AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1040060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040060 MtrunA17_Chr7g0271551 95.687 371 5 4 1 366 1 365 0.0 711
Msa1040060 MtrunA17_Chr7g0273101 46.802 344 160 7 37 361 29 368 1.70e-102 307
Msa1040060 MtrunA17_Chr1g0191461 45.455 341 165 8 33 355 28 365 7.79e-96 290
Msa1040060 MtrunA17_Chr8g0381581 43.909 353 166 10 32 359 36 381 1.68e-94 287
Msa1040060 MtrunA17_Chr1g0160101 43.207 368 181 10 23 366 25 388 1.21e-93 285
Msa1040060 MtrunA17_Chr1g0159971 42.105 380 193 9 6 366 21 392 2.39e-92 282
Msa1040060 MtrunA17_Chr7g0254461 40.263 380 197 11 10 366 20 392 2.44e-91 279
Msa1040060 MtrunA17_Chr7g0226941 40.000 370 186 11 23 366 20 379 1.26e-88 271
Msa1040060 MtrunA17_Chr1g0159981 41.667 348 181 8 38 366 47 391 3.79e-86 266
Msa1040060 MtrunA17_Chr1g0159991 41.061 358 188 8 28 366 28 381 1.96e-85 263
Msa1040060 MtrunA17_Chr7g0226931 38.442 398 195 13 9 366 12 399 7.43e-84 260
Msa1040060 MtrunA17_Chr1g0160031 40.896 357 186 9 29 366 32 382 4.42e-83 258
Msa1040060 MtrunA17_Chr6g0450701 41.311 351 188 9 29 365 32 378 5.90e-81 252
Msa1040060 MtrunA17_Chr7g0226911 37.726 387 202 12 9 366 9 385 1.28e-80 251
Msa1040060 MtrunA17_Chr1g0160011 40.608 362 172 10 32 365 36 382 1.58e-80 251
Msa1040060 MtrunA17_Chr6g0450711 42.165 351 185 10 29 365 115 461 1.52e-77 246
Msa1040060 MtrunA17_Chr6g0450721 40.456 351 186 7 25 365 22 359 3.71e-77 241
Msa1040060 MtrunA17_Chr8g0352901 37.875 367 199 10 21 365 13 372 1.38e-75 238
Msa1040060 MtrunA17_Chr7g0275291 40.220 363 187 11 25 365 21 375 6.34e-75 236
Msa1040060 MtrunA17_Chr8g0347751 40.580 345 179 10 38 361 37 376 1.08e-73 233
Msa1040060 MtrunA17_Chr6g0450731 39.726 365 198 11 11 365 9 361 4.54e-70 223
Msa1040060 MtrunA17_Chr8g0339251 37.152 323 178 9 21 330 13 323 2.21e-60 197
Msa1040060 MtrunA17_Chr4g0057991 33.943 383 214 11 7 364 4 372 1.51e-56 189
Msa1040060 MtrunA17_Chr2g0283481 36.096 374 203 13 6 358 23 381 2.42e-56 189
Msa1040060 MtrunA17_Chr2g0283511 32.471 348 190 8 42 359 36 368 3.57e-52 177
Msa1040060 MtrunA17_Chr2g0283531 33.594 384 215 13 6 363 1 370 7.53e-52 176
Msa1040060 MtrunA17_Chr2g0283501 31.667 360 216 10 23 361 19 369 3.53e-51 174
Msa1040060 MtrunA17_Chr2g0301581 30.623 369 211 10 10 359 11 353 3.13e-47 164
Msa1040060 MtrunA17_Chr3g0104821 31.579 342 208 10 38 359 45 380 9.78e-47 163
Msa1040060 MtrunA17_Chr3g0112821 33.529 340 198 14 37 359 30 358 3.34e-46 161
Msa1040060 MtrunA17_Chr3g0093031 32.551 341 205 13 37 359 30 363 1.81e-45 159
Msa1040060 MtrunA17_Chr2g0301541 30.081 369 213 10 10 359 11 353 2.10e-45 159
Msa1040060 MtrunA17_Chr3g0096551 32.626 377 213 15 16 359 6 374 3.80e-44 156
Msa1040060 MtrunA17_Chr3g0112691 31.965 341 205 13 37 359 30 361 1.50e-43 154
Msa1040060 MtrunA17_Chr2g0317271 30.973 339 197 10 39 359 32 351 2.05e-42 151
Msa1040060 MtrunA17_Chr2g0317261 31.268 339 196 11 39 359 32 351 3.31e-42 150
Msa1040060 MtrunA17_Chr0c01g0489581 30.678 339 198 10 39 359 32 351 9.70e-42 149
Msa1040060 MtrunA17_Chr0c01g0489571 30.678 339 198 10 39 359 32 351 1.93e-41 149
Msa1040060 MtrunA17_Chr8g0344941 29.834 362 220 12 6 351 14 357 5.53e-38 140
Msa1040060 MtrunA17_Chr8g0349321 31.250 352 211 13 16 351 12 348 9.69e-37 136
Msa1040060 MtrunA17_Chr2g0294301 30.857 350 206 12 21 351 19 351 1.17e-35 133
Msa1040060 MtrunA17_Chr4g0068441 30.699 329 196 12 39 350 37 350 1.95e-35 133
Msa1040060 MtrunA17_Chr2g0301641 29.714 350 216 11 22 355 29 364 1.12e-34 131
Msa1040060 MtrunA17_Chr8g0349341 30.581 327 202 10 36 351 36 348 2.24e-34 130
Msa1040060 MtrunA17_Chr7g0275001 29.859 355 219 11 20 357 8 349 2.97e-34 129
Msa1040060 MtrunA17_Chr2g0294311 29.226 349 213 12 24 350 19 355 7.89e-34 129
Msa1040060 MtrunA17_Chr5g0432101 32.440 336 188 14 33 347 29 346 8.37e-34 128
Msa1040060 MtrunA17_Chr2g0320671 31.138 334 199 13 38 355 31 349 9.08e-33 125
Msa1040060 MtrunA17_Chr7g0275021 29.706 340 198 12 33 351 30 349 2.06e-32 124
Msa1040060 MtrunA17_Chr8g0344931 28.889 360 225 10 3 349 1 342 5.14e-32 123
Msa1040060 MtrunA17_Chr2g0301591 29.097 299 168 7 10 290 11 283 6.59e-32 121
Msa1040060 MtrunA17_Chr3g0131321 29.459 370 207 15 6 348 7 349 1.55e-31 122
Msa1040060 MtrunA17_Chr7g0275011 29.132 357 212 12 23 357 20 357 1.67e-31 122
Msa1040060 MtrunA17_Chr5g0396511 28.824 340 209 12 39 361 48 371 2.32e-31 122
Msa1040060 MtrunA17_Chr3g0104831 28.873 284 179 8 98 364 27 304 2.47e-31 120
Msa1040060 MtrunA17_Chr1g0189931 29.080 337 192 12 39 351 34 347 2.56e-31 122
Msa1040060 MtrunA17_Chr4g0046151 29.144 374 217 15 9 353 8 362 2.58e-31 121
Msa1040060 MtrunA17_Chr1g0156921 27.666 347 213 13 24 351 30 357 3.18e-31 121
Msa1040060 MtrunA17_Chr8g0341001 29.213 356 218 14 10 350 11 347 5.06e-31 120
Msa1040060 MtrunA17_Chr7g0274991 28.274 336 210 11 39 357 35 356 1.03e-30 120
Msa1040060 MtrunA17_Chr2g0301551 28.231 294 172 8 84 359 37 309 1.30e-30 119
Msa1040060 MtrunA17_Chr8g0349301 28.882 322 197 11 9 316 5 308 4.37e-30 117
Msa1040060 MtrunA17_Chr4g0027521 28.969 359 219 12 15 353 5 347 4.87e-30 118
Msa1040060 MtrunA17_Chr2g0283541 34.884 215 131 7 156 364 86 297 5.30e-30 116
Msa1040060 MtrunA17_Chr3g0105401 27.019 359 224 14 11 351 6 344 1.13e-29 117
Msa1040060 MtrunA17_Chr5g0438621 28.056 360 226 13 11 355 8 349 1.40e-29 116
Msa1040060 MtrunA17_Chr8g0349331 28.152 341 194 11 16 346 12 311 1.74e-29 116
Msa1040060 MtrunA17_Chr2g0301571 28.428 299 174 9 84 363 37 314 2.78e-29 115
Msa1040060 MtrunA17_Chr4g0060811 29.204 339 201 10 32 350 22 341 3.93e-29 115
Msa1040060 MtrunA17_Chr3g0092131 29.326 341 202 11 30 350 16 337 5.25e-29 115
Msa1040060 MtrunA17_Chr4g0008851 27.520 367 229 14 14 358 7 358 8.70e-29 115
Msa1040060 MtrunA17_Chr3g0142921 27.978 361 228 13 6 350 6 350 9.38e-29 114
Msa1040060 MtrunA17_Chr8g0374101 28.691 359 228 11 10 351 12 359 1.51e-28 114
Msa1040060 MtrunA17_Chr1g0189901 27.869 366 226 14 9 357 10 354 1.52e-28 114
Msa1040060 MtrunA17_Chr2g0285061 25.600 375 239 9 1 361 9 357 2.03e-28 114
Msa1040060 MtrunA17_Chr2g0330781 28.274 336 202 14 35 350 30 346 2.20e-28 113
Msa1040060 MtrunA17_Chr2g0283191 28.659 328 194 13 39 341 40 352 4.60e-28 112
Msa1040060 MtrunA17_Chr5g0438631 27.019 359 222 14 11 350 6 343 6.10e-28 112
Msa1040060 MtrunA17_Chr5g0438641 29.217 332 205 14 35 351 31 347 6.76e-28 112
Msa1040060 MtrunA17_Chr5g0444401 27.143 350 202 11 37 357 28 353 1.89e-27 111
Msa1040060 MtrunA17_Chr3g0099231 26.146 371 218 15 16 357 9 352 2.84e-27 111
Msa1040060 MtrunA17_Chr3g0120861 27.596 337 208 13 35 353 37 355 5.83e-27 109
Msa1040060 MtrunA17_Chr8g0371481 28.916 332 209 12 33 350 38 356 1.29e-26 108
Msa1040060 MtrunA17_Chr1g0156911 27.855 359 216 16 3 341 6 341 1.92e-26 108
Msa1040060 MtrunA17_Chr8g0371471 28.399 331 209 13 35 351 40 356 2.63e-26 107
Msa1040060 MtrunA17_Chr8g0380041 28.443 334 199 10 39 352 33 346 3.08e-26 107
Msa1040060 MtrunA17_Chr5g0405821 27.520 367 228 13 8 349 5 358 6.73e-26 107
Msa1040060 MtrunA17_Chr5g0434621 27.300 337 206 12 37 354 25 341 1.20e-25 105
Msa1040060 MtrunA17_Chr8g0371491 29.041 365 218 15 8 350 5 350 1.82e-25 105
Msa1040060 MtrunA17_Chr1g0156901 28.415 366 217 17 9 351 21 364 2.13e-25 105
Msa1040060 MtrunA17_Chr1g0182811 25.824 364 227 15 10 351 8 350 2.79e-25 105
Msa1040060 MtrunA17_Chr3g0086641 26.400 375 235 12 9 361 7 362 4.69e-25 104
Msa1040060 MtrunA17_Chr1g0156931 26.667 360 227 15 10 351 14 354 6.69e-25 103
Msa1040060 MtrunA17_Chr3g0142941 28.406 345 210 15 24 350 35 360 7.01e-25 103
Msa1040060 MtrunA17_Chr6g0457921 28.655 342 210 13 35 357 27 353 8.46e-25 103
Msa1040060 MtrunA17_Chr3g0099161 26.197 355 205 13 34 357 89 417 1.49e-24 103
Msa1040060 MtrunA17_Chr1g0156891 28.024 339 204 15 33 351 40 358 3.97e-24 102
Msa1040060 MtrunA17_Chr7g0215961 26.882 372 212 13 6 357 12 343 5.14e-24 101
Msa1040060 MtrunA17_Chr5g0405831 27.419 372 223 14 8 350 5 358 5.40e-24 101
Msa1040060 MtrunA17_Chr5g0437421 26.667 345 212 13 33 351 28 357 1.84e-23 100
Msa1040060 MtrunA17_Chr3g0077581 27.198 364 234 14 12 357 11 361 2.80e-23 99.8
Msa1040060 MtrunA17_Chr3g0077571 27.059 340 211 12 23 346 17 335 6.14e-23 98.6
Msa1040060 MtrunA17_Chr5g0420811 25.698 358 232 12 1 348 1 334 6.63e-22 95.5
Msa1040060 MtrunA17_Chr3g0099151 26.471 340 190 13 34 341 84 395 3.21e-21 94.4
Msa1040060 MtrunA17_Chr1g0157001 28.099 363 220 14 10 352 9 350 2.64e-20 91.3
Msa1040060 MtrunA17_Chr4g0017431 25.915 355 224 14 5 341 3 336 2.74e-20 90.9
Msa1040060 MtrunA17_Chr1g0198391 25.298 336 213 9 33 346 29 348 6.45e-20 89.7
Msa1040060 MtrunA17_Chr1g0189891 28.358 335 192 18 39 351 31 339 1.03e-19 89.4
Msa1040060 MtrunA17_Chr4g0027571 31.707 164 105 2 192 355 63 219 2.60e-19 85.9
Msa1040060 MtrunA17_Chr1g0178931 26.299 308 208 6 38 341 38 330 6.12e-19 87.0
Msa1040060 MtrunA17_Chr2g0301561 28.319 226 136 7 84 291 37 254 8.04e-19 85.1
Msa1040060 MtrunA17_Chr8g0380031 26.975 367 221 17 12 363 62 396 3.78e-18 85.1
Msa1040060 MtrunA17_Chr1g0198381 25.392 319 205 10 38 346 3 298 1.57e-17 82.4
Msa1040060 MtrunA17_Chr5g0440501 26.446 242 156 7 127 360 10 237 4.01e-17 80.1
Msa1040060 MtrunA17_Chr7g0266061 24.451 319 209 8 38 346 43 339 4.02e-17 81.6
Msa1040060 MtrunA17_Chr7g0229581 32.026 153 97 2 203 355 7 152 1.05e-16 76.6
Msa1040060 MtrunA17_Chr3g0085881 26.822 343 213 13 31 361 27 343 1.32e-16 80.1
Msa1040060 MtrunA17_Chr1g0198351 23.885 314 211 8 38 344 44 336 1.85e-16 79.7
Msa1040060 MtrunA17_Chr2g0285001 25.490 357 220 13 10 347 9 338 4.40e-16 79.0
Msa1040060 MtrunA17_Chr2g0284921 26.586 331 193 14 38 346 35 337 4.81e-16 78.6
Msa1040060 MtrunA17_Chr6g0455661 27.723 202 131 5 159 355 269 460 3.26e-15 76.6
Msa1040060 MtrunA17_Chr6g0459921 28.205 195 125 5 159 348 158 342 2.21e-14 73.6
Msa1040060 MtrunA17_Chr8g0370961 23.767 223 154 5 131 351 20 228 3.18e-14 71.6
Msa1040060 MtrunA17_Chr1g0178941 24.251 334 190 11 38 341 41 341 1.62e-12 68.2
Msa1040060 MtrunA17_Chr3g0104801 43.182 88 47 2 38 122 45 132 4.15e-12 64.3
Msa1040060 MtrunA17_Chr4g0018571 29.310 116 78 1 240 355 64 175 4.52e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040060 AT1G09390.1 62.772 368 131 2 1 365 4 368 2.04e-174 490
Msa1040060 AT1G56670.1 62.170 341 126 2 29 366 32 372 5.57e-165 466
Msa1040060 AT3G62280.1 50.746 335 160 4 26 357 25 357 9.14e-125 363
Msa1040060 AT1G56670.2 63.158 266 95 2 29 291 32 297 9.61e-124 358
Msa1040060 AT1G54790.1 46.110 347 162 7 38 361 32 376 1.88e-104 312
Msa1040060 AT1G54790.3 43.947 380 177 10 8 361 8 377 2.36e-102 307
Msa1040060 AT1G54790.2 42.895 373 162 8 38 361 32 402 1.97e-98 298
Msa1040060 AT3G62280.2 50.916 273 129 4 26 295 25 295 1.13e-93 282
Msa1040060 AT3G05180.1 44.248 339 166 8 37 355 36 371 1.00e-91 280
Msa1040060 AT3G26430.1 41.161 379 197 9 9 365 4 378 8.28e-90 275
Msa1040060 AT1G67830.1 43.478 345 169 11 27 349 21 361 1.67e-86 266
Msa1040060 AT5G14450.1 40.106 379 192 12 12 366 20 387 4.89e-83 258
Msa1040060 AT3G27950.1 42.466 365 191 9 10 360 6 365 5.24e-82 255
Msa1040060 AT4G01130.1 41.261 349 171 10 38 361 35 374 8.71e-74 234
Msa1040060 AT2G27360.1 33.156 377 219 10 12 365 8 374 2.29e-56 189
Msa1040060 AT1G31550.2 34.584 373 211 12 15 365 14 375 7.36e-56 188
Msa1040060 AT4G01130.3 38.908 293 148 8 93 361 3 288 4.36e-55 183
Msa1040060 AT1G28580.1 32.732 388 227 11 1 365 1 377 8.50e-55 185
Msa1040060 AT1G28610.2 33.962 371 214 12 9 357 3 364 1.14e-54 184
Msa1040060 AT4G01130.2 41.328 271 135 8 38 291 35 298 1.23e-51 175
Msa1040060 AT1G31550.1 33.780 373 211 13 15 365 14 372 1.26e-51 177
Msa1040060 AT1G28640.1 32.796 372 216 10 7 357 11 369 1.93e-51 176
Msa1040060 AT3G48460.1 32.603 365 204 10 23 358 18 369 1.96e-51 176
Msa1040060 AT1G28570.1 31.937 382 222 11 6 365 9 374 4.64e-51 175
Msa1040060 AT1G28650.1 31.989 372 221 9 6 357 12 371 1.34e-50 174
Msa1040060 AT1G28600.1 33.600 375 217 13 12 365 7 370 2.61e-50 173
Msa1040060 AT1G28590.1 34.417 369 206 14 22 365 19 376 3.80e-49 170
Msa1040060 AT1G28670.1 32.190 379 210 11 7 357 11 370 3.86e-48 167
Msa1040060 AT5G45910.1 33.154 371 212 11 16 357 6 369 4.38e-47 164
Msa1040060 AT1G28660.1 31.452 372 221 10 7 357 11 369 6.55e-45 159
Msa1040060 AT1G28660.2 31.452 372 220 11 7 357 11 368 1.67e-43 155
Msa1040060 AT1G28580.2 30.693 303 183 9 81 366 5 297 6.57e-35 130
Msa1040060 AT5G40990.1 30.579 363 214 13 14 351 7 356 3.51e-33 127
Msa1040060 AT3G50400.1 30.295 373 227 14 6 357 5 365 4.35e-33 127
Msa1040060 AT1G53920.1 28.406 345 224 8 30 362 41 374 1.23e-32 126
Msa1040060 AT5G22810.1 28.919 370 234 12 1 355 1 356 2.14e-32 125
Msa1040060 AT3G16370.1 30.117 342 198 13 35 355 29 350 2.24e-32 124
Msa1040060 AT1G29660.1 27.794 349 214 9 33 361 26 356 1.36e-31 122
Msa1040060 AT5G03820.1 30.702 342 198 13 31 350 25 349 2.03e-31 122
Msa1040060 AT5G03820.2 30.702 342 198 13 31 350 53 377 2.24e-31 122
Msa1040060 AT1G29670.1 29.290 338 208 11 39 361 34 355 5.02e-31 121
Msa1040060 AT4G26790.1 28.529 340 212 12 28 351 20 344 8.93e-31 120
Msa1040060 AT4G26790.2 28.529 340 212 12 28 351 20 344 8.93e-31 120
Msa1040060 AT3G14225.2 31.143 350 207 13 24 351 19 356 1.18e-30 120
Msa1040060 AT1G29670.2 30.154 325 196 11 39 348 102 410 1.65e-30 121
Msa1040060 AT1G74460.1 29.944 354 211 13 17 351 3 338 1.86e-30 119
Msa1040060 AT1G71120.1 27.160 324 207 9 28 339 23 329 1.94e-30 119
Msa1040060 AT2G23540.1 29.179 329 207 10 39 350 50 369 2.72e-30 119
Msa1040060 AT1G23500.1 31.532 333 195 9 30 351 28 338 3.89e-30 118
Msa1040060 AT3G14225.1 30.791 354 207 13 24 351 19 360 6.46e-30 118
Msa1040060 AT2G42990.1 30.514 331 202 12 30 346 22 338 1.11e-29 117
Msa1040060 AT2G40250.1 28.615 325 207 11 38 347 37 351 1.22e-29 117
Msa1040060 AT4G10950.2 27.356 329 206 12 38 349 72 384 3.19e-29 117
Msa1040060 AT5G33370.1 29.254 335 208 10 39 357 32 353 6.24e-29 115
Msa1040060 AT5G03810.1 29.446 343 204 12 28 350 21 345 1.82e-28 114
Msa1040060 AT1G28570.3 32.353 204 130 4 167 365 11 211 2.29e-28 110
Msa1040060 AT5G63170.1 29.480 346 204 13 9 341 3 321 2.48e-28 113
Msa1040060 AT1G28570.2 28.938 273 180 6 100 365 37 302 3.66e-28 112
Msa1040060 AT2G30310.1 26.685 356 218 14 16 347 11 347 8.89e-28 112
Msa1040060 AT1G53940.2 30.120 332 205 11 36 351 38 358 1.09e-27 112
Msa1040060 AT2G04570.1 27.019 359 231 11 15 358 6 348 1.15e-27 112
Msa1040060 AT1G73610.1 31.579 361 200 14 8 351 7 337 1.28e-27 111
Msa1040060 AT4G28780.1 27.614 373 222 14 10 357 5 354 1.83e-27 111
Msa1040060 AT1G75880.2 27.297 370 219 13 9 350 19 366 1.85e-27 111
Msa1040060 AT4G10950.1 27.327 333 197 13 38 349 72 380 1.95e-27 112
Msa1040060 AT5G45950.1 28.274 336 194 15 38 352 41 350 2.06e-27 111
Msa1040060 AT5G41890.1 27.642 369 211 14 10 350 17 357 2.09e-27 111
Msa1040060 AT3G04290.1 29.326 341 210 12 34 357 26 352 3.52e-27 110
Msa1040060 AT4G18970.1 26.347 334 225 9 39 361 30 353 3.69e-27 110
Msa1040060 AT1G75880.1 26.810 373 218 13 9 350 19 367 6.40e-27 110
Msa1040060 AT5G42170.1 29.231 325 204 10 38 350 51 361 7.25e-27 110
Msa1040060 AT4G18970.2 26.347 334 225 9 39 361 30 353 7.66e-27 110
Msa1040060 AT5G15720.1 28.363 342 204 11 39 357 32 355 9.57e-27 109
Msa1040060 AT3G53100.1 27.434 339 222 10 29 355 22 348 2.37e-26 108
Msa1040060 AT5G08460.1 28.219 365 227 15 10 355 24 372 2.72e-26 108
Msa1040060 AT5G45670.1 26.171 363 242 10 10 361 7 354 2.93e-26 108
Msa1040060 AT2G30220.1 27.374 358 213 13 21 349 9 348 5.67e-26 107
Msa1040060 AT5G03610.1 26.518 313 209 6 34 339 40 338 9.64e-26 106
Msa1040060 AT2G24560.1 26.050 357 218 14 20 347 8 347 1.53e-25 106
Msa1040060 AT1G20135.1 28.152 341 208 10 14 341 6 322 2.00e-25 105
Msa1040060 AT1G54030.1 29.338 317 186 11 38 345 53 340 2.04e-25 106
Msa1040060 AT1G75900.1 29.305 331 205 12 35 351 42 357 3.95e-25 105
Msa1040060 AT2G31540.1 26.446 363 225 15 7 347 6 348 4.05e-25 105
Msa1040060 AT1G33811.1 27.083 384 228 12 3 357 1 361 4.91e-25 105
Msa1040060 AT5G45960.1 27.640 322 202 12 36 339 46 354 5.03e-25 105
Msa1040060 AT1G71691.2 27.500 360 225 12 5 348 24 363 6.08e-25 104
Msa1040060 AT1G06990.1 25.275 364 244 11 6 354 6 356 6.14e-25 104
Msa1040060 AT1G71250.1 26.630 368 226 12 1 348 10 353 6.88e-25 104
Msa1040060 AT5G18430.1 27.586 377 218 14 12 357 1 353 2.35e-23 100
Msa1040060 AT3G09930.2 26.959 319 201 8 34 339 36 335 3.76e-23 99.4
Msa1040060 AT3G09930.1 26.959 319 201 8 34 339 36 335 3.76e-23 99.4
Msa1040060 AT1G75890.1 25.134 374 240 11 2 348 13 373 7.05e-23 99.0
Msa1040060 AT1G75890.2 25.344 363 240 11 2 348 13 360 8.56e-23 98.6
Msa1040060 AT5G37690.1 26.124 356 213 13 21 349 6 338 9.60e-23 98.2
Msa1040060 AT1G58430.1 26.126 333 208 12 35 347 34 348 1.27e-22 97.8
Msa1040060 AT1G20132.1 29.762 336 207 14 33 354 58 378 1.44e-22 98.2
Msa1040060 AT1G75890.3 25.344 363 240 11 2 348 42 389 1.64e-22 98.2
Msa1040060 AT5G03980.1 25.352 355 212 12 10 356 12 321 1.97e-22 97.1
Msa1040060 AT1G20120.1 27.697 343 193 13 37 351 78 393 2.77e-22 97.4
Msa1040060 AT1G53990.1 28.571 364 217 15 10 349 1 345 4.64e-22 96.7
Msa1040060 AT3G14820.1 27.577 359 218 16 11 351 9 343 1.88e-20 91.7
Msa1040060 AT2G24560.2 26.316 304 183 12 20 294 8 299 3.41e-20 90.5
Msa1040060 AT1G71691.1 27.881 269 162 9 94 348 12 262 3.59e-20 89.7
Msa1040060 AT1G20130.1 28.024 339 207 14 38 354 205 528 6.57e-20 91.7
Msa1040060 AT2G19060.1 27.566 341 194 12 39 357 32 341 7.42e-20 90.1
Msa1040060 AT5G15720.3 26.923 286 171 9 93 357 56 324 8.85e-20 89.4
Msa1040060 AT1G20130.2 28.024 339 207 14 38 354 185 508 9.03e-20 90.9
Msa1040060 AT1G54030.2 28.413 271 163 9 38 300 53 300 1.22e-19 89.0
Msa1040060 AT1G75930.1 28.125 352 207 12 19 350 10 335 1.97e-19 88.6
Msa1040060 AT1G59406.1 26.087 345 212 14 26 350 20 341 2.02e-19 88.6
Msa1040060 AT1G59030.1 26.087 345 212 14 26 350 20 341 2.02e-19 88.6
Msa1040060 AT1G58725.1 26.087 345 212 14 26 350 20 341 2.02e-19 88.6
Msa1040060 AT5G55050.1 26.989 352 201 15 38 357 40 367 3.65e-19 88.2
Msa1040060 AT5G33370.2 28.090 267 170 7 39 291 32 290 7.17e-19 87.0
Msa1040060 AT1G54020.2 28.228 333 201 16 30 350 25 331 7.63e-19 87.4
Msa1040060 AT2G19010.1 27.221 349 210 12 26 358 20 340 1.65e-18 85.9
Msa1040060 AT2G19010.2 27.221 349 210 12 26 358 50 370 2.00e-18 86.3
Msa1040060 AT5G37690.2 24.930 357 208 12 21 349 6 330 5.24e-18 84.7
Msa1040060 AT1G28610.1 33.810 210 114 10 9 201 3 204 1.09e-17 82.0
Msa1040060 AT1G58520.3 26.190 336 198 15 35 350 29 334 1.25e-17 83.6
Msa1040060 AT1G58525.1 26.190 336 198 15 35 350 29 334 1.25e-17 83.6
Msa1040060 AT1G53940.1 29.478 268 169 9 36 291 38 297 1.56e-17 82.8
Msa1040060 AT1G54010.1 27.035 344 208 16 12 341 16 330 2.60e-17 82.8
Msa1040060 AT3G14220.1 26.136 352 222 17 9 347 6 332 2.97e-17 82.4
Msa1040060 AT1G54000.1 25.356 351 219 15 10 346 14 335 4.51e-17 82.4
Msa1040060 AT2G31550.1 28.351 194 126 5 161 349 24 209 6.07e-17 79.3
Msa1040060 AT2G03980.2 24.857 350 227 12 14 346 21 351 6.52e-17 81.6
Msa1040060 AT2G03980.3 24.857 350 227 12 14 346 21 351 6.52e-17 81.6
Msa1040060 AT2G03980.1 24.857 350 227 12 14 346 21 351 6.52e-17 81.6
Msa1040060 AT2G03980.4 24.857 350 227 12 14 346 21 351 6.52e-17 81.6
Msa1040060 AT5G15720.2 26.642 274 167 8 39 291 32 292 2.44e-16 79.3
Msa1040060 AT1G71691.3 26.502 283 178 9 25 291 43 311 3.85e-16 78.6
Msa1040060 AT1G28600.2 32.524 206 115 9 12 201 7 204 1.60e-15 75.5
Msa1040060 AT4G16230.1 34.673 199 114 9 39 224 32 227 1.61e-15 75.9
Msa1040060 AT4G16233.1 35.088 114 70 2 238 351 4 113 2.14e-15 72.8
Msa1040060 AT3G43550.1 24.585 301 188 13 11 291 5 286 5.04e-14 72.4
Msa1040060 AT1G75920.1 27.273 385 197 21 11 351 1 346 6.43e-14 72.8
Msa1040060 AT3G14210.1 27.893 337 200 16 28 346 26 337 3.18e-13 70.9
Msa1040060 AT5G03600.1 27.129 317 186 13 38 339 15 301 7.16e-13 69.3
Msa1040060 AT5G03600.2 27.011 348 204 15 14 341 21 338 7.37e-13 69.3
Msa1040060 AT1G75920.3 27.473 364 177 19 11 351 6 305 7.41e-13 68.9
Msa1040060 AT1G54020.1 27.344 256 154 11 103 350 14 245 7.68e-11 62.8
Msa1040060 AT1G54020.5 27.344 256 154 11 103 350 14 245 7.68e-11 62.8
Msa1040060 AT1G54020.3 27.344 256 154 11 103 350 14 245 7.68e-11 62.8

Find 117 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGAAAGGAAGATATTT+TGG 0.128198 7_1:-77403275 None:intergenic
ATGAAGGTGGCAGGAAATTT+TGG 0.130037 7_1:+77404991 Msa1040060:CDS
GATACGGGTGGACTCGTTTC+AGG 0.202731 7_1:+77401206 Msa1040060:CDS
TGTGATGAGGTCATTCTTAA+TGG 0.202835 7_1:-77405207 None:intergenic
TGAGACAGTGCAATTAATTT+AGG 0.214283 7_1:-77405044 None:intergenic
GCACTATACTTGATTGATAT+TGG 0.224234 7_1:+77403926 Msa1040060:CDS
CTTGCTTGGATTACCATATT+TGG 0.259524 7_1:-77405237 None:intergenic
TATTTGCAGCCTCGGTAAAA+TGG 0.261572 7_1:-77405656 None:intergenic
ATCACAAATGCCACCAAATA+TGG 0.281135 7_1:+77405224 Msa1040060:CDS
TGGCATTCTCACTTGTTCTA+TGG 0.285339 7_1:+77401084 Msa1040060:CDS
TCCTTTCTCTTTAAATATAC+AGG 0.293831 7_1:+77403286 Msa1040060:CDS
CCAGACATGGAGTCCAAGTA+TGG 0.324420 7_1:-77403200 None:intergenic
ACTCTTGCATCGAAATTATA+AGG 0.325762 7_1:-77405567 None:intergenic
TCCACGCCACACATACCTTT+TGG 0.337158 7_1:+77405714 Msa1040060:CDS
CTAATGGTATGCTGCGGCTT+TGG 0.352290 7_1:+77405537 Msa1040060:CDS
TGATCAACGACCAAGGCTTC+CGG 0.357053 7_1:+77403900 Msa1040060:CDS
CAACTGAATAAACCTGTTCT+TGG 0.365267 7_1:-77405848 None:intergenic
AAAATCTTGTATTCAAACTT+TGG 0.366532 7_1:-77403172 None:intergenic
AAGAAGGATCTGGATTCATT+TGG 0.373469 7_1:+77405068 Msa1040060:CDS
TGAAATTGAGAATGCTGTTA+AGG 0.381641 7_1:+77404027 Msa1040060:CDS
GATCAACGACCAAGGCTTCC+GGG 0.385168 7_1:+77403901 Msa1040060:CDS
CGACACTTAAGTATGAGTTT+TGG 0.385624 7_1:+77401056 Msa1040060:exon
CCATACTTGGACTCCATGTC+TGG 0.388444 7_1:+77403200 Msa1040060:CDS
TGAAAGAAAGTGCGACCATT+TGG 0.394986 7_1:-77401251 None:intergenic
ATGGTATGCTGCGGCTTTGG+AGG 0.400442 7_1:+77405540 Msa1040060:CDS
CGGTGATTCGAACTCGGATA+CGG 0.414137 7_1:+77401190 Msa1040060:CDS
ATTTGCCAAAGGAGAGGGTT+TGG 0.426120 7_1:+77405943 Msa1040060:three_prime_UTR
CGACCATTTGGAAGATTGAC+AGG 0.430249 7_1:-77401239 None:intergenic
GTTCACAATACCGGGCCCTT+TGG 0.433699 7_1:+77405014 Msa1040060:CDS
ACCCATGTTGCATTGTTGCC+AGG 0.433851 7_1:+77405900 Msa1040060:three_prime_UTR
GGCTACGAGCTTTGAAATGT+TGG 0.434142 7_1:-77403319 None:intergenic
TAACGAAGTAGAAGGTAGAT+TGG 0.434428 7_1:+77401016 Msa1040060:five_prime_UTR
CAATTTCAGTGATAACTGTT+GGG 0.436636 7_1:-77404012 None:intergenic
GGATTGCCCGCCCGTCTTTG+TGG 0.438590 7_1:+77400930 None:intergenic
GAAATTAAGAACTGAATTGA+AGG 0.443148 7_1:+77405154 Msa1040060:CDS
CTATGTACTTCTCCAAGAAC+AGG 0.443972 7_1:+77405836 Msa1040060:three_prime_UTR
AAACACCAAACCCTCTCCTT+TGG 0.447036 7_1:-77405948 None:intergenic
TCAATTTCAGTGATAACTGT+TGG 0.447405 7_1:-77404013 None:intergenic
CAAGAACAGGTTTATTCAGT+TGG 0.448382 7_1:+77405849 Msa1040060:three_prime_UTR
GGTTATCAAGTTTGTGATGA+AGG 0.453176 7_1:+77405606 Msa1040060:CDS
AGTGAGTATAACGAAGTAGA+AGG 0.456695 7_1:+77401008 Msa1040060:five_prime_UTR
TTCCCTGTCAATCTTCCAAA+TGG 0.459428 7_1:+77401236 Msa1040060:CDS
AGGTTTCACAAATCCGCTAA+TGG 0.459526 7_1:+77405521 Msa1040060:intron
GCTTGGATTACCATATTTGG+TGG 0.461252 7_1:-77405234 None:intergenic
GTCTTTCCCACCACAAAGAC+GGG 0.462412 7_1:-77400940 None:intergenic
ACCTGTATATTTAAAGAGAA+AGG 0.465233 7_1:-77403287 None:intergenic
GGAGCAAACTTTGCAGTGGT+TGG 0.466134 7_1:+77403239 Msa1040060:CDS
TTCTTGGAGAAGTACATAGA+TGG 0.479093 7_1:-77405832 None:intergenic
TGCCCGCCCGTCTTTGTGGT+GGG 0.488828 7_1:+77400934 None:intergenic
AGCCTTCAGCTTGCTACCTC+AGG 0.490541 7_1:+77403338 Msa1040060:CDS
GGTGGACTCGTTTCAGGACT+CGG 0.491006 7_1:+77401212 Msa1040060:CDS
ATAAATATCAACATAGACTA+AGG 0.496645 7_1:-77405183 None:intergenic
TCCACTGGTCGTTTGTCTGA+TGG 0.496988 7_1:+77401278 Msa1040060:CDS
GCAACAATGCAACATGGGTC+AGG 0.499073 7_1:-77405896 None:intergenic
ATGAAATAGTCTAATGATTG+AGG 0.501948 7_1:+77406152 Msa1040060:three_prime_UTR
AATTGCACTGTCTCAAAAGA+AGG 0.503409 7_1:+77405052 Msa1040060:CDS
TTACCGAGGCTGCAAATACA+TGG 0.504350 7_1:+77405661 Msa1040060:CDS
AAGCCGCAGCATACCATTAG+CGG 0.506464 7_1:-77405534 None:intergenic
GGTGATTCGAACTCGGATAC+GGG 0.507267 7_1:+77401191 Msa1040060:CDS
AAGGATCACGGTATGTGAGT+TGG 0.509966 7_1:+77405625 Msa1040060:CDS
ACTGTCTCAAAAGAAGGATC+TGG 0.515499 7_1:+77405058 Msa1040060:CDS
ACTTTCTTTCACAGATCCAC+TGG 0.518840 7_1:+77401263 Msa1040060:CDS
GTTTGCTCCATTTGTGAATG+TGG 0.523898 7_1:-77403225 None:intergenic
TCTGGATCCACATTCACAAA+TGG 0.524287 7_1:+77403218 Msa1040060:CDS
TCATAATAAATTAATAATAG+AGG 0.524634 7_1:-77406081 None:intergenic
TTGTTATTTGCCAAAGGAGA+GGG 0.528079 7_1:+77405938 Msa1040060:three_prime_UTR
CCGAACACGAATACTACTGC+TGG 0.529032 7_1:-77401170 None:intergenic
AGGATCACGGTATGTGAGTT+GGG 0.534367 7_1:+77405626 Msa1040060:CDS
TATCCATGTATTTGCAGCCT+CGG 0.535519 7_1:-77405664 None:intergenic
GTGGTGGGAAAGACAAGATC+CGG 0.535541 7_1:+77400949 Msa1040060:five_prime_UTR
AGGAAGACAGCCAAAGGGCC+CGG 0.536593 7_1:-77405024 None:intergenic
TTGCCCGCCCGTCTTTGTGG+TGG 0.537475 7_1:+77400933 None:intergenic
TGGTATGCTGCGGCTTTGGA+GGG 0.540229 7_1:+77405541 Msa1040060:CDS
CGTGTTCGGTGATTCGAACT+CGG 0.542232 7_1:+77401184 Msa1040060:CDS
CAGTGACAGAAGAAACCAAA+AGG 0.542378 7_1:-77405729 None:intergenic
ACCTGGCAACAATGCAACAT+GGG 0.543404 7_1:-77405901 None:intergenic
GTTTGTATAATGAAGGTGGC+AGG 0.543630 7_1:+77404982 Msa1040060:CDS
TCACGGTATGTGAGTTGGGA+TGG 0.549362 7_1:+77405630 Msa1040060:CDS
AATGATACGGGCAATAAAGT+AGG 0.551182 7_1:+77400984 Msa1040060:five_prime_UTR
AACATAGGATCGAATGATAC+GGG 0.552997 7_1:+77400972 Msa1040060:five_prime_UTR
TGTCTTTCCCACCACAAAGA+CGG 0.554350 7_1:-77400941 None:intergenic
ATAGTGCATCCCGGAAGCCT+TGG 0.557801 7_1:-77403910 None:intergenic
AAAGACAAGATCCGGAACAT+AGG 0.558927 7_1:+77400957 Msa1040060:five_prime_UTR
GAACATAGGATCGAATGATA+CGG 0.559046 7_1:+77400971 Msa1040060:five_prime_UTR
CAGACATGGAGTCCAAGTAT+GGG 0.559260 7_1:-77403199 None:intergenic
TATCATTCGATCCTATGTTC+CGG 0.560952 7_1:-77400968 None:intergenic
CCAGCAGTAGTATTCGTGTT+CGG 0.567604 7_1:+77401170 Msa1040060:CDS
GCTTTGAGTACTGTGAGTAG+TGG 0.569587 7_1:+77401137 Msa1040060:CDS
AACCTGGCAACAATGCAACA+TGG 0.578681 7_1:-77405902 None:intergenic
AGAGTGACATGCGGTCAACC+TGG 0.580356 7_1:+77405585 Msa1040060:CDS
TAATTTAGGAAGACAGCCAA+AGG 0.581756 7_1:-77405030 None:intergenic
TCATCACAAACTTGATAACC+AGG 0.588648 7_1:-77405603 None:intergenic
AATTTAGGAAGACAGCCAAA+GGG 0.591424 7_1:-77405029 None:intergenic
ACCAAAAGGTATGTGTGGCG+TGG 0.596206 7_1:-77405715 None:intergenic
ATGCAGAGTTTGTATAATGA+AGG 0.601225 7_1:+77404975 Msa1040060:intron
ATTTGGTGGCATTTGTGATG+AGG 0.601509 7_1:-77405220 None:intergenic
TCCATCAGACAAACGACCAG+TGG 0.606932 7_1:-77401279 None:intergenic
CAGAGTTTGTATAATGAAGG+TGG 0.611951 7_1:+77404978 Msa1040060:intron
CAATCAAGTATAGTGCATCC+CGG 0.612384 7_1:-77403919 None:intergenic
GATAACTGTTGGGATCCTCT+TGG 0.622350 7_1:-77404002 None:intergenic
CAAAACTCATACTTAAGTGT+CGG 0.622514 7_1:-77401055 None:intergenic
TACCTGAGGTAGCAAGCTGA+AGG 0.627506 7_1:-77403340 None:intergenic
TTTGTTATTTGCCAAAGGAG+AGG 0.629900 7_1:+77405937 Msa1040060:three_prime_UTR
ATTAAACTATGCACATTACG+AGG 0.632497 7_1:+77405765 Msa1040060:three_prime_UTR
AAGAAACCAAAAGGTATGTG+TGG 0.633267 7_1:-77405720 None:intergenic
AAATGGAGCAAACTTTGCAG+TGG 0.643021 7_1:+77403235 Msa1040060:CDS
AAGTTTGTGATGAAGGATCA+CGG 0.647050 7_1:+77405613 Msa1040060:CDS
GACCATTTGGAAGATTGACA+GGG 0.662906 7_1:-77401238 None:intergenic
GATTCGAACTCGGATACGGG+TGG 0.665881 7_1:+77401194 Msa1040060:CDS
AGACATGGAGTCCAAGTATG+GGG 0.667647 7_1:-77403198 None:intergenic
CTTGCATCGAAATTATAAGG+TGG 0.680956 7_1:-77405564 None:intergenic
CATACGTGCAAGTCACCAAG+AGG 0.682478 7_1:+77403987 Msa1040060:CDS
TGTGAATGTGGATCCAGACA+TGG 0.686318 7_1:-77403213 None:intergenic
AATCCGCTAATGGTATGCTG+CGG 0.695188 7_1:+77405531 Msa1040060:CDS
TTCGATGCAAGAGTGACATG+CGG 0.705186 7_1:+77405576 Msa1040060:CDS
TTAAACTATGCACATTACGA+GGG 0.705838 7_1:+77405766 Msa1040060:three_prime_UTR
TACAGAGAAAGTCGATAACG+AGG 0.712922 7_1:-77401304 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATATTTTTTTTTTTTTT+TGG + chr7_1:77401764-77401783 Msa1040060:intron 0.0%
!!! TTTATTTTTTATTTTTTTTA+AGG + chr7_1:77405983-77406002 Msa1040060:three_prime_UTR 0.0%
!!! TATTGTTTTAATTATTATCT+GGG - chr7_1:77402342-77402361 None:intergenic 10.0%
!!! TTATTGTTTTAATTATTATC+TGG - chr7_1:77402343-77402362 None:intergenic 10.0%
!! ATATAAATCATATATGATTA+TGG - chr7_1:77402737-77402756 None:intergenic 10.0%
!!! TATAAACCATATATTTTTTT+TGG - chr7_1:77402767-77402786 None:intergenic 10.0%
!!! TAATTTTATAATCATTAATC+AGG - chr7_1:77403539-77403558 None:intergenic 10.0%
!! TAAATTTATTTGTTTCATAA+TGG + chr7_1:77404108-77404127 Msa1040060:intron 10.0%
!! TCATAATAAATTAATAATAG+AGG - chr7_1:77406084-77406103 None:intergenic 10.0%
!! TATGTACCAAAAAAAATATA+TGG + chr7_1:77402758-77402777 Msa1040060:intron 15.0%
!!! AATAATTTTTCACTTACTAA+TGG + chr7_1:77403014-77403033 Msa1040060:intron 15.0%
!!! TTTAAGGTTATTACTAATAT+TGG - chr7_1:77403118-77403137 None:intergenic 15.0%
!! AAAAATATTCATCAGATTTA+AGG - chr7_1:77403134-77403153 None:intergenic 15.0%
!! TTATAAAATTAGTGTTATAG+TGG + chr7_1:77403548-77403567 Msa1040060:intron 15.0%
!! ATGAAACAAATAAATTTAGT+CGG - chr7_1:77404106-77404125 None:intergenic 15.0%
!!! AATTTAATTTTCTGTCATAA+AGG - chr7_1:77404235-77404254 None:intergenic 15.0%
!!! TTTATCCTAATTTTGATTTT+GGG - chr7_1:77404400-77404419 None:intergenic 15.0%
!!! TTTTATCCTAATTTTGATTT+TGG - chr7_1:77404401-77404420 None:intergenic 15.0%
!! AAATGTATATATATGTAATC+AGG - chr7_1:77404599-77404618 None:intergenic 15.0%
!! TTACATATATATACATTTCA+TGG + chr7_1:77404601-77404620 Msa1040060:intron 15.0%
!! AAAAATCTTGATCTTATTAT+TGG + chr7_1:77404916-77404935 Msa1040060:intron 15.0%
!!! ATTTTATTTTAAACTGCAGT+AGG + chr7_1:77401583-77401602 Msa1040060:intron 20.0%
!! ATCGATTATTATTTATCTTG+AGG + chr7_1:77401627-77401646 Msa1040060:intron 20.0%
!!! AAAATATATTTCTGTCAACT+TGG - chr7_1:77401754-77401773 None:intergenic 20.0%
!!! ACAAAGCATTAATAGAAAAA+GGG - chr7_1:77402050-77402069 None:intergenic 20.0%
!! AAGCAAACATGATTAATTAT+TGG - chr7_1:77402205-77402224 None:intergenic 20.0%
!! AAATTTACTTTGTGAGAATT+TGG + chr7_1:77402226-77402245 Msa1040060:intron 20.0%
!!! CTCTTTTTAATTATGGTTTT+TGG - chr7_1:77402402-77402421 None:intergenic 20.0%
!!! ATTTATTTTTGAACCCATTA+CGG + chr7_1:77402493-77402512 Msa1040060:intron 20.0%
!!! ATCTAAGACAAAAAAACAAA+CGG + chr7_1:77402658-77402677 Msa1040060:intron 20.0%
!!! ACTAGTGTTTTTTTAAAGTT+GGG - chr7_1:77402684-77402703 None:intergenic 20.0%
!!! AACTAGTGTTTTTTTAAAGT+TGG - chr7_1:77402685-77402704 None:intergenic 20.0%
!!! AATATTTTTCTTCAAACCAT+TGG + chr7_1:77403145-77403164 Msa1040060:intron 20.0%
!! AAAATCTTGTATTCAAACTT+TGG - chr7_1:77403175-77403194 None:intergenic 20.0%
!! CAATCAAATATTTCAAACAA+GGG - chr7_1:77403445-77403464 None:intergenic 20.0%
!!! TAGTTTTCTTTTCTTTTCTT+TGG - chr7_1:77403701-77403720 None:intergenic 20.0%
!!! CACTTTTTTTTTCACTTTTA+CGG + chr7_1:77404204-77404223 Msa1040060:intron 20.0%
!! AAAATCAAGAAATTTAGAGA+TGG - chr7_1:77404306-77404325 None:intergenic 20.0%
!! TGATTCCTACTTATAATAAA+AGG + chr7_1:77404478-77404497 Msa1040060:intron 20.0%
!!! AGAAACCTTTTATTATAAGT+AGG - chr7_1:77404486-77404505 None:intergenic 20.0%
!!! TATAAACTAAAGTATCAAAC+CGG - chr7_1:77404523-77404542 None:intergenic 20.0%
!! TATTGAATAAACTCATTGTT+TGG - chr7_1:77404652-77404671 None:intergenic 20.0%
!! AGTTTATTCAATAAGATTCT+TGG + chr7_1:77404659-77404678 Msa1040060:intron 20.0%
!!! AGTTTCTTTTATTATTACTC+AGG + chr7_1:77404750-77404769 Msa1040060:intron 20.0%
!!! GTTTCTTTTATTATTACTCA+GGG + chr7_1:77404751-77404770 Msa1040060:intron 20.0%
!! ATAAATATCAACATAGACTA+AGG - chr7_1:77405186-77405205 None:intergenic 20.0%
!!! GTATTGATTATTATTAGACT+CGG + chr7_1:77405277-77405296 Msa1040060:intron 20.0%
!!! TATTGATTATTATTAGACTC+GGG + chr7_1:77405278-77405297 Msa1040060:intron 20.0%
!! TTGTTAATACATTATCAAAC+AGG + chr7_1:77405501-77405520 Msa1040060:intron 20.0%
!!! ATGAACTCTCTAAAAAAAAA+AGG + chr7_1:77406117-77406136 Msa1040060:three_prime_UTR 20.0%
!! TACTCTTACTAAGATTAGTT+TGG + chr7_1:77401449-77401468 Msa1040060:intron 25.0%
! TAATCGATAATTTCAAGACA+CGG - chr7_1:77401615-77401634 None:intergenic 25.0%
! CTAATTATTTACCTGATAAC+CGG + chr7_1:77401724-77401743 Msa1040060:intron 25.0%
! CAATATAATAGAGACAGAAA+AGG - chr7_1:77401975-77401994 None:intergenic 25.0%
!! GACAAAGCATTAATAGAAAA+AGG - chr7_1:77402051-77402070 None:intergenic 25.0%
!!! GTCATCACTCTTTTTAATTA+TGG - chr7_1:77402409-77402428 None:intergenic 25.0%
! AATTAAAAAGAGTGATGACA+TGG + chr7_1:77402410-77402429 Msa1040060:intron 25.0%
! AAAATAAATGAGGAATGCTA+GGG - chr7_1:77402482-77402501 None:intergenic 25.0%
! AAAAATAAATGAGGAATGCT+AGG - chr7_1:77402483-77402502 None:intergenic 25.0%
!! AATGGGTTCAAAAATAAATG+AGG - chr7_1:77402492-77402511 None:intergenic 25.0%
!!! TTTATTTTTGAACCCATTAC+GGG + chr7_1:77402494-77402513 Msa1040060:intron 25.0%
!!! GTGTGAAAGTTTAATTTTAG+TGG + chr7_1:77402624-77402643 Msa1040060:intron 25.0%
! TAGGGAACACATTAAATTAT+TGG + chr7_1:77402821-77402840 Msa1040060:intron 25.0%
!! CGATTTCTTTTATAGATAGA+CGG + chr7_1:77402859-77402878 Msa1040060:intron 25.0%
! ACAAAAATGCAAAAATTGCT+AGG - chr7_1:77402945-77402964 None:intergenic 25.0%
!! AGCAATTTTTGCATTTTTGT+CGG + chr7_1:77402945-77402964 Msa1040060:intron 25.0%
!! AATTTTTCACTTACTAATGG+AGG + chr7_1:77403017-77403036 Msa1040060:intron 25.0%
!! AAGAGAAAGGAAGATATTTT+GGG - chr7_1:77403277-77403296 None:intergenic 25.0%
!! AAAGAGAAAGGAAGATATTT+TGG - chr7_1:77403278-77403297 None:intergenic 25.0%
! TCCTTTCTCTTTAAATATAC+AGG + chr7_1:77403286-77403305 Msa1040060:CDS 25.0%
! ACCTGTATATTTAAAGAGAA+AGG - chr7_1:77403290-77403309 None:intergenic 25.0%
! GCAATCAAATATTTCAAACA+AGG - chr7_1:77403446-77403465 None:intergenic 25.0%
! ATAAATTTAGTCGGATTCAT+AGG - chr7_1:77404097-77404116 None:intergenic 25.0%
! TTGTTTCATAATGGTGATTT+AGG + chr7_1:77404117-77404136 Msa1040060:intron 25.0%
! CGTAAAAGTGAAAAAAAAAG+TGG - chr7_1:77404206-77404225 None:intergenic 25.0%
! AGTACTCAATAAAAGGAAAA+GGG - chr7_1:77404260-77404279 None:intergenic 25.0%
! AAGTACTCAATAAAAGGAAA+AGG - chr7_1:77404261-77404280 None:intergenic 25.0%
!!! TAAAGGAAGTACTCAATAAA+AGG - chr7_1:77404267-77404286 None:intergenic 25.0%
! TTTCTCCCAAAATCAAAATT+AGG + chr7_1:77404392-77404411 Msa1040060:intron 25.0%
! TGTATATATATGTAATCAGG+TGG - chr7_1:77404596-77404615 None:intergenic 25.0%
!! TTTATTGTGTGTTTTCGTTT+TGG + chr7_1:77404712-77404731 Msa1040060:intron 25.0%
! CTTCATTTGTAATTGGATAA+AGG + chr7_1:77404776-77404795 Msa1040060:intron 25.0%
! GAAATTAAGAACTGAATTGA+AGG + chr7_1:77405154-77405173 Msa1040060:CDS 25.0%
!!! CATCATATTGTTTTAGTTCT+AGG + chr7_1:77405333-77405352 Msa1040060:intron 25.0%
! CAAATAACAAAAACACTATC+TGG - chr7_1:77405928-77405947 None:intergenic 25.0%
! ATGAAATAGTCTAATGATTG+AGG + chr7_1:77406152-77406171 Msa1040060:three_prime_UTR 25.0%
CAAAACTCATACTTAAGTGT+CGG - chr7_1:77401058-77401077 None:intergenic 30.0%
!! ACTAAGATTAGTTTGGTATC+TGG + chr7_1:77401456-77401475 Msa1040060:intron 30.0%
!!! TTATTTTAAACTGCAGTAGG+TGG + chr7_1:77401586-77401605 Msa1040060:intron 30.0%
AATCGATAATTTCAAGACAC+GGG - chr7_1:77401614-77401633 None:intergenic 30.0%
TATTTATCTTGAGGAATGCT+AGG + chr7_1:77401636-77401655 Msa1040060:intron 30.0%
ATTTATCTTGAGGAATGCTA+GGG + chr7_1:77401637-77401656 Msa1040060:intron 30.0%
ATTAGAAAGAGAAGATGACA+TGG - chr7_1:77401709-77401728 None:intergenic 30.0%
TAAACCCTGTTAAATTGAAC+CGG + chr7_1:77402373-77402392 Msa1040060:intron 30.0%
!!! TAATTATGGTTTTTGGCTAC+CGG - chr7_1:77402395-77402414 None:intergenic 30.0%
GTGAACGAAATAAAAAGCAA+AGG - chr7_1:77403375-77403394 None:intergenic 30.0%
TGAGGAAATAAGAGGAAAAT+CGG - chr7_1:77403506-77403525 None:intergenic 30.0%
GATACATACAGATGAAATTG+AGG + chr7_1:77403741-77403760 Msa1040060:intron 30.0%
CATTGCAATTAGTTCATTCT+TGG - chr7_1:77403861-77403880 None:intergenic 30.0%
GAACTAATTGCAATGCAAAT+AGG + chr7_1:77403866-77403885 Msa1040060:intron 30.0%
AAAAATATGATCAACGACCA+AGG + chr7_1:77403893-77403912 Msa1040060:CDS 30.0%
GCACTATACTTGATTGATAT+TGG + chr7_1:77403926-77403945 Msa1040060:CDS 30.0%
! TTTTGGTAAATGAATCAGCA+AGG - chr7_1:77403961-77403980 None:intergenic 30.0%
! TTGCACGTATGATAGATTTT+TGG - chr7_1:77403978-77403997 None:intergenic 30.0%
CAATTTCAGTGATAACTGTT+GGG - chr7_1:77404015-77404034 None:intergenic 30.0%
TCAATTTCAGTGATAACTGT+TGG - chr7_1:77404016-77404035 None:intergenic 30.0%
TGAAATTGAGAATGCTGTTA+AGG + chr7_1:77404027-77404046 Msa1040060:CDS 30.0%
GTGATTTAGGTATAGCTAAA+AGG + chr7_1:77404130-77404149 Msa1040060:intron 30.0%
! AGTTTTCCTCTCAAAAATAG+TGG - chr7_1:77404180-77404199 None:intergenic 30.0%
GTACTCAATAAAAGGAAAAG+GGG - chr7_1:77404259-77404278 None:intergenic 30.0%
! TAGGATAAAAAAGTGTGAAG+TGG + chr7_1:77404411-77404430 Msa1040060:intron 30.0%
! ATAAAAAAGTGTGAAGTGGT+TGG + chr7_1:77404415-77404434 Msa1040060:intron 30.0%
TTTCTCCAGTACATAAAATC+CGG + chr7_1:77404501-77404520 Msa1040060:intron 30.0%
ATTCAATAAGATTCTTGGCA+TGG + chr7_1:77404664-77404683 Msa1040060:intron 30.0%
ATGCAGAGTTTGTATAATGA+AGG + chr7_1:77404975-77404994 Msa1040060:intron 30.0%
!!! AAATTTTGGGTTCACAATAC+CGG + chr7_1:77405005-77405024 Msa1040060:CDS 30.0%
TGAGACAGTGCAATTAATTT+AGG - chr7_1:77405047-77405066 None:intergenic 30.0%
ACTCTTGCATCGAAATTATA+AGG - chr7_1:77405570-77405589 None:intergenic 30.0%
ATTAAACTATGCACATTACG+AGG + chr7_1:77405765-77405784 Msa1040060:three_prime_UTR 30.0%
TTAAACTATGCACATTACGA+GGG + chr7_1:77405766-77405785 Msa1040060:three_prime_UTR 30.0%
!!! GTGTTTTTGTTATTTGCCAA+AGG + chr7_1:77405932-77405951 Msa1040060:three_prime_UTR 30.0%
TATCATTCGATCCTATGTTC+CGG - chr7_1:77400971-77400990 None:intergenic 35.0%
GAACATAGGATCGAATGATA+CGG + chr7_1:77400971-77400990 Msa1040060:five_prime_UTR 35.0%
AACATAGGATCGAATGATAC+GGG + chr7_1:77400972-77400991 Msa1040060:five_prime_UTR 35.0%
AATGATACGGGCAATAAAGT+AGG + chr7_1:77400984-77401003 Msa1040060:five_prime_UTR 35.0%
AGTGAGTATAACGAAGTAGA+AGG + chr7_1:77401008-77401027 Msa1040060:five_prime_UTR 35.0%
TAACGAAGTAGAAGGTAGAT+TGG + chr7_1:77401016-77401035 Msa1040060:five_prime_UTR 35.0%
! CGACACTTAAGTATGAGTTT+TGG + chr7_1:77401056-77401075 Msa1040060:exon 35.0%
!! CACTTAAGTATGAGTTTTGG+CGG + chr7_1:77401059-77401078 Msa1040060:exon 35.0%
!! GTTAAAAGGAGAGTGTTAGA+GGG - chr7_1:77402451-77402470 None:intergenic 35.0%
!! TGTTAAAAGGAGAGTGTTAG+AGG - chr7_1:77402450-77402469 None:intergenic 35.0%
ACATGTATGGGTGTGTTAAA+AGG - chr7_1:77402437-77402456 None:intergenic 35.0%
AGCTCACAAAAAAAATCCCT+GGG - chr7_1:77401872-77401891 None:intergenic 35.0%
AAAGTAGAGAATTCTTGTGC+TGG + chr7_1:77402087-77402106 Msa1040060:intron 35.0%
CTTTGTGAGAATTTGGCATA+AGG + chr7_1:77402233-77402252 Msa1040060:intron 35.0%
GAGAACGAAAAGAAACAAGA+TGG + chr7_1:77402282-77402301 Msa1040060:intron 35.0%
AACGAAAAGAAACAAGATGG+AGG + chr7_1:77402285-77402304 Msa1040060:intron 35.0%
ACATGTATGGGTGTGTTAAA+AGG + chr7_1:77402437-77402456 Msa1040060:intron 35.0%
!! TGTTAAAAGGAGAGTGTTAG+AGG + chr7_1:77402450-77402469 Msa1040060:intron 35.0%
!! GTTAAAAGGAGAGTGTTAGA+GGG + chr7_1:77402451-77402470 Msa1040060:intron 35.0%
ATTGAAGAAAACAGAAACCG+CGG - chr7_1:77402528-77402547 None:intergenic 35.0%
TGACAAATGCCGAAATTGTA+AGG + chr7_1:77402571-77402590 Msa1040060:intron 35.0%
AGACATACCATAAGAGTTAC+CGG + chr7_1:77402793-77402812 Msa1040060:intron 35.0%
TATTATCCCGGTAACTCTTA+TGG - chr7_1:77402803-77402822 None:intergenic 35.0%
ATAAGAGTTACCGGGATAAT+AGG + chr7_1:77402802-77402821 Msa1040060:intron 35.0%
TAAGAGTTACCGGGATAATA+GGG + chr7_1:77402803-77402822 Msa1040060:intron 35.0%
TAATGTGTTCCCTATTATCC+CGG - chr7_1:77402815-77402834 None:intergenic 35.0%
!! AGGCACTGAAAAATTACAAC+CGG + chr7_1:77403037-77403056 Msa1040060:intron 35.0%
! TTTTTCTTCAAACCATTGGC+AGG + chr7_1:77403149-77403168 Msa1040060:intron 35.0%
! AAGATTTTTGACCCCATACT+TGG + chr7_1:77403187-77403206 Msa1040060:CDS 35.0%
!! GAAAGGAAGATATTTTGGGA+GGG - chr7_1:77403273-77403292 None:intergenic 35.0%
!! AGAAAGGAAGATATTTTGGG+AGG - chr7_1:77403274-77403293 None:intergenic 35.0%
AAAGGAAATCTATGTACCTG+AGG - chr7_1:77403357-77403376 None:intergenic 35.0%
GAACTCAATGAGGAAATAAG+AGG - chr7_1:77403514-77403533 None:intergenic 35.0%
TAATCAGGAAGAACTCAATG+AGG - chr7_1:77403524-77403543 None:intergenic 35.0%
TTGATGCATATGCAAAGTAG+AGG + chr7_1:77403621-77403640 Msa1040060:intron 35.0%
!!! ACTGATCCACTATTTTTGAG+AGG + chr7_1:77404171-77404190 Msa1040060:intron 35.0%
ACTTCCTTTACTTTGTAGCA+AGG + chr7_1:77404277-77404296 Msa1040060:intron 35.0%
GAAACCTTGCTACAAAGTAA+AGG - chr7_1:77404284-77404303 None:intergenic 35.0%
! TCAAACCGGATTTTATGTAC+TGG - chr7_1:77404509-77404528 None:intergenic 35.0%
ATATGTAATCAGGTGGTGTA+TGG - chr7_1:77404589-77404608 None:intergenic 35.0%
! CAGGGTACTTCATTTGTAAT+TGG + chr7_1:77404769-77404788 Msa1040060:intron 35.0%
GTGAATCAGTAGCAAATGTA+TGG - chr7_1:77404847-77404866 None:intergenic 35.0%
TGAACTAAGCATCAAACCAA+TGG - chr7_1:77404946-77404965 None:intergenic 35.0%
CAGAGTTTGTATAATGAAGG+TGG + chr7_1:77404978-77404997 Msa1040060:intron 35.0%
!!! AATTTTGGGTTCACAATACC+GGG + chr7_1:77405006-77405025 Msa1040060:CDS 35.0%
AATTTAGGAAGACAGCCAAA+GGG - chr7_1:77405032-77405051 None:intergenic 35.0%
TAATTTAGGAAGACAGCCAA+AGG - chr7_1:77405033-77405052 None:intergenic 35.0%
AATTGCACTGTCTCAAAAGA+AGG + chr7_1:77405052-77405071 Msa1040060:CDS 35.0%
AAGAAGGATCTGGATTCATT+TGG + chr7_1:77405068-77405087 Msa1040060:CDS 35.0%
TGTGATGAGGTCATTCTTAA+TGG - chr7_1:77405210-77405229 None:intergenic 35.0%
ATCACAAATGCCACCAAATA+TGG + chr7_1:77405224-77405243 Msa1040060:CDS 35.0%
CTTGCTTGGATTACCATATT+TGG - chr7_1:77405240-77405259 None:intergenic 35.0%
! ATGAGAATAAAGTGCTTGCT+TGG - chr7_1:77405254-77405273 None:intergenic 35.0%
!!! GTTTTAGTTCTAGGTTCCAT+TGG + chr7_1:77405342-77405361 Msa1040060:intron 35.0%
!! CACTCAACAATGTTTTTCAG+AGG - chr7_1:77405448-77405467 None:intergenic 35.0%
CTTGCATCGAAATTATAAGG+TGG - chr7_1:77405567-77405586 None:intergenic 35.0%
! TCATCACAAACTTGATAACC+AGG - chr7_1:77405606-77405625 None:intergenic 35.0%
GGTTATCAAGTTTGTGATGA+AGG + chr7_1:77405606-77405625 Msa1040060:CDS 35.0%
AAGTTTGTGATGAAGGATCA+CGG + chr7_1:77405613-77405632 Msa1040060:CDS 35.0%
! AAGAAACCAAAAGGTATGTG+TGG - chr7_1:77405723-77405742 None:intergenic 35.0%
! TTCTTGGAGAAGTACATAGA+TGG - chr7_1:77405835-77405854 None:intergenic 35.0%
CAACTGAATAAACCTGTTCT+TGG - chr7_1:77405851-77405870 None:intergenic 35.0%
CAAGAACAGGTTTATTCAGT+TGG + chr7_1:77405849-77405868 Msa1040060:three_prime_UTR 35.0%
!! TTTGTTATTTGCCAAAGGAG+AGG + chr7_1:77405937-77405956 Msa1040060:three_prime_UTR 35.0%
!! TTGTTATTTGCCAAAGGAGA+GGG + chr7_1:77405938-77405957 Msa1040060:three_prime_UTR 35.0%
AAAGACAAGATCCGGAACAT+AGG + chr7_1:77400957-77400976 Msa1040060:five_prime_UTR 40.0%
TGGCATTCTCACTTGTTCTA+TGG + chr7_1:77401084-77401103 Msa1040060:CDS 40.0%
TTCCCTGTCAATCTTCCAAA+TGG + chr7_1:77401236-77401255 Msa1040060:CDS 40.0%
GACCATTTGGAAGATTGACA+GGG - chr7_1:77401241-77401260 None:intergenic 40.0%
! TGAAAGAAAGTGCGACCATT+TGG - chr7_1:77401254-77401273 None:intergenic 40.0%
ACTTTCTTTCACAGATCCAC+TGG + chr7_1:77401263-77401282 Msa1040060:CDS 40.0%
TACAGAGAAAGTCGATAACG+AGG - chr7_1:77401307-77401326 None:intergenic 40.0%
TGACATGGCTTCACATGTAT+GGG - chr7_1:77402425-77402444 None:intergenic 40.0%
ATGACATGGCTTCACATGTA+TGG - chr7_1:77402424-77402443 None:intergenic 40.0%
TTTCTGTCAACTTGGATAGC+CGG - chr7_1:77401746-77401765 None:intergenic 40.0%
AATCATGGAGTTTGTGCAGA+TGG - chr7_1:77401813-77401832 None:intergenic 40.0%
AAAAAATCCCTGGGAAACGA+TGG - chr7_1:77401863-77401882 None:intergenic 40.0%
GAGCTCACAAAAAAAATCCC+TGG - chr7_1:77401873-77401892 None:intergenic 40.0%
!! ATTGTGAAGCAGAGCATTGA+CGG + chr7_1:77401991-77402010 Msa1040060:intron 40.0%
TTTGGCATAAGGTGTAGTGA+TGG + chr7_1:77402244-77402263 Msa1040060:intron 40.0%
TTGGCATAAGGTGTAGTGAT+GGG + chr7_1:77402245-77402264 Msa1040060:intron 40.0%
!! GCTACCGGTTCAATTTAACA+GGG - chr7_1:77402380-77402399 None:intergenic 40.0%
ATGACATGGCTTCACATGTA+TGG + chr7_1:77402424-77402443 Msa1040060:intron 40.0%
TGACATGGCTTCACATGTAT+GGG + chr7_1:77402425-77402444 Msa1040060:intron 40.0%
TTGAAGAAAACAGAAACCGC+GGG - chr7_1:77402527-77402546 None:intergenic 40.0%
GACATACCATAAGAGTTACC+GGG + chr7_1:77402794-77402813 Msa1040060:intron 40.0%
!! GCATTTTTGTCGGTTGAGAT+AGG + chr7_1:77402955-77402974 Msa1040060:intron 40.0%
!! CGTCACTCTCTTTTTAGTAC+CGG - chr7_1:77403059-77403078 None:intergenic 40.0%
CGGTACTAAAAAGAGAGTGA+CGG + chr7_1:77403057-77403076 Msa1040060:intron 40.0%
GGTACTAAAAAGAGAGTGAC+GGG + chr7_1:77403058-77403077 Msa1040060:intron 40.0%
GTACTAAAAAGAGAGTGACG+GGG + chr7_1:77403059-77403078 Msa1040060:intron 40.0%
TCTGGATCCACATTCACAAA+TGG + chr7_1:77403218-77403237 Msa1040060:CDS 40.0%
GTTTGCTCCATTTGTGAATG+TGG - chr7_1:77403228-77403247 None:intergenic 40.0%
AAATGGAGCAAACTTTGCAG+TGG + chr7_1:77403235-77403254 Msa1040060:CDS 40.0%
!! AAGATATTTTGGGAGGGTAG+AGG - chr7_1:77403267-77403286 None:intergenic 40.0%
GGAAATAAGAGGAAAATCGG+TGG - chr7_1:77403503-77403522 None:intergenic 40.0%
CGTGTAACTATCATAGCGTT+TGG + chr7_1:77403572-77403591 Msa1040060:intron 40.0%
AAAGTAGAGGAGAGTAAGAC+AGG + chr7_1:77403634-77403653 Msa1040060:intron 40.0%
CAATCAAGTATAGTGCATCC+CGG - chr7_1:77403922-77403941 None:intergenic 40.0%
! TGCGAGTGTTGTAAACCTTT+GGG + chr7_1:77404449-77404468 Msa1040060:intron 40.0%
TAGGAATCAAACTACCCCAA+AGG - chr7_1:77404467-77404486 None:intergenic 40.0%
CACACTGTAACTCATTATCG+TGG + chr7_1:77404555-77404574 Msa1040060:intron 40.0%
AAACTTCTCATGTGTGCATG+AGG - chr7_1:77404695-77404714 None:intergenic 40.0%
GTTTGTATAATGAAGGTGGC+AGG + chr7_1:77404982-77405001 Msa1040060:CDS 40.0%
! ATGAAGGTGGCAGGAAATTT+TGG + chr7_1:77404991-77405010 Msa1040060:CDS 40.0%
! TGAAGGTGGCAGGAAATTTT+GGG + chr7_1:77404992-77405011 Msa1040060:CDS 40.0%
ACTGTCTCAAAAGAAGGATC+TGG + chr7_1:77405058-77405077 Msa1040060:CDS 40.0%
! ATTTGGTGGCATTTGTGATG+AGG - chr7_1:77405223-77405242 None:intergenic 40.0%
GCTTGGATTACCATATTTGG+TGG - chr7_1:77405237-77405256 None:intergenic 40.0%
! TTTTACGTGTTCGCTTCCAA+TGG - chr7_1:77405361-77405380 None:intergenic 40.0%
TTATGAAATCTCTGCTGCAG+TGG + chr7_1:77405403-77405422 Msa1040060:intron 40.0%
AGGTTTCACAAATCCGCTAA+TGG + chr7_1:77405521-77405540 Msa1040060:intron 40.0%
TATTTGCAGCCTCGGTAAAA+TGG - chr7_1:77405659-77405678 None:intergenic 40.0%
TATCCATGTATTTGCAGCCT+CGG - chr7_1:77405667-77405686 None:intergenic 40.0%
CAGTGACAGAAGAAACCAAA+AGG - chr7_1:77405732-77405751 None:intergenic 40.0%
CTATGTACTTCTCCAAGAAC+AGG + chr7_1:77405836-77405855 Msa1040060:three_prime_UTR 40.0%
! CAAAAACACTATCTGGAACC+TGG - chr7_1:77405921-77405940 None:intergenic 40.0%
!! AAGTATGAGTTTTGGCGGTG+TGG + chr7_1:77401064-77401083 Msa1040060:exon 45.0%
! GCTTTGAGTACTGTGAGTAG+TGG + chr7_1:77401137-77401156 Msa1040060:CDS 45.0%
CCAGCAGTAGTATTCGTGTT+CGG + chr7_1:77401170-77401189 Msa1040060:CDS 45.0%
CGACCATTTGGAAGATTGAC+AGG - chr7_1:77401242-77401261 None:intergenic 45.0%
CACAGTGAAGATGAACACGA+AGG - chr7_1:77401539-77401558 None:intergenic 45.0%
AACTTGGATAGCCGGTTATC+AGG - chr7_1:77401738-77401757 None:intergenic 45.0%
TGGGTCAGATCTGGAAATCA+TGG - chr7_1:77401828-77401847 None:intergenic 45.0%
ACGATGGAGAAGAGCAAGAT+GGG - chr7_1:77401847-77401866 None:intergenic 45.0%
AACGATGGAGAAGAGCAAGA+TGG - chr7_1:77401848-77401867 None:intergenic 45.0%
ATAGAGACAGAAAAGGCCAC+CGG - chr7_1:77401968-77401987 None:intergenic 45.0%
AGAGAATTCTTGTGCTGGAC+TGG + chr7_1:77402092-77402111 Msa1040060:intron 45.0%
! TTCTTGTGCTGGACTGGAAT+TGG + chr7_1:77402098-77402117 Msa1040060:intron 45.0%
!! GGCTACCGGTTCAATTTAAC+AGG - chr7_1:77402381-77402400 None:intergenic 45.0%
AAAACAGAAACCGCGGGATA+TGG - chr7_1:77402521-77402540 None:intergenic 45.0%
CGGCATTTGTCAATTGAGCT+AGG - chr7_1:77402563-77402582 None:intergenic 45.0%
!! GACGTCTGGCCTTACAATTT+CGG - chr7_1:77402583-77402602 None:intergenic 45.0%
GAAACTCTCACACACACAAG+TGG + chr7_1:77402899-77402918 Msa1040060:intron 45.0%
GCAAAAATTGCTAGGACCTG+TGG - chr7_1:77402937-77402956 None:intergenic 45.0%
! AAAAGAGAGTGACGGGGAAT+TGG + chr7_1:77403065-77403084 Msa1040060:intron 45.0%
! AAAGAGAGTGACGGGGAATT+GGG + chr7_1:77403066-77403085 Msa1040060:intron 45.0%
TTCAAACTTTGGCCTGCCAA+TGG - chr7_1:77403164-77403183 None:intergenic 45.0%
AGACATGGAGTCCAAGTATG+GGG - chr7_1:77403201-77403220 None:intergenic 45.0%
CAGACATGGAGTCCAAGTAT+GGG - chr7_1:77403202-77403221 None:intergenic 45.0%
TGTGAATGTGGATCCAGACA+TGG - chr7_1:77403216-77403235 None:intergenic 45.0%
!! GGCTACGAGCTTTGAAATGT+TGG - chr7_1:77403322-77403341 None:intergenic 45.0%
CAAACAAGGGTCAGAAGAAC+AGG - chr7_1:77403432-77403451 None:intergenic 45.0%
GGTGTATGCATACTGCTAAG+AGG - chr7_1:77403482-77403501 None:intergenic 45.0%
GATAACTGTTGGGATCCTCT+TGG - chr7_1:77404005-77404024 None:intergenic 45.0%
! GTGCGAGTGTTGTAAACCTT+TGG + chr7_1:77404448-77404467 Msa1040060:intron 45.0%
! GCGAGTGTTGTAAACCTTTG+GGG + chr7_1:77404450-77404469 Msa1040060:intron 45.0%
GTAACTCATTATCGTGGCAG+TGG + chr7_1:77404561-77404580 Msa1040060:intron 45.0%
AATCCGCTAATGGTATGCTG+CGG + chr7_1:77405531-77405550 Msa1040060:CDS 45.0%
TTCGATGCAAGAGTGACATG+CGG + chr7_1:77405576-77405595 Msa1040060:CDS 45.0%
AAGGATCACGGTATGTGAGT+TGG + chr7_1:77405625-77405644 Msa1040060:CDS 45.0%
AGGATCACGGTATGTGAGTT+GGG + chr7_1:77405626-77405645 Msa1040060:CDS 45.0%
! GGATGGAATCCATTTTACCG+AGG + chr7_1:77405647-77405666 Msa1040060:CDS 45.0%
TTACCGAGGCTGCAAATACA+TGG + chr7_1:77405661-77405680 Msa1040060:CDS 45.0%
ACCTGGCAACAATGCAACAT+GGG - chr7_1:77405904-77405923 None:intergenic 45.0%
AACCTGGCAACAATGCAACA+TGG - chr7_1:77405905-77405924 None:intergenic 45.0%
ATTTGCCAAAGGAGAGGGTT+TGG + chr7_1:77405943-77405962 Msa1040060:three_prime_UTR 45.0%
AAACACCAAACCCTCTCCTT+TGG - chr7_1:77405951-77405970 None:intergenic 45.0%
!! ATTAAAACAATAAAATAAAA+TGG + chr7_1:77402350-77402369 Msa1040060:intron 5.0%
! GTGGTGGGAAAGACAAGATC+CGG + chr7_1:77400949-77400968 Msa1040060:five_prime_UTR 50.0%
CCGAACACGAATACTACTGC+TGG - chr7_1:77401173-77401192 None:intergenic 50.0%
! CGTGTTCGGTGATTCGAACT+CGG + chr7_1:77401184-77401203 Msa1040060:CDS 50.0%
CGGTGATTCGAACTCGGATA+CGG + chr7_1:77401190-77401209 Msa1040060:CDS 50.0%
GGTGATTCGAACTCGGATAC+GGG + chr7_1:77401191-77401210 Msa1040060:CDS 50.0%
TCCACTGGTCGTTTGTCTGA+TGG + chr7_1:77401278-77401297 Msa1040060:CDS 50.0%
TCCATCAGACAAACGACCAG+TGG - chr7_1:77401282-77401301 None:intergenic 50.0%
GAAGATGAACACGAAGGCGA+AGG - chr7_1:77401533-77401552 None:intergenic 50.0%
AGAGCAAGATGGGTCAGATC+TGG - chr7_1:77401837-77401856 None:intergenic 50.0%
CTCTTCTCCATCGTTTCCCA+GGG + chr7_1:77401853-77401872 Msa1040060:intron 50.0%
GCAACGTCGCTAGAACAGAT+CGG - chr7_1:77401916-77401935 None:intergenic 50.0%
TTCTAGCGACGTTGCGTTAG+CGG + chr7_1:77401921-77401940 Msa1040060:intron 50.0%
!! ACCGTCTCTGTTGGTAACTC+CGG + chr7_1:77401946-77401965 Msa1040060:intron 50.0%
ACCGGAGTTACCAACAGAGA+CGG - chr7_1:77401950-77401969 None:intergenic 50.0%
!! AGAGCATTGACGGTGGCTAT+CGG + chr7_1:77402001-77402020 Msa1040060:intron 50.0%
!! AGTGATGGGCGATGAAACAC+TGG + chr7_1:77402259-77402278 Msa1040060:intron 50.0%
!! GTGATGGGCGATGAAACACT+GGG + chr7_1:77402260-77402279 Msa1040060:intron 50.0%
ACTCTCACACACACAAGTGG+AGG + chr7_1:77402902-77402921 Msa1040060:intron 50.0%
ACACACACAAGTGGAGGATC+CGG + chr7_1:77402908-77402927 Msa1040060:intron 50.0%
! AAGAGAGTGACGGGGAATTG+GGG + chr7_1:77403067-77403086 Msa1040060:intron 50.0%
CCAGACATGGAGTCCAAGTA+TGG - chr7_1:77403203-77403222 None:intergenic 50.0%
CCATACTTGGACTCCATGTC+TGG + chr7_1:77403200-77403219 Msa1040060:CDS 50.0%
GGAGCAAACTTTGCAGTGGT+TGG + chr7_1:77403239-77403258 Msa1040060:CDS 50.0%
TACCTGAGGTAGCAAGCTGA+AGG - chr7_1:77403343-77403362 None:intergenic 50.0%
TGATCAACGACCAAGGCTTC+CGG + chr7_1:77403900-77403919 Msa1040060:CDS 50.0%
CATACGTGCAAGTCACCAAG+AGG + chr7_1:77403987-77404006 Msa1040060:CDS 50.0%
AAGCCGCAGCATACCATTAG+CGG - chr7_1:77405537-77405556 None:intergenic 50.0%
CTAATGGTATGCTGCGGCTT+TGG + chr7_1:77405537-77405556 Msa1040060:CDS 50.0%
! TCACGGTATGTGAGTTGGGA+TGG + chr7_1:77405630-77405649 Msa1040060:CDS 50.0%
! TCCACGCCACACATACCTTT+TGG + chr7_1:77405714-77405733 Msa1040060:CDS 50.0%
! ACCAAAAGGTATGTGTGGCG+TGG - chr7_1:77405718-77405737 None:intergenic 50.0%
GCAACAATGCAACATGGGTC+AGG - chr7_1:77405899-77405918 None:intergenic 50.0%
ACCCATGTTGCATTGTTGCC+AGG + chr7_1:77405900-77405919 Msa1040060:three_prime_UTR 50.0%
GATTCGAACTCGGATACGGG+TGG + chr7_1:77401194-77401213 Msa1040060:CDS 55.0%
! GATACGGGTGGACTCGTTTC+AGG + chr7_1:77401206-77401225 Msa1040060:CDS 55.0%
! GGTGGACTCGTTTCAGGACT+CGG + chr7_1:77401212-77401231 Msa1040060:CDS 55.0%
GCTCTTCTCCATCGTTTCCC+AGG + chr7_1:77401852-77401871 Msa1040060:intron 55.0%
GGAGTTACCAACAGAGACGG+TGG - chr7_1:77401947-77401966 None:intergenic 55.0%
!! GTCTCTGTTGGTAACTCCGG+TGG + chr7_1:77401949-77401968 Msa1040060:intron 55.0%
!! GTGAAGCAGAGCATTGACGG+TGG + chr7_1:77401994-77402013 Msa1040060:intron 55.0%
GCGGGATATGGACCCGTAAT+GGG - chr7_1:77402509-77402528 None:intergenic 55.0%
CATTACGGGTCCATATCCCG+CGG + chr7_1:77402508-77402527 Msa1040060:intron 55.0%
TAAGGCCAGACGTCGTAACG+CGG + chr7_1:77402589-77402608 Msa1040060:intron 55.0%
TTGCTAGGACCTGTGGACAC+CGG - chr7_1:77402930-77402949 None:intergenic 55.0%
!! AGCCTTCAGCTTGCTACCTC+AGG + chr7_1:77403338-77403357 Msa1040060:CDS 55.0%
GATCAACGACCAAGGCTTCC+GGG + chr7_1:77403901-77403920 Msa1040060:CDS 55.0%
ATAGTGCATCCCGGAAGCCT+TGG - chr7_1:77403913-77403932 None:intergenic 55.0%
GTTCACAATACCGGGCCCTT+TGG + chr7_1:77405014-77405033 Msa1040060:CDS 55.0%
! ATGGTATGCTGCGGCTTTGG+AGG + chr7_1:77405540-77405559 Msa1040060:CDS 55.0%
!! TGGTATGCTGCGGCTTTGGA+GGG + chr7_1:77405541-77405560 Msa1040060:CDS 55.0%
AGAGTGACATGCGGTCAACC+TGG + chr7_1:77405585-77405604 Msa1040060:CDS 55.0%
GAACACGAAGGCGAAGGCGA+AGG - chr7_1:77401527-77401546 None:intergenic 60.0%
TTAGCGGCCACCGTCTCTGT+TGG + chr7_1:77401937-77401956 Msa1040060:intron 60.0%
CGCGGGATATGGACCCGTAA+TGG - chr7_1:77402510-77402529 None:intergenic 60.0%
AAGGCCAGACGTCGTAACGC+GGG + chr7_1:77402590-77402609 Msa1040060:intron 60.0%
AGTTCCCGCGTTACGACGTC+TGG - chr7_1:77402597-77402616 None:intergenic 60.0%
AGGAAGACAGCCAAAGGGCC+CGG - chr7_1:77405027-77405046 None:intergenic 60.0%
GAAGGCGAAGGCGGAGGATG+TGG - chr7_1:77401509-77401528 None:intergenic 65.0%
GAAGGCGAAGGCGAAGGCGA+AGG - chr7_1:77401521-77401540 None:intergenic 65.0%
GTGGAGGATCCGGTGTCCAC+AGG + chr7_1:77402918-77402937 Msa1040060:intron 65.0%
GAAGGCGAAGGCGAAGGCGG+AGG - chr7_1:77401515-77401534 None:intergenic 70.0%
GGCGAAGGCGAAGGCGAAGG+CGG - chr7_1:77401518-77401537 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 77400942 77406192 77400942 ID=Msa1040060;Name=Msa1040060
chr7_1 mRNA 77400942 77406192 77400942 ID=Msa1040060-mRNA-1;Parent=Msa1040060;Name=Msa1040060-mRNA-1;_AED=0.11;_eAED=0.11;_QI=126|1|1|1|1|1|5|440|366
chr7_1 exon 77400942 77401323 77400942 ID=Msa1040060-mRNA-1:exon:20376;Parent=Msa1040060-mRNA-1
chr7_1 exon 77403171 77403359 77403171 ID=Msa1040060-mRNA-1:exon:20377;Parent=Msa1040060-mRNA-1
chr7_1 exon 77403888 77404048 77403888 ID=Msa1040060-mRNA-1:exon:20378;Parent=Msa1040060-mRNA-1
chr7_1 exon 77404981 77405245 77404981 ID=Msa1040060-mRNA-1:exon:20379;Parent=Msa1040060-mRNA-1
chr7_1 exon 77405523 77406192 77405523 ID=Msa1040060-mRNA-1:exon:20380;Parent=Msa1040060-mRNA-1
chr7_1 five_prime_UTR 77400942 77401067 77400942 ID=Msa1040060-mRNA-1:five_prime_utr;Parent=Msa1040060-mRNA-1
chr7_1 CDS 77401068 77401323 77401068 ID=Msa1040060-mRNA-1:cds;Parent=Msa1040060-mRNA-1
chr7_1 CDS 77403171 77403359 77403171 ID=Msa1040060-mRNA-1:cds;Parent=Msa1040060-mRNA-1
chr7_1 CDS 77403888 77404048 77403888 ID=Msa1040060-mRNA-1:cds;Parent=Msa1040060-mRNA-1
chr7_1 CDS 77404981 77405245 77404981 ID=Msa1040060-mRNA-1:cds;Parent=Msa1040060-mRNA-1
chr7_1 CDS 77405523 77405752 77405523 ID=Msa1040060-mRNA-1:cds;Parent=Msa1040060-mRNA-1
chr7_1 three_prime_UTR 77405753 77406192 77405753 ID=Msa1040060-mRNA-1:three_prime_utr;Parent=Msa1040060-mRNA-1
Gene Sequence

>Msa1040060

ATGAGTTTTGGCGGTGTGGCATTCTCACTTGTTCTATGGATATCTATCTTCTCTTCTTCTTTTTCTTTAGCTTTGAGTACTGTGAGTAGTGGATGCAGTAAACCAGCAGTAGTATTCGTGTTCGGTGATTCGAACTCGGATACGGGTGGACTCGTTTCAGGACTCGGTTTCCCTGTCAATCTTCCAAATGGTCGCACTTTCTTTCACAGATCCACTGGTCGTTTGTCTGATGGACGCCTCGTTATCGACTTTCTCTGCCAAAGTTTGAATACAAGATTTTTGACCCCATACTTGGACTCCATGTCTGGATCCACATTCACAAATGGAGCAAACTTTGCAGTGGTTGGATCCTCTACCCTCCCAAAATATCTTCCTTTCTCTTTAAATATACAGGTCATGCAGTTCCAACATTTCAAAGCTCGTAGCCTTCAGCTTGCTACCTCAGGTGCAAAAAATATGATCAACGACCAAGGCTTCCGGGATGCACTATACTTGATTGATATTGGACAAAATGACCTTGCTGATTCATTTACCAAAAATCTATCATACGTGCAAGTCACCAAGAGGATCCCAACAGTTATCACTGAAATTGAGAATGCTGTTAAGAGTTTGTATAATGAAGGTGGCAGGAAATTTTGGGTTCACAATACCGGGCCCTTTGGCTGTCTTCCTAAATTAATTGCACTGTCTCAAAAGAAGGATCTGGATTCATTTGGATGTCTTTCTAGTTACAATTCTGCTGCTAGATTGTTTAACGAAGCACTTTATCATTCGAGTCAGAAATTAAGAACTGAATTGAAGGATGCTACCTTAGTCTATGTTGATATTTATGCCATTAAGAATGACCTCATCACAAATGCCACCAAATATGGTTTCACAAATCCGCTAATGGTATGCTGCGGCTTTGGAGGGCCACCTTATAATTTCGATGCAAGAGTGACATGCGGTCAACCTGGTTATCAAGTTTGTGATGAAGGATCACGGTATGTGAGTTGGGATGGAATCCATTTTACCGAGGCTGCAAATACATGGATAGCTTCAAAGATACTTTCGACAGCTTATTCCACGCCACACATACCTTTTGGTTTCTTCTGTCACTGA
Protein sequence

>Msa1040060

MSFGGVAFSLVLWISIFSSSFSLALSTVSSGCSKPAVVFVFGDSNSDTGGLVSGLGFPVNLPNGRTFFHRSTGRLSDGRLVIDFLCQSLNTRFLTPYLDSMSGSTFTNGANFAVVGSSTLPKYLPFSLNIQVMQFQHFKARSLQLATSGAKNMINDQGFRDALYLIDIGQNDLADSFTKNLSYVQVTKRIPTVITEIENAVKSLYNEGGRKFWVHNTGPFGCLPKLIALSQKKDLDSFGCLSSYNSAARLFNEALYHSSQKLRTELKDATLVYVDIYAIKNDLITNATKYGFTNPLMVCCGFGGPPYNFDARVTCGQPGYQVCDEGSRYVSWDGIHFTEAANTWIASKILSTAYSTPHIPFGFFCH*