Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446770 | sp|Q9FT92|Y5843_ARATH | 33.486 | 218 | 125 | 4 | 192 | 408 | 10 | 208 | 6.78e-25 | 110 |
| Msa1446770 | sp|Q9FT92|Y5843_ARATH | 35.897 | 117 | 54 | 2 | 2 | 99 | 214 | 328 | 4.08e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446770 | A0A396HCD7 | 80.000 | 50 | 8 | 1 | 1 | 50 | 272 | 319 | 2.31e-13 | 81.6 |
| Msa1446770 | A0A396HCD7 | 92.910 | 268 | 17 | 1 | 141 | 408 | 2 | 267 | 0.0 | 516 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1446770 | TR | SWI/SNF-BAF60b |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1038070 | Msa1446770 | 0.904860 | 7.885246e-80 | -8.615850e-47 |
| Msa1129700 | Msa1446770 | 0.868024 | 8.876997e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446770 | MtrunA17_Chr7g0274571 | 92.910 | 268 | 17 | 1 | 141 | 408 | 2 | 267 | 0.0 | 516 |
| Msa1446770 | MtrunA17_Chr7g0274571 | 80.000 | 50 | 8 | 1 | 1 | 50 | 272 | 319 | 4.44e-17 | 81.6 |
| Msa1446770 | MtrunA17_Chr7g0274561 | 68.772 | 285 | 79 | 3 | 125 | 408 | 24 | 299 | 1.80e-132 | 387 |
| Msa1446770 | MtrunA17_Chr7g0274561 | 64.948 | 97 | 2 | 2 | 1 | 67 | 304 | 398 | 2.43e-25 | 107 |
| Msa1446770 | MtrunA17_Chr6g0477441 | 35.821 | 201 | 115 | 3 | 212 | 408 | 35 | 225 | 7.76e-30 | 118 |
| Msa1446770 | MtrunA17_Chr6g0477441 | 52.564 | 78 | 35 | 1 | 5 | 82 | 235 | 310 | 4.15e-15 | 76.3 |
| Msa1446770 | MtrunA17_Chr3g0109611 | 30.868 | 311 | 181 | 8 | 122 | 408 | 117 | 417 | 1.49e-28 | 117 |
| Msa1446770 | MtrunA17_Chr3g0109611 | 45.783 | 83 | 39 | 1 | 5 | 81 | 430 | 512 | 2.62e-15 | 77.8 |
| Msa1446770 | MtrunA17_Chr3g0109631 | 30.696 | 316 | 175 | 7 | 122 | 408 | 117 | 417 | 7.30e-28 | 114 |
| Msa1446770 | MtrunA17_Chr3g0109591 | 28.939 | 311 | 188 | 5 | 122 | 407 | 117 | 419 | 3.54e-24 | 103 |
| Msa1446770 | MtrunA17_Chr3g0109641 | 29.560 | 318 | 177 | 9 | 122 | 409 | 117 | 417 | 3.05e-22 | 99.4 |
| Msa1446770 | MtrunA17_Chr3g0109641 | 38.732 | 142 | 60 | 4 | 1 | 119 | 482 | 619 | 2.45e-16 | 81.3 |
| Msa1446770 | MtrunA17_Chr5g0405071 | 28.146 | 302 | 180 | 9 | 130 | 407 | 207 | 495 | 2.49e-17 | 84.0 |
| Msa1446770 | MtrunA17_Chr3g0109661 | 53.125 | 64 | 30 | 0 | 345 | 408 | 38 | 101 | 2.50e-15 | 73.6 |
| Msa1446770 | MtrunA17_Chr3g0109581 | 39.744 | 78 | 45 | 1 | 5 | 82 | 64 | 139 | 8.36e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446770 | AT5G63700.1 | 29.310 | 348 | 176 | 7 | 121 | 410 | 123 | 458 | 1.65e-29 | 120 |
| Msa1446770 | AT5G63700.1 | 38.710 | 124 | 55 | 2 | 2 | 106 | 463 | 584 | 3.01e-16 | 81.3 |
| Msa1446770 | AT5G63700.2 | 29.630 | 351 | 171 | 8 | 121 | 410 | 123 | 458 | 2.73e-29 | 119 |
| Msa1446770 | AT5G08430.2 | 33.486 | 218 | 125 | 4 | 192 | 408 | 10 | 208 | 4.64e-26 | 109 |
| Msa1446770 | AT5G08430.2 | 35.433 | 127 | 59 | 3 | 2 | 109 | 214 | 336 | 2.56e-13 | 71.6 |
| Msa1446770 | AT5G08430.1 | 33.486 | 218 | 125 | 4 | 192 | 408 | 10 | 208 | 6.89e-26 | 110 |
| Msa1446770 | AT5G08430.1 | 35.897 | 117 | 54 | 2 | 2 | 99 | 214 | 328 | 4.15e-13 | 71.2 |
| Msa1446770 | AT5G23480.1 | 33.184 | 223 | 121 | 7 | 191 | 408 | 3 | 202 | 1.08e-18 | 87.8 |
| Msa1446770 | AT5G23480.3 | 33.184 | 223 | 121 | 7 | 191 | 408 | 3 | 202 | 1.25e-18 | 87.8 |
| Msa1446770 | AT5G23480.3 | 48.718 | 78 | 35 | 2 | 3 | 77 | 209 | 284 | 6.69e-14 | 73.6 |
| Msa1446770 | AT5G23480.2 | 33.184 | 223 | 121 | 7 | 191 | 408 | 3 | 202 | 1.25e-18 | 87.8 |
| Msa1446770 | AT5G23480.2 | 48.718 | 78 | 35 | 2 | 3 | 77 | 209 | 284 | 6.69e-14 | 73.6 |
| Msa1446770 | AT5G23480.5 | 33.184 | 223 | 121 | 7 | 191 | 408 | 3 | 202 | 1.25e-18 | 87.8 |
| Msa1446770 | AT5G23480.5 | 48.718 | 78 | 35 | 2 | 3 | 77 | 209 | 284 | 6.69e-14 | 73.6 |
| Msa1446770 | AT5G23480.4 | 33.184 | 223 | 121 | 7 | 191 | 408 | 3 | 202 | 1.25e-18 | 87.8 |
| Msa1446770 | AT5G23480.4 | 48.718 | 78 | 35 | 2 | 3 | 77 | 209 | 284 | 6.69e-14 | 73.6 |
| Msa1446770 | AT5G23480.6 | 33.184 | 223 | 121 | 7 | 191 | 408 | 3 | 202 | 1.25e-18 | 87.8 |
| Msa1446770 | AT5G23480.6 | 48.718 | 78 | 35 | 2 | 3 | 77 | 209 | 284 | 6.69e-14 | 73.6 |
Find 87 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTACAACAGTTAATTT+TGG | 0.146059 | tig0031493:+12017 | None:intergenic |
| TGTTGTCCGTCGAACAATTT+TGG | 0.226288 | tig0031493:+10059 | None:intergenic |
| AGCAAGATTGTGAGGATTTA+CGG | 0.274046 | tig0031493:-12064 | Msa1446770:CDS |
| ACCTTACTCGCAAAGCTTTC+AGG | 0.287933 | tig0031493:+9863 | None:intergenic |
| TGCACTTCCCAACAAAATAA+AGG | 0.317725 | tig0031493:-10494 | Msa1446770:CDS |
| ATTCCTTAGCTTATGATCAT+TGG | 0.326667 | tig0031493:+9808 | None:intergenic |
| CTATACCGCTTCCGTTTGTT+CGG | 0.331205 | tig0031493:+10376 | None:intergenic |
| AATTACTCCAATGGAAATAA+AGG | 0.340270 | tig0031493:-10418 | Msa1446770:CDS |
| TCTAGCTTCCTGGCATCTAT+AGG | 0.360380 | tig0031493:-10316 | Msa1446770:CDS |
| TTTACATCCCTTCGCATCAT+TGG | 0.377241 | tig0031493:+10277 | None:intergenic |
| CGAACACCAAGCTTCGCTTT+AGG | 0.380474 | tig0031493:+9900 | None:intergenic |
| GCCTGAAAGCTTTGCGAGTA+AGG | 0.381269 | tig0031493:-9864 | Msa1446770:CDS |
| ATCCCTTCGCATCATTGGTT+CGG | 0.392576 | tig0031493:+10282 | None:intergenic |
| AATGGAAATAAAGGTTATTC+AGG | 0.394196 | tig0031493:-10409 | Msa1446770:CDS |
| TGAATAACCTTTATTTCCAT+TGG | 0.397923 | tig0031493:+10411 | None:intergenic |
| ATTCCTTGAATAGACATTCA+TGG | 0.402864 | tig0031493:+10569 | None:intergenic |
| GAATTCGTTGGATGGGCATC+AGG | 0.404245 | tig0031493:-10346 | Msa1446770:CDS |
| TATCATGTTGTGAGAGTCAT+AGG | 0.404713 | tig0031493:-9782 | Msa1446770:CDS |
| AGGACCTCTCTCTAGCTTCC+TGG | 0.410169 | tig0031493:-10326 | Msa1446770:CDS |
| AAACGGAAGCGGTATAGTTC+AGG | 0.411949 | tig0031493:-10370 | Msa1446770:CDS |
| CTAGCTTCCTGGCATCTATA+GGG | 0.417278 | tig0031493:-10315 | Msa1446770:CDS |
| TCTCATGTTTGAATACATTA+CGG | 0.427420 | tig0031493:-10251 | Msa1446770:CDS |
| TGCGGAAAGATCGGTTGATT+CGG | 0.428580 | tig0031493:-10107 | Msa1446770:CDS |
| GAACATGATGAAATGTCTAA+TGG | 0.435204 | tig0031493:-12231 | None:intergenic |
| TCAGAGATGGAAATAGCTTT+AGG | 0.435649 | tig0031493:+12183 | None:intergenic |
| TTTGCAGAACAAAATAAGCT+TGG | 0.441190 | tig0031493:-10605 | Msa1446770:intron |
| ATTGGAAACAACTTATCGTC+AGG | 0.444881 | tig0031493:+10187 | None:intergenic |
| TATCGATGATGAAACATGTA+TGG | 0.454872 | tig0031493:-10032 | Msa1446770:CDS |
| AACCCATGAATGTCTATTCA+AGG | 0.456893 | tig0031493:-10572 | Msa1446770:CDS |
| CGCAATGTGAAACTTGAGTA+GGG | 0.459804 | tig0031493:+10126 | None:intergenic |
| TGCATTACCTCCATAAGCTC+GGG | 0.466909 | tig0031493:+11077 | None:intergenic |
| AACAATTGTTCTAGTTTCTG+TGG | 0.467697 | tig0031493:+11122 | None:intergenic |
| TTCCTTGAATAGACATTCAT+GGG | 0.468587 | tig0031493:+10570 | None:intergenic |
| GCACTTCCCAACAAAATAAA+GGG | 0.474252 | tig0031493:-10493 | Msa1446770:CDS |
| ATGTCTATTCAAGGAATTTG+AGG | 0.475733 | tig0031493:-10563 | Msa1446770:CDS |
| GAAAATGTTGAGGTGAGAAA+AGG | 0.496685 | tig0031493:-10541 | Msa1446770:CDS |
| ATCGGTTGATTCGGCTGGAA+AGG | 0.496714 | tig0031493:-10098 | Msa1446770:CDS |
| AGAAACTAGAACAATTGTTA+AGG | 0.509733 | tig0031493:-11118 | Msa1446770:CDS |
| CAGAACAAAATAAGCTTGGA+TGG | 0.511928 | tig0031493:-10601 | Msa1446770:CDS |
| GTTTCACATTGCGGAAAGAT+CGG | 0.513307 | tig0031493:-10116 | Msa1446770:CDS |
| ATGATCATTGGAATCTACTC+TGG | 0.514132 | tig0031493:+9820 | None:intergenic |
| TTAATCAATGCAAAACATCC+AGG | 0.516424 | tig0031493:+9947 | None:intergenic |
| AATGATTCTGATGAAGAAAG+TGG | 0.517048 | tig0031493:-11053 | Msa1446770:CDS |
| AAGTGGGGAAACAGATAGCC+AGG | 0.518858 | tig0031493:-11036 | Msa1446770:CDS |
| AACGGAAGCGGTATAGTTCA+GGG | 0.521055 | tig0031493:-10369 | Msa1446770:CDS |
| CCGCAATGTGAAACTTGAGT+AGG | 0.524398 | tig0031493:+10125 | None:intergenic |
| GAAAGATCGGTTGATTCGGC+TGG | 0.525189 | tig0031493:-10103 | Msa1446770:CDS |
| TTCAGGGGAATTCGTTGGAT+GGG | 0.525846 | tig0031493:-10353 | Msa1446770:CDS |
| TATAGTTCAGGGGAATTCGT+TGG | 0.533847 | tig0031493:-10358 | Msa1446770:CDS |
| CCTCATCTGAGTCATGGTCC+TGG | 0.538187 | tig0031493:+11018 | None:intergenic |
| ATGCATTACCTCCATAAGCT+CGG | 0.545799 | tig0031493:+11076 | None:intergenic |
| GGAATTTGAGGAAAATGTTG+AGG | 0.552644 | tig0031493:-10551 | Msa1446770:CDS |
| CATATCTCCCTATAGATGCC+AGG | 0.553627 | tig0031493:+10308 | None:intergenic |
| GTATGCATAAGCCGAACAAA+CGG | 0.559115 | tig0031493:-10387 | Msa1446770:CDS |
| ATGATTCTGATGAAGAAAGT+GGG | 0.561773 | tig0031493:-11052 | Msa1446770:CDS |
| TTCGTCAGAGAGCTCAGAGA+TGG | 0.562351 | tig0031493:+12170 | None:intergenic |
| AGCTTTGCGAGTAAGGTGGT+TGG | 0.565903 | tig0031493:-9857 | Msa1446770:CDS |
| TGGAAATAGCTTTAGGCATG+AGG | 0.567111 | tig0031493:+12190 | None:intergenic |
| GTTCAGGGGAATTCGTTGGA+TGG | 0.572914 | tig0031493:-10354 | Msa1446770:CDS |
| GGTGATACGTGTATAAAACC+TGG | 0.573802 | tig0031493:-9965 | Msa1446770:CDS |
| TTTGAATCTGCAAGTAGACT+AGG | 0.579224 | tig0031493:+11429 | None:intergenic |
| CGTCATACAAGCCACGGCGA+AGG | 0.580146 | tig0031493:-10457 | Msa1446770:CDS |
| AAACCGAACCAATGATGCGA+AGG | 0.581525 | tig0031493:-10285 | Msa1446770:CDS |
| ATTCCAATGATCATAAGCTA+AGG | 0.583714 | tig0031493:-9811 | Msa1446770:CDS |
| TATCTACCTAAAGCGAAGCT+TGG | 0.591743 | tig0031493:-9906 | Msa1446770:CDS |
| GGAAATAGCTTTAGGCATGA+GGG | 0.596323 | tig0031493:+12191 | None:intergenic |
| CACTTACCTCATCTGAGTCA+TGG | 0.599815 | tig0031493:+11012 | None:intergenic |
| GAAGGAGGATCTTCAAGAGA+AGG | 0.601055 | tig0031493:-11916 | Msa1446770:intron |
| TTACTTACAGCAAGATTGTG+AGG | 0.605927 | tig0031493:-12072 | Msa1446770:intron |
| TTGGAAACAACTTATCGTCA+GGG | 0.616900 | tig0031493:+10188 | None:intergenic |
| TTTGAGCGTCATACAAGCCA+CGG | 0.617653 | tig0031493:-10463 | Msa1446770:CDS |
| TGAAAGCTTTGCGAGTAAGG+TGG | 0.622790 | tig0031493:-9861 | Msa1446770:CDS |
| TGATTCTGATGAAGAAAGTG+GGG | 0.623371 | tig0031493:-11051 | Msa1446770:CDS |
| GCATTACCTCCATAAGCTCG+GGG | 0.625307 | tig0031493:+11078 | None:intergenic |
| ATAAGCCGAACAAACGGAAG+CGG | 0.632102 | tig0031493:-10381 | Msa1446770:CDS |
| TTTCTTCTTCGCCTTCGCCG+TGG | 0.634005 | tig0031493:+10446 | None:intergenic |
| AACCGAACCAATGATGCGAA+GGG | 0.642463 | tig0031493:-10284 | Msa1446770:CDS |
| CCAAAACCAAAATTGTTCGA+CGG | 0.647694 | tig0031493:-10065 | Msa1446770:CDS |
| CCTACTCAAGTTTCACATTG+CGG | 0.649142 | tig0031493:-10125 | Msa1446770:CDS |
| ACGGAAGCGGTATAGTTCAG+GGG | 0.673905 | tig0031493:-10368 | Msa1446770:CDS |
| GCAATGTGAAACTTGAGTAG+GGG | 0.678921 | tig0031493:+10127 | None:intergenic |
| CCAGGACCATGACTCAGATG+AGG | 0.678929 | tig0031493:-11018 | Msa1446770:intron |
| GATGCCAGGAAGCTAGAGAG+AGG | 0.686776 | tig0031493:+10322 | None:intergenic |
| TCTCTGACGAAGATTTCACA+AGG | 0.687797 | tig0031493:-12158 | Msa1446770:CDS |
| CATTACCTCCATAAGCTCGG+GGG | 0.731541 | tig0031493:+11079 | None:intergenic |
| CTCTGACGAAGATTTCACAA+GGG | 0.735001 | tig0031493:-12157 | Msa1446770:CDS |
| GAAGGCTACAAGTCTTCACG+AGG | 0.740812 | tig0031493:-11898 | Msa1446770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTGTTATTCTAATAAA+AGG | + | tig0031493:10279-10298 | None:intergenic | 10.0% |
| !!! | TGAATTTTATTATATGTCTA+AGG | + | tig0031493:10339-10358 | None:intergenic | 15.0% |
| !! | AGATTAACAAATTTATAAAG+TGG | + | tig0031493:10472-10491 | None:intergenic | 15.0% |
| !! | ACATTATCTAAGAATAAATT+TGG | + | tig0031493:11094-11113 | None:intergenic | 15.0% |
| !! | CAGTGAAAATATTATTATCA+TGG | - | tig0031493:9865-9884 | Msa1446770:CDS | 20.0% |
| !!! | AACTTACAACAGTTAATTTT+GGG | + | tig0031493:9967-9986 | None:intergenic | 20.0% |
| !!! | ATGTAATCTGTGATTATTTT+TGG | - | tig0031493:10435-10454 | Msa1446770:CDS | 20.0% |
| !!! | CATATTTTTTTTCTTAAGTC+TGG | - | tig0031493:10756-10775 | Msa1446770:intron | 20.0% |
| !! | AAATTGCATTACTAAATGAA+AGG | - | tig0031493:10822-10841 | Msa1446770:intron | 20.0% |
| !! | AATTGCATTACTAAATGAAA+GGG | - | tig0031493:10823-10842 | Msa1446770:intron | 20.0% |
| !! | TAAGTGTATTTAATTGAAGA+TGG | - | tig0031493:10987-11006 | Msa1446770:intron | 20.0% |
| !! | ATAGATTGTAGAACAAAATT+TGG | - | tig0031493:11011-11030 | Msa1446770:intron | 20.0% |
| !!! | ACATTTGTTTTTTACTTCAA+AGG | - | tig0031493:11153-11172 | Msa1446770:intron | 20.0% |
| !! | TCAAAATGATATATTGTGTT+TGG | + | tig0031493:11305-11324 | None:intergenic | 20.0% |
| !!! | TTTTTAACAAAAGACGATAA+AGG | + | tig0031493:11340-11359 | None:intergenic | 20.0% |
| !!! | ATGACTTTCTTTTTAAAGAT+TGG | + | tig0031493:11816-11835 | None:intergenic | 20.0% |
| !! | CAACTTACAACAGTTAATTT+TGG | + | tig0031493:9968-9987 | None:intergenic | 25.0% |
| ! | TTCTGATCTATAACAAGTTT+AGG | - | tig0031493:10185-10204 | Msa1446770:CDS | 25.0% |
| !!! | TTTAGGTTAGATGTATGTTT+TGG | - | tig0031493:10202-10221 | Msa1446770:CDS | 25.0% |
| ! | CATTTCTATATGATACAAGA+AGG | + | tig0031493:10602-10621 | None:intergenic | 25.0% |
| ! | AGAAACTAGAACAATTGTTA+AGG | - | tig0031493:10864-10883 | Msa1446770:intron | 25.0% |
| !!! | TCTTTACCCTTTATTTTGTT+GGG | + | tig0031493:11498-11517 | None:intergenic | 25.0% |
| !!! | ATCTTTACCCTTTATTTTGT+TGG | + | tig0031493:11499-11518 | None:intergenic | 25.0% |
| ! | GAAAAACAAAATTACTCCAA+TGG | - | tig0031493:11555-11574 | Msa1446770:intron | 25.0% |
| ! | AATTACTCCAATGGAAATAA+AGG | - | tig0031493:11564-11583 | Msa1446770:intron | 25.0% |
| !! | TGAATAACCTTTATTTCCAT+TGG | + | tig0031493:11574-11593 | None:intergenic | 25.0% |
| ! | AATGGAAATAAAGGTTATTC+AGG | - | tig0031493:11573-11592 | Msa1446770:intron | 25.0% |
| ! | TCTCATGTTTGAATACATTA+CGG | - | tig0031493:11731-11750 | Msa1446770:intron | 25.0% |
| ! | GAAAAACCTTTGTTGAAAAA+AGG | - | tig0031493:11996-12015 | Msa1446770:intron | 25.0% |
| TTACGGAAAAAAGTGAAAAC+TGG | - | tig0031493:9935-9954 | Msa1446770:CDS | 30.0% | |
| CAGAAAAAATTGAACATCAG+TGG | + | tig0031493:10170-10189 | None:intergenic | 30.0% | |
| AAAGGATTGTCTACAGAAAA+TGG | + | tig0031493:10261-10280 | None:intergenic | 30.0% | |
| !!! | GGCTATTTTGTTTTACTCAT+TGG | + | tig0031493:10318-10337 | None:intergenic | 30.0% |
| AGGAACATATTCATAAAGCA+AGG | + | tig0031493:10514-10533 | None:intergenic | 30.0% | |
| !! | ACAAAGACATAATTTGTTGC+GGG | + | tig0031493:10672-10691 | None:intergenic | 30.0% |
| !! | GACAAAGACATAATTTGTTG+CGG | + | tig0031493:10673-10692 | None:intergenic | 30.0% |
| ! | GTTTTACTACACACATGTAT+GGG | + | tig0031493:10701-10720 | None:intergenic | 30.0% |
| TAGTAAAACGTACATGTATC+TGG | - | tig0031493:10712-10731 | Msa1446770:intron | 30.0% | |
| !! | AACAATTGTTCTAGTTTCTG+TGG | + | tig0031493:10863-10882 | None:intergenic | 30.0% |
| AATGATTCTGATGAAGAAAG+TGG | - | tig0031493:10929-10948 | Msa1446770:intron | 30.0% | |
| ATGATTCTGATGAAGAAAGT+GGG | - | tig0031493:10930-10949 | Msa1446770:intron | 30.0% | |
| AACAAAATTTGGACATGACT+TGG | - | tig0031493:11022-11041 | Msa1446770:CDS | 30.0% | |
| TAGGGTTTAGTGTATTTACT+TGG | - | tig0031493:11053-11072 | Msa1446770:CDS | 30.0% | |
| ! | AATGTTTTCATGTTCAGCAA+GGG | + | tig0031493:11138-11157 | None:intergenic | 30.0% |
| ! | AAATGTTTTCATGTTCAGCA+AGG | + | tig0031493:11139-11158 | None:intergenic | 30.0% |
| TTTATCTTAAAATCATGCCC+AGG | - | tig0031493:11265-11284 | Msa1446770:intron | 30.0% | |
| TTTGCAGAACAAAATAAGCT+TGG | - | tig0031493:11377-11396 | Msa1446770:intron | 30.0% | |
| TTCCTTGAATAGACATTCAT+GGG | + | tig0031493:11415-11434 | None:intergenic | 30.0% | |
| ATTCCTTGAATAGACATTCA+TGG | + | tig0031493:11416-11435 | None:intergenic | 30.0% | |
| ATGTCTATTCAAGGAATTTG+AGG | - | tig0031493:11419-11438 | Msa1446770:intron | 30.0% | |
| TATCGATGATGAAACATGTA+TGG | - | tig0031493:11950-11969 | Msa1446770:intron | 30.0% | |
| !!! | GTATCACCTTTTTTCAACAA+AGG | + | tig0031493:12005-12024 | None:intergenic | 30.0% |
| TTAATCAATGCAAAACATCC+AGG | + | tig0031493:12038-12057 | None:intergenic | 30.0% | |
| ATTCCAATGATCATAAGCTA+AGG | - | tig0031493:12171-12190 | Msa1446770:CDS | 30.0% | |
| ATTCCTTAGCTTATGATCAT+TGG | + | tig0031493:12177-12196 | None:intergenic | 30.0% | |
| TCAGAGATGGAAATAGCTTT+AGG | + | tig0031493:9802-9821 | None:intergenic | 35.0% | |
| TTACTTACAGCAAGATTGTG+AGG | - | tig0031493:9910-9929 | Msa1446770:CDS | 35.0% | |
| AGCAAGATTGTGAGGATTTA+CGG | - | tig0031493:9918-9937 | Msa1446770:CDS | 35.0% | |
| TGTAAGTTGCATGATACATG+TGG | - | tig0031493:9979-9998 | Msa1446770:CDS | 35.0% | |
| !!! | TTAACTTCTTTTTTCCCTGC+TGG | - | tig0031493:10038-10057 | Msa1446770:CDS | 35.0% |
| TATGAATATGTTCCTGCTAG+TGG | - | tig0031493:10519-10538 | Msa1446770:CDS | 35.0% | |
| TTTGAATCTGCAAGTAGACT+AGG | + | tig0031493:10556-10575 | None:intergenic | 35.0% | |
| ! | CGTTTTACTACACACATGTA+TGG | + | tig0031493:10702-10721 | None:intergenic | 35.0% |
| TTGTACAACACAAACAGTCA+AGG | + | tig0031493:10802-10821 | None:intergenic | 35.0% | |
| TGATTCTGATGAAGAAAGTG+GGG | - | tig0031493:10931-10950 | Msa1446770:intron | 35.0% | |
| ! | AAATTTGGACATGACTTGGA+TGG | - | tig0031493:11026-11045 | Msa1446770:CDS | 35.0% |
| ! | AATTTGGACATGACTTGGAT+GGG | - | tig0031493:11027-11046 | Msa1446770:CDS | 35.0% |
| ! | GCAAGGGCATAAAACAATTA+TGG | + | tig0031493:11122-11141 | None:intergenic | 35.0% |
| CAGAACAAAATAAGCTTGGA+TGG | - | tig0031493:11381-11400 | Msa1446770:intron | 35.0% | |
| AACCCATGAATGTCTATTCA+AGG | - | tig0031493:11410-11429 | Msa1446770:intron | 35.0% | |
| GGAATTTGAGGAAAATGTTG+AGG | - | tig0031493:11431-11450 | Msa1446770:CDS | 35.0% | |
| GAAAATGTTGAGGTGAGAAA+AGG | - | tig0031493:11441-11460 | Msa1446770:CDS | 35.0% | |
| TGCACTTCCCAACAAAATAA+AGG | - | tig0031493:11488-11507 | Msa1446770:intron | 35.0% | |
| GCACTTCCCAACAAAATAAA+GGG | - | tig0031493:11489-11508 | Msa1446770:intron | 35.0% | |
| TTGGAAACAACTTATCGTCA+GGG | + | tig0031493:11797-11816 | None:intergenic | 35.0% | |
| ATTGGAAACAACTTATCGTC+AGG | + | tig0031493:11798-11817 | None:intergenic | 35.0% | |
| CCAAAACCAAAATTGTTCGA+CGG | - | tig0031493:11917-11936 | Msa1446770:intron | 35.0% | |
| ATGATCATTGGAATCTACTC+TGG | + | tig0031493:12165-12184 | None:intergenic | 35.0% | |
| TATCATGTTGTGAGAGTCAT+AGG | - | tig0031493:12200-12219 | Msa1446770:CDS | 35.0% | |
| !! | GGAAATAGCTTTAGGCATGA+GGG | + | tig0031493:9794-9813 | None:intergenic | 40.0% |
| !! | TGGAAATAGCTTTAGGCATG+AGG | + | tig0031493:9795-9814 | None:intergenic | 40.0% |
| TCTCTGACGAAGATTTCACA+AGG | - | tig0031493:9824-9843 | Msa1446770:CDS | 40.0% | |
| CTCTGACGAAGATTTCACAA+GGG | - | tig0031493:9825-9844 | Msa1446770:CDS | 40.0% | |
| TACAACACAAACAGTCAAGG+AGG | + | tig0031493:10799-10818 | None:intergenic | 40.0% | |
| ATGCATTACCTCCATAAGCT+CGG | + | tig0031493:10909-10928 | None:intergenic | 40.0% | |
| ! | ACATGACTTGGATGGGATTT+AGG | - | tig0031493:11034-11053 | Msa1446770:CDS | 40.0% |
| ! | CATGACTTGGATGGGATTTA+GGG | - | tig0031493:11035-11054 | Msa1446770:CDS | 40.0% |
| TGGATATTGCATATCTGCCT+GGG | + | tig0031493:11285-11304 | None:intergenic | 40.0% | |
| TTGGATATTGCATATCTGCC+TGG | + | tig0031493:11286-11305 | None:intergenic | 40.0% | |
| GTATGCATAAGCCGAACAAA+CGG | - | tig0031493:11595-11614 | Msa1446770:intron | 40.0% | |
| TATAGTTCAGGGGAATTCGT+TGG | - | tig0031493:11624-11643 | Msa1446770:intron | 40.0% | |
| TTTACATCCCTTCGCATCAT+TGG | + | tig0031493:11708-11727 | None:intergenic | 40.0% | |
| GCAATGTGAAACTTGAGTAG+GGG | + | tig0031493:11858-11877 | None:intergenic | 40.0% | |
| CGCAATGTGAAACTTGAGTA+GGG | + | tig0031493:11859-11878 | None:intergenic | 40.0% | |
| CCTACTCAAGTTTCACATTG+CGG | - | tig0031493:11857-11876 | Msa1446770:intron | 40.0% | |
| GTTTCACATTGCGGAAAGAT+CGG | - | tig0031493:11866-11885 | Msa1446770:intron | 40.0% | |
| !!! | CCGTCGAACAATTTTGGTTT+TGG | + | tig0031493:11920-11939 | None:intergenic | 40.0% |
| ! | TGTTGTCCGTCGAACAATTT+TGG | + | tig0031493:11926-11945 | None:intergenic | 40.0% |
| GGTGATACGTGTATAAAACC+TGG | - | tig0031493:12017-12036 | Msa1446770:intron | 40.0% | |
| TATCTACCTAAAGCGAAGCT+TGG | - | tig0031493:12076-12095 | Msa1446770:intron | 40.0% | |
| !!! | TCTTTTTTCCCTGCTGGCAT+TGG | - | tig0031493:10044-10063 | Msa1446770:CDS | 45.0% |
| GAAGGAGGATCTTCAAGAGA+AGG | - | tig0031493:10066-10085 | Msa1446770:CDS | 45.0% | |
| TGCATTACCTCCATAAGCTC+GGG | + | tig0031493:10908-10927 | None:intergenic | 45.0% | |
| CACTTACCTCATCTGAGTCA+TGG | + | tig0031493:10973-10992 | None:intergenic | 45.0% | |
| TTTGAGCGTCATACAAGCCA+CGG | - | tig0031493:11519-11538 | Msa1446770:intron | 45.0% | |
| ATAAGCCGAACAAACGGAAG+CGG | - | tig0031493:11601-11620 | Msa1446770:intron | 45.0% | |
| CTATACCGCTTCCGTTTGTT+CGG | + | tig0031493:11609-11628 | None:intergenic | 45.0% | |
| AAACGGAAGCGGTATAGTTC+AGG | - | tig0031493:11612-11631 | Msa1446770:intron | 45.0% | |
| AACGGAAGCGGTATAGTTCA+GGG | - | tig0031493:11613-11632 | Msa1446770:intron | 45.0% | |
| TTCAGGGGAATTCGTTGGAT+GGG | - | tig0031493:11629-11648 | Msa1446770:intron | 45.0% | |
| ! | TCTAGCTTCCTGGCATCTAT+AGG | - | tig0031493:11666-11685 | Msa1446770:intron | 45.0% |
| CTAGCTTCCTGGCATCTATA+GGG | - | tig0031493:11667-11686 | Msa1446770:intron | 45.0% | |
| CATATCTCCCTATAGATGCC+AGG | + | tig0031493:11677-11696 | None:intergenic | 45.0% | |
| AAACCGAACCAATGATGCGA+AGG | - | tig0031493:11697-11716 | Msa1446770:intron | 45.0% | |
| AACCGAACCAATGATGCGAA+GGG | - | tig0031493:11698-11717 | Msa1446770:intron | 45.0% | |
| ! | ATCCCTTCGCATCATTGGTT+CGG | + | tig0031493:11703-11722 | None:intergenic | 45.0% |
| CCGCAATGTGAAACTTGAGT+AGG | + | tig0031493:11860-11879 | None:intergenic | 45.0% | |
| TGCGGAAAGATCGGTTGATT+CGG | - | tig0031493:11875-11894 | Msa1446770:intron | 45.0% | |
| ACCTTACTCGCAAAGCTTTC+AGG | + | tig0031493:12122-12141 | None:intergenic | 45.0% | |
| TGAAAGCTTTGCGAGTAAGG+TGG | - | tig0031493:12121-12140 | Msa1446770:intron | 45.0% | |
| TTCGTCAGAGAGCTCAGAGA+TGG | + | tig0031493:9815-9834 | None:intergenic | 50.0% | |
| !! | TTTTCCCTGCTGGCATTGGA+AGG | - | tig0031493:10048-10067 | Msa1446770:CDS | 50.0% |
| GAAGGCTACAAGTCTTCACG+AGG | - | tig0031493:10084-10103 | Msa1446770:CDS | 50.0% | |
| CTACACACATGTATGGGTCG+CGG | + | tig0031493:10695-10714 | None:intergenic | 50.0% | |
| ATAAGCTCGGGGGAAACTGA+TGG | + | tig0031493:10896-10915 | None:intergenic | 50.0% | |
| ATCAGTTTCCCCCGAGCTTA+TGG | - | tig0031493:10895-10914 | Msa1446770:intron | 50.0% | |
| CATTACCTCCATAAGCTCGG+GGG | + | tig0031493:10906-10925 | None:intergenic | 50.0% | |
| GCATTACCTCCATAAGCTCG+GGG | + | tig0031493:10907-10926 | None:intergenic | 50.0% | |
| AAGTGGGGAAACAGATAGCC+AGG | - | tig0031493:10946-10965 | Msa1446770:intron | 50.0% | |
| ACGGAAGCGGTATAGTTCAG+GGG | - | tig0031493:11614-11633 | Msa1446770:intron | 50.0% | |
| GTTCAGGGGAATTCGTTGGA+TGG | - | tig0031493:11628-11647 | Msa1446770:intron | 50.0% | |
| GAATTCGTTGGATGGGCATC+AGG | - | tig0031493:11636-11655 | Msa1446770:intron | 50.0% | |
| !! | GAAAGATCGGTTGATTCGGC+TGG | - | tig0031493:11879-11898 | Msa1446770:intron | 50.0% |
| !! | ATCGGTTGATTCGGCTGGAA+AGG | - | tig0031493:11884-11903 | Msa1446770:CDS | 50.0% |
| CGAACACCAAGCTTCGCTTT+AGG | + | tig0031493:12085-12104 | None:intergenic | 50.0% | |
| GCCTGAAAGCTTTGCGAGTA+AGG | - | tig0031493:12118-12137 | Msa1446770:intron | 50.0% | |
| AGCTTTGCGAGTAAGGTGGT+TGG | - | tig0031493:12125-12144 | Msa1446770:intron | 50.0% | |
| TCCTCCTTCCAATGCCAGCA+GGG | + | tig0031493:10055-10074 | None:intergenic | 55.0% | |
| ATCCTCCTTCCAATGCCAGC+AGG | + | tig0031493:10056-10075 | None:intergenic | 55.0% | |
| AGTTTCCCCCGAGCTTATGG+AGG | - | tig0031493:10898-10917 | Msa1446770:intron | 55.0% | |
| CCTCATCTGAGTCATGGTCC+TGG | + | tig0031493:10967-10986 | None:intergenic | 55.0% | |
| CCAGGACCATGACTCAGATG+AGG | - | tig0031493:10964-10983 | Msa1446770:intron | 55.0% | |
| TTTCTTCTTCGCCTTCGCCG+TGG | + | tig0031493:11539-11558 | None:intergenic | 55.0% | |
| ! | AGGACCTCTCTCTAGCTTCC+TGG | - | tig0031493:11656-11675 | Msa1446770:intron | 55.0% |
| GATGCCAGGAAGCTAGAGAG+AGG | + | tig0031493:11663-11682 | None:intergenic | 55.0% | |
| ! | TCCCTGCTGGCATTGGAAGG+AGG | - | tig0031493:10051-10070 | Msa1446770:CDS | 60.0% |
| CGTCATACAAGCCACGGCGA+AGG | - | tig0031493:11525-11544 | Msa1446770:intron | 60.0% | |
| GCGCGTCGCAATCCACTAGC+AGG | + | tig0031493:10534-10553 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031493 | gene | 9763 | 12241 | 9763 | ID=Msa1446770;Name=Msa1446770 |
| tig0031493 | mRNA | 9763 | 12241 | 9763 | ID=Msa1446770-mRNA-1;Parent=Msa1446770;Name=Msa1446770-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.6|0.16|0.83|0.4|0.66|6|0|412 |
| tig0031493 | exon | 12152 | 12241 | 12152 | ID=Msa1446770-mRNA-1:exon:15571;Parent=Msa1446770-mRNA-1 |
| tig0031493 | exon | 12025 | 12084 | 12025 | ID=Msa1446770-mRNA-1:exon:15570;Parent=Msa1446770-mRNA-1 |
| tig0031493 | exon | 11884 | 11934 | 11884 | ID=Msa1446770-mRNA-1:exon:15569;Parent=Msa1446770-mRNA-1 |
| tig0031493 | exon | 11421 | 11465 | 11421 | ID=Msa1446770-mRNA-1:exon:15568;Parent=Msa1446770-mRNA-1 |
| tig0031493 | exon | 11019 | 11153 | 11019 | ID=Msa1446770-mRNA-1:exon:15567;Parent=Msa1446770-mRNA-1 |
| tig0031493 | exon | 9763 | 10620 | 9763 | ID=Msa1446770-mRNA-1:exon:15566;Parent=Msa1446770-mRNA-1 |
| tig0031493 | CDS | 12152 | 12241 | 12152 | ID=Msa1446770-mRNA-1:cds;Parent=Msa1446770-mRNA-1 |
| tig0031493 | CDS | 12025 | 12084 | 12025 | ID=Msa1446770-mRNA-1:cds;Parent=Msa1446770-mRNA-1 |
| tig0031493 | CDS | 11884 | 11934 | 11884 | ID=Msa1446770-mRNA-1:cds;Parent=Msa1446770-mRNA-1 |
| tig0031493 | CDS | 11421 | 11465 | 11421 | ID=Msa1446770-mRNA-1:cds;Parent=Msa1446770-mRNA-1 |
| tig0031493 | CDS | 11019 | 11153 | 11019 | ID=Msa1446770-mRNA-1:cds;Parent=Msa1446770-mRNA-1 |
| tig0031493 | CDS | 9763 | 10620 | 9763 | ID=Msa1446770-mRNA-1:cds;Parent=Msa1446770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
