AlfalfaGEDB | Msa1082890

M. sativa cultivar zhongmu-4 / Msa1082890

KEGG: K02835
GO: -
PFAM: PF03462.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1082890	AES82275.2	99.511	409	2	0	1	409	1	409	0.0	842

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1082890	sp\|A2RVR7\|MTRF1_ARATH	75.066	377	94	0	33	409	37	413	0.0	592

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1082890	G7KUL3	99.511	409	2	0	1	409	1	409	0.0	842

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1040640	Msa1082890	0.935620	6.361540e-97	-8.615850e-47
Msa1082500	Msa1082890	0.807238	5.572211e-50	-8.615850e-47
Msa1082890	Msa1411020	0.803241	3.829899e-49	-8.615850e-47
Msa1082890	Msa1424290	0.803352	3.632764e-49	-8.615850e-47
Msa1082890	Msa1434350	0.805845	1.096699e-49	-8.615850e-47
Msa1082890	Msa1439320	0.808515	2.982517e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1082890	MtrunA17_Chr7g0270701	99.511	409	2	0	1	409	1	409	0.0	841
Msa1082890	MtrunA17_Chr7g0268791	41.584	303	173	1	68	370	76	374	4.49e-76	242
Msa1082890	MtrunA17_Chr7g0271771	37.500	320	174	11	100	401	164	475	3.60e-50	176
Msa1082890	MtrunA17_Chr7g0249581	31.161	353	218	10	49	394	123	457	1.25e-35	136
Msa1082890	MtrunA17_Chr1g0172361	27.742	310	204	7	82	383	109	406	1.38e-15	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1082890	AT2G47020.1	75.066	377	94	0	33	409	37	413	0.0	592
Msa1082890	AT2G47020.3	70.223	403	94	1	33	409	37	439	0.0	579
Msa1082890	AT2G47020.4	77.219	338	77	0	72	409	11	348	0.0	544
Msa1082890	AT2G47020.5	72.954	281	76	0	33	313	37	317	1.64e-149	427
Msa1082890	AT2G47020.2	71.368	234	67	0	33	266	37	270	4.05e-116	340
Msa1082890	AT3G62910.1	40.557	323	176	3	75	394	82	391	9.01e-81	254
Msa1082890	AT1G56350.1	36.093	302	176	7	106	394	174	471	5.46e-48	171
Msa1082890	AT5G36170.2	33.333	312	188	7	97	394	136	441	4.57e-39	146
Msa1082890	AT5G36170.1	33.333	312	188	7	97	394	137	442	4.64e-39	146
Msa1082890	AT5G36170.3	31.696	224	136	4	97	307	137	356	7.66e-26	108

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Find 77 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGATTTCTATAGATC+CGG	0.417665	7_2:+83070858	Msa1082890:CDS
AAAGATATTCATTGCAAACA+AGG	0.584561	7_2:-83069902	None:intergenic
AAATTGTACAGATCGGTAGT+GGG	0.595903	7_2:+83071990	Msa1082890:intron
AACAGATCCGGTGATATTTC+AGG	0.234503	7_2:-83068263	None:intergenic
AACATAGACGATGTGATGCA+AGG	0.597991	7_2:+83072091	Msa1082890:CDS
AACTCTCACTTCCGAATTTC+CGG	0.193573	7_2:+83068131	Msa1082890:CDS
AAGAAGAAGAGCATCAATGA+AGG	0.557042	7_2:-83072128	None:intergenic
AAGGAGCTTCGAAAGCTCAG+TGG	0.714146	7_2:+83068493	Msa1082890:CDS
AATCGCAACGGAAACAGCAC+TGG	0.594367	7_2:-83070501	None:intergenic
AATTGTACAGATCGGTAGTG+GGG	0.669973	7_2:+83071991	Msa1082890:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCGGATCTGTTAAATATAA+TGG	+	chr7_2:83068274-83068293	Msa1082890:CDS	30.0%
GTTCAAAATTACCTTCTGTT+TGG	-	chr7_2:83068548-83068567	None:intergenic	30.0%
AAAATGTTGTGTAAGTGTCT+TGG	+	chr7_2:83068737-83068756	Msa1082890:intron	30.0%
AAATGTTGTGTAAGTGTCTT+GGG	+	chr7_2:83068738-83068757	Msa1082890:intron	30.0%
CTTTACCAAAATAAGATAGC+CGG	-	chr7_2:83068837-83068856	None:intergenic	30.0%
ATTTATCCTTCATATAAGGG+GGG	+	chr7_2:83068946-83068965	Msa1082890:intron	30.0%
AAGACAGAAAAAAAATGCCA+TGG	-	chr7_2:83069169-83069188	None:intergenic	30.0%
TAGTAAAAGAATAAGGCTGT+CGG	+	chr7_2:83069454-83069473	Msa1082890:intron	30.0%
AGACAAAGACATGCTAAATA+TGG	+	chr7_2:83069560-83069579	Msa1082890:CDS	30.0%
AAAAAAGCAAAACGATCAAC+AGG	-	chr7_2:83069793-83069812	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	83067904	83072454	83067904	ID=Msa1082890;Name=Msa1082890
chr7_2	mRNA	83067904	83072454	83067904	ID=Msa1082890-mRNA-1;Parent=Msa1082890;Name=Msa1082890-mRNA-1;_AED=0.22;_eAED=0.22;_QI=154\|1\|1\|1\|1\|1\|11\|259\|409
chr7_2	exon	83067904	83068172	83067904	ID=Msa1082890-mRNA-1:exon:21711;Parent=Msa1082890-mRNA-1
chr7_2	exon	83068255	83068355	83068255	ID=Msa1082890-mRNA-1:exon:21712;Parent=Msa1082890-mRNA-1
chr7_2	exon	83068457	83068555	83068457	ID=Msa1082890-mRNA-1:exon:21713;Parent=Msa1082890-mRNA-1
chr7_2	exon	83069519	83069702	83069519	ID=Msa1082890-mRNA-1:exon:21714;Parent=Msa1082890-mRNA-1
chr7_2	exon	83069881	83069929	83069881	ID=Msa1082890-mRNA-1:exon:21715;Parent=Msa1082890-mRNA-1
chr7_2	exon	83070014	83070092	83070014	ID=Msa1082890-mRNA-1:exon:21716;Parent=Msa1082890-mRNA-1
chr7_2	exon	83070312	83070386	83070312	ID=Msa1082890-mRNA-1:exon:21717;Parent=Msa1082890-mRNA-1
chr7_2	exon	83070464	83070541	83070464	ID=Msa1082890-mRNA-1:exon:21718;Parent=Msa1082890-mRNA-1
chr7_2	exon	83070828	83070986	83070828	ID=Msa1082890-mRNA-1:exon:21719;Parent=Msa1082890-mRNA-1
chr7_2	exon	83071809	83071904	83071809	ID=Msa1082890-mRNA-1:exon:21720;Parent=Msa1082890-mRNA-1
chr7_2	exon	83072001	83072454	83072001	ID=Msa1082890-mRNA-1:exon:21721;Parent=Msa1082890-mRNA-1
chr7_2	five_prime_UTR	83067904	83068057	83067904	ID=Msa1082890-mRNA-1:five_prime_utr;Parent=Msa1082890-mRNA-1
chr7_2	CDS	83068058	83068172	83068058	ID=Msa1082890-mRNA-1:cds;Parent=Msa1082890-mRNA-1
chr7_2	CDS	83068255	83068355	83068255	ID=Msa1082890-mRNA-1:cds;Parent=Msa1082890-mRNA-1
chr7_2	CDS	83068457	83068555	83068457	ID=Msa1082890-mRNA-1:cds;Parent=Msa1082890-mRNA-1
chr7_2	CDS	83069519	83069702	83069519	ID=Msa1082890-mRNA-1:cds;Parent=Msa1082890-mRNA-1
chr7_2	CDS	83069881	83069929	83069881	ID=Msa1082890-mRNA-1:cds;Parent=Msa1082890-mRNA-1
chr7_2	CDS	83070014	83070092	83070014	ID=Msa1082890-mRNA-1:cds;Parent=Msa1082890-mRNA-1
chr7_2	CDS	83070312	83070386	83070312	ID=Msa1082890-mRNA-1:cds;Parent=Msa1082890-mRNA-1
chr7_2	CDS	83070464	83070541	83070464	ID=Msa1082890-mRNA-1:cds;Parent=Msa1082890-mRNA-1
chr7_2	CDS	83070828	83070986	83070828	ID=Msa1082890-mRNA-1:cds;Parent=Msa1082890-mRNA-1
chr7_2	CDS	83071809	83071904	83071809	ID=Msa1082890-mRNA-1:cds;Parent=Msa1082890-mRNA-1
chr7_2	CDS	83072001	83072195	83072001	ID=Msa1082890-mRNA-1:cds;Parent=Msa1082890-mRNA-1
chr7_2	three_prime_UTR	83072196	83072454	83072196	ID=Msa1082890-mRNA-1:three_prime_utr;Parent=Msa1082890-mRNA-1

Gene Sequence

>Msa1082890

ATGAGGATTAATGGTAGATTTATGAATTTCCGTTATCTTTTTCAGCTGCGGAAGCGATTCGAATCAAAATCCGAACTCTCACTTCCGAATTTCCGGTTTCGTCTTTACTCTTCCGAAGTGGAACCTGAAATATCACCGGATCTGTTAAATATAATGGAACAAAGATTCTCTGCTATTAAGCACAGGGCTACGTGTCTTGATAATCTTATTAATCAGCCAGAAACGTCACAGTCAGAGTATGCAAGAGCTAACAAGGAGCTTCGAAAGCTCAGTGGTTCTGTGCAACTTATTAATCAATTGAAGGCCAAACAGAAGGAAATTGATGGCTTGAAGTCACTAATGAATGAAAGTTCTGAAGACAAAGACATGCTAAATATGGCAACAGAGGAAATGAGCCAGGCCATAGAGGAAGAAAGGAAACTGCAGAATTTGCTGCTGAAGTCATTACTTCCTAAGGATGATGCTGATGAAAGAGATTGCATTTTGGAGGTACGAGCAGGCACTGGTGGGGAGGAGGCTTCCTTGTTTGCAATGAATATCTTTAAGATGTACGAGAAGTATGCTCACAACAAAGGCTGGAAGTTTGATGTGGTAGATATAGCTCAATCTGATATGAAGGGATTCAAGGAGGCTACTGCAGCTATTTTAGGAGTTGGTGTTTTTGGGAAACTAAAATTTGAGAGTGGAATTCATAGAGTACAGCGAGTTCCTGTGACCGAAAAATTGGGACGTGTTCATACCAGTGCTGTTTCCGTTGCGATTCTCCCACAGGCTGATGAGGTTGACGTTCAGTTAAAAAAGGAAGACTTGAAAATTGATTTCTATAGATCCGGTGGTTCAGGTGGTCAGCATGCAAATAAAACTAGCAGTGCTGTTAGAATGACTCACATTCCAACTGGGATCGTGATTGCTATACAAGATGAGCGTTCTCAGCATATGAATAAAGCCAAAGCTCTCAAGGTACTGTGTGCAAAGCTATATGAAATAGAAAGAACTAGACTTCATAGTAGTCGATCAAAGCTTCGATCAGACCAGATCGGTAGTGGGGACAGATCTGAACGCATCCGAACATACAACTTTCCTCAAGGCCGTGTAACTGATCATAGAGTTGGTATCACTTATCACAACATAGACGATGTGATGCAAGGAGAGAGTCTTGATGCCTTCATTGATGCTCTTCTTCTTAAAGAAGAAATGGATGCAATTGCAACTTTTCGTTCTTCTACGTAA

Protein sequence

>Msa1082890

MRINGRFMNFRYLFQLRKRFESKSELSLPNFRFRLYSSEVEPEISPDLLNIMEQRFSAIKHRATCLDNLINQPETSQSEYARANKELRKLSGSVQLINQLKAKQKEIDGLKSLMNESSEDKDMLNMATEEMSQAIEEERKLQNLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAMNIFKMYEKYAHNKGWKFDVVDIAQSDMKGFKEATAAILGVGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADEVDVQLKKEDLKIDFYRSGGSGGQHANKTSSAVRMTHIPTGIVIAIQDERSQHMNKAKALKVLCAKLYEIERTRLHSSRSKLRSDQIGSGDRSERIRTYNFPQGRVTDHRVGITYHNIDDVMQGESLDAFIDALLLKEEMDAIATFRSST*