | chr7_1:74377379-74377398 | None:intergenic | 35.0% | |
| GCACAAGAAACTTCACAAAA+AGG | - | chr7_1:74377446-74377465 | None:intergenic | 35.0% | |
| ATGATATGATATGTCCCTTG+AGG | + | chr7_1:74377564-74377583 | Msa1037680:intron | 35.0% | |
| !! | CTTTTGATTGTGTGTATTGC+AGG | + | chr7_1:74377604-74377623 | Msa1037680:intron | 35.0% |
| AAATTCAAGGAGAAGGATAC+TGG | + | chr7_1:74377638-74377657 | Msa1037680:CDS | 35.0% | |
| AATTCAAGGAGAAGGATACT+GGG | + | chr7_1:74377639-74377658 | Msa1037680:CDS | 35.0% | |
| CTATCCTAAGCTATCAAGAA+TGG | - | chr7_1:74377716-74377735 | None:intergenic | 35.0% | |
| GTCAGTTGACCATGTTAATT+TGG | + | chr7_1:74377749-74377768 | Msa1037680:three_prime_UTR | 35.0% | |
| AGGTTGTATTGAGAGAGAGA+GGG | - | chr7_1:74374726-74374745 | None:intergenic | 40.0% | |
| !! | GGTAACCGGACATTTTGAAA+AGG | - | chr7_1:74374754-74374773 | None:intergenic | 40.0% |
| TGGTGAAGTGATACATGAGA+AGG | - | chr7_1:74375018-74375037 | None:intergenic | 40.0% | |
| GTGCTATCCATAAAATGGGT+GGG | - | chr7_1:74375542-74375561 | None:intergenic | 40.0% | |
| AGTGCTATCCATAAAATGGG+TGG | - | chr7_1:74375543-74375562 | None:intergenic | 40.0% | |
| CCACGTGACACATTCTAATT+GGG | - | chr7_1:74375593-74375612 | None:intergenic | 40.0% | |
| GACTAACAGAGTCTACGTTT+AGG | - | chr7_1:74375736-74375755 | None:intergenic | 40.0% | |
| TCAGGGACTAAAGTGACTAA+CGG | + | chr7_1:74375760-74375779 | Msa1037680:intron | 40.0% | |
| ACTAACGGAGTCTACATTCA+GGG | + | chr7_1:74375775-74375794 | Msa1037680:intron | 40.0% | |
| ! | AGTCACTTTAGTCTCAGGAT+AGG | - | chr7_1:74375893-74375912 | None:intergenic | 40.0% |
| CTATCTAACTAGTGACAGTG+TGG | + | chr7_1:74376007-74376026 | Msa1037680:intron | 40.0% | |
| ! | TGTTTTACAGTCTTCAGAGC+TGG | + | chr7_1:74376152-74376171 | Msa1037680:CDS | 40.0% |
| TTGAGAGATTTGACAAGGAC+AGG | + | chr7_1:74376585-74376604 | Msa1037680:CDS | 40.0% | |
| !!! | CGAGATGCGCTTTTAAGTTT+GGG | + | chr7_1:74376635-74376654 | Msa1037680:CDS | 40.0% |
| GTCTCCAAGTTTGACAAAAC+TGG | + | chr7_1:74376692-74376711 | Msa1037680:CDS | 40.0% | |
| TCCAAGTTTGACAAAACTGG+TGG | + | chr7_1:74376695-74376714 | Msa1037680:CDS | 40.0% | |
| ! | CTTCCTTTGTTTACCATTGC+AGG | + | chr7_1:74377145-74377164 | Msa1037680:intron | 40.0% |
| ACACCTGCAATGGTAAACAA+AGG | - | chr7_1:74377151-74377170 | None:intergenic | 40.0% | |
| ! | GGCATTTTATCTTGCCTCAA+GGG | - | chr7_1:74377581-74377600 | None:intergenic | 40.0% |
| ! | AGGCATTTTATCTTGCCTCA+AGG | - | chr7_1:74377582-74377601 | None:intergenic | 40.0% |
| AACGGACAAATTCAAGGAGA+AGG | + | chr7_1:74377631-74377650 | Msa1037680:CDS | 40.0% | |
| ATAGGAAAATGTTGCAGAGC+CGG | - | chr7_1:74377669-74377688 | None:intergenic | 40.0% | |
| ! | CTCTGCAACATTTTCCTATG+AGG | + | chr7_1:74377670-74377689 | Msa1037680:CDS | 40.0% |
| CCTAAGCTATCAAGAATGGT+AGG | - | chr7_1:74377712-74377731 | None:intergenic | 40.0% | |
| ! | CCTACCATTCTTGATAGCTT+AGG | + | chr7_1:74377709-74377728 | Msa1037680:CDS | 40.0% |
| TGTGGTTGAGTGAATTGCTT+TGG | + | chr7_1:74377788-74377807 | Msa1037680:three_prime_UTR | 40.0% | |
| GGTGTTCTTTACAACACCAA+TGG | + | chr7_1:74377890-74377909 | Msa1037680:three_prime_UTR | 40.0% | |
| TGCATTCAATGAGAGACACT+TGG | + | chr7_1:74377920-74377939 | Msa1037680:three_prime_UTR | 40.0% | |
| ATTCAATGAGAGACACTTGG+TGG | + | chr7_1:74377923-74377942 | Msa1037680:three_prime_UTR | 40.0% | |
| GAGGTTGTATTGAGAGAGAG+AGG | - | chr7_1:74374727-74374746 | None:intergenic | 45.0% | |
| ! | CATAACTGGGAGGCTGATTT+GGG | - | chr7_1:74374775-74374794 | None:intergenic | 45.0% |
| AGCATTGCTTGCATGCGATT+TGG | + | chr7_1:74375463-74375482 | Msa1037680:intron | 45.0% | |
| ACGCGTGTCCTAAATGTTTG+TGG | + | chr7_1:74375501-74375520 | Msa1037680:intron | 45.0% | |
| CGCGTGTCCTAAATGTTTGT+GGG | + | chr7_1:74375502-74375521 | Msa1037680:intron | 45.0% | |
| ! | GATGTGACCCACCCATTTTA+TGG | + | chr7_1:74375532-74375551 | Msa1037680:intron | 45.0% |
| CCCAATTAGAATGTGTCACG+TGG | + | chr7_1:74375590-74375609 | Msa1037680:intron | 45.0% | |
| GCCACGTGACACATTCTAAT+TGG | - | chr7_1:74375594-74375613 | None:intergenic | 45.0% | |
| TAGTCACCTTAGTCCCTGAA+TGG | + | chr7_1:74375660-74375679 | Msa1037680:intron | 45.0% | |
| AGTCACCTTAGTCCCTGAAT+GGG | + | chr7_1:74375661-74375680 | Msa1037680:intron | 45.0% | |
| GTCTACTCCTTTCCCATTCA+GGG | - | chr7_1:74375676-74375695 | None:intergenic | 45.0% | |
| TGTCTACTCCTTTCCCATTC+AGG | - | chr7_1:74375677-74375696 | None:intergenic | 45.0% | |
| GACTAACGGAGTCTACATTC+AGG | + | chr7_1:74375774-74375793 | Msa1037680:intron | 45.0% | |
| TTTACAGTCTTCAGAGCTGG+AGG | + | chr7_1:74376155-74376174 | Msa1037680:CDS | 45.0% | |
| TTACAGTCTTCAGAGCTGGA+GGG | + | chr7_1:74376156-74376175 | Msa1037680:CDS | 45.0% | |
| AGATTTGACAAGGACAGGAG+TGG | + | chr7_1:74376590-74376609 | Msa1037680:CDS | 45.0% | |
| !!! | GCGAGATGCGCTTTTAAGTT+TGG | + | chr7_1:74376634-74376653 | Msa1037680:CDS | 45.0% |
| !! | GGGTTATGCTGTTTCTCCAA+TGG | + | chr7_1:74376655-74376674 | Msa1037680:CDS | 45.0% |
| !! | TGCTGTTTCTCCAATGGTGT+TGG | + | chr7_1:74376661-74376680 | Msa1037680:CDS | 45.0% |
| !! | GCCACCAGTTTTGTCAAACT+TGG | - | chr7_1:74376699-74376718 | None:intergenic | 45.0% |
| CAAAACTGGTGGCAAAAGCA+AGG | + | chr7_1:74376706-74376725 | Msa1037680:CDS | 45.0% | |
| CAGTAAGACAACACCTGCAA+TGG | - | chr7_1:74377161-74377180 | None:intergenic | 45.0% | |
| ! | CAGGTGTTGTCTTACTGTGA+AGG | + | chr7_1:74377164-74377183 | Msa1037680:intron | 45.0% |
| GTGTGTATTGCAGGGACTAA+CGG | + | chr7_1:74377613-74377632 | Msa1037680:intron | 45.0% | |
| ! | GGGACTAACGGACAAATTCA+AGG | + | chr7_1:74377625-74377644 | Msa1037680:intron | 45.0% |
| GAGAAGGATACTGGGTATAC+CGG | + | chr7_1:74377647-74377666 | Msa1037680:CDS | 45.0% | |
| AGTCAGCATAAACGCCTCAT+AGG | - | chr7_1:74377687-74377706 | None:intergenic | 45.0% | |
| !! | AATTGTTTATTTAATTAAAA+AGG | + | chr7_1:74376793-74376812 | Msa1037680:CDS | 5.0% |
| CCATAACTGGGAGGCTGATT+TGG | - | chr7_1:74374776-74374795 | None:intergenic | 50.0% | |
| CCAAATCAGCCTCCCAGTTA+TGG | + | chr7_1:74374773-74374792 | Msa1037680:CDS | 50.0% | |
| CAGCCTCCCAGTTATGGTTA+CGG | + | chr7_1:74374779-74374798 | Msa1037680:CDS | 50.0% | |
| ATGGCAATAGCGACGCAAAC+GGG | - | chr7_1:74374850-74374869 | None:intergenic | 50.0% | |
| GATGGCAATAGCGACGCAAA+CGG | - | chr7_1:74374851-74374870 | None:intergenic | 50.0% | |
| TTGCCATCGACATTTCCTCC+TGG | + | chr7_1:74374863-74374882 | Msa1037680:CDS | 50.0% | |
| ATCGACATTTCCTCCTGGCA+CGG | + | chr7_1:74374868-74374887 | Msa1037680:CDS | 50.0% | |
| GAAAGCAAGCCACGATGCTA+GGG | - | chr7_1:74374895-74374914 | None:intergenic | 50.0% | |
| TGAAAGCAAGCCACGATGCT+AGG | - | chr7_1:74374896-74374915 | None:intergenic | 50.0% | |
| !! | TAGCATCGTGGCTTGCTTTC+AGG | + | chr7_1:74374895-74374914 | Msa1037680:CDS | 50.0% |
| ! | TTGCTTTCAGGTGGCTGATC+AGG | + | chr7_1:74374907-74374926 | Msa1037680:CDS | 50.0% |
| ! | TTTCAGGTGGCTGATCAGGA+CGG | + | chr7_1:74374911-74374930 | Msa1037680:CDS | 50.0% |
| !! | AAGCGGGTTGATCGACGATA+AGG | + | chr7_1:74374934-74374953 | Msa1037680:CDS | 50.0% |
| CGACGATAAGGAGTTGCAGA+AGG | + | chr7_1:74374946-74374965 | Msa1037680:CDS | 50.0% | |
| CCTTTCCCATTCAGGGACTA+AGG | - | chr7_1:74375669-74375688 | None:intergenic | 50.0% | |
| CCTTAGTCCCTGAATGGGAA+AGG | + | chr7_1:74375666-74375685 | Msa1037680:intron | 50.0% | |
| ACTTCGTAATGCAGGACCCA+AGG | + | chr7_1:74376117-74376136 | Msa1037680:intron | 50.0% | |
| ACGAGCAAGTCCAACACCAT+TGG | - | chr7_1:74376674-74376693 | None:intergenic | 50.0% | |
| GGTTTGGAGATGGATGTGTG+TGG | + | chr7_1:74377770-74377789 | Msa1037680:three_prime_UTR | 50.0% | |
| !! | GGGAGGCTGATTTGGGTAAC+CGG | - | chr7_1:74374768-74374787 | None:intergenic | 55.0% |
| GGTGCGCCGTAACCATAACT+GGG | - | chr7_1:74374788-74374807 | None:intergenic | 55.0% | |
| TGGTGCGCCGTAACCATAAC+TGG | - | chr7_1:74374789-74374808 | None:intergenic | 55.0% | |
| !! | GCAAACGGGCTAGCATATGC+CGG | - | chr7_1:74374836-74374855 | None:intergenic | 55.0% |
| GTGCCAGGAGGAAATGTCGA+TGG | - | chr7_1:74374869-74374888 | None:intergenic | 55.0% | |
| !! | CATCGTGGCTTGCTTTCAGG+TGG | + | chr7_1:74374898-74374917 | Msa1037680:CDS | 55.0% |
| GCGCCGTAACCATAACTGGG+AGG | - | chr7_1:74374785-74374804 | None:intergenic | 60.0% | |
| !! | GGTGGTGGGTAGGATTGGGA+CGG | - | chr7_1:74374815-74374834 | None:intergenic | 60.0% |
| GTCCCAATCCTACCCACCAC+CGG | + | chr7_1:74374814-74374833 | Msa1037680:CDS | 60.0% | |
| !! | TGCCGGTGGTGGGTAGGATT+GGG | - | chr7_1:74374819-74374838 | None:intergenic | 60.0% |
| !! | ATGCCGGTGGTGGGTAGGAT+TGG | - | chr7_1:74374820-74374839 | None:intergenic | 60.0% |
| !! | AGCATATGCCGGTGGTGGGT+AGG | - | chr7_1:74374825-74374844 | None:intergenic | 60.0% |
| GGCTAGCATATGCCGGTGGT+GGG | - | chr7_1:74374829-74374848 | None:intergenic | 60.0% | |
| !! | AACGGGCTAGCATATGCCGG+TGG | - | chr7_1:74374833-74374852 | None:intergenic | 60.0% |
| GTGGCTGATCAGGACGGAAG+CGG | + | chr7_1:74374917-74374936 | Msa1037680:CDS | 60.0% | |
| TGGCTGATCAGGACGGAAGC+GGG | + | chr7_1:74374918-74374937 | Msa1037680:CDS | 60.0% | |
| GGTGGGTAGGATTGGGACGG+CGG | - | chr7_1:74374812-74374831 | None:intergenic | 65.0% | |
| ! | GGGCTAGCATATGCCGGTGG+TGG | - | chr7_1:74374830-74374849 | None:intergenic | 65.0% |
| ATGCTAGGGTCCGTGCCAGG+AGG | - | chr7_1:74374881-74374900 | None:intergenic | 65.0% | |
| ACGATGCTAGGGTCCGTGCC+AGG | - | chr7_1:74374884-74374903 | None:intergenic | 65.0% | |
| TGGCACGGACCCTAGCATCG+TGG | + | chr7_1:74374883-74374902 | Msa1037680:CDS | 65.0% | |
| GGGTAGGATTGGGACGGCGG+TGG | - | chr7_1:74374809-74374828 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 74374681 | 74378000 | 74374681 | ID=Msa1037680;Name=Msa1037680 |
| chr7_1 | mRNA | 74374681 | 74378000 | 74374681 | ID=Msa1037680-mRNA-1;Parent=Msa1037680;Name=Msa1037680-mRNA-1;_AED=0.06;_eAED=0.06;_QI=80|0.4|0.66|0.83|1|1|6|270|263 |
| chr7_1 | exon | 74374681 | 74375058 | 74374681 | ID=Msa1037680-mRNA-1:exon:18686;Parent=Msa1037680-mRNA-1 |
| chr7_1 | exon | 74376131 | 74376177 | 74376131 | ID=Msa1037680-mRNA-1:exon:18687;Parent=Msa1037680-mRNA-1 |
| chr7_1 | exon | 74376578 | 74376850 | 74376578 | ID=Msa1037680-mRNA-1:exon:18688;Parent=Msa1037680-mRNA-1 |
| chr7_1 | exon | 74377167 | 74377185 | 74377167 | ID=Msa1037680-mRNA-1:exon:18689;Parent=Msa1037680-mRNA-1 |
| chr7_1 | exon | 74377261 | 74377310 | 74377261 | ID=Msa1037680-mRNA-1:exon:18690;Parent=Msa1037680-mRNA-1 |
| chr7_1 | exon | 74377626 | 74378000 | 74377626 | ID=Msa1037680-mRNA-1:exon:18691;Parent=Msa1037680-mRNA-1 |
| chr7_1 | five_prime_UTR | 74374681 | 74374760 | 74374681 | ID=Msa1037680-mRNA-1:five_prime_utr;Parent=Msa1037680-mRNA-1 |
| chr7_1 | CDS | 74374761 | 74375058 | 74374761 | ID=Msa1037680-mRNA-1:cds;Parent=Msa1037680-mRNA-1 |
| chr7_1 | CDS | 74376131 | 74376177 | 74376131 | ID=Msa1037680-mRNA-1:cds;Parent=Msa1037680-mRNA-1 |
| chr7_1 | CDS | 74376578 | 74376850 | 74376578 | ID=Msa1037680-mRNA-1:cds;Parent=Msa1037680-mRNA-1 |
| chr7_1 | CDS | 74377167 | 74377185 | 74377167 | ID=Msa1037680-mRNA-1:cds;Parent=Msa1037680-mRNA-1 |
| chr7_1 | CDS | 74377261 | 74377310 | 74377261 | ID=Msa1037680-mRNA-1:cds;Parent=Msa1037680-mRNA-1 |
| chr7_1 | CDS | 74377626 | 74377730 | 74377626 | ID=Msa1037680-mRNA-1:cds;Parent=Msa1037680-mRNA-1 |
| chr7_1 | three_prime_UTR | 74377731 | 74378000 | 74377731 | ID=Msa1037680-mRNA-1:three_prime_utr;Parent=Msa1037680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
