Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040640 | AES82275.2 | 99.324 | 296 | 2 | 0 | 1 | 296 | 114 | 409 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040640 | sp|A2RVR7|MTRF1_ARATH | 77.703 | 296 | 66 | 0 | 1 | 296 | 118 | 413 | 5.35e-172 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040640 | G7KUL3 | 99.324 | 296 | 2 | 0 | 1 | 296 | 114 | 409 | 0.0 | 609 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1040640 | Msa1082890 | 0.935620 | 6.361540e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040640 | MtrunA17_Chr7g0270701 | 99.324 | 296 | 2 | 0 | 1 | 296 | 114 | 409 | 0.0 | 609 |
| Msa1040640 | MtrunA17_Chr7g0268791 | 45.490 | 255 | 139 | 0 | 3 | 257 | 120 | 374 | 3.04e-72 | 228 |
| Msa1040640 | MtrunA17_Chr7g0271771 | 37.801 | 291 | 160 | 10 | 6 | 281 | 180 | 464 | 8.77e-49 | 168 |
| Msa1040640 | MtrunA17_Chr7g0249581 | 34.138 | 290 | 171 | 8 | 6 | 281 | 174 | 457 | 4.93e-34 | 129 |
| Msa1040640 | MtrunA17_Chr1g0172361 | 29.412 | 238 | 161 | 4 | 35 | 270 | 174 | 406 | 4.16e-15 | 75.1 |
| Msa1040640 | MtrunA17_Chr6g0476981 | 54.167 | 48 | 22 | 0 | 162 | 209 | 116 | 163 | 7.14e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040640 | AT2G47020.4 | 77.703 | 296 | 66 | 0 | 1 | 296 | 53 | 348 | 3.47e-174 | 485 |
| Msa1040640 | AT2G47020.1 | 77.703 | 296 | 66 | 0 | 1 | 296 | 118 | 413 | 5.44e-173 | 485 |
| Msa1040640 | AT2G47020.3 | 71.429 | 322 | 66 | 1 | 1 | 296 | 118 | 439 | 3.46e-167 | 471 |
| Msa1040640 | AT2G47020.5 | 76.000 | 200 | 48 | 0 | 1 | 200 | 118 | 317 | 3.30e-109 | 320 |
| Msa1040640 | AT3G62910.1 | 42.908 | 282 | 145 | 3 | 3 | 281 | 123 | 391 | 2.04e-77 | 242 |
| Msa1040640 | AT2G47020.2 | 74.510 | 153 | 39 | 0 | 1 | 153 | 118 | 270 | 3.69e-76 | 234 |
| Msa1040640 | AT1G56350.1 | 37.024 | 289 | 165 | 7 | 6 | 281 | 187 | 471 | 2.13e-48 | 168 |
| Msa1040640 | AT5G36170.2 | 34.043 | 282 | 178 | 6 | 5 | 281 | 163 | 441 | 5.12e-39 | 142 |
| Msa1040640 | AT5G36170.1 | 34.043 | 282 | 178 | 6 | 5 | 281 | 164 | 442 | 5.83e-39 | 142 |
| Msa1040640 | AT5G36170.4 | 32.474 | 194 | 126 | 3 | 5 | 194 | 163 | 355 | 1.46e-25 | 105 |
| Msa1040640 | AT5G36170.3 | 32.474 | 194 | 126 | 3 | 5 | 194 | 164 | 356 | 1.48e-25 | 105 |
Find 77 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTCACTTCCGAATTTC+CGG | 0.193573 | 7_1:-78035739 | Msa1040640:five_prime_UTR |
| AACAGATCCGGTGATATTTC+AGG | 0.234503 | 7_1:+78035607 | None:intergenic |
| CAGTTTCCTTTCTTCCTCTA+TGG | 0.235024 | 7_1:+78034266 | None:intergenic |
| TTCTATAGATCCGGTGGTTC+AGG | 0.263634 | 7_1:-78033002 | Msa1040640:CDS |
| ACCGGATCTGTTAAATATAA+TGG | 0.276498 | 7_1:-78035596 | Msa1040640:five_prime_UTR |
| CGTTTCGGCTAAGCTGAAAA+TGG | 0.288717 | 7_1:+78035939 | None:intergenic |
| CGGTTTCGTCTTTACTCTTC+CGG | 0.293909 | 7_1:-78035719 | Msa1040640:intron |
| TACTCTGACTGAGACGTTTC+TGG | 0.297740 | 7_1:+78035413 | None:intergenic |
| AGACAAAGACATGCTAAATA+TGG | 0.324341 | 7_1:-78034310 | Msa1040640:CDS |
| TCTTGATAATCTTATTAATC+AGG | 0.333963 | 7_1:-78035536 | Msa1040640:intron |
| TAAAGACGAAACCGGAAATT+CGG | 0.355429 | 7_1:+78035728 | None:intergenic |
| ACATGATAATTACATACATT+TGG | 0.357990 | 7_1:-78031634 | Msa1040640:three_prime_UTR |
| TGCAGGCACTGGTGGGGAGG+AGG | 0.376498 | 7_1:-78033994 | Msa1040640:intron |
| GTTCAAAATTACCTTCTGTT+TGG | 0.381411 | 7_1:+78035325 | None:intergenic |
| TCCTTTCTTCCTCTATGGCC+TGG | 0.384019 | 7_1:+78034271 | None:intergenic |
| TACCATCTGCAGGAAATTGA+TGG | 0.386920 | 7_1:-78034363 | Msa1040640:intron |
| TGATGAAAGAGATTGCATTT+TGG | 0.392141 | 7_1:-78034202 | Msa1040640:CDS |
| TCCATTATATTTAACAGATC+CGG | 0.397333 | 7_1:+78035595 | None:intergenic |
| CATGCTAAATATGGCAATAG+AGG | 0.402497 | 7_1:-78034301 | Msa1040640:CDS |
| AGAATGACTCACATTCCAAC+TGG | 0.414670 | 7_1:-78032945 | Msa1040640:CDS |
| AAAATTGATTTCTATAGATC+CGG | 0.417665 | 7_1:-78033011 | Msa1040640:CDS |
| TTCCGTTGCGATTCTCCCAC+AGG | 0.420365 | 7_1:-78033358 | Msa1040640:CDS |
| CTTTCATCAGCATCATCCTT+AGG | 0.423814 | 7_1:+78034216 | None:intergenic |
| TCTTCTTCTTAAAGAAGAAA+TGG | 0.429187 | 7_1:-78031828 | Msa1040640:CDS |
| GCAACTTATTAATCAATTGA+AGG | 0.431077 | 7_1:-78035348 | Msa1040640:five_prime_UTR |
| ACACAGTACCTTGAGAGCTT+TGG | 0.439461 | 7_1:+78032153 | None:intergenic |
| ATCTGATATGAAGGGATTCA+AGG | 0.449262 | 7_1:-78033799 | Msa1040640:intron |
| CAAATTGTACAGATCGGTAG+TGG | 0.449947 | 7_1:-78031980 | Msa1040640:intron |
| TATAGCTCAATCTGATATGA+AGG | 0.454121 | 7_1:-78033808 | Msa1040640:CDS |
| CTTGAGGAAAGTTGTATGTT+CGG | 0.461744 | 7_1:+78031939 | None:intergenic |
| AGATGAGCGTTCTCAGCATA+TGG | 0.481437 | 7_1:-78032904 | Msa1040640:intron |
| GAAATTCGGAAGTGAGAGTT+CGG | 0.492224 | 7_1:+78035742 | None:intergenic |
| GCTGAAGTCATTACTTCCTA+AGG | 0.497967 | 7_1:-78034232 | Msa1040640:CDS |
| GCCAGGCCATAGAGGAAGAA+AGG | 0.502842 | 7_1:-78034272 | Msa1040640:CDS |
| CGTTCTTCTACGTAATTCAG+TGG | 0.505051 | 7_1:-78031788 | Msa1040640:exon |
| TTATTCTGTTCGAGATGCTA+GGG | 0.509114 | 7_1:-78031695 | Msa1040640:three_prime_UTR |
| AGTATGCTCACAACAAAGGC+TGG | 0.515594 | 7_1:-78033848 | Msa1040640:CDS |
| GTTATTCTGTTCGAGATGCT+AGG | 0.520162 | 7_1:-78031696 | Msa1040640:three_prime_UTR |
| GAATAAAGCCAAAGCTCTCA+AGG | 0.523351 | 7_1:-78032161 | Msa1040640:CDS |
| GATTCTCTGCTATTAAGCAC+AGG | 0.526234 | 7_1:-78035567 | Msa1040640:five_prime_UTR |
| AGAGTATGCAAGAGCTAACA+AGG | 0.527690 | 7_1:-78035396 | Msa1040640:five_prime_UTR |
| GGCAATAGAGGAAATGAGCC+AGG | 0.528409 | 7_1:-78034289 | Msa1040640:CDS |
| CAGTTCAGTGTGTGAAAGAG+AGG | 0.530767 | 7_1:-78035844 | Msa1040640:five_prime_UTR |
| GGAAATGAGCCAGGCCATAG+AGG | 0.537832 | 7_1:-78034280 | Msa1040640:CDS |
| ATGCTGACCACCTGAACCAC+CGG | 0.538846 | 7_1:+78032992 | None:intergenic |
| CGGAAGAGTAAAGACGAAAC+CGG | 0.540382 | 7_1:+78035720 | None:intergenic |
| GAGTGGAATTCATAGAGTAC+AGG | 0.544385 | 7_1:-78033504 | Msa1040640:intron |
| GGGAAACTAAAATTTGAGAG+TGG | 0.547551 | 7_1:-78033521 | Msa1040640:CDS |
| TAATTACCTCATCAGCCTGT+GGG | 0.550923 | 7_1:+78033343 | None:intergenic |
| GTTCTTCTACGTAATTCAGT+GGG | 0.554789 | 7_1:-78031787 | Msa1040640:exon |
| AAGAAGAAGAGCATCAATGA+AGG | 0.557042 | 7_1:+78031841 | None:intergenic |
| CGTGTAACTGATCATAGAGT+TGG | 0.576242 | 7_1:-78031914 | Msa1040640:CDS |
| AAAGATATTCATTGCAAACA+AGG | 0.584561 | 7_1:+78033968 | None:intergenic |
| TCAATTGAAGGCCAAACAGA+AGG | 0.589477 | 7_1:-78035336 | Msa1040640:intron |
| ATCAAAGCTTCGATCAGACC+AGG | 0.593666 | 7_1:-78032086 | Msa1040640:intron |
| AATCGCAACGGAAACAGCAC+TGG | 0.594367 | 7_1:+78033368 | None:intergenic |
| AAATTGTACAGATCGGTAGT+GGG | 0.595903 | 7_1:-78031979 | Msa1040640:intron |
| TTAATTACCTCATCAGCCTG+TGG | 0.596975 | 7_1:+78033342 | None:intergenic |
| AACATAGACGATGTGATGCA+AGG | 0.597991 | 7_1:-78031878 | Msa1040640:CDS |
| TATAGATCCGGTGGTTCAGG+TGG | 0.600047 | 7_1:-78032999 | Msa1040640:CDS |
| CTGTTCGAGATGCTAGGGAG+AGG | 0.600282 | 7_1:-78031690 | Msa1040640:three_prime_UTR |
| ATAGCAATCACGATCCCAGT+TGG | 0.611104 | 7_1:+78032930 | None:intergenic |
| ATTGATTTCTATAGATCCGG+TGG | 0.614792 | 7_1:-78033008 | Msa1040640:CDS |
| ATAGCTCAATCTGATATGAA+GGG | 0.616699 | 7_1:-78033807 | Msa1040640:CDS |
| AGTGGAACCTGAAATATCAC+CGG | 0.627145 | 7_1:-78035614 | Msa1040640:five_prime_UTR |
| GATTCTCCCACAGGCTGATG+AGG | 0.629066 | 7_1:-78033349 | Msa1040640:intron |
| TGATCAGTTACACGGCCTTG+AGG | 0.631260 | 7_1:+78031923 | None:intergenic |
| CAACTCTATGATCAGTTACA+CGG | 0.632031 | 7_1:+78031915 | None:intergenic |
| CGAACATACAACTTTCCTCA+AGG | 0.648494 | 7_1:-78031938 | Msa1040640:CDS |
| ATTCTCTGCTATTAAGCACA+GGG | 0.649059 | 7_1:-78035566 | Msa1040640:five_prime_UTR |
| AGCCTGTGGGAGAATCGCAA+CGG | 0.653810 | 7_1:+78033356 | None:intergenic |
| GAGAAGTATGCTCACAACAA+AGG | 0.658749 | 7_1:-78033852 | Msa1040640:CDS |
| GAATGACTCACATTCCAACT+GGG | 0.661685 | 7_1:-78032944 | Msa1040640:CDS |
| AATTGTACAGATCGGTAGTG+GGG | 0.669973 | 7_1:-78031978 | Msa1040640:intron |
| CAAAGGCTGGAAGTTTGATG+TGG | 0.672649 | 7_1:-78033835 | Msa1040640:CDS |
| GGAGTTTGGAATGCATACAA+TGG | 0.694935 | 7_1:+78031534 | None:intergenic |
| AAGGAGCTTCGAAAGCTCAG+TGG | 0.714146 | 7_1:-78035377 | Msa1040640:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATAATAATGATTCAA+TGG | - | chr7_1:78032005-78032024 | Msa1040640:intron | 10.0% |
| !! | AAAAAAATAGTAAAAGAATA+AGG | - | chr7_1:78033075-78033094 | Msa1040640:intron | 10.0% |
| !! | AGACAAAAAAAAAAAAAAAA+CGG | + | chr7_1:78033881-78033900 | None:intergenic | 10.0% |
| !! | TAAAAAAAAATGAGGATTAA+TGG | - | chr7_1:78031677-78031696 | Msa1040640:three_prime_UTR | 15.0% |
| !!! | ATAAATAGATTGATTCAAAT+CGG | + | chr7_1:78031812-78031831 | None:intergenic | 15.0% |
| !! | TAAATTTATCCTTCATATAA+GGG | - | chr7_1:78032571-78032590 | Msa1040640:intron | 15.0% |
| !! | TAAGTTAAATTTAAGCAATT+AGG | - | chr7_1:78032923-78032942 | Msa1040640:CDS | 15.0% |
| !! | TTGTATAAACAAATGAAAAT+GGG | + | chr7_1:78033481-78033500 | None:intergenic | 15.0% |
| !! | ATTGTATAAACAAATGAAAA+TGG | + | chr7_1:78033482-78033501 | None:intergenic | 15.0% |
| !!! | AACTAACTCATAAAAATTTT+CGG | - | chr7_1:78034721-78034740 | Msa1040640:intron | 15.0% |
| !!! | AATAATTTTGATAACAGAAG+TGG | - | chr7_1:78031866-78031885 | Msa1040640:CDS | 20.0% |
| !!! | TCTTGATAATCTTATTAATC+AGG | - | chr7_1:78031962-78031981 | Msa1040640:CDS | 20.0% |
| !!! | TTAAAATTGAAAGTATTGTG+TGG | - | chr7_1:78032524-78032543 | Msa1040640:intron | 20.0% |
| !! | CTAAATTTATCCTTCATATA+AGG | - | chr7_1:78032570-78032589 | Msa1040640:intron | 20.0% |
| !! | AAATTTATCCTTCATATAAG+GGG | - | chr7_1:78032572-78032591 | Msa1040640:intron | 20.0% |
| !! | TTTGTTAAACATATATGCTT+AGG | + | chr7_1:78032645-78032664 | None:intergenic | 20.0% |
| !!! | GATTTATTTACCATGTATTT+TGG | - | chr7_1:78032851-78032870 | Msa1040640:intron | 20.0% |
| !!! | ATTTGTTTATACAATTTTGC+AGG | - | chr7_1:78033487-78033506 | Msa1040640:intron | 20.0% |
| !!! | ATGAATATCTTTAAGATGTA+AGG | - | chr7_1:78033541-78033560 | Msa1040640:CDS | 20.0% |
| !! | CAAAAAAAAAAAAAAAACGG+TGG | + | chr7_1:78033878-78033897 | None:intergenic | 20.0% |
| !! | ATAAAAAGAATGTCACTAAT+GGG | + | chr7_1:78034067-78034086 | None:intergenic | 20.0% |
| !! | AATAAAAAGAATGTCACTAA+TGG | + | chr7_1:78034068-78034087 | None:intergenic | 20.0% |
| !! | GTAATTAATAAATACCCTTA+TGG | - | chr7_1:78034171-78034190 | Msa1040640:intron | 20.0% |
| !!! | TTTTTATTTTATCGCTATTC+TGG | + | chr7_1:78034273-78034292 | None:intergenic | 20.0% |
| !! | GATTGTAAAAGATATTAAAC+AGG | + | chr7_1:78034383-78034402 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTCTATAGATC+CGG | - | chr7_1:78034487-78034506 | Msa1040640:intron | 20.0% |
| !!! | AAATTTTTATGAGTTAGTTG+TGG | + | chr7_1:78034720-78034739 | None:intergenic | 20.0% |
| !! | ACATGATAATTACATACATT+TGG | - | chr7_1:78035864-78035883 | Msa1040640:five_prime_UTR | 20.0% |
| ! | AAGAGAGGTAAAAAAAAATG+AGG | - | chr7_1:78031669-78031688 | Msa1040640:three_prime_UTR | 25.0% |
| ! | TCCATTATATTTAACAGATC+CGG | + | chr7_1:78031906-78031925 | None:intergenic | 25.0% |
| ! | GCAACTTATTAATCAATTGA+AGG | - | chr7_1:78032150-78032169 | Msa1040640:CDS | 25.0% |
| ! | TCATTTACTCAAATGATTAC+TGG | + | chr7_1:78032247-78032266 | None:intergenic | 25.0% |
| ! | ATGATATTCAGCTAATGATT+TGG | - | chr7_1:78032434-78032453 | Msa1040640:intron | 25.0% |
| ! | ATTCTTCAACAGAAAATAAG+TGG | + | chr7_1:78032490-78032509 | None:intergenic | 25.0% |
| ! | AATTTATCCTTCATATAAGG+GGG | - | chr7_1:78032573-78032592 | Msa1040640:intron | 25.0% |
| !!! | ATTTTTTTTCTGTCTTTAGG+TGG | - | chr7_1:78032801-78032820 | Msa1040640:intron | 25.0% |
| ! | ACATGGTAAATAAATCACAT+AGG | + | chr7_1:78032847-78032866 | None:intergenic | 25.0% |
| !!! | AGTTCTAGAAATAAGATTGA+AGG | - | chr7_1:78032874-78032893 | Msa1040640:intron | 25.0% |
| !! | ATTGAAGGTGTACATAATAT+TGG | - | chr7_1:78032889-78032908 | Msa1040640:intron | 25.0% |
| ! | TAAATTATCACTGTTGAAGA+TGG | - | chr7_1:78033332-78033351 | Msa1040640:intron | 25.0% |
| !! | TGGGAATAAAAAAAAGTGTA+GGG | + | chr7_1:78033462-78033481 | None:intergenic | 25.0% |
| !! | ATGGGAATAAAAAAAAGTGT+AGG | + | chr7_1:78033463-78033482 | None:intergenic | 25.0% |
| ! | AAAGATATTCATTGCAAACA+AGG | + | chr7_1:78033533-78033552 | None:intergenic | 25.0% |
| ! | CTATAAATGGAAGGAAAAAA+CGG | + | chr7_1:78033849-78033868 | None:intergenic | 25.0% |
| !!! | TACTTGATGTATTTTTGCTT+TGG | - | chr7_1:78033903-78033922 | Msa1040640:intron | 25.0% |
| ! | AAGAAGAGAAATATAGAACA+GGG | + | chr7_1:78035266-78035285 | None:intergenic | 25.0% |
| ! | AAAGAAGAGAAATATAGAAC+AGG | + | chr7_1:78035267-78035286 | None:intergenic | 25.0% |
| ! | AAGTTTCAAATTGTACAGAT+CGG | - | chr7_1:78035512-78035531 | Msa1040640:intron | 25.0% |
| ! | TCTTCTTCTTAAAGAAGAAA+TGG | - | chr7_1:78035670-78035689 | Msa1040640:intron | 25.0% |
| ACCGGATCTGTTAAATATAA+TGG | - | chr7_1:78031902-78031921 | Msa1040640:CDS | 30.0% | |
| GTTCAAAATTACCTTCTGTT+TGG | + | chr7_1:78032176-78032195 | None:intergenic | 30.0% | |
| ! | GGTAATTTTGAACAGTGAAA+TGG | - | chr7_1:78032183-78032202 | Msa1040640:intron | 30.0% |
| ! | TTGACTGTAATCACATGTTT+TGG | - | chr7_1:78032276-78032295 | Msa1040640:intron | 30.0% |
| AAAATGTTGTGTAAGTGTCT+TGG | - | chr7_1:78032365-78032384 | Msa1040640:intron | 30.0% | |
| AAATGTTGTGTAAGTGTCTT+GGG | - | chr7_1:78032366-78032385 | Msa1040640:intron | 30.0% | |
| CTTTACCAAAATAAGATAGC+CGG | + | chr7_1:78032465-78032484 | None:intergenic | 30.0% | |
| !!! | GGCTATCTTATTTTGGTAAA+GGG | - | chr7_1:78032464-78032483 | Msa1040640:intron | 30.0% |
| ATTTATCCTTCATATAAGGG+GGG | - | chr7_1:78032574-78032593 | Msa1040640:intron | 30.0% | |
| AAGACAGAAAAAAAATGCCA+TGG | + | chr7_1:78032797-78032816 | None:intergenic | 30.0% | |
| !!! | GGCATTTTTTTTCTGTCTTT+AGG | - | chr7_1:78032798-78032817 | Msa1040640:intron | 30.0% |
| !! | TTCTAGAACTCCAAAATACA+TGG | + | chr7_1:78032864-78032883 | None:intergenic | 30.0% |
| TAGTAAAAGAATAAGGCTGT+CGG | - | chr7_1:78033082-78033101 | Msa1040640:intron | 30.0% | |
| AGACAAAGACATGCTAAATA+TGG | - | chr7_1:78033188-78033207 | Msa1040640:intron | 30.0% | |
| ! | TGATGAAAGAGATTGCATTT+TGG | - | chr7_1:78033296-78033315 | Msa1040640:intron | 30.0% |
| AAAAAAGCAAAACGATCAAC+AGG | + | chr7_1:78033421-78033440 | None:intergenic | 30.0% | |
| TAAGGCTACACTTTATACTT+GGG | - | chr7_1:78033559-78033578 | Msa1040640:CDS | 30.0% | |
| GATACTATCTTGCAAAATGT+AGG | - | chr7_1:78033620-78033639 | Msa1040640:intron | 30.0% | |
| TATAGCTCAATCTGATATGA+AGG | - | chr7_1:78033690-78033709 | Msa1040640:intron | 30.0% | |
| ATAGCTCAATCTGATATGAA+GGG | - | chr7_1:78033691-78033710 | Msa1040640:intron | 30.0% | |
| !!! | ATTTTAGGAGTTGGTGTTTT+TGG | - | chr7_1:78033956-78033975 | Msa1040640:intron | 30.0% |
| !!! | TTTTAGGAGTTGGTGTTTTT+GGG | - | chr7_1:78033957-78033976 | Msa1040640:intron | 30.0% |
| ATTCATAGATTTGATGTGAG+AGG | + | chr7_1:78034032-78034051 | None:intergenic | 30.0% | |
| ! | CATTCAAGTTTCATATCACA+AGG | + | chr7_1:78034204-78034223 | None:intergenic | 30.0% |
| GATAGAAGTTGCATTTGTAT+GGG | + | chr7_1:78034309-78034328 | None:intergenic | 30.0% | |
| AGATAGAAGTTGCATTTGTA+TGG | + | chr7_1:78034310-78034329 | None:intergenic | 30.0% | |
| AAATGCAACTTCTATCTTTC+TGG | - | chr7_1:78034313-78034332 | Msa1040640:CDS | 30.0% | |
| AATGCAACTTCTATCTTTCT+GGG | - | chr7_1:78034314-78034333 | Msa1040640:CDS | 30.0% | |
| ! | GTTGATGAATGGAATTTCAA+AGG | - | chr7_1:78034357-78034376 | Msa1040640:intron | 30.0% |
| TATGGTAAATGACTCCAAAA+TGG | - | chr7_1:78034612-78034631 | Msa1040640:intron | 30.0% | |
| !!! | ACATGTAAATTGTGCCATTT+TGG | + | chr7_1:78034629-78034648 | None:intergenic | 30.0% |
| TTGTAGCACTACTAATAACA+TGG | + | chr7_1:78034752-78034771 | None:intergenic | 30.0% | |
| TGTATACTTAAAGTGACACA+TGG | - | chr7_1:78034859-78034878 | Msa1040640:intron | 30.0% | |
| TTTGTGTTCATTCATATGTG+TGG | - | chr7_1:78035041-78035060 | Msa1040640:intron | 30.0% | |
| AATATCTTGGACAACTGAAA+CGG | + | chr7_1:78035170-78035189 | None:intergenic | 30.0% | |
| CAAAATAATAAAGTCATCGC+AGG | + | chr7_1:78035239-78035258 | None:intergenic | 30.0% | |
| ! | CTGCGATGACTTTATTATTT+TGG | - | chr7_1:78035237-78035256 | Msa1040640:intron | 30.0% |
| !!! | TTTTTTCCCTTCTTTTCTTC+TGG | - | chr7_1:78035483-78035502 | Msa1040640:intron | 30.0% |
| !!! | TCTAAGCTTTTTTCGCGTTT+CGG | + | chr7_1:78031577-78031596 | None:intergenic | 35.0% |
| TCAACAAAAATCTTCGACTG+AGG | + | chr7_1:78031621-78031640 | None:intergenic | 35.0% | |
| TAAAGACGAAACCGGAAATT+CGG | + | chr7_1:78031773-78031792 | None:intergenic | 35.0% | |
| GATTCAAATCGGAAAGTTAC+CGG | + | chr7_1:78031801-78031820 | None:intergenic | 35.0% | |
| ATTCTCTGCTATTAAGCACA+GGG | - | chr7_1:78031932-78031951 | Msa1040640:CDS | 35.0% | |
| !!! | CGGCTATCTTATTTTGGTAA+AGG | - | chr7_1:78032463-78032482 | Msa1040640:intron | 35.0% |
| TGTGTGGCTTAAGTTTAGAT+TGG | - | chr7_1:78032540-78032559 | Msa1040640:intron | 35.0% | |
| CCATGTCATGAACTAAATCT+TGG | + | chr7_1:78032708-78032727 | None:intergenic | 35.0% | |
| ! | CCAAGATTTAGTTCATGACA+TGG | - | chr7_1:78032705-78032724 | Msa1040640:intron | 35.0% |
| GTAAGTTGTGCTATGCTTTA+CGG | + | chr7_1:78032953-78032972 | None:intergenic | 35.0% | |
| CTTACAATGCCGAAATTGTT+AGG | - | chr7_1:78032968-78032987 | Msa1040640:CDS | 35.0% | |
| !!! | TTTTTTGTCTGTAGACGAAG+TGG | + | chr7_1:78033060-78033079 | None:intergenic | 35.0% |
| AGTAAAAGAATAAGGCTGTC+GGG | - | chr7_1:78033083-78033102 | Msa1040640:intron | 35.0% | |
| TCTTGAATATCACGTGATAC+AGG | - | chr7_1:78033108-78033127 | Msa1040640:intron | 35.0% | |
| CATGCTAAATATGGCAATAG+AGG | - | chr7_1:78033197-78033216 | Msa1040640:intron | 35.0% | |
| ! | TGAAAGAGATTGCATTTTGG+AGG | - | chr7_1:78033299-78033318 | Msa1040640:intron | 35.0% |
| ! | TTATACAATTTTGCAGGCAC+TGG | - | chr7_1:78033493-78033512 | Msa1040640:intron | 35.0% |
| GTAAGGCTACACTTTATACT+TGG | - | chr7_1:78033558-78033577 | Msa1040640:CDS | 35.0% | |
| ATCTGATATGAAGGGATTCA+AGG | - | chr7_1:78033699-78033718 | Msa1040640:intron | 35.0% | |
| !! | ATGACCTGTTTTTCAGTATG+TGG | - | chr7_1:78033745-78033764 | Msa1040640:intron | 35.0% |
| TTTCAGCATCCAACATTCAT+TGG | - | chr7_1:78033798-78033817 | Msa1040640:intron | 35.0% | |
| TGGTACACACTATAAACAGA+AGG | + | chr7_1:78033826-78033845 | None:intergenic | 35.0% | |
| TAAATGGAAGGAAAAAACGG+TGG | + | chr7_1:78033846-78033865 | None:intergenic | 35.0% | |
| TGGTACACACTATAAATGGA+AGG | + | chr7_1:78033858-78033877 | None:intergenic | 35.0% | |
| GGGAAACTAAAATTTGAGAG+TGG | - | chr7_1:78033977-78033996 | Msa1040640:CDS | 35.0% | |
| ! | ATGAACACGTCCCAATTTTT+CGG | + | chr7_1:78034109-78034128 | None:intergenic | 35.0% |
| ATGCAACTTCTATCTTTCTG+GGG | - | chr7_1:78034315-78034334 | Msa1040640:CDS | 35.0% | |
| !!! | TATCTTTCTGGGGTTTCTTT+TGG | - | chr7_1:78034325-78034344 | Msa1040640:CDS | 35.0% |
| GGTTGACGTTCAGTTAAAAA+AGG | - | chr7_1:78034456-78034475 | Msa1040640:intron | 35.0% | |
| ! | ATTGATTTCTATAGATCCGG+TGG | - | chr7_1:78034490-78034509 | Msa1040640:intron | 35.0% |
| TGACACATGGTTATTACTAG+TGG | - | chr7_1:78034872-78034891 | Msa1040640:intron | 35.0% | |
| GACACATGGTTATTACTAGT+GGG | - | chr7_1:78034873-78034892 | Msa1040640:intron | 35.0% | |
| !!! | TACAGACGTTTTTTGCCTTT+AGG | - | chr7_1:78034937-78034956 | Msa1040640:intron | 35.0% |
| AAAATTCTGTGCACATGGAT+AGG | - | chr7_1:78035084-78035103 | Msa1040640:intron | 35.0% | |
| AAATTCTGTGCACATGGATA+GGG | - | chr7_1:78035085-78035104 | Msa1040640:intron | 35.0% | |
| AAATGCCTCTTGCAATATCT+TGG | + | chr7_1:78035183-78035202 | None:intergenic | 35.0% | |
| AGGCATTTGACATAGTTGAT+GGG | - | chr7_1:78035195-78035214 | Msa1040640:intron | 35.0% | |
| TTAAAAGCAGAGGACACATA+AGG | + | chr7_1:78035306-78035325 | None:intergenic | 35.0% | |
| GAGCAGAAATTTAAAAGCAG+AGG | + | chr7_1:78035316-78035335 | None:intergenic | 35.0% | |
| ! | GATATCTCATCTTTTCTACC+TGG | + | chr7_1:78035433-78035452 | None:intergenic | 35.0% |
| GAGAATCCAGAAGAAAAGAA+GGG | + | chr7_1:78035492-78035511 | None:intergenic | 35.0% | |
| TGAGAATCCAGAAGAAAAGA+AGG | + | chr7_1:78035493-78035512 | None:intergenic | 35.0% | |
| AAATTGTACAGATCGGTAGT+GGG | - | chr7_1:78035519-78035538 | Msa1040640:intron | 35.0% | |
| CTTGAGGAAAGTTGTATGTT+CGG | + | chr7_1:78035562-78035581 | None:intergenic | 35.0% | |
| CAACTCTATGATCAGTTACA+CGG | + | chr7_1:78035586-78035605 | None:intergenic | 35.0% | |
| !! | AAGAAGAAGAGCATCAATGA+AGG | + | chr7_1:78035660-78035679 | None:intergenic | 35.0% |
| GTTCTTCTACGTAATTCAGT+GGG | - | chr7_1:78035711-78035730 | Msa1040640:intron | 35.0% | |
| TTATTCTGTTCGAGATGCTA+GGG | - | chr7_1:78035803-78035822 | Msa1040640:five_prime_UTR | 35.0% | |
| !!! | TCCGTTATCTTTTTCAGCTG+CGG | - | chr7_1:78031714-78031733 | Msa1040640:three_prime_UTR | 40.0% |
| TCCGCAGCTGAAAAAGATAA+CGG | + | chr7_1:78031718-78031737 | None:intergenic | 40.0% | |
| GAAATTCGGAAGTGAGAGTT+CGG | + | chr7_1:78031759-78031778 | None:intergenic | 40.0% | |
| AACTCTCACTTCCGAATTTC+CGG | - | chr7_1:78031759-78031778 | Msa1040640:three_prime_UTR | 40.0% | |
| AGTGGAACCTGAAATATCAC+CGG | - | chr7_1:78031884-78031903 | Msa1040640:CDS | 40.0% | |
| AACAGATCCGGTGATATTTC+AGG | + | chr7_1:78031894-78031913 | None:intergenic | 40.0% | |
| GATTCTCTGCTATTAAGCAC+AGG | - | chr7_1:78031931-78031950 | Msa1040640:CDS | 40.0% | |
| AGAGTATGCAAGAGCTAACA+AGG | - | chr7_1:78032102-78032121 | Msa1040640:CDS | 40.0% | |
| TCAATTGAAGGCCAAACAGA+AGG | - | chr7_1:78032162-78032181 | Msa1040640:CDS | 40.0% | |
| !!! | CACATGTTTTGGTGATGTGT+CGG | - | chr7_1:78032287-78032306 | Msa1040640:intron | 40.0% |
| GCATAGACACTTCTAATCGT+AGG | + | chr7_1:78032341-78032360 | None:intergenic | 40.0% | |
| ! | AGCTAATGATTTGGCTACAC+CGG | - | chr7_1:78032443-78032462 | Msa1040640:intron | 40.0% |
| !! | CTACACCGGCTATCTTATTT+TGG | - | chr7_1:78032457-78032476 | Msa1040640:intron | 40.0% |
| GGTGAACACAAAAATGAAGC+AGG | + | chr7_1:78032624-78032643 | None:intergenic | 40.0% | |
| CAACTCCACTTTGTTGAAAC+AGG | - | chr7_1:78032756-78032775 | Msa1040640:intron | 40.0% | |
| AACAGCCTGTTTCAACAAAG+TGG | + | chr7_1:78032764-78032783 | None:intergenic | 40.0% | |
| !! | GGCTGTTGTTATTTCTTCCA+TGG | - | chr7_1:78032777-78032796 | Msa1040640:intron | 40.0% |
| CAATGCCGAAATTGTTAGGT+TGG | - | chr7_1:78032972-78032991 | Msa1040640:CDS | 40.0% | |
| GGTGTCCAACCTAACAATTT+CGG | + | chr7_1:78032980-78032999 | None:intergenic | 40.0% | |
| ! | TACAGGTTTTTACCATCTGC+AGG | - | chr7_1:78033125-78033144 | Msa1040640:intron | 40.0% |
| TACCATCTGCAGGAAATTGA+TGG | - | chr7_1:78033135-78033154 | Msa1040640:intron | 40.0% | |
| CAGTTTCCTTTCTTCCTCTA+TGG | + | chr7_1:78033235-78033254 | None:intergenic | 40.0% | |
| GCTGAAGTCATTACTTCCTA+AGG | - | chr7_1:78033266-78033285 | Msa1040640:intron | 40.0% | |
| CTTTCATCAGCATCATCCTT+AGG | + | chr7_1:78033285-78033304 | None:intergenic | 40.0% | |
| AATTTCTGCCAGCTTGTCTT+AGG | - | chr7_1:78033394-78033413 | Msa1040640:CDS | 40.0% | |
| ! | GAGAAGTATGCTCACAACAA+AGG | - | chr7_1:78033646-78033665 | Msa1040640:intron | 40.0% |
| ACAGCCACATACTGAAAAAC+AGG | + | chr7_1:78033752-78033771 | None:intergenic | 40.0% | |
| CAGAAGGTTCCAATGAATGT+TGG | + | chr7_1:78033810-78033829 | None:intergenic | 40.0% | |
| ACGGTGGTACACACTATAAA+TGG | + | chr7_1:78033830-78033849 | None:intergenic | 40.0% | |
| !! | ACTGCAGCTATTTTAGGAGT+TGG | - | chr7_1:78033947-78033966 | Msa1040640:intron | 40.0% |
| GAGTGGAATTCATAGAGTAC+AGG | - | chr7_1:78033994-78034013 | Msa1040640:intron | 40.0% | |
| AGTTCCTGTGACCGAAAAAT+TGG | - | chr7_1:78034095-78034114 | Msa1040640:intron | 40.0% | |
| GTTCCTGTGACCGAAAAATT+GGG | - | chr7_1:78034096-78034115 | Msa1040640:intron | 40.0% | |
| TAATTACCTCATCAGCCTGT+GGG | + | chr7_1:78034158-78034177 | None:intergenic | 40.0% | |
| TTAATTACCTCATCAGCCTG+TGG | + | chr7_1:78034159-78034178 | None:intergenic | 40.0% | |
| !! | CACAAGGCATTGTTCCATAA+GGG | + | chr7_1:78034188-78034207 | None:intergenic | 40.0% |
| !! | TCACAAGGCATTGTTCCATA+AGG | + | chr7_1:78034189-78034208 | None:intergenic | 40.0% |
| !!! | GGGTTTCTTTTGGTTCTGTT+AGG | - | chr7_1:78034335-78034354 | Msa1040640:exon | 40.0% |
| !! | GGTTCTGTTAGGTTGATGAA+TGG | - | chr7_1:78034346-78034365 | Msa1040640:exon | 40.0% |
| TGAACGTCAACCTACAAATG+GGG | + | chr7_1:78034448-78034467 | None:intergenic | 40.0% | |
| CTGAACGTCAACCTACAAAT+GGG | + | chr7_1:78034449-78034468 | None:intergenic | 40.0% | |
| ACTGAACGTCAACCTACAAA+TGG | + | chr7_1:78034450-78034469 | None:intergenic | 40.0% | |
| AGAATGACTCACATTCCAAC+TGG | - | chr7_1:78034553-78034572 | Msa1040640:intron | 40.0% | |
| GAATGACTCACATTCCAACT+GGG | - | chr7_1:78034554-78034573 | Msa1040640:intron | 40.0% | |
| GTTCATGTCATTACGCCTAA+AGG | + | chr7_1:78034955-78034974 | None:intergenic | 40.0% | |
| GTACTACTCTTCATGTGCAT+TGG | - | chr7_1:78035017-78035036 | Msa1040640:intron | 40.0% | |
| TGACTCGAATCACTTACTGT+TGG | - | chr7_1:78035122-78035141 | Msa1040640:intron | 40.0% | |
| GACTCGAATCACTTACTGTT+GGG | - | chr7_1:78035123-78035142 | Msa1040640:intron | 40.0% | |
| CTGAAACGGCATATGCTTAA+TGG | + | chr7_1:78035156-78035175 | None:intergenic | 40.0% | |
| GTTGTCCAAGATATTGCAAG+AGG | - | chr7_1:78035175-78035194 | Msa1040640:intron | 40.0% | |
| ! | GAGGCATTTGACATAGTTGA+TGG | - | chr7_1:78035194-78035213 | Msa1040640:intron | 40.0% |
| ! | GGCATTTGACATAGTTGATG+GGG | - | chr7_1:78035196-78035215 | Msa1040640:intron | 40.0% |
| !! | GCATTTGACATAGTTGATGG+GGG | - | chr7_1:78035197-78035216 | Msa1040640:intron | 40.0% |
| GAATAAAGCCAAAGCTCTCA+AGG | - | chr7_1:78035337-78035356 | Msa1040640:five_prime_UTR | 40.0% | |
| CAAATTGTACAGATCGGTAG+TGG | - | chr7_1:78035518-78035537 | Msa1040640:intron | 40.0% | |
| AATTGTACAGATCGGTAGTG+GGG | - | chr7_1:78035520-78035539 | Msa1040640:intron | 40.0% | |
| CGAACATACAACTTTCCTCA+AGG | - | chr7_1:78035560-78035579 | Msa1040640:five_prime_UTR | 40.0% | |
| CGTGTAACTGATCATAGAGT+TGG | - | chr7_1:78035584-78035603 | Msa1040640:five_prime_UTR | 40.0% | |
| AACATAGACGATGTGATGCA+AGG | - | chr7_1:78035620-78035639 | Msa1040640:intron | 40.0% | |
| CGTTCTTCTACGTAATTCAG+TGG | - | chr7_1:78035710-78035729 | Msa1040640:intron | 40.0% | |
| GTTATTCTGTTCGAGATGCT+AGG | - | chr7_1:78035802-78035821 | Msa1040640:five_prime_UTR | 40.0% | |
| CGTTTCGGCTAAGCTGAAAA+TGG | + | chr7_1:78031562-78031581 | None:intergenic | 45.0% | |
| CAGTTCAGTGTGTGAAAGAG+AGG | - | chr7_1:78031654-78031673 | Msa1040640:three_prime_UTR | 45.0% | |
| CGGAAGAGTAAAGACGAAAC+CGG | + | chr7_1:78031781-78031800 | None:intergenic | 45.0% | |
| CGGTTTCGTCTTTACTCTTC+CGG | - | chr7_1:78031779-78031798 | Msa1040640:exon | 45.0% | |
| TACTCTGACTGAGACGTTTC+TGG | + | chr7_1:78032088-78032107 | None:intergenic | 45.0% | |
| TTGTGTAAGTGTCTTGGGAG+AGG | - | chr7_1:78032371-78032390 | Msa1040640:intron | 45.0% | |
| GATACTCACACAGAACTGCA+AGG | + | chr7_1:78033026-78033045 | None:intergenic | 45.0% | |
| CAGTTCTGTGTGAGTATCTG+TGG | - | chr7_1:78033028-78033047 | Msa1040640:CDS | 45.0% | |
| AGCCATCAATTTCCTGCAGA+TGG | + | chr7_1:78033140-78033159 | None:intergenic | 45.0% | |
| !!! | TACAATTTTGCAGGCACTGG+TGG | - | chr7_1:78033496-78033515 | Msa1040640:intron | 45.0% |
| !!! | ACAATTTTGCAGGCACTGGT+GGG | - | chr7_1:78033497-78033516 | Msa1040640:intron | 45.0% |
| AGTATGCTCACAACAAAGGC+TGG | - | chr7_1:78033650-78033669 | Msa1040640:intron | 45.0% | |
| CAAAGGCTGGAAGTTTGATG+TGG | - | chr7_1:78033663-78033682 | Msa1040640:intron | 45.0% | |
| ! | GCTTTGGACCTCAATTTCTC+AGG | - | chr7_1:78033919-78033938 | Msa1040640:intron | 45.0% |
| TTGGACCTCAATTTCTCAGG+AGG | - | chr7_1:78033922-78033941 | Msa1040640:intron | 45.0% | |
| AGTAGCCTCCTGAGAAATTG+AGG | + | chr7_1:78033930-78033949 | None:intergenic | 45.0% | |
| !! | GAGGCTACTGCAGCTATTTT+AGG | - | chr7_1:78033941-78033960 | Msa1040640:intron | 45.0% |
| TATGTCCATGCCCCATTTGT+AGG | - | chr7_1:78034435-78034454 | Msa1040640:intron | 45.0% | |
| TTCTATAGATCCGGTGGTTC+AGG | - | chr7_1:78034496-78034515 | Msa1040640:intron | 45.0% | |
| ATAGCAATCACGATCCCAGT+TGG | + | chr7_1:78034571-78034590 | None:intergenic | 45.0% | |
| AGATGAGCGTTCTCAGCATA+TGG | - | chr7_1:78034594-78034613 | Msa1040640:intron | 45.0% | |
| ! | CTGTGCTACTGTCTTCTACT+TGG | - | chr7_1:78034906-78034925 | Msa1040640:intron | 45.0% |
| GCGTCAAAATTCTGTGCACA+TGG | - | chr7_1:78035079-78035098 | Msa1040640:intron | 45.0% | |
| !! | GACATAGTTGATGGGGGATT+TGG | - | chr7_1:78035203-78035222 | Msa1040640:intron | 45.0% |
| ACACAGTACCTTGAGAGCTT+TGG | + | chr7_1:78035348-78035367 | None:intergenic | 45.0% | |
| ATCAAAGCTTCGATCAGACC+AGG | - | chr7_1:78035412-78035431 | Msa1040640:five_prime_UTR | 45.0% | |
| AAGGAGCTTCGAAAGCTCAG+TGG | - | chr7_1:78032121-78032140 | Msa1040640:CDS | 50.0% | |
| GTGTCTGTGTTTGTGCTTGG+TGG | + | chr7_1:78032217-78032236 | None:intergenic | 50.0% | |
| GACGTGTCTGTGTTTGTGCT+TGG | + | chr7_1:78032220-78032239 | None:intergenic | 50.0% | |
| CTTCTAATCGTAGGCCTGTC+TGG | + | chr7_1:78032332-78032351 | None:intergenic | 50.0% | |
| CTCTCTCCCCCCTTATATGA+AGG | + | chr7_1:78032583-78032602 | None:intergenic | 50.0% | |
| GGCAATAGAGGAAATGAGCC+AGG | - | chr7_1:78033209-78033228 | Msa1040640:intron | 50.0% | |
| TCCTTTCTTCCTCTATGGCC+TGG | + | chr7_1:78033230-78033249 | None:intergenic | 50.0% | |
| !! | TGCATTTTGGAGGTACGAGC+AGG | - | chr7_1:78033309-78033328 | Msa1040640:intron | 50.0% |
| CAACAGGACCTAAGACAAGC+TGG | + | chr7_1:78033405-78033424 | None:intergenic | 50.0% | |
| !!! | CAATTTTGCAGGCACTGGTG+GGG | - | chr7_1:78033498-78033517 | Msa1040640:intron | 50.0% |
| !! | CGTCCCAATTTTTCGGTCAC+AGG | + | chr7_1:78034102-78034121 | None:intergenic | 50.0% |
| AATCGCAACGGAAACAGCAC+TGG | + | chr7_1:78034133-78034152 | None:intergenic | 50.0% | |
| GTCAACCTACAAATGGGGCA+TGG | + | chr7_1:78034443-78034462 | None:intergenic | 50.0% | |
| TATAGATCCGGTGGTTCAGG+TGG | - | chr7_1:78034499-78034518 | Msa1040640:intron | 50.0% | |
| CACACTTCCGATCAGCTGAA+AGG | - | chr7_1:78034974-78034993 | Msa1040640:intron | 50.0% | |
| AAGGCAGGCAGCTTAGAACT+TGG | - | chr7_1:78034993-78035012 | Msa1040640:intron | 50.0% | |
| TGATCAGTTACACGGCCTTG+AGG | + | chr7_1:78035578-78035597 | None:intergenic | 50.0% | |
| GACACTGTCGAACACCAGAC+AGG | - | chr7_1:78032315-78032334 | Msa1040640:intron | 55.0% | |
| ! | TAGGTTGGACACCTTCACCC+AGG | - | chr7_1:78032987-78033006 | Msa1040640:CDS | 55.0% |
| CCTTCACCCAGGTTCAAACC+CGG | - | chr7_1:78032998-78033017 | Msa1040640:CDS | 55.0% | |
| CTTCACCCAGGTTCAAACCC+GGG | - | chr7_1:78032999-78033018 | Msa1040640:CDS | 55.0% | |
| AAGGTCCCGGGTTTGAACCT+GGG | + | chr7_1:78033007-78033026 | None:intergenic | 55.0% | |
| ACACAGAACTGCAAGGTCCC+GGG | + | chr7_1:78033019-78033038 | None:intergenic | 55.0% | |
| CACACAGAACTGCAAGGTCC+CGG | + | chr7_1:78033020-78033039 | None:intergenic | 55.0% | |
| GGAAATGAGCCAGGCCATAG+AGG | - | chr7_1:78033218-78033237 | Msa1040640:intron | 55.0% | |
| GCCAGGCCATAGAGGAAGAA+AGG | - | chr7_1:78033226-78033245 | Msa1040640:intron | 55.0% | |
| TTCCGTTGCGATTCTCCCAC+AGG | - | chr7_1:78034140-78034159 | Msa1040640:intron | 55.0% | |
| AGCCTGTGGGAGAATCGCAA+CGG | + | chr7_1:78034145-78034164 | None:intergenic | 55.0% | |
| GATTCTCCCACAGGCTGATG+AGG | - | chr7_1:78034149-78034168 | Msa1040640:intron | 55.0% | |
| ATGCTGACCACCTGAACCAC+CGG | + | chr7_1:78034509-78034528 | None:intergenic | 55.0% | |
| CTTCCGATCAGCTGAAAGGC+AGG | - | chr7_1:78034978-78034997 | Msa1040640:intron | 55.0% | |
| CTGCCTGCCTTTCAGCTGAT+CGG | + | chr7_1:78034984-78035003 | None:intergenic | 55.0% | |
| CTGTTCGAGATGCTAGGGAG+AGG | - | chr7_1:78035808-78035827 | Msa1040640:five_prime_UTR | 55.0% | |
| CCGGGTTTGAACCTGGGTGA+AGG | + | chr7_1:78033001-78033020 | None:intergenic | 60.0% | |
| CAAGGTCCCGGGTTTGAACC+TGG | + | chr7_1:78033008-78033027 | None:intergenic | 60.0% | |
| !!! | TTTTGCAGGCACTGGTGGGG+AGG | - | chr7_1:78033501-78033520 | Msa1040640:intron | 60.0% |
| !! | TGCAGGCACTGGTGGGGAGG+AGG | - | chr7_1:78033504-78033523 | Msa1040640:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 78031537 | 78035983 | 78031537 | ID=Msa1040640;Name=Msa1040640 |
| chr7_1 | mRNA | 78031537 | 78035983 | 78031537 | ID=Msa1040640-mRNA-1;Parent=Msa1040640;Name=Msa1040640-mRNA-1;_AED=0.22;_eAED=0.22;_QI=492|1|1|1|0.9|0.90|11|259|296 |
| chr7_1 | exon | 78031537 | 78031990 | 78031537 | ID=Msa1040640-mRNA-1:exon:20753;Parent=Msa1040640-mRNA-1 |
| chr7_1 | exon | 78032087 | 78032182 | 78032087 | ID=Msa1040640-mRNA-1:exon:20752;Parent=Msa1040640-mRNA-1 |
| chr7_1 | exon | 78032905 | 78033063 | 78032905 | ID=Msa1040640-mRNA-1:exon:20751;Parent=Msa1040640-mRNA-1 |
| chr7_1 | exon | 78033350 | 78033427 | 78033350 | ID=Msa1040640-mRNA-1:exon:20750;Parent=Msa1040640-mRNA-1 |
| chr7_1 | exon | 78033505 | 78033579 | 78033505 | ID=Msa1040640-mRNA-1:exon:20749;Parent=Msa1040640-mRNA-1 |
| chr7_1 | exon | 78033800 | 78033878 | 78033800 | ID=Msa1040640-mRNA-1:exon:20748;Parent=Msa1040640-mRNA-1 |
| chr7_1 | exon | 78033963 | 78034011 | 78033963 | ID=Msa1040640-mRNA-1:exon:20747;Parent=Msa1040640-mRNA-1 |
| chr7_1 | exon | 78034190 | 78034373 | 78034190 | ID=Msa1040640-mRNA-1:exon:20746;Parent=Msa1040640-mRNA-1 |
| chr7_1 | exon | 78035337 | 78035439 | 78035337 | ID=Msa1040640-mRNA-1:exon:20745;Parent=Msa1040640-mRNA-1 |
| chr7_1 | exon | 78035537 | 78035637 | 78035537 | ID=Msa1040640-mRNA-1:exon:20744;Parent=Msa1040640-mRNA-1 |
| chr7_1 | exon | 78035720 | 78035983 | 78035720 | ID=Msa1040640-mRNA-1:exon:20743;Parent=Msa1040640-mRNA-1 |
| chr7_1 | five_prime_UTR | 78035720 | 78035983 | 78035720 | ID=Msa1040640-mRNA-1:five_prime_utr;Parent=Msa1040640-mRNA-1 |
| chr7_1 | five_prime_UTR | 78035537 | 78035637 | 78035537 | ID=Msa1040640-mRNA-1:five_prime_utr;Parent=Msa1040640-mRNA-1 |
| chr7_1 | five_prime_UTR | 78035337 | 78035439 | 78035337 | ID=Msa1040640-mRNA-1:five_prime_utr;Parent=Msa1040640-mRNA-1 |
| chr7_1 | five_prime_UTR | 78034350 | 78034373 | 78034350 | ID=Msa1040640-mRNA-1:five_prime_utr;Parent=Msa1040640-mRNA-1 |
| chr7_1 | CDS | 78034190 | 78034349 | 78034190 | ID=Msa1040640-mRNA-1:cds;Parent=Msa1040640-mRNA-1 |
| chr7_1 | CDS | 78033963 | 78034011 | 78033963 | ID=Msa1040640-mRNA-1:cds;Parent=Msa1040640-mRNA-1 |
| chr7_1 | CDS | 78033800 | 78033878 | 78033800 | ID=Msa1040640-mRNA-1:cds;Parent=Msa1040640-mRNA-1 |
| chr7_1 | CDS | 78033505 | 78033579 | 78033505 | ID=Msa1040640-mRNA-1:cds;Parent=Msa1040640-mRNA-1 |
| chr7_1 | CDS | 78033350 | 78033427 | 78033350 | ID=Msa1040640-mRNA-1:cds;Parent=Msa1040640-mRNA-1 |
| chr7_1 | CDS | 78032905 | 78033063 | 78032905 | ID=Msa1040640-mRNA-1:cds;Parent=Msa1040640-mRNA-1 |
| chr7_1 | CDS | 78032087 | 78032182 | 78032087 | ID=Msa1040640-mRNA-1:cds;Parent=Msa1040640-mRNA-1 |
| chr7_1 | CDS | 78031796 | 78031990 | 78031796 | ID=Msa1040640-mRNA-1:cds;Parent=Msa1040640-mRNA-1 |
| chr7_1 | three_prime_UTR | 78031537 | 78031795 | 78031537 | ID=Msa1040640-mRNA-1:three_prime_utr;Parent=Msa1040640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
