Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038070 | XP_024626069.1 | 67.626 | 139 | 24 | 2 | 1 | 120 | 292 | 428 | 4.87e-47 | 177 |
| Msa1038070 | XP_024626069.1 | 89.180 | 305 | 15 | 2 | 104 | 408 | 1 | 287 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038070 | sp|Q9FT92|Y5843_ARATH | 33.486 | 218 | 125 | 4 | 192 | 408 | 10 | 208 | 6.84e-25 | 110 |
| Msa1038070 | sp|Q9FT92|Y5843_ARATH | 35.433 | 127 | 59 | 3 | 2 | 109 | 214 | 336 | 3.90e-12 | 71.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038070 | A0A396HCD7 | 80.000 | 50 | 8 | 1 | 1 | 50 | 272 | 319 | 2.35e-13 | 81.6 |
| Msa1038070 | A0A396HCD7 | 93.284 | 268 | 16 | 1 | 141 | 408 | 2 | 267 | 0.0 | 518 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1038070 | TR | SWI/SNF-BAF60b |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1038070 | Msa1070420 | 0.805258 | 1.456156e-49 | -8.615850e-47 |
| Msa1038070 | Msa1446770 | 0.904860 | 7.885246e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038070 | MtrunA17_Chr7g0274571 | 93.284 | 268 | 16 | 1 | 141 | 408 | 2 | 267 | 0.0 | 518 |
| Msa1038070 | MtrunA17_Chr7g0274571 | 80.000 | 50 | 8 | 1 | 1 | 50 | 272 | 319 | 4.52e-17 | 81.6 |
| Msa1038070 | MtrunA17_Chr7g0274561 | 68.772 | 285 | 79 | 3 | 125 | 408 | 24 | 299 | 1.15e-132 | 388 |
| Msa1038070 | MtrunA17_Chr7g0274561 | 64.948 | 97 | 2 | 2 | 1 | 67 | 304 | 398 | 2.33e-25 | 107 |
| Msa1038070 | MtrunA17_Chr6g0477441 | 35.821 | 201 | 115 | 3 | 212 | 408 | 35 | 225 | 8.16e-30 | 118 |
| Msa1038070 | MtrunA17_Chr6g0477441 | 52.564 | 78 | 35 | 1 | 5 | 82 | 235 | 310 | 4.19e-15 | 76.3 |
| Msa1038070 | MtrunA17_Chr3g0109611 | 30.645 | 310 | 183 | 6 | 122 | 408 | 117 | 417 | 1.90e-28 | 117 |
| Msa1038070 | MtrunA17_Chr3g0109611 | 45.783 | 83 | 39 | 1 | 5 | 81 | 430 | 512 | 2.82e-15 | 77.8 |
| Msa1038070 | MtrunA17_Chr3g0109631 | 30.671 | 313 | 179 | 8 | 122 | 408 | 117 | 417 | 1.05e-27 | 114 |
| Msa1038070 | MtrunA17_Chr3g0109591 | 28.617 | 311 | 189 | 5 | 122 | 407 | 117 | 419 | 2.95e-23 | 100 |
| Msa1038070 | MtrunA17_Chr3g0109641 | 29.245 | 318 | 178 | 9 | 122 | 409 | 117 | 417 | 2.11e-21 | 97.1 |
| Msa1038070 | MtrunA17_Chr3g0109641 | 38.732 | 142 | 60 | 4 | 1 | 119 | 482 | 619 | 2.53e-16 | 81.3 |
| Msa1038070 | MtrunA17_Chr5g0405071 | 28.146 | 302 | 180 | 9 | 130 | 407 | 207 | 495 | 1.91e-17 | 84.3 |
| Msa1038070 | MtrunA17_Chr3g0109661 | 53.125 | 64 | 30 | 0 | 345 | 408 | 38 | 101 | 2.38e-15 | 73.9 |
| Msa1038070 | MtrunA17_Chr3g0109581 | 39.744 | 78 | 45 | 1 | 5 | 82 | 64 | 139 | 8.45e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038070 | AT5G63700.1 | 29.598 | 348 | 175 | 7 | 121 | 410 | 123 | 458 | 4.67e-30 | 122 |
| Msa1038070 | AT5G63700.1 | 38.710 | 124 | 55 | 2 | 2 | 106 | 463 | 584 | 2.86e-16 | 81.3 |
| Msa1038070 | AT5G63700.2 | 29.915 | 351 | 170 | 8 | 121 | 410 | 123 | 458 | 8.68e-30 | 121 |
| Msa1038070 | AT5G08430.2 | 33.486 | 218 | 125 | 4 | 192 | 408 | 10 | 208 | 4.68e-26 | 109 |
| Msa1038070 | AT5G08430.2 | 35.433 | 127 | 59 | 3 | 2 | 109 | 214 | 336 | 2.59e-13 | 71.6 |
| Msa1038070 | AT5G08430.1 | 33.486 | 218 | 125 | 4 | 192 | 408 | 10 | 208 | 6.96e-26 | 110 |
| Msa1038070 | AT5G08430.1 | 35.433 | 127 | 59 | 3 | 2 | 109 | 214 | 336 | 3.97e-13 | 71.6 |
| Msa1038070 | AT5G23480.1 | 33.184 | 223 | 121 | 7 | 191 | 408 | 3 | 202 | 1.13e-18 | 87.8 |
| Msa1038070 | AT5G23480.3 | 33.184 | 223 | 121 | 7 | 191 | 408 | 3 | 202 | 1.18e-18 | 88.2 |
| Msa1038070 | AT5G23480.3 | 48.718 | 78 | 35 | 2 | 3 | 77 | 209 | 284 | 6.63e-14 | 73.6 |
| Msa1038070 | AT5G23480.2 | 33.184 | 223 | 121 | 7 | 191 | 408 | 3 | 202 | 1.18e-18 | 88.2 |
| Msa1038070 | AT5G23480.2 | 48.718 | 78 | 35 | 2 | 3 | 77 | 209 | 284 | 6.63e-14 | 73.6 |
| Msa1038070 | AT5G23480.5 | 33.184 | 223 | 121 | 7 | 191 | 408 | 3 | 202 | 1.18e-18 | 88.2 |
| Msa1038070 | AT5G23480.5 | 48.718 | 78 | 35 | 2 | 3 | 77 | 209 | 284 | 6.63e-14 | 73.6 |
| Msa1038070 | AT5G23480.4 | 33.184 | 223 | 121 | 7 | 191 | 408 | 3 | 202 | 1.18e-18 | 88.2 |
| Msa1038070 | AT5G23480.4 | 48.718 | 78 | 35 | 2 | 3 | 77 | 209 | 284 | 6.63e-14 | 73.6 |
| Msa1038070 | AT5G23480.6 | 33.184 | 223 | 121 | 7 | 191 | 408 | 3 | 202 | 1.18e-18 | 88.2 |
| Msa1038070 | AT5G23480.6 | 48.718 | 78 | 35 | 2 | 3 | 77 | 209 | 284 | 6.63e-14 | 73.6 |
Find 86 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTACAACAGTTAATTT+TGG | 0.146059 | 7_1:+74879678 | None:intergenic |
| TGTTGTCCGTCGAACAATTT+TGG | 0.226288 | 7_1:+74877719 | None:intergenic |
| AGCAAGATTGTGAGGATTTA+CGG | 0.274046 | 7_1:-74879725 | Msa1038070:CDS |
| ACCTTACTCGCAAAGCTTTC+AGG | 0.287933 | 7_1:+74877523 | None:intergenic |
| TGCACTTCCCAACAAAATAA+AGG | 0.317725 | 7_1:-74878154 | Msa1038070:CDS |
| ATTCCTTAGCTTATGATCAT+TGG | 0.326667 | 7_1:+74877468 | None:intergenic |
| CTATACCGCTTCCGTTTGTT+CGG | 0.331205 | 7_1:+74878036 | None:intergenic |
| AATTACTCCAATGGAAATAA+AGG | 0.340270 | 7_1:-74878078 | Msa1038070:CDS |
| TCTAGCTTCCTGGCATCTAT+AGG | 0.360380 | 7_1:-74877976 | Msa1038070:CDS |
| TTTACATCCCTTCGCATCAT+TGG | 0.377241 | 7_1:+74877937 | None:intergenic |
| CGAACACCAAGCTTCGCTTT+AGG | 0.380474 | 7_1:+74877560 | None:intergenic |
| GCCTGAAAGCTTTGCGAGTA+AGG | 0.381269 | 7_1:-74877524 | Msa1038070:CDS |
| ATCCCTTCGCATCATTGGTT+CGG | 0.392576 | 7_1:+74877942 | None:intergenic |
| AATGGAAATAAAGGTTATTC+AGG | 0.394196 | 7_1:-74878069 | Msa1038070:CDS |
| TGAATAACCTTTATTTCCAT+TGG | 0.397923 | 7_1:+74878071 | None:intergenic |
| ATTCCTTGAATAGACATTCA+TGG | 0.402864 | 7_1:+74878229 | None:intergenic |
| GAATTCGTTGGATGGGCATC+AGG | 0.404245 | 7_1:-74878006 | Msa1038070:CDS |
| TATCATGTTGTGAGAGTCAT+AGG | 0.404713 | 7_1:-74877442 | Msa1038070:CDS |
| AGGACCTCTCTCTAGCTTCC+TGG | 0.410169 | 7_1:-74877986 | Msa1038070:CDS |
| AAACGGAAGCGGTATAGTTC+AGG | 0.411949 | 7_1:-74878030 | Msa1038070:CDS |
| CTAGCTTCCTGGCATCTATA+GGG | 0.417278 | 7_1:-74877975 | Msa1038070:CDS |
| TCTCATGTTTGAATACATTA+CGG | 0.427420 | 7_1:-74877911 | Msa1038070:CDS |
| TGCGGAAAGATCGGTTGATT+CGG | 0.428580 | 7_1:-74877767 | Msa1038070:CDS |
| GAACATGATGAAATGTCTAA+TGG | 0.435204 | 7_1:-74879892 | None:intergenic |
| TCAGAGATGGAAATAGCTTT+AGG | 0.435649 | 7_1:+74879844 | None:intergenic |
| TTTGCAGAACAAAATAAGCT+TGG | 0.441190 | 7_1:-74878265 | Msa1038070:intron |
| ATTGGAAACAACTTATCGTC+AGG | 0.444881 | 7_1:+74877847 | None:intergenic |
| TATCGATGATGAAACATGTA+TGG | 0.454872 | 7_1:-74877692 | Msa1038070:CDS |
| AACCCATGAATGTCTATTCA+AGG | 0.456893 | 7_1:-74878232 | Msa1038070:CDS |
| CGCAATGTGAAACTTGAGTA+GGG | 0.459804 | 7_1:+74877786 | None:intergenic |
| TGCATTACCTCCATAAGCTC+GGG | 0.466909 | 7_1:+74878738 | None:intergenic |
| AACAATTGTTCTAGTTTCTG+TGG | 0.467697 | 7_1:+74878783 | None:intergenic |
| TTCCTTGAATAGACATTCAT+GGG | 0.468587 | 7_1:+74878230 | None:intergenic |
| GCACTTCCCAACAAAATAAA+GGG | 0.474252 | 7_1:-74878153 | Msa1038070:CDS |
| ATGTCTATTCAAGGAATTTG+AGG | 0.475733 | 7_1:-74878223 | Msa1038070:CDS |
| GAAAATGTTGAGGTGAGAAA+AGG | 0.496685 | 7_1:-74878201 | Msa1038070:CDS |
| ATCGGTTGATTCGGCTGGAA+AGG | 0.496714 | 7_1:-74877758 | Msa1038070:CDS |
| AGAAACTAGAACAATTGTTA+AGG | 0.509733 | 7_1:-74878779 | Msa1038070:CDS |
| CAGAACAAAATAAGCTTGGA+TGG | 0.511928 | 7_1:-74878261 | Msa1038070:CDS |
| GTTTCACATTGCGGAAAGAT+CGG | 0.513307 | 7_1:-74877776 | Msa1038070:CDS |
| ATGATCATTGGAATCTACTC+TGG | 0.514132 | 7_1:+74877480 | None:intergenic |
| TTAATCAATGCAAAACATCC+AGG | 0.516424 | 7_1:+74877607 | None:intergenic |
| AATGATTCTGATGAAGAAAG+TGG | 0.517048 | 7_1:-74878714 | Msa1038070:CDS |
| AAGTGGGGAAACAGATAGCC+AGG | 0.518858 | 7_1:-74878697 | Msa1038070:CDS |
| AACGGAAGCGGTATAGTTCA+GGG | 0.521055 | 7_1:-74878029 | Msa1038070:CDS |
| CCGCAATGTGAAACTTGAGT+AGG | 0.524398 | 7_1:+74877785 | None:intergenic |
| GAAAGATCGGTTGATTCGGC+TGG | 0.525189 | 7_1:-74877763 | Msa1038070:CDS |
| TTCAGGGGAATTCGTTGGAT+GGG | 0.525846 | 7_1:-74878013 | Msa1038070:CDS |
| TATAGTTCAGGGGAATTCGT+TGG | 0.533847 | 7_1:-74878018 | Msa1038070:CDS |
| CCTCATCTGAGTCATGGTCC+TGG | 0.538187 | 7_1:+74878679 | None:intergenic |
| ATGCATTACCTCCATAAGCT+CGG | 0.545799 | 7_1:+74878737 | None:intergenic |
| GGAATTTGAGGAAAATGTTG+AGG | 0.552644 | 7_1:-74878211 | Msa1038070:CDS |
| CATATCTCCCTATAGATGCC+AGG | 0.553627 | 7_1:+74877968 | None:intergenic |
| GTATGCATAAGCCGAACAAA+CGG | 0.559115 | 7_1:-74878047 | Msa1038070:CDS |
| ATGATTCTGATGAAGAAAGT+GGG | 0.561773 | 7_1:-74878713 | Msa1038070:CDS |
| TTCGTCAGAGAGCTCAGAGA+TGG | 0.562351 | 7_1:+74879831 | None:intergenic |
| AGCTTTGCGAGTAAGGTGGT+TGG | 0.565903 | 7_1:-74877517 | Msa1038070:CDS |
| TGGAAATAGCTTTAGGCATG+AGG | 0.567111 | 7_1:+74879851 | None:intergenic |
| GTTCAGGGGAATTCGTTGGA+TGG | 0.572914 | 7_1:-74878014 | Msa1038070:CDS |
| GGTGATACGTGTATAAAACC+TGG | 0.573802 | 7_1:-74877625 | Msa1038070:CDS |
| TTTGAATCTGCAAGTAGACT+AGG | 0.579224 | 7_1:+74879090 | None:intergenic |
| AAACCGAACCAATGATGCGA+AGG | 0.581525 | 7_1:-74877945 | Msa1038070:CDS |
| ATTCCAATGATCATAAGCTA+AGG | 0.583714 | 7_1:-74877471 | Msa1038070:CDS |
| TATCTACCTAAAGCGAAGCT+TGG | 0.591743 | 7_1:-74877566 | Msa1038070:CDS |
| GGAAATAGCTTTAGGCATGA+GGG | 0.596323 | 7_1:+74879852 | None:intergenic |
| CACTTACCTCATCTGAGTCA+TGG | 0.599815 | 7_1:+74878673 | None:intergenic |
| GAAGGAGGATCTTCAAGAGA+AGG | 0.601055 | 7_1:-74879577 | Msa1038070:intron |
| TTACTTACAGCAAGATTGTG+AGG | 0.605927 | 7_1:-74879733 | Msa1038070:intron |
| TTTCTTCTTCGCCTTCGCTG+TGG | 0.614047 | 7_1:+74878106 | None:intergenic |
| TTGGAAACAACTTATCGTCA+GGG | 0.616900 | 7_1:+74877848 | None:intergenic |
| TGAAAGCTTTGCGAGTAAGG+TGG | 0.622790 | 7_1:-74877521 | Msa1038070:CDS |
| TGATTCTGATGAAGAAAGTG+GGG | 0.623371 | 7_1:-74878712 | Msa1038070:CDS |
| GCATTACCTCCATAAGCTCG+GGG | 0.625307 | 7_1:+74878739 | None:intergenic |
| ATAAGCCGAACAAACGGAAG+CGG | 0.632102 | 7_1:-74878041 | Msa1038070:CDS |
| CGTCATACAAGCCACAGCGA+AGG | 0.635219 | 7_1:-74878117 | Msa1038070:CDS |
| AACCGAACCAATGATGCGAA+GGG | 0.642463 | 7_1:-74877944 | Msa1038070:CDS |
| CCAAAACCAAAATTGTTCGA+CGG | 0.647694 | 7_1:-74877725 | Msa1038070:CDS |
| CCTACTCAAGTTTCACATTG+CGG | 0.649142 | 7_1:-74877785 | Msa1038070:CDS |
| ACGGAAGCGGTATAGTTCAG+GGG | 0.673905 | 7_1:-74878028 | Msa1038070:CDS |
| GCAATGTGAAACTTGAGTAG+GGG | 0.678921 | 7_1:+74877787 | None:intergenic |
| CCAGGACCATGACTCAGATG+AGG | 0.678929 | 7_1:-74878679 | Msa1038070:intron |
| GATGCCAGGAAGCTAGAGAG+AGG | 0.686776 | 7_1:+74877982 | None:intergenic |
| TCTCTGACGAAGATTTCACA+AGG | 0.687797 | 7_1:-74879819 | Msa1038070:CDS |
| CATTACCTCCATAAGCTCGG+GGG | 0.731541 | 7_1:+74878740 | None:intergenic |
| CTCTGACGAAGATTTCACAA+GGG | 0.735001 | 7_1:-74879818 | Msa1038070:CDS |
| GAAGGCTACAAGTCTTCACG+AGG | 0.740812 | 7_1:-74879559 | Msa1038070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTGTTATTCTAATAAA+AGG | + | chr7_1:74877939-74877958 | None:intergenic | 10.0% |
| !!! | TGAATTTTATTATATGTCTA+AGG | + | chr7_1:74877999-74878018 | None:intergenic | 15.0% |
| !! | AGATTAACAAATTTATAAAG+TGG | + | chr7_1:74878132-74878151 | None:intergenic | 15.0% |
| !! | ACATTATCTAAGAATAAATT+TGG | + | chr7_1:74878754-74878773 | None:intergenic | 15.0% |
| !! | CAGTGAAAATATTATTATCA+TGG | - | chr7_1:74877525-74877544 | Msa1038070:CDS | 20.0% |
| !!! | AACTTACAACAGTTAATTTT+GGG | + | chr7_1:74877627-74877646 | None:intergenic | 20.0% |
| !!! | ATGTAATCTGTGATTATTTT+TGG | - | chr7_1:74878095-74878114 | Msa1038070:CDS | 20.0% |
| !!! | CATATTTTTTTTCTTAAGTC+TGG | - | chr7_1:74878416-74878435 | Msa1038070:intron | 20.0% |
| !! | AAATTGCATTACTAAATGAA+AGG | - | chr7_1:74878482-74878501 | Msa1038070:intron | 20.0% |
| !! | AATTGCATTACTAAATGAAA+GGG | - | chr7_1:74878483-74878502 | Msa1038070:intron | 20.0% |
| !! | TAAGTGTATTTAATTGAAGA+TGG | - | chr7_1:74878647-74878666 | Msa1038070:intron | 20.0% |
| !! | ATAGATTGTAGAACAAAATT+TGG | - | chr7_1:74878671-74878690 | Msa1038070:intron | 20.0% |
| !! | TCAAAATGATATATTGTGTT+TGG | + | chr7_1:74878966-74878985 | None:intergenic | 20.0% |
| !!! | TTTTTAACAAAAGACGATAA+AGG | + | chr7_1:74879001-74879020 | None:intergenic | 20.0% |
| !!! | ATGACTTTCTTTTTAAAGAT+TGG | + | chr7_1:74879477-74879496 | None:intergenic | 20.0% |
| !! | CAACTTACAACAGTTAATTT+TGG | + | chr7_1:74877628-74877647 | None:intergenic | 25.0% |
| ! | TTCTGATCTATAACAAGTTT+AGG | - | chr7_1:74877845-74877864 | Msa1038070:CDS | 25.0% |
| !!! | TTTAGGTTAGATGTATGTTT+TGG | - | chr7_1:74877862-74877881 | Msa1038070:CDS | 25.0% |
| ! | CATTTCTATATGATACAAGA+AGG | + | chr7_1:74878262-74878281 | None:intergenic | 25.0% |
| ! | AGAAACTAGAACAATTGTTA+AGG | - | chr7_1:74878524-74878543 | Msa1038070:intron | 25.0% |
| !!! | CATTTGTTTTTTACTTCCAA+AGG | - | chr7_1:74878811-74878830 | Msa1038070:intron | 25.0% |
| !!! | TCTTTACCCTTTATTTTGTT+GGG | + | chr7_1:74879159-74879178 | None:intergenic | 25.0% |
| !!! | ATCTTTACCCTTTATTTTGT+TGG | + | chr7_1:74879160-74879179 | None:intergenic | 25.0% |
| ! | GAAAAACAAAATTACTCCAA+TGG | - | chr7_1:74879216-74879235 | Msa1038070:intron | 25.0% |
| ! | AATTACTCCAATGGAAATAA+AGG | - | chr7_1:74879225-74879244 | Msa1038070:intron | 25.0% |
| !! | TGAATAACCTTTATTTCCAT+TGG | + | chr7_1:74879235-74879254 | None:intergenic | 25.0% |
| ! | AATGGAAATAAAGGTTATTC+AGG | - | chr7_1:74879234-74879253 | Msa1038070:intron | 25.0% |
| ! | TCTCATGTTTGAATACATTA+CGG | - | chr7_1:74879392-74879411 | Msa1038070:intron | 25.0% |
| ! | GAAAAACCTTTGTTGAAAAA+AGG | - | chr7_1:74879657-74879676 | Msa1038070:intron | 25.0% |
| TTACGGAAAAAAGTGAAAAC+TGG | - | chr7_1:74877595-74877614 | Msa1038070:CDS | 30.0% | |
| CAGAAAAAATTGAACATCAG+TGG | + | chr7_1:74877830-74877849 | None:intergenic | 30.0% | |
| AAAGGATTGTCTACAGAAAA+TGG | + | chr7_1:74877921-74877940 | None:intergenic | 30.0% | |
| !!! | GGCTATTTTGTTTTACTCAT+TGG | + | chr7_1:74877978-74877997 | None:intergenic | 30.0% |
| AGGAACATATTCATAAAGCA+AGG | + | chr7_1:74878174-74878193 | None:intergenic | 30.0% | |
| !! | ACAAAGACATAATTTGTTGC+GGG | + | chr7_1:74878332-74878351 | None:intergenic | 30.0% |
| !! | GACAAAGACATAATTTGTTG+CGG | + | chr7_1:74878333-74878352 | None:intergenic | 30.0% |
| ! | GTTTTACTACACACATGTAT+GGG | + | chr7_1:74878361-74878380 | None:intergenic | 30.0% |
| TAGTAAAACGTACATGTATC+TGG | - | chr7_1:74878372-74878391 | Msa1038070:intron | 30.0% | |
| !! | AACAATTGTTCTAGTTTCTG+TGG | + | chr7_1:74878523-74878542 | None:intergenic | 30.0% |
| AATGATTCTGATGAAGAAAG+TGG | - | chr7_1:74878589-74878608 | Msa1038070:intron | 30.0% | |
| ATGATTCTGATGAAGAAAGT+GGG | - | chr7_1:74878590-74878609 | Msa1038070:intron | 30.0% | |
| AACAAAATTTGGACATGACT+TGG | - | chr7_1:74878682-74878701 | Msa1038070:CDS | 30.0% | |
| TAGGGTTTAGTGTATTTACT+TGG | - | chr7_1:74878713-74878732 | Msa1038070:CDS | 30.0% | |
| ! | AAATGTTTTCATGTTCAGCA+AGG | + | chr7_1:74878796-74878815 | None:intergenic | 30.0% |
| TTTATCTTAAAATCATGCCC+AGG | - | chr7_1:74878923-74878942 | Msa1038070:intron | 30.0% | |
| ATAAAATTGCATATCTGCCT+GGG | + | chr7_1:74878943-74878962 | None:intergenic | 30.0% | |
| TTTGCAGAACAAAATAAGCT+TGG | - | chr7_1:74879038-74879057 | Msa1038070:intron | 30.0% | |
| TTCCTTGAATAGACATTCAT+GGG | + | chr7_1:74879076-74879095 | None:intergenic | 30.0% | |
| ATTCCTTGAATAGACATTCA+TGG | + | chr7_1:74879077-74879096 | None:intergenic | 30.0% | |
| ATGTCTATTCAAGGAATTTG+AGG | - | chr7_1:74879080-74879099 | Msa1038070:intron | 30.0% | |
| TATCGATGATGAAACATGTA+TGG | - | chr7_1:74879611-74879630 | Msa1038070:intron | 30.0% | |
| !!! | GTATCACCTTTTTTCAACAA+AGG | + | chr7_1:74879666-74879685 | None:intergenic | 30.0% |
| TTAATCAATGCAAAACATCC+AGG | + | chr7_1:74879699-74879718 | None:intergenic | 30.0% | |
| ATTCCAATGATCATAAGCTA+AGG | - | chr7_1:74879832-74879851 | Msa1038070:CDS | 30.0% | |
| ATTCCTTAGCTTATGATCAT+TGG | + | chr7_1:74879838-74879857 | None:intergenic | 30.0% | |
| TCAGAGATGGAAATAGCTTT+AGG | + | chr7_1:74877462-74877481 | None:intergenic | 35.0% | |
| TTACTTACAGCAAGATTGTG+AGG | - | chr7_1:74877570-74877589 | Msa1038070:CDS | 35.0% | |
| AGCAAGATTGTGAGGATTTA+CGG | - | chr7_1:74877578-74877597 | Msa1038070:CDS | 35.0% | |
| !!! | TTAACTTCTTTTTTCCCTGC+TGG | - | chr7_1:74877698-74877717 | Msa1038070:CDS | 35.0% |
| TATGAATATGTTCCTGCTAG+TGG | - | chr7_1:74878179-74878198 | Msa1038070:CDS | 35.0% | |
| TTTGAATCTGCAAGTAGACT+AGG | + | chr7_1:74878216-74878235 | None:intergenic | 35.0% | |
| ! | CGTTTTACTACACACATGTA+TGG | + | chr7_1:74878362-74878381 | None:intergenic | 35.0% |
| TTGTACAACACAAACAGTCA+AGG | + | chr7_1:74878462-74878481 | None:intergenic | 35.0% | |
| TGATTCTGATGAAGAAAGTG+GGG | - | chr7_1:74878591-74878610 | Msa1038070:intron | 35.0% | |
| ! | AAATTTGGACATGACTTGGA+TGG | - | chr7_1:74878686-74878705 | Msa1038070:CDS | 35.0% |
| ! | AATTTGGACATGACTTGGAT+GGG | - | chr7_1:74878687-74878706 | Msa1038070:CDS | 35.0% |
| !!! | CAATTGTTTTTACGCTCCTT+TGG | + | chr7_1:74878830-74878849 | None:intergenic | 35.0% |
| GATAAAATTGCATATCTGCC+TGG | + | chr7_1:74878944-74878963 | None:intergenic | 35.0% | |
| CAGAACAAAATAAGCTTGGA+TGG | - | chr7_1:74879042-74879061 | Msa1038070:intron | 35.0% | |
| AACCCATGAATGTCTATTCA+AGG | - | chr7_1:74879071-74879090 | Msa1038070:intron | 35.0% | |
| GGAATTTGAGGAAAATGTTG+AGG | - | chr7_1:74879092-74879111 | Msa1038070:CDS | 35.0% | |
| GAAAATGTTGAGGTGAGAAA+AGG | - | chr7_1:74879102-74879121 | Msa1038070:CDS | 35.0% | |
| TGCACTTCCCAACAAAATAA+AGG | - | chr7_1:74879149-74879168 | Msa1038070:intron | 35.0% | |
| GCACTTCCCAACAAAATAAA+GGG | - | chr7_1:74879150-74879169 | Msa1038070:intron | 35.0% | |
| TTGGAAACAACTTATCGTCA+GGG | + | chr7_1:74879458-74879477 | None:intergenic | 35.0% | |
| ATTGGAAACAACTTATCGTC+AGG | + | chr7_1:74879459-74879478 | None:intergenic | 35.0% | |
| CCAAAACCAAAATTGTTCGA+CGG | - | chr7_1:74879578-74879597 | Msa1038070:intron | 35.0% | |
| ATGATCATTGGAATCTACTC+TGG | + | chr7_1:74879826-74879845 | None:intergenic | 35.0% | |
| TATCATGTTGTGAGAGTCAT+AGG | - | chr7_1:74879861-74879880 | Msa1038070:CDS | 35.0% | |
| !! | GGAAATAGCTTTAGGCATGA+GGG | + | chr7_1:74877454-74877473 | None:intergenic | 40.0% |
| !! | TGGAAATAGCTTTAGGCATG+AGG | + | chr7_1:74877455-74877474 | None:intergenic | 40.0% |
| TCTCTGACGAAGATTTCACA+AGG | - | chr7_1:74877484-74877503 | Msa1038070:CDS | 40.0% | |
| CTCTGACGAAGATTTCACAA+GGG | - | chr7_1:74877485-74877504 | Msa1038070:CDS | 40.0% | |
| TACAACACAAACAGTCAAGG+AGG | + | chr7_1:74878459-74878478 | None:intergenic | 40.0% | |
| ATGCATTACCTCCATAAGCT+CGG | + | chr7_1:74878569-74878588 | None:intergenic | 40.0% | |
| ! | ACATGACTTGGATGGGATTT+AGG | - | chr7_1:74878694-74878713 | Msa1038070:CDS | 40.0% |
| ! | CATGACTTGGATGGGATTTA+GGG | - | chr7_1:74878695-74878714 | Msa1038070:CDS | 40.0% |
| GTATGCATAAGCCGAACAAA+CGG | - | chr7_1:74879256-74879275 | Msa1038070:intron | 40.0% | |
| TATAGTTCAGGGGAATTCGT+TGG | - | chr7_1:74879285-74879304 | Msa1038070:intron | 40.0% | |
| TTTACATCCCTTCGCATCAT+TGG | + | chr7_1:74879369-74879388 | None:intergenic | 40.0% | |
| GCAATGTGAAACTTGAGTAG+GGG | + | chr7_1:74879519-74879538 | None:intergenic | 40.0% | |
| CGCAATGTGAAACTTGAGTA+GGG | + | chr7_1:74879520-74879539 | None:intergenic | 40.0% | |
| CCTACTCAAGTTTCACATTG+CGG | - | chr7_1:74879518-74879537 | Msa1038070:intron | 40.0% | |
| GTTTCACATTGCGGAAAGAT+CGG | - | chr7_1:74879527-74879546 | Msa1038070:intron | 40.0% | |
| !!! | CCGTCGAACAATTTTGGTTT+TGG | + | chr7_1:74879581-74879600 | None:intergenic | 40.0% |
| ! | TGTTGTCCGTCGAACAATTT+TGG | + | chr7_1:74879587-74879606 | None:intergenic | 40.0% |
| GGTGATACGTGTATAAAACC+TGG | - | chr7_1:74879678-74879697 | Msa1038070:intron | 40.0% | |
| TATCTACCTAAAGCGAAGCT+TGG | - | chr7_1:74879737-74879756 | Msa1038070:intron | 40.0% | |
| !!! | TCTTTTTTCCCTGCTGGCAT+TGG | - | chr7_1:74877704-74877723 | Msa1038070:CDS | 45.0% |
| GAAGGAGGATCTTCAAGAGA+AGG | - | chr7_1:74877726-74877745 | Msa1038070:CDS | 45.0% | |
| TGCATTACCTCCATAAGCTC+GGG | + | chr7_1:74878568-74878587 | None:intergenic | 45.0% | |
| CACTTACCTCATCTGAGTCA+TGG | + | chr7_1:74878633-74878652 | None:intergenic | 45.0% | |
| ATAAGCCGAACAAACGGAAG+CGG | - | chr7_1:74879262-74879281 | Msa1038070:intron | 45.0% | |
| CTATACCGCTTCCGTTTGTT+CGG | + | chr7_1:74879270-74879289 | None:intergenic | 45.0% | |
| AAACGGAAGCGGTATAGTTC+AGG | - | chr7_1:74879273-74879292 | Msa1038070:intron | 45.0% | |
| AACGGAAGCGGTATAGTTCA+GGG | - | chr7_1:74879274-74879293 | Msa1038070:intron | 45.0% | |
| TTCAGGGGAATTCGTTGGAT+GGG | - | chr7_1:74879290-74879309 | Msa1038070:intron | 45.0% | |
| ! | TCTAGCTTCCTGGCATCTAT+AGG | - | chr7_1:74879327-74879346 | Msa1038070:intron | 45.0% |
| CTAGCTTCCTGGCATCTATA+GGG | - | chr7_1:74879328-74879347 | Msa1038070:intron | 45.0% | |
| CATATCTCCCTATAGATGCC+AGG | + | chr7_1:74879338-74879357 | None:intergenic | 45.0% | |
| AAACCGAACCAATGATGCGA+AGG | - | chr7_1:74879358-74879377 | Msa1038070:intron | 45.0% | |
| AACCGAACCAATGATGCGAA+GGG | - | chr7_1:74879359-74879378 | Msa1038070:intron | 45.0% | |
| ! | ATCCCTTCGCATCATTGGTT+CGG | + | chr7_1:74879364-74879383 | None:intergenic | 45.0% |
| CCGCAATGTGAAACTTGAGT+AGG | + | chr7_1:74879521-74879540 | None:intergenic | 45.0% | |
| TGCGGAAAGATCGGTTGATT+CGG | - | chr7_1:74879536-74879555 | Msa1038070:intron | 45.0% | |
| ACCTTACTCGCAAAGCTTTC+AGG | + | chr7_1:74879783-74879802 | None:intergenic | 45.0% | |
| TGAAAGCTTTGCGAGTAAGG+TGG | - | chr7_1:74879782-74879801 | Msa1038070:intron | 45.0% | |
| TTCGTCAGAGAGCTCAGAGA+TGG | + | chr7_1:74877475-74877494 | None:intergenic | 50.0% | |
| !! | TTTTCCCTGCTGGCATTGGA+AGG | - | chr7_1:74877708-74877727 | Msa1038070:CDS | 50.0% |
| GAAGGCTACAAGTCTTCACG+AGG | - | chr7_1:74877744-74877763 | Msa1038070:CDS | 50.0% | |
| CTACACACATGTATGGGTCG+CGG | + | chr7_1:74878355-74878374 | None:intergenic | 50.0% | |
| ATAAGCTCGGGGGAAACTGA+TGG | + | chr7_1:74878556-74878575 | None:intergenic | 50.0% | |
| ATCAGTTTCCCCCGAGCTTA+TGG | - | chr7_1:74878555-74878574 | Msa1038070:intron | 50.0% | |
| CATTACCTCCATAAGCTCGG+GGG | + | chr7_1:74878566-74878585 | None:intergenic | 50.0% | |
| GCATTACCTCCATAAGCTCG+GGG | + | chr7_1:74878567-74878586 | None:intergenic | 50.0% | |
| AAGTGGGGAAACAGATAGCC+AGG | - | chr7_1:74878606-74878625 | Msa1038070:intron | 50.0% | |
| TTTCTTCTTCGCCTTCGCTG+TGG | + | chr7_1:74879200-74879219 | None:intergenic | 50.0% | |
| ACGGAAGCGGTATAGTTCAG+GGG | - | chr7_1:74879275-74879294 | Msa1038070:intron | 50.0% | |
| GTTCAGGGGAATTCGTTGGA+TGG | - | chr7_1:74879289-74879308 | Msa1038070:intron | 50.0% | |
| GAATTCGTTGGATGGGCATC+AGG | - | chr7_1:74879297-74879316 | Msa1038070:intron | 50.0% | |
| !! | GAAAGATCGGTTGATTCGGC+TGG | - | chr7_1:74879540-74879559 | Msa1038070:intron | 50.0% |
| !! | ATCGGTTGATTCGGCTGGAA+AGG | - | chr7_1:74879545-74879564 | Msa1038070:CDS | 50.0% |
| CGAACACCAAGCTTCGCTTT+AGG | + | chr7_1:74879746-74879765 | None:intergenic | 50.0% | |
| GCCTGAAAGCTTTGCGAGTA+AGG | - | chr7_1:74879779-74879798 | Msa1038070:intron | 50.0% | |
| AGCTTTGCGAGTAAGGTGGT+TGG | - | chr7_1:74879786-74879805 | Msa1038070:intron | 50.0% | |
| TCCTCCTTCCAATGCCAGCA+GGG | + | chr7_1:74877715-74877734 | None:intergenic | 55.0% | |
| ATCCTCCTTCCAATGCCAGC+AGG | + | chr7_1:74877716-74877735 | None:intergenic | 55.0% | |
| AGTTTCCCCCGAGCTTATGG+AGG | - | chr7_1:74878558-74878577 | Msa1038070:intron | 55.0% | |
| CCTCATCTGAGTCATGGTCC+TGG | + | chr7_1:74878627-74878646 | None:intergenic | 55.0% | |
| CCAGGACCATGACTCAGATG+AGG | - | chr7_1:74878624-74878643 | Msa1038070:intron | 55.0% | |
| CGTCATACAAGCCACAGCGA+AGG | - | chr7_1:74879186-74879205 | Msa1038070:intron | 55.0% | |
| ! | AGGACCTCTCTCTAGCTTCC+TGG | - | chr7_1:74879317-74879336 | Msa1038070:intron | 55.0% |
| GATGCCAGGAAGCTAGAGAG+AGG | + | chr7_1:74879324-74879343 | None:intergenic | 55.0% | |
| ! | TCCCTGCTGGCATTGGAAGG+AGG | - | chr7_1:74877711-74877730 | Msa1038070:CDS | 60.0% |
| GCGCGTCGCAATCCACTAGC+AGG | + | chr7_1:74878194-74878213 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 74877423 | 74879902 | 74877423 | ID=Msa1038070;Name=Msa1038070 |
| chr7_1 | mRNA | 74877423 | 74879902 | 74877423 | ID=Msa1038070-mRNA-1;Parent=Msa1038070;Name=Msa1038070-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.6|0.16|0.83|0.4|0.5|6|0|412 |
| chr7_1 | exon | 74879813 | 74879902 | 74879813 | ID=Msa1038070-mRNA-1:exon:18950;Parent=Msa1038070-mRNA-1 |
| chr7_1 | exon | 74879686 | 74879745 | 74879686 | ID=Msa1038070-mRNA-1:exon:18949;Parent=Msa1038070-mRNA-1 |
| chr7_1 | exon | 74879545 | 74879595 | 74879545 | ID=Msa1038070-mRNA-1:exon:18948;Parent=Msa1038070-mRNA-1 |
| chr7_1 | exon | 74879082 | 74879126 | 74879082 | ID=Msa1038070-mRNA-1:exon:18947;Parent=Msa1038070-mRNA-1 |
| chr7_1 | exon | 74878680 | 74878814 | 74878680 | ID=Msa1038070-mRNA-1:exon:18946;Parent=Msa1038070-mRNA-1 |
| chr7_1 | exon | 74877423 | 74878280 | 74877423 | ID=Msa1038070-mRNA-1:exon:18945;Parent=Msa1038070-mRNA-1 |
| chr7_1 | CDS | 74879813 | 74879902 | 74879813 | ID=Msa1038070-mRNA-1:cds;Parent=Msa1038070-mRNA-1 |
| chr7_1 | CDS | 74879686 | 74879745 | 74879686 | ID=Msa1038070-mRNA-1:cds;Parent=Msa1038070-mRNA-1 |
| chr7_1 | CDS | 74879545 | 74879595 | 74879545 | ID=Msa1038070-mRNA-1:cds;Parent=Msa1038070-mRNA-1 |
| chr7_1 | CDS | 74879082 | 74879126 | 74879082 | ID=Msa1038070-mRNA-1:cds;Parent=Msa1038070-mRNA-1 |
| chr7_1 | CDS | 74878680 | 74878814 | 74878680 | ID=Msa1038070-mRNA-1:cds;Parent=Msa1038070-mRNA-1 |
| chr7_1 | CDS | 74877423 | 74878280 | 74877423 | ID=Msa1038070-mRNA-1:cds;Parent=Msa1038070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
