AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1042390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1042390 MtrunA17_Chr7g0265931 86.082 388 21 4 1 359 1 384 0.0 603
Msa1042390 MtrunA17_Chr4g0021261 62.385 109 38 3 74 181 26 132 8.37e-40 143
Msa1042390 MtrunA17_Chr4g0070591 47.239 163 61 5 63 218 6 150 1.72e-37 138
Msa1042390 MtrunA17_Chr5g0409471 62.037 108 29 4 74 181 17 112 6.21e-36 133
Msa1042390 MtrunA17_Chr8g0343881 58.407 113 43 3 72 182 10 120 1.05e-35 133
Msa1042390 MtrunA17_Chr2g0300511 55.556 126 41 4 63 182 4 120 1.80e-35 132
Msa1042390 MtrunA17_Chr1g0152191 54.545 121 43 3 69 181 140 256 3.88e-33 130
Msa1042390 MtrunA17_Chr3g0127641 46.087 115 36 2 74 184 113 205 1.83e-26 110
Msa1042390 MtrunA17_Chr8g0351521 41.667 132 58 3 77 203 58 175 4.27e-20 90.9
Msa1042390 MtrunA17_Chr8g0351521 60.784 51 20 0 137 187 302 352 2.49e-14 73.9
Msa1042390 MtrunA17_Chr8g0351291 58.000 50 21 0 137 186 51 100 1.25e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1042390 AT3G52910.1 47.264 402 126 16 1 346 1 372 7.82e-85 262
Msa1042390 AT2G36400.1 59.799 199 56 7 1 184 1 190 2.87e-64 209
Msa1042390 AT2G36400.1 53.285 137 43 7 213 346 272 390 2.21e-22 97.8
Msa1042390 AT4G37740.1 54.237 118 44 3 69 182 160 271 2.56e-33 130
Msa1042390 AT3G13960.1 54.545 110 46 3 74 181 17 124 2.65e-30 119
Msa1042390 AT2G22840.1 55.556 117 42 4 69 181 129 239 5.74e-29 117
Msa1042390 AT4G24150.3 47.826 115 56 2 71 181 109 223 2.72e-25 106
Msa1042390 AT4G24150.2 47.826 115 56 2 71 181 147 261 4.58e-25 106
Msa1042390 AT2G06200.2 44.079 152 66 6 40 179 18 162 4.78e-25 103
Msa1042390 AT2G06200.1 50.427 117 47 4 74 179 7 123 5.24e-25 102
Msa1042390 AT5G53660.1 30.822 292 144 10 74 334 60 324 5.69e-25 104
Msa1042390 AT4G24150.1 40.714 140 54 3 71 181 147 286 3.75e-22 97.8
Msa1042390 AT2G45480.2 48.039 102 53 0 77 178 28 129 1.71e-21 94.0
Msa1042390 AT2G45480.1 48.039 102 53 0 77 178 26 127 5.62e-21 94.0
Msa1042390 AT2G45480.1 43.478 92 36 3 120 204 284 366 4.01e-17 82.8
Msa1042390 AT2G45480.3 48.039 102 53 0 77 178 28 129 6.14e-21 94.0
Msa1042390 AT2G45480.3 43.478 92 36 3 120 204 286 368 4.24e-17 82.4
Msa1042390 AT2G06200.3 71.111 45 11 1 137 179 7 51 2.20e-15 73.6

Find 114 sgRNAs with CRISPR-Local

Find 534 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAGGTTCCTTTATATCTT+TGG 0.220269 7_1:+80333418 None:intergenic
TAAGCTCTTCTCTTCAATTT+TGG 0.223402 7_1:+80328132 None:intergenic
TTAATTAACTTGTGTTGTTT+TGG 0.224060 7_1:-80327639 Msa1042390:three_prime_UTR
AGGCCCACATTCTCATTTCT+TGG 0.238523 7_1:+80327887 None:intergenic
GTGGCAAGAACTTGAGTTAC+AGG 0.267624 7_1:-80332875 Msa1042390:CDS
AACAACAACTTCAATTGAAT+TGG 0.277393 7_1:-80327832 Msa1042390:CDS
TAGCACCTAAGTTTAGTAAT+TGG 0.280090 7_1:-80327666 Msa1042390:exon
GAAGAAATGTTGTTATTTCC+TGG 0.313041 7_1:+80327959 None:intergenic
CATCAGTTGCCACGTTGTTC+TGG 0.314092 7_1:-80327707 Msa1042390:CDS
TGAGCAGGGTGAAGAAGTTT+TGG 0.323925 7_1:+80333168 None:intergenic
TGATAATGATGAAGAAAATA+AGG 0.326826 7_1:+80332766 None:intergenic
TGGGCCCCATGCAGCTCCAC+TGG 0.330853 7_1:-80328157 Msa1042390:intron
TTGATAGGTTGAAGAAGTTC+AGG 0.344449 7_1:+80332811 None:intergenic
TACAGAGCTTCTGTACAAAA+AGG 0.356258 7_1:-80333399 Msa1042390:five_prime_UTR
ATCCAGAGCCAGGTCGTTGC+CGG 0.359541 7_1:-80332489 Msa1042390:CDS
GGTATCTGCCAAAGATATAA+AGG 0.372131 7_1:-80333426 None:intergenic
TGGATCGGAGGATGGAATTC+AGG 0.373096 7_1:-80327812 Msa1042390:CDS
GTTGCTGCTCAGTTTGTACT+AGG 0.384039 7_1:+80327867 None:intergenic
TAGTGTTGCAAAGTGGGTAC+TGG 0.393066 7_1:-80332528 Msa1042390:CDS
CTCCGGCAACGACCTGGCTC+TGG 0.400600 7_1:+80332487 None:intergenic
TGTGCGAGGGATGTGGTGGC+TGG 0.410154 7_1:-80332442 Msa1042390:CDS
TGTTGGTGGTGTTGATGAGC+AGG 0.411541 7_1:+80333153 None:intergenic
TGCCTTAGCATTTGCCCACC+TGG 0.418969 7_1:+80328073 None:intergenic
TATGTTTCTTGACTAGTTGT+TGG 0.424160 7_1:-80327552 Msa1042390:three_prime_UTR
CAAGTTGGTGACTTTGGTGT+TGG 0.425449 7_1:+80333098 None:intergenic
ATCTGACAAGTTGGTGACTT+TGG 0.426402 7_1:+80333092 None:intergenic
GCCACTGAGATAAGCTGAAA+TGG 0.433868 7_1:+80332893 None:intergenic
GTGACTTTGGTGTTGGGTTG+AGG 0.434579 7_1:+80333105 None:intergenic
GAGATAGTGCAGTGAAGTGC+AGG 0.446015 7_1:+80333265 None:intergenic
GTTGGGAAGGAAAAGGATAA+TGG 0.448851 7_1:-80327534 Msa1042390:three_prime_UTR
GGTGGGGATGGAAGACCAGG+TGG 0.449072 7_1:-80328088 Msa1042390:CDS
CTTACTAGGAAATCTGTTGT+TGG 0.450424 7_1:+80333056 None:intergenic
GGAGCAATGGATCCAGAGCC+AGG 0.451345 7_1:-80332499 Msa1042390:CDS
ATGTTTCTTGACTAGTTGTT+GGG 0.458462 7_1:-80327551 Msa1042390:three_prime_UTR
GTTTCTCTGACTCATGCTGT+TGG 0.459512 7_1:+80333208 None:intergenic
AAGTTGGTGACTTTGGTGTT+GGG 0.464829 7_1:+80333099 None:intergenic
TACATTATTAGGAATGGGAA+TGG 0.465443 7_1:-80332920 Msa1042390:intron
ACTAGTTGTTGGGAAGGAAA+AGG 0.469554 7_1:-80327541 Msa1042390:three_prime_UTR
GTGGGTGGGGATGGAAGACC+AGG 0.473317 7_1:-80328091 Msa1042390:CDS
AACTTAGGTGCTAATGTAGC+TGG 0.475819 7_1:+80327676 None:intergenic
ACTAGTACTAGTACTTGGTT+AGG 0.477138 7_1:+80333328 None:intergenic
ACATTCTCATTTCTTGGACA+TGG 0.480284 7_1:+80327893 None:intergenic
CAAAGTGGGTACTGGGGAAG+AGG 0.492409 7_1:-80332520 Msa1042390:CDS
TTGGAGAAATGTTGGACCAC+TGG 0.493055 7_1:-80327600 Msa1042390:three_prime_UTR
GGGCCCCATGCAGCTCCACT+GGG 0.497465 7_1:-80328156 Msa1042390:intron
GTGGCGGTGTGCGAGGGATG+TGG 0.497767 7_1:-80332449 Msa1042390:CDS
AAGCACCAATTACTAAACTT+AGG 0.498532 7_1:+80327661 None:intergenic
GTCCAACATTTCTCCAAAAG+TGG 0.499831 7_1:+80327606 None:intergenic
AGGTAATCAAGTGTCTTCAA+TGG 0.501284 7_1:-80327792 Msa1042390:CDS
AGTGTTGCAAAGTGGGTACT+GGG 0.501618 7_1:-80332527 Msa1042390:CDS
GTTGGTGTGGGAAGTTCCAC+AGG 0.502197 7_1:+80332367 None:intergenic
GGTAATCAAGTGTCTTCAAT+GGG 0.510631 7_1:-80327791 Msa1042390:CDS
GTTCCACAGGCTTTCTTGAA+CGG 0.512655 7_1:+80332380 None:intergenic
TGAAGTGCAGGTATTAAGAT+TGG 0.513205 7_1:+80333277 None:intergenic
TGTCTCTCAATTTCAATGCC+AGG 0.516379 7_1:-80327977 Msa1042390:CDS
TCTGTTCTCCGGCAACGACC+TGG 0.516750 7_1:+80332481 None:intergenic
ACATTATTAGGAATGGGAAT+GGG 0.520045 7_1:-80332919 Msa1042390:intron
TTTGATATTTAGATACATGT+TGG 0.524543 7_1:-80332851 Msa1042390:CDS
CAACTTCAATTGAATTGGAT+CGG 0.524596 7_1:-80327827 Msa1042390:CDS
TTGTTTCGTATGAAAGTCCA+TGG 0.526188 7_1:+80333239 None:intergenic
AATTGAATTGGATCGGAGGA+TGG 0.528787 7_1:-80327820 Msa1042390:CDS
AAATTACTAGTACTAGTACT+TGG 0.528959 7_1:+80333323 None:intergenic
GACCAGGTGGGCAAATGCTA+AGG 0.530796 7_1:-80328075 Msa1042390:CDS
AACTGATGTAAAACACTAGT+AGG 0.531416 7_1:+80327722 None:intergenic
TTCTTGACTAGTTGTTGGGA+AGG 0.531988 7_1:-80327547 Msa1042390:three_prime_UTR
AAGGAAGTGCAGGTGATTGT+TGG 0.537153 7_1:+80333136 None:intergenic
GATGATCATGTGGGTGGGGA+TGG 0.545887 7_1:-80328100 Msa1042390:CDS
CTTCCCACACCAACTAGTAA+TGG 0.551902 7_1:-80332358 Msa1042390:CDS
GTTGGTGGTGTTGATGAGCA+GGG 0.556192 7_1:+80333154 None:intergenic
ACCGCCATTACTAGTTGGTG+TGG 0.561256 7_1:+80332354 None:intergenic
ATATTTAGATACATGTTGGT+TGG 0.568638 7_1:-80332847 Msa1042390:CDS
CACTGCACTATCTCTCTCCA+TGG 0.572642 7_1:-80333256 Msa1042390:exon
ATGTCCAAGAAATGAGAATG+TGG 0.572914 7_1:-80327891 Msa1042390:CDS
ATCTGAAAGCGATGATCATG+TGG 0.576871 7_1:-80328110 Msa1042390:CDS
TAATGCTGAATCTGACAAGT+TGG 0.579106 7_1:+80333083 None:intergenic
GTACTGGGGAAGAGGAGCAA+TGG 0.581936 7_1:-80332512 Msa1042390:CDS
GATCCACCGCCATTACTAGT+TGG 0.583483 7_1:+80332349 None:intergenic
GGTACAAACAAAGGAAGTGC+AGG 0.589399 7_1:+80333126 None:intergenic
GATCTAAGTGCCTCAGCAAG+TGG 0.603514 7_1:+80327764 None:intergenic
GAAGTGCAGGTGATTGTTGG+TGG 0.603904 7_1:+80333139 None:intergenic
GCCATTTCAGCTTATCTCAG+TGG 0.605314 7_1:-80332894 Msa1042390:CDS
ACACCAACTAGTAATGGCGG+TGG 0.613692 7_1:-80332352 Msa1042390:CDS
GGTCGTTGCCGGAGAACAGA+CGG 0.624707 7_1:-80332478 Msa1042390:CDS
TCAGACTCTTGCAGTGATCG+TGG 0.625243 7_1:+80328034 None:intergenic
AGTGCAGGTATTAAGATTGG+TGG 0.626695 7_1:+80333280 None:intergenic
GTGTCATTGAAACTGTCCAC+TGG 0.626952 7_1:-80327929 Msa1042390:CDS
CTTCAATTGAATTGGATCGG+AGG 0.627744 7_1:-80327824 Msa1042390:CDS
TGGACTTTCATACGAAACAA+TGG 0.628358 7_1:-80333236 Msa1042390:CDS
AATGGGAGGACCACTTGCTG+AGG 0.631048 7_1:-80327774 Msa1042390:CDS
AAAGCGATGATCATGTGGGT+GGG 0.634917 7_1:-80328105 Msa1042390:CDS
TGGTTCTTCTGCATAGCCAG+TGG 0.644987 7_1:+80327913 None:intergenic
TGTCCAAGAAATGAGAATGT+GGG 0.646445 7_1:-80327890 Msa1042390:CDS
CCGCCATTACTAGTTGGTGT+GGG 0.647594 7_1:+80332355 None:intergenic
TTGGGTTGAGGTACAAACAA+AGG 0.648493 7_1:+80333117 None:intergenic
GTGGGGATGGAAGACCAGGT+GGG 0.648878 7_1:-80328087 Msa1042390:CDS
ATTGATACAAAACGTGCCAG+TGG 0.649155 7_1:+80327584 None:intergenic
AAACCGTTCAAGAAAGCCTG+TGG 0.653157 7_1:-80332383 Msa1042390:CDS
ATAGGTTGAAGAAGTTCAGG+AGG 0.653453 7_1:+80332814 None:intergenic
GAATGAAACTTACATGCTGT+AGG 0.658238 7_1:+80332742 None:intergenic
AGTACTTGGTTAGGTGACTG+TGG 0.660838 7_1:+80333337 None:intergenic
AATCAAGTGTCTTCAATGGG+AGG 0.663742 7_1:-80327788 Msa1042390:CDS
AAGCGATGATCATGTGGGTG+GGG 0.664729 7_1:-80328104 Msa1042390:CDS
ACAATGCTGAAAACAATGGT+GGG 0.670861 7_1:-80328012 Msa1042390:CDS
CATTGAAATTGAGAGACATG+TGG 0.678899 7_1:+80327982 None:intergenic
CCCACACCAACTAGTAATGG+CGG 0.678913 7_1:-80332355 Msa1042390:CDS
GAAAGCGATGATCATGTGGG+TGG 0.680119 7_1:-80328106 Msa1042390:CDS
ACTTGGTTAGGTGACTGTGG+TGG 0.690181 7_1:+80333340 None:intergenic
GACAATGCTGAAAACAATGG+TGG 0.691801 7_1:-80328013 Msa1042390:CDS
GTGTTGCAAAGTGGGTACTG+GGG 0.700679 7_1:-80332526 Msa1042390:CDS
TGAAATTGAGAGACATGTGG+AGG 0.728362 7_1:+80327985 None:intergenic
TCTGAAAGCGATGATCATGT+GGG 0.731403 7_1:-80328109 Msa1042390:CDS
TCTGACAATGCTGAAAACAA+TGG 0.732411 7_1:-80328016 Msa1042390:CDS
TGTGAAAGACACATGCATCG+TGG 0.747726 7_1:-80332409 Msa1042390:CDS
GTTTCAGAACCAGAACAACG+TGG 0.778246 7_1:+80327698 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAAAATAAAAAA+AGG - chr7_1:80331388-80331407 Msa1042390:intron 0.0%
!! TCTAAATATAGTTAAAAAAT+CGG + chr7_1:80329416-80329435 None:intergenic 10.0%
!! ATTTAAATCTTTAATAAGAT+CGG - chr7_1:80329588-80329607 Msa1042390:intron 10.0%
!! ATTTAAATCTTTAATAAGAT+CGG - chr7_1:80329588-80329607 Msa1042390:intron 10.0%
!! AAAATAAAATAAAAAAAGGA+TGG - chr7_1:80331392-80331411 Msa1042390:intron 10.0%
!! TTAAAAAAATAAAAAAAGGA+TGG + chr7_1:80332115-80332134 None:intergenic 10.0%
!! GCAATTAAAAAAATAAAAAA+AGG + chr7_1:80332119-80332138 None:intergenic 10.0%
!! AAATTAAAAGAAAATAATTC+TGG + chr7_1:80331360-80331379 None:intergenic 10.0%
!!! TTTATTATAGTATAATTTGT+TGG - chr7_1:80332716-80332735 Msa1042390:intron 10.0%
!!! TTTAATAAAAGTACCTATTA+AGG - chr7_1:80328827-80328846 Msa1042390:intron 15.0%
!!! CATATTTAAATACTTTTCAT+TGG + chr7_1:80328890-80328909 None:intergenic 15.0%
!!! TTTTATTACTTTTTTAAACG+TGG - chr7_1:80329068-80329087 Msa1042390:intron 15.0%
!!! TTTATTACTTTTTTAAACGT+GGG - chr7_1:80329069-80329088 Msa1042390:intron 15.0%
!! ATTTACTAATTAAATGACAA+TGG - chr7_1:80329235-80329254 Msa1042390:intron 15.0%
!! ATTTATGTATAATCTACTAA+CGG + chr7_1:80329565-80329584 None:intergenic 15.0%
!! ATTTATGTATAATCTACTAA+CGG + chr7_1:80329565-80329584 None:intergenic 15.0%
!!! AATTTAGTTTTAGAAAGAAA+CGG + chr7_1:80330304-80330323 None:intergenic 15.0%
!! CATAAAGATTAAAAATCATA+TGG + chr7_1:80330349-80330368 None:intergenic 15.0%
!!! CATATGATTTTTAATCTTTA+TGG - chr7_1:80330347-80330366 Msa1042390:intron 15.0%
!!! AATATCCATTTTTTTTCTTA+GGG + chr7_1:80332271-80332290 None:intergenic 15.0%
!!! AAATATCCATTTTTTTTCTT+AGG + chr7_1:80332270-80332289 None:intergenic 15.0%
!!! AAATATCCATTTTTTTTCTT+AGG - chr7_1:80332270-80332289 Msa1042390:intron 15.0%
!!! AATATCCATTTTTTTTCTTA+GGG - chr7_1:80332271-80332290 Msa1042390:intron 15.0%
!! AAAAATAAAACCAATTTGTA+TGG + chr7_1:80332348-80332367 None:intergenic 15.0%
!!! GTTTTATTTTTATAGAATTG+AGG - chr7_1:80332357-80332376 Msa1042390:CDS 15.0%
!!! GCTTAAATTAATTTTTATGA+TGG - chr7_1:80332379-80332398 Msa1042390:CDS 15.0%
!! TAACAAGTTCTTACATTATT+AGG - chr7_1:80328021-80328040 Msa1042390:CDS 20.0%
!! TTTGATATTTAGATACATGT+TGG - chr7_1:80328101-80328120 Msa1042390:CDS 20.0%
!!! TGATAATGATGAAGAAAATA+AGG + chr7_1:80328189-80328208 None:intergenic 20.0%
!! AAGTAAAAATAATGTTACTG+GGG + chr7_1:80328340-80328359 None:intergenic 20.0%
!! CAAGTAAAAATAATGTTACT+GGG + chr7_1:80328341-80328360 None:intergenic 20.0%
!! GTTTAATATGTAAAGATAGT+GGG + chr7_1:80328914-80328933 None:intergenic 20.0%
!! TGTTTAATATGTAAAGATAG+TGG + chr7_1:80328915-80328934 None:intergenic 20.0%
!!! TATTACTCATTTTTACAAGT+GGG - chr7_1:80328948-80328967 Msa1042390:intron 20.0%
!! GTAATAAAATATGTACTACT+TGG + chr7_1:80329016-80329035 None:intergenic 20.0%
!!! TTGATTTGATACTATTGTTT+AGG - chr7_1:80329641-80329660 Msa1042390:intron 20.0%
!!! TTTTGTCATCTTTTTAAGAT+GGG - chr7_1:80329882-80329901 Msa1042390:intron 20.0%
!!! AATTCAAACTTACTTTTTGA+AGG + chr7_1:80329916-80329935 None:intergenic 20.0%
!! AAGATTAAAAATCATATGGA+CGG + chr7_1:80330345-80330364 None:intergenic 20.0%
!! GTCATACATAATTAACTTTA+TGG - chr7_1:80330442-80330461 Msa1042390:intron 20.0%
!!! ATATCCATTTTTTTTCTTAG+GGG + chr7_1:80332272-80332291 None:intergenic 20.0%
!!! TTTAGCCTTTTGATTATTTA+CGG + chr7_1:80330780-80330799 None:intergenic 20.0%
!! AAAAGGCTAAATTAATTCAA+TGG - chr7_1:80330789-80330808 Msa1042390:intron 20.0%
!!! TTGATGATTTTAAGACTTAT+GGG + chr7_1:80330847-80330866 None:intergenic 20.0%
!!! ATTGATGATTTTAAGACTTA+TGG + chr7_1:80330848-80330867 None:intergenic 20.0%
!! AAGTCTTAAAATCATCAATT+TGG - chr7_1:80330849-80330868 Msa1042390:intron 20.0%
!!! ATATCCATTTTTTTTCTTAG+GGG - chr7_1:80332272-80332291 Msa1042390:intron 20.0%
!!! TGTTGAAAAGTACTAATAAT+GGG + chr7_1:80332434-80332453 None:intergenic 20.0%
!!! TTGTTGAAAAGTACTAATAA+TGG + chr7_1:80332435-80332454 None:intergenic 20.0%
!! AATAACTCAACTCTATAAAA+AGG + chr7_1:80332474-80332493 None:intergenic 20.0%
!!! TTTTTGTTTATAAATGTGAC+CGG + chr7_1:80332550-80332569 None:intergenic 20.0%
!! CATTCAATTCTTAATGTATT+TGG - chr7_1:80332585-80332604 Msa1042390:intron 20.0%
!!! GAAATTTGATTTTAGTATTC+CGG + chr7_1:80332680-80332699 None:intergenic 20.0%
!! TACTAAAATCAAATTTCAAG+AGG - chr7_1:80332683-80332702 Msa1042390:intron 20.0%
!!! TTAATTAACTTGTGTTGTTT+TGG - chr7_1:80333313-80333332 Msa1042390:five_prime_UTR 20.0%
!!! TAATTAACTTGTGTTGTTTT+GGG - chr7_1:80333314-80333333 Msa1042390:five_prime_UTR 20.0%
! AAATTACTAGTACTAGTACT+TGG + chr7_1:80327632-80327651 None:intergenic 25.0%
! CTAACTCAAAATAACTTACT+AGG + chr7_1:80327913-80327932 None:intergenic 25.0%
!! TTCAAACATCTTTCTTCTTT+TGG - chr7_1:80327987-80328006 Msa1042390:CDS 25.0%
! AGTTCTTACATTATTAGGAA+TGG - chr7_1:80328026-80328045 Msa1042390:CDS 25.0%
! GTTCTTACATTATTAGGAAT+GGG - chr7_1:80328027-80328046 Msa1042390:CDS 25.0%
! ATATTTAGATACATGTTGGT+TGG - chr7_1:80328105-80328124 Msa1042390:CDS 25.0%
!!! TGTGTTTTTTGGTTTTGTTT+TGG + chr7_1:80328273-80328292 None:intergenic 25.0%
!!! AGAAAAGAAAGTGTGTTTTT+TGG + chr7_1:80328284-80328303 None:intergenic 25.0%
! AGTAAAAATAATGTTACTGG+GGG + chr7_1:80328339-80328358 None:intergenic 25.0%
! CCAAGTAAAAATAATGTTAC+TGG + chr7_1:80328342-80328361 None:intergenic 25.0%
!!! CCAGTAACATTATTTTTACT+TGG - chr7_1:80328339-80328358 Msa1042390:intron 25.0%
!! TTTTTATTAGTGTTGCAAAG+TGG - chr7_1:80328417-80328436 Msa1042390:intron 25.0%
!! TTTTATTAGTGTTGCAAAGT+GGG - chr7_1:80328418-80328437 Msa1042390:intron 25.0%
! TGATTAAAGTGAAGATCAAA+AGG + chr7_1:80328696-80328715 None:intergenic 25.0%
! TTGATCTTCACTTTAATCAA+CGG - chr7_1:80328697-80328716 Msa1042390:intron 25.0%
!!! CTATTACTCATTTTTACAAG+TGG - chr7_1:80328947-80328966 Msa1042390:intron 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr7_1:80328975-80328994 None:intergenic 25.0%
! TTATTACTTCTTTATGCAAG+TGG - chr7_1:80328988-80329007 Msa1042390:intron 25.0%
! TATTACTTCTTTATGCAAGT+GGG - chr7_1:80328989-80329008 Msa1042390:intron 25.0%
! TTATTACTTCTTTATGCAAG+TGG - chr7_1:80328988-80329007 Msa1042390:intron 25.0%
! TATTACTTCTTTATGCAAGT+GGG - chr7_1:80328989-80329008 Msa1042390:intron 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr7_1:80328975-80328994 None:intergenic 25.0%
! ACTACAAGTAATTACTCATT+AGG + chr7_1:80329275-80329294 None:intergenic 25.0%
! AAAATACTACTAGTAGCTTT+GGG - chr7_1:80329337-80329356 Msa1042390:intron 25.0%
!!! AGTTAAAAAATCGGTTTTCA+CGG + chr7_1:80329407-80329426 None:intergenic 25.0%
! ATCTTGTCATACTATTGTTT+AGG - chr7_1:80329510-80329529 Msa1042390:intron 25.0%
! TAAATCTTTAATAAGATCGG+TGG - chr7_1:80329591-80329610 Msa1042390:intron 25.0%
! TAAATCTTTAATAAGATCGG+TGG - chr7_1:80329591-80329610 Msa1042390:intron 25.0%
!!! CTTTTGTCATCTTTTTAAGA+TGG - chr7_1:80329881-80329900 Msa1042390:intron 25.0%
! TTTGATGCATAACCAAATAA+TGG - chr7_1:80329934-80329953 Msa1042390:intron 25.0%
! ATTATTTGAACCAAATCCAA+AGG + chr7_1:80330275-80330294 None:intergenic 25.0%
! TACTAGTAGTCATTATAAGT+GGG - chr7_1:80330420-80330439 Msa1042390:intron 25.0%
!!! TATCCATTTTTTTTCTTAGG+GGG + chr7_1:80332273-80332292 None:intergenic 25.0%
! AAAATCAGCAAATCAAAAGA+GGG + chr7_1:80332229-80332248 None:intergenic 25.0%
! AACAAAAAGGAACAAAAATC+CGG - chr7_1:80330734-80330753 Msa1042390:intron 25.0%
! ACCTGAAGCTAAATTATATT+TGG - chr7_1:80330954-80330973 Msa1042390:intron 25.0%
!! ACCAAATATAATTTAGCTTC+AGG + chr7_1:80330958-80330977 None:intergenic 25.0%
! TGAAGCTAAATTATATTTGG+TGG - chr7_1:80330957-80330976 Msa1042390:intron 25.0%
! TTATATCCTTGCATCATAAT+TGG + chr7_1:80331037-80331056 None:intergenic 25.0%
! TATGATGCAAGGATATAAAA+AGG - chr7_1:80331039-80331058 Msa1042390:intron 25.0%
!! GAGAATTTTGTATTGTTACA+TGG + chr7_1:80331507-80331526 None:intergenic 25.0%
! AAAAGAAAATTGCATACTGT+TGG + chr7_1:80331545-80331564 None:intergenic 25.0%
!! TGTTAGTTTCTTGAAAAAAG+TGG + chr7_1:80331627-80331646 None:intergenic 25.0%
! TTACAGATTTGCACAAATAA+TGG + chr7_1:80332042-80332061 None:intergenic 25.0%
! AAAATCAGCAAATCAAAAGA+GGG - chr7_1:80332229-80332248 Msa1042390:intron 25.0%
!!! TATCCATTTTTTTTCTTAGG+GGG - chr7_1:80332273-80332292 Msa1042390:intron 25.0%
! AGCCTAACTTTAATTATAAG+TGG - chr7_1:80332311-80332330 Msa1042390:intron 25.0%
! GCCTAACTTTAATTATAAGT+GGG - chr7_1:80332312-80332331 Msa1042390:intron 25.0%
! ACCCACTTATAATTAAAGTT+AGG + chr7_1:80332316-80332335 None:intergenic 25.0%
! TCATAATTCACCATACAAAT+TGG - chr7_1:80332335-80332354 Msa1042390:CDS 25.0%
! GAGTTATTATCGTATTAAGA+TGG - chr7_1:80332486-80332505 Msa1042390:CDS 25.0%
! AATGTATTTGGCCAATATAT+AGG - chr7_1:80332597-80332616 Msa1042390:intron 25.0%
! AACGTATTTGACCTATATAT+TGG + chr7_1:80332611-80332630 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr7_1:80332658-80332677 Msa1042390:intron 25.0%
! AACAACAACTTCAATTGAAT+TGG - chr7_1:80333120-80333139 Msa1042390:CDS 25.0%
!!! AATTAACTTGTGTTGTTTTG+GGG - chr7_1:80333315-80333334 Msa1042390:five_prime_UTR 25.0%
TGTAGGTTCCTTTATATCTT+TGG + chr7_1:80327537-80327556 None:intergenic 30.0%
! AAAAACCAAGTACTGTGTAT+GGG + chr7_1:80327586-80327605 None:intergenic 30.0%
! TAAAAACCAAGTACTGTGTA+TGG + chr7_1:80327587-80327606 None:intergenic 30.0%
!! GTAAGAACTTGTTAAAGTGT+TGG + chr7_1:80328015-80328034 None:intergenic 30.0%
TACATTATTAGGAATGGGAA+TGG - chr7_1:80328032-80328051 Msa1042390:CDS 30.0%
ACATTATTAGGAATGGGAAT+GGG - chr7_1:80328033-80328052 Msa1042390:CDS 30.0%
! TGAAGAAGACTTTTCTTGAT+AGG + chr7_1:80328159-80328178 None:intergenic 30.0%
CATGTAAGTTTCATTCTACT+TGG - chr7_1:80328217-80328236 Msa1042390:intron 30.0%
ATTCTACTTGGTTTCTTACA+CGG - chr7_1:80328229-80328248 Msa1042390:intron 30.0%
!!! TTGTTTTGGAGTATGTGATA+TGG + chr7_1:80328259-80328278 None:intergenic 30.0%
! ACTTTCTTTTCTTCGTGTTT+TGG - chr7_1:80328292-80328311 Msa1042390:intron 30.0%
! CTTTCTTTTCTTCGTGTTTT+GGG - chr7_1:80328293-80328312 Msa1042390:intron 30.0%
ATCAAAAGGAGATTTGAATG+AGG + chr7_1:80328682-80328701 None:intergenic 30.0%
CCTTATTAGTGTATTGTCAT+TGG + chr7_1:80328864-80328883 None:intergenic 30.0%
CCAATGACAATACACTAATA+AGG - chr7_1:80328861-80328880 Msa1042390:intron 30.0%
!! AAATTAAGAGCATCTCCAAT+GGG + chr7_1:80329219-80329238 None:intergenic 30.0%
!! TAAATTAAGAGCATCTCCAA+TGG + chr7_1:80329220-80329239 None:intergenic 30.0%
CAAAATACTACTAGTAGCTT+TGG - chr7_1:80329336-80329355 Msa1042390:intron 30.0%
!! GTTAAAAAATCGGTTTTCAC+GGG + chr7_1:80329406-80329425 None:intergenic 30.0%
AATTTCAAACTTGAACCAAG+TGG + chr7_1:80329539-80329558 None:intergenic 30.0%
AATTTCAAACTTGAACCAAG+TGG + chr7_1:80329539-80329558 None:intergenic 30.0%
ATGAAGATCATTTAATCCAG+TGG - chr7_1:80329825-80329844 Msa1042390:intron 30.0%
TGAAGATCATTTAATCCAGT+GGG - chr7_1:80329826-80329845 Msa1042390:intron 30.0%
GACAGAAAAAAAAGTTGTTC+TGG + chr7_1:80329862-80329881 None:intergenic 30.0%
! ATGCATAACCAAATAATGGA+AGG - chr7_1:80329938-80329957 Msa1042390:intron 30.0%
TACATCTTCCTTCCATTATT+TGG + chr7_1:80329949-80329968 None:intergenic 30.0%
AATTAGTTCAACATTGTGAC+AGG - chr7_1:80329968-80329987 Msa1042390:intron 30.0%
CTCAACCACTTATTTATGAT+CGG - chr7_1:80330164-80330183 Msa1042390:intron 30.0%
TTGCCAAGTATGAAACATAT+TGG + chr7_1:80330243-80330262 None:intergenic 30.0%
AATAATGAAGCCTTTGGATT+TGG - chr7_1:80330262-80330281 Msa1042390:intron 30.0%
!!! AGTTTTAGAAAGAAACGGTT+GGG + chr7_1:80330299-80330318 None:intergenic 30.0%
!!! TAGTTTTAGAAAGAAACGGT+TGG + chr7_1:80330300-80330319 None:intergenic 30.0%
ATACTATTGTAGTACGACAT+TGG + chr7_1:80330396-80330415 None:intergenic 30.0%
GTACTAGTAGTCATTATAAG+TGG - chr7_1:80330419-80330438 Msa1042390:intron 30.0%
! TCGCAACTATTTGAAACATA+GGG + chr7_1:80330487-80330506 None:intergenic 30.0%
! ATCGCAACTATTTGAAACAT+AGG + chr7_1:80330488-80330507 None:intergenic 30.0%
CAAAATCAGCAAATCAAAAG+AGG + chr7_1:80332228-80332247 None:intergenic 30.0%
GAACACCGTAAATAATCAAA+AGG - chr7_1:80330772-80330791 Msa1042390:intron 30.0%
GAAAACTGGAATTTAGTTGA+GGG + chr7_1:80330816-80330835 None:intergenic 30.0%
TGAAAACTGGAATTTAGTTG+AGG + chr7_1:80330817-80330836 None:intergenic 30.0%
TATGGGACTAAAATGAAAAC+TGG + chr7_1:80330830-80330849 None:intergenic 30.0%
! TTTTGCTCCGTTATTCAATT+TGG - chr7_1:80330881-80330900 Msa1042390:intron 30.0%
TAAAACAAAAGCTTAACAGC+TGG - chr7_1:80331075-80331094 Msa1042390:intron 30.0%
!!! TGCATGGTTTTAGTTTCTAA+GGG + chr7_1:80331102-80331121 None:intergenic 30.0%
!!! ATGCATGGTTTTAGTTTCTA+AGG + chr7_1:80331103-80331122 None:intergenic 30.0%
TTTACATCCAACTCTATTCA+TGG + chr7_1:80331746-80331765 None:intergenic 30.0%
TGGTTACAAATTGGATGATT+TGG + chr7_1:80332065-80332084 None:intergenic 30.0%
GTGACTATTTGGTTACAAAT+TGG + chr7_1:80332074-80332093 None:intergenic 30.0%
CAAAATCAGCAAATCAAAAG+AGG - chr7_1:80332228-80332247 Msa1042390:intron 30.0%
AAAGTGTGTCTTAAATTTGC+TGG - chr7_1:80332405-80332424 Msa1042390:CDS 30.0%
TATTTATGCTGTCTCATTAC+TGG - chr7_1:80332775-80332794 Msa1042390:CDS 30.0%
ATTTATGCTGTCTCATTACT+GGG - chr7_1:80332776-80332795 Msa1042390:CDS 30.0%
! TAAGCTCTTCTCTTCAATTT+TGG + chr7_1:80332823-80332842 None:intergenic 30.0%
!!! TAAGGCATTTTTTTGACGAT+TGG - chr7_1:80332895-80332914 Msa1042390:CDS 30.0%
!! GAAGAAATGTTGTTATTTCC+TGG + chr7_1:80332996-80333015 None:intergenic 30.0%
CAACTTCAATTGAATTGGAT+CGG - chr7_1:80333125-80333144 Msa1042390:CDS 30.0%
AACTGATGTAAAACACTAGT+AGG + chr7_1:80333233-80333252 None:intergenic 30.0%
TAGCACCTAAGTTTAGTAAT+TGG - chr7_1:80333286-80333305 Msa1042390:five_prime_UTR 30.0%
AAGCACCAATTACTAAACTT+AGG + chr7_1:80333294-80333313 None:intergenic 30.0%
!!! ATTAACTTGTGTTGTTTTGG+GGG - chr7_1:80333316-80333335 Msa1042390:five_prime_UTR 30.0%
! TATGTTTCTTGACTAGTTGT+TGG - chr7_1:80333400-80333419 Msa1042390:five_prime_UTR 30.0%
! ATGTTTCTTGACTAGTTGTT+GGG - chr7_1:80333401-80333420 Msa1042390:five_prime_UTR 30.0%
! TTTTTGTACAGAAGCTCTGT+AGG + chr7_1:80327554-80327573 None:intergenic 35.0%
TACAGAGCTTCTGTACAAAA+AGG - chr7_1:80327553-80327572 Msa1042390:three_prime_UTR 35.0%
ACTAGTACTAGTACTTGGTT+AGG + chr7_1:80327627-80327646 None:intergenic 35.0%
TGAAGTGCAGGTATTAAGAT+TGG + chr7_1:80327678-80327697 None:intergenic 35.0%
TTGTTTCGTATGAAAGTCCA+TGG + chr7_1:80327716-80327735 None:intergenic 35.0%
TGGACTTTCATACGAAACAA+TGG - chr7_1:80327716-80327735 Msa1042390:CDS 35.0%
!! AAGAAGTTTTGGCATCTTTG+TGG + chr7_1:80327776-80327795 None:intergenic 35.0%
TAATGCTGAATCTGACAAGT+TGG + chr7_1:80327872-80327891 None:intergenic 35.0%
CTTACTAGGAAATCTGTTGT+TGG + chr7_1:80327899-80327918 None:intergenic 35.0%
! TTGATAGGTTGAAGAAGTTC+AGG + chr7_1:80328144-80328163 None:intergenic 35.0%
GAATGAAACTTACATGCTGT+AGG + chr7_1:80328213-80328232 None:intergenic 35.0%
AAAAGGAGATTTGAATGAGG+AGG + chr7_1:80328679-80328698 None:intergenic 35.0%
AAATAAGTGATGTGTCACGT+GGG + chr7_1:80328800-80328819 None:intergenic 35.0%
TAAATAAGTGATGTGTCACG+TGG + chr7_1:80328801-80328820 None:intergenic 35.0%
AAGGAACGAGCAACTATATA+AGG + chr7_1:80329124-80329143 None:intergenic 35.0%
TATAGTTGCTCGTTCCTTAA+CGG - chr7_1:80329126-80329145 Msa1042390:intron 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG - chr7_1:80329152-80329171 Msa1042390:intron 35.0%
! AATTTTTCTTCCTCCAATGG+AGG - chr7_1:80329155-80329174 Msa1042390:intron 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG - chr7_1:80329156-80329175 Msa1042390:intron 35.0%
!! AATTAAGAGCATCTCCAATG+GGG + chr7_1:80329218-80329237 None:intergenic 35.0%
ACTGATACCAAACTGAGATA+CGG - chr7_1:80329996-80330015 Msa1042390:intron 35.0%
GCCATAAAACATTGATCCAA+CGG - chr7_1:80330105-80330124 Msa1042390:intron 35.0%
ACCACTTATTTATGATCGGA+CGG - chr7_1:80330168-80330187 Msa1042390:intron 35.0%
CCAAGTATGAAACATATTGG+CGG + chr7_1:80330240-80330259 None:intergenic 35.0%
TTGGCAAATAATGAAGCCTT+TGG - chr7_1:80330256-80330275 Msa1042390:intron 35.0%
!!! GTTTTAGAAAGAAACGGTTG+GGG + chr7_1:80330298-80330317 None:intergenic 35.0%
! GCAACTATTTGAAACATAGG+GGG + chr7_1:80330485-80330504 None:intergenic 35.0%
! CGCAACTATTTGAAACATAG+GGG + chr7_1:80330486-80330505 None:intergenic 35.0%
TGACCCCCTAAGAAAAAAAA+TGG - chr7_1:80330510-80330529 Msa1042390:intron 35.0%
!!! TATTTTGACCCCCTATGTTT+TGG - chr7_1:80330534-80330553 Msa1042390:intron 35.0%
ATCCAGACTTTAGATACATG+TGG - chr7_1:80330633-80330652 Msa1042390:intron 35.0%
! TGAATAACGGAGCAAAAGTT+GGG + chr7_1:80330878-80330897 None:intergenic 35.0%
! TTGAATAACGGAGCAAAAGT+TGG + chr7_1:80330879-80330898 None:intergenic 35.0%
! ATTTAGCTTCAGGTCTAGTT+GGG + chr7_1:80330948-80330967 None:intergenic 35.0%
! AATTTAGCTTCAGGTCTAGT+TGG + chr7_1:80330949-80330968 None:intergenic 35.0%
TCCTTGCATCATAATTGGTT+GGG + chr7_1:80331032-80331051 None:intergenic 35.0%
ATCCTTGCATCATAATTGGT+TGG + chr7_1:80331033-80331052 None:intergenic 35.0%
TTCGGTACTGTTACAATACA+AGG + chr7_1:80331243-80331262 None:intergenic 35.0%
! TTTTCCCCATAATGATGGTT+CGG + chr7_1:80331261-80331280 None:intergenic 35.0%
GTTACATGGTAAACCAAAGA+AGG + chr7_1:80331493-80331512 None:intergenic 35.0%
TTCATCATCAGCATGATTCA+CGG - chr7_1:80331889-80331908 Msa1042390:intron 35.0%
ATTGAAGAACAGCAGTTTGA+GGG + chr7_1:80331929-80331948 None:intergenic 35.0%
AGAAACATCACGTGACTATT+TGG + chr7_1:80332085-80332104 None:intergenic 35.0%
!!! TATTTTGACCCCCTATGTTT+TGG + chr7_1:80330534-80330553 None:intergenic 35.0%
! GTTAGGCTTAAATGCACTTT+TGG + chr7_1:80332299-80332318 None:intergenic 35.0%
CTCTATAAAAAGGACTTGCA+TGG + chr7_1:80332464-80332483 None:intergenic 35.0%
TGTTTATAAATGTGACCGGA+GGG + chr7_1:80332546-80332565 None:intergenic 35.0%
TTGTTTATAAATGTGACCGG+AGG + chr7_1:80332547-80332566 None:intergenic 35.0%
! CTGTTTTCATATGATGTCCT+TGG - chr7_1:80332742-80332761 Msa1042390:intron 35.0%
ATAAATATCAAGCAAGGCCA+AGG + chr7_1:80332762-80332781 None:intergenic 35.0%
GACAGCATAAATATCAAGCA+AGG + chr7_1:80332768-80332787 None:intergenic 35.0%
TCTGACAATGCTGAAAACAA+TGG - chr7_1:80332936-80332955 Msa1042390:intron 35.0%
ACAATGCTGAAAACAATGGT+GGG - chr7_1:80332940-80332959 Msa1042390:intron 35.0%
CATTGAAATTGAGAGACATG+TGG + chr7_1:80332973-80332992 None:intergenic 35.0%
ACATTCTCATTTCTTGGACA+TGG + chr7_1:80333062-80333081 None:intergenic 35.0%
ATGTCCAAGAAATGAGAATG+TGG - chr7_1:80333061-80333080 Msa1042390:CDS 35.0%
TGTCCAAGAAATGAGAATGT+GGG - chr7_1:80333062-80333081 Msa1042390:CDS 35.0%
AGGTAATCAAGTGTCTTCAA+TGG - chr7_1:80333160-80333179 Msa1042390:CDS 35.0%
GGTAATCAAGTGTCTTCAAT+GGG - chr7_1:80333161-80333180 Msa1042390:CDS 35.0%
!! TTCCACTTTTGGAGAAATGT+TGG - chr7_1:80333344-80333363 Msa1042390:five_prime_UTR 35.0%
AGAGCTTCTGTACAAAAAGG+AGG - chr7_1:80327556-80327575 Msa1042390:three_prime_UTR 40.0%
! GTTTTCCCATACACAGTACT+TGG - chr7_1:80327578-80327597 Msa1042390:three_prime_UTR 40.0%
AGTGCAGGTATTAAGATTGG+TGG + chr7_1:80327675-80327694 None:intergenic 40.0%
!! TTGGGTTGAGGTACAAACAA+AGG + chr7_1:80327838-80327857 None:intergenic 40.0%
!! AAGTTGGTGACTTTGGTGTT+GGG + chr7_1:80327856-80327875 None:intergenic 40.0%
!! ATCTGACAAGTTGGTGACTT+TGG + chr7_1:80327863-80327882 None:intergenic 40.0%
! ATAGGTTGAAGAAGTTCAGG+AGG + chr7_1:80328141-80328160 None:intergenic 40.0%
! ACTTTTTACCGTCTGTTCTC+CGG + chr7_1:80328485-80328504 None:intergenic 40.0%
AATGAGGAGGAAGTAACAAG+AGG + chr7_1:80328666-80328685 None:intergenic 40.0%
!! TCTCTTAAGAGCATCCACAA+TGG - chr7_1:80328743-80328762 Msa1042390:intron 40.0%
CATTTAAGGAGTCCTTGGTA+GGG + chr7_1:80328774-80328793 None:intergenic 40.0%
AATAAGTGATGTGTCACGTG+GGG + chr7_1:80328799-80328818 None:intergenic 40.0%
GGAGTCATTGAGTCCTTAAT+AGG + chr7_1:80328843-80328862 None:intergenic 40.0%
ATAGTTGCTCGTTCCTTAAC+GGG - chr7_1:80329127-80329146 Msa1042390:intron 40.0%
GAAAAATTGAGTCCCCGTTA+AGG + chr7_1:80329143-80329162 None:intergenic 40.0%
!! ATTAAGAGCATCTCCAATGG+GGG + chr7_1:80329217-80329236 None:intergenic 40.0%
GGTGCAAATAATTGAACCGT+CGG + chr7_1:80329365-80329384 None:intergenic 40.0%
! TTTTCACGGGTAAAAACGGA+CGG + chr7_1:80329393-80329412 None:intergenic 40.0%
! TCGGTTTTCACGGGTAAAAA+CGG + chr7_1:80329397-80329416 None:intergenic 40.0%
!! CTATTGTTTAGGTTGCCACT+TGG - chr7_1:80329521-80329540 Msa1042390:intron 40.0%
!! CTATTGTTTAGGTTGCCACT+TGG - chr7_1:80329521-80329540 Msa1042390:intron 40.0%
! GCCGTTGGATCAATGTTTTA+TGG + chr7_1:80330109-80330128 None:intergenic 40.0%
TGTAACAGCAGGATGCTTTA+AGG + chr7_1:80330202-80330221 None:intergenic 40.0%
CCGCCAATATGTTTCATACT+TGG - chr7_1:80330237-80330256 Msa1042390:intron 40.0%
AAAAGAGGGCCAAAACATAG+GGG + chr7_1:80332243-80332262 None:intergenic 40.0%
CAAAAGAGGGCCAAAACATA+GGG + chr7_1:80332242-80332261 None:intergenic 40.0%
TCAAAAGAGGGCCAAAACAT+AGG + chr7_1:80332241-80332260 None:intergenic 40.0%
AGCTAAGTGACTTGACACAT+GGG + chr7_1:80330594-80330613 None:intergenic 40.0%
! CTCCACATGTATCTAAAGTC+TGG + chr7_1:80330638-80330657 None:intergenic 40.0%
!!! CTTTTTGTTTTATCCGCGAG+TGG + chr7_1:80330723-80330742 None:intergenic 40.0%
CACTCGCGGATAAAACAAAA+AGG - chr7_1:80330721-80330740 Msa1042390:intron 40.0%
!! AAAAATCCGGTGCCGTATAT+AGG - chr7_1:80330747-80330766 Msa1042390:intron 40.0%
! AATAACGGAGCAAAAGTTGG+GGG + chr7_1:80330876-80330895 None:intergenic 40.0%
! GAATAACGGAGCAAAAGTTG+GGG + chr7_1:80330877-80330896 None:intergenic 40.0%
TCCGTTATTCAATTTGGTCC+CGG - chr7_1:80330887-80330906 Msa1042390:intron 40.0%
TCCGGGACCAAATTGAATAA+CGG + chr7_1:80330891-80330910 None:intergenic 40.0%
!! GTTTGGAATTTTGCTCTTCC+GGG + chr7_1:80330908-80330927 None:intergenic 40.0%
!! GGTTTGGAATTTTGCTCTTC+CGG + chr7_1:80330909-80330928 None:intergenic 40.0%
AGCAGCAACCAAAAAAGCTT+TGG - chr7_1:80330993-80331012 Msa1042390:intron 40.0%
!!! GTGTACTGCCAAAGCTTTTT+TGG + chr7_1:80331004-80331023 None:intergenic 40.0%
ACCCAACCAATTATGATGCA+AGG - chr7_1:80331028-80331047 Msa1042390:intron 40.0%
!!! GGTGTTTTTAGGAATTGCGT+TGG + chr7_1:80331148-80331167 None:intergenic 40.0%
! ATACAAGGCTGTTGCTACTT+TGG + chr7_1:80331228-80331247 None:intergenic 40.0%
! ACAGTACCGAACCATCATTA+TGG - chr7_1:80331252-80331271 Msa1042390:intron 40.0%
! CAGTACCGAACCATCATTAT+GGG - chr7_1:80331253-80331272 Msa1042390:intron 40.0%
! AGTACCGAACCATCATTATG+GGG - chr7_1:80331254-80331273 Msa1042390:intron 40.0%
! CATGCTTTTCCCCATAATGA+TGG + chr7_1:80331266-80331285 None:intergenic 40.0%
! TCATTATGGGGAAAAGCATG+TGG - chr7_1:80331266-80331285 Msa1042390:intron 40.0%
GATGTATGTGAGAGCTATGT+GGG + chr7_1:80331301-80331320 None:intergenic 40.0%
GTTGGAGAAGAAGAGAAAGA+GGG + chr7_1:80331440-80331459 None:intergenic 40.0%
CTCTTTCTCTTCTTCTCCAA+CGG - chr7_1:80331439-80331458 Msa1042390:intron 40.0%
ACATGGTAAACCAAAGAAGG+TGG + chr7_1:80331490-80331509 None:intergenic 40.0%
CAAAATTCTCCCACCTTCTT+TGG - chr7_1:80331517-80331536 Msa1042390:intron 40.0%
CATACTGTTGGTACCAAAGA+AGG + chr7_1:80331533-80331552 None:intergenic 40.0%
ATTTGCTTTCGATCACTAGC+CGG - chr7_1:80331593-80331612 Msa1042390:intron 40.0%
TCACAGCAACCAATAAGTGA+AGG + chr7_1:80331779-80331798 None:intergenic 40.0%
GATAACCAATCTAAGCTCCA+TGG - chr7_1:80331797-80331816 Msa1042390:intron 40.0%
TGATGAAGTTCCGATTCAGT+TGG + chr7_1:80331876-80331895 None:intergenic 40.0%
GATTGAAGAACAGCAGTTTG+AGG + chr7_1:80331930-80331949 None:intergenic 40.0%
TGCTGTTCTTCAATCACATG+CGG - chr7_1:80331935-80331954 Msa1042390:intron 40.0%
!! AAATGTGGTGGGAAGGTATT+TGG + chr7_1:80331962-80331981 None:intergenic 40.0%
! GATTTGGTTGCGTCAAAATG+TGG + chr7_1:80331977-80331996 None:intergenic 40.0%
! AAAGAAGGTTGTTTCACTGC+TGG + chr7_1:80332005-80332024 None:intergenic 40.0%
! AAATAATGGAGTGAGCATGG+AGG + chr7_1:80332028-80332047 None:intergenic 40.0%
! CACAAATAATGGAGTGAGCA+TGG + chr7_1:80332031-80332050 None:intergenic 40.0%
AGCTTAGTGACTTGACACAT+GGG - chr7_1:80332194-80332213 Msa1042390:intron 40.0%
TCAAAAGAGGGCCAAAACAT+AGG - chr7_1:80332241-80332260 Msa1042390:intron 40.0%
CAAAAGAGGGCCAAAACATA+GGG - chr7_1:80332242-80332261 Msa1042390:intron 40.0%
AAAAGAGGGCCAAAACATAG+GGG - chr7_1:80332243-80332262 Msa1042390:intron 40.0%
TGGCCCCCTAAGAAAAAAAA+TGG + chr7_1:80332279-80332298 None:intergenic 40.0%
ATCTGAAAGCGATGATCATG+TGG - chr7_1:80332842-80332861 Msa1042390:CDS 40.0%
TCTGAAAGCGATGATCATGT+GGG - chr7_1:80332843-80332862 Msa1042390:CDS 40.0%
GACAATGCTGAAAACAATGG+TGG - chr7_1:80332939-80332958 Msa1042390:intron 40.0%
TGAAATTGAGAGACATGTGG+AGG + chr7_1:80332970-80332989 None:intergenic 40.0%
TGTCTCTCAATTTCAATGCC+AGG - chr7_1:80332975-80332994 Msa1042390:intron 40.0%
CTTCAATTGAATTGGATCGG+AGG - chr7_1:80333128-80333147 Msa1042390:CDS 40.0%
AATTGAATTGGATCGGAGGA+TGG - chr7_1:80333132-80333151 Msa1042390:CDS 40.0%
AATCAAGTGTCTTCAATGGG+AGG - chr7_1:80333164-80333183 Msa1042390:CDS 40.0%
AACTTAGGTGCTAATGTAGC+TGG + chr7_1:80333279-80333298 None:intergenic 40.0%
GTCCAACATTTCTCCAAAAG+TGG + chr7_1:80333349-80333368 None:intergenic 40.0%
ATTGATACAAAACGTGCCAG+TGG + chr7_1:80333371-80333390 None:intergenic 40.0%
! TTCTTGACTAGTTGTTGGGA+AGG - chr7_1:80333405-80333424 Msa1042390:five_prime_UTR 40.0%
ACTAGTTGTTGGGAAGGAAA+AGG - chr7_1:80333411-80333430 Msa1042390:five_prime_UTR 40.0%
AGTACTTGGTTAGGTGACTG+TGG + chr7_1:80327618-80327637 None:intergenic 45.0%
GTTTCTCTGACTCATGCTGT+TGG + chr7_1:80327747-80327766 None:intergenic 45.0%
! TGAGCAGGGTGAAGAAGTTT+TGG + chr7_1:80327787-80327806 None:intergenic 45.0%
! AAGGAAGTGCAGGTGATTGT+TGG + chr7_1:80327819-80327838 None:intergenic 45.0%
! GGTACAAACAAAGGAAGTGC+AGG + chr7_1:80327829-80327848 None:intergenic 45.0%
!! CAAGTTGGTGACTTTGGTGT+TGG + chr7_1:80327857-80327876 None:intergenic 45.0%
GCCATTTCAGCTTATCTCAG+TGG - chr7_1:80328058-80328077 Msa1042390:CDS 45.0%
GCCACTGAGATAAGCTGAAA+TGG + chr7_1:80328062-80328081 None:intergenic 45.0%
GTGGCAAGAACTTGAGTTAC+AGG - chr7_1:80328077-80328096 Msa1042390:CDS 45.0%
TAGTGTTGCAAAGTGGGTAC+TGG - chr7_1:80328424-80328443 Msa1042390:intron 45.0%
AGTGTTGCAAAGTGGGTACT+GGG - chr7_1:80328425-80328444 Msa1042390:intron 45.0%
GGAGAACAGACGGTAAAAAG+TGG - chr7_1:80328484-80328503 Msa1042390:intron 45.0%
GAACAGACGGTAAAAAGTGG+CGG - chr7_1:80328487-80328506 Msa1042390:intron 45.0%
TGTGAAAGACACATGCATCG+TGG - chr7_1:80328543-80328562 Msa1042390:intron 45.0%
AAACCGTTCAAGAAAGCCTG+TGG - chr7_1:80328569-80328588 Msa1042390:intron 45.0%
GTTCCACAGGCTTTCTTGAA+CGG + chr7_1:80328575-80328594 None:intergenic 45.0%
CTTCCCACACCAACTAGTAA+TGG - chr7_1:80328594-80328613 Msa1042390:intron 45.0%
TTGGTAGGGAACTACCATTG+TGG + chr7_1:80328760-80328779 None:intergenic 45.0%
ACAATGGTAGTTCCCTACCA+AGG - chr7_1:80328759-80328778 Msa1042390:intron 45.0%
CCATTTAAGGAGTCCTTGGT+AGG + chr7_1:80328775-80328794 None:intergenic 45.0%
CCTACCAAGGACTCCTTAAA+TGG - chr7_1:80328772-80328791 Msa1042390:intron 45.0%
TCTCTCTCCTGGGTAACTAA+CGG + chr7_1:80329097-80329116 None:intergenic 45.0%
ATAAGGACTCTCTCTCTCCT+GGG + chr7_1:80329107-80329126 None:intergenic 45.0%
TATAAGGACTCTCTCTCTCC+TGG + chr7_1:80329108-80329127 None:intergenic 45.0%
TAGTTGCTCGTTCCTTAACG+GGG - chr7_1:80329128-80329147 Msa1042390:intron 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG - chr7_1:80329189-80329208 Msa1042390:intron 45.0%
!! TTAAGAGCATCTCCAATGGG+GGG + chr7_1:80329216-80329235 None:intergenic 45.0%
TTTAGACCCGTTGACCAAAC+CGG - chr7_1:80329430-80329449 Msa1042390:intron 45.0%
GTAGAAACCGAGATGCAAAC+GGG + chr7_1:80329460-80329479 None:intergenic 45.0%
CGTAGAAACCGAGATGCAAA+CGG + chr7_1:80329461-80329480 None:intergenic 45.0%
CGTTTGCATCTCGGTTTCTA+CGG - chr7_1:80329459-80329478 Msa1042390:intron 45.0%
! CTCGGTTTCTACGGATTGTT+CGG - chr7_1:80329468-80329487 Msa1042390:intron 45.0%
! TCTACGGATTGTTCGGTTTC+CGG - chr7_1:80329475-80329494 Msa1042390:intron 45.0%
! TGTGTGTTGCTGTTACAGCA+GGG + chr7_1:80330062-80330081 None:intergenic 45.0%
GCCGTCCGATCATAAATAAG+TGG + chr7_1:80330172-80330191 None:intergenic 45.0%
AGATTTCCTGCTGTAACAGC+AGG + chr7_1:80330213-80330232 None:intergenic 45.0%
AAAGAGGGCCAAAACATAGG+GGG + chr7_1:80332244-80332263 None:intergenic 45.0%
CAGCTAAGTGACTTGACACA+TGG + chr7_1:80330595-80330614 None:intergenic 45.0%
TGTGTCAAGTCACTTAGCTG+AGG - chr7_1:80330595-80330614 Msa1042390:intron 45.0%
TACTAAAACCGTACCACTCG+CGG - chr7_1:80330707-80330726 Msa1042390:intron 45.0%
! TGTTTTATCCGCGAGTGGTA+CGG + chr7_1:80330718-80330737 None:intergenic 45.0%
TACGGTGTTCCGCCTATATA+CGG + chr7_1:80330762-80330781 None:intergenic 45.0%
!!! AGAGGTGGGTTGTTTTGGTT+TGG + chr7_1:80330925-80330944 None:intergenic 45.0%
! TGGTGCATTTTTGTGAGGCA+GGG + chr7_1:80331128-80331147 None:intergenic 45.0%
! TTGGTGCATTTTTGTGAGGC+AGG + chr7_1:80331129-80331148 None:intergenic 45.0%
!! TGCGTTGGTGCATTTTTGTG+AGG + chr7_1:80331133-80331152 None:intergenic 45.0%
!! GCAGCTCTGTTGGTGTTTTT+AGG + chr7_1:80331159-80331178 None:intergenic 45.0%
GAGCTGATATGTTGTGTGTG+TGG + chr7_1:80331181-80331200 None:intergenic 45.0%
CAGCTCTCTGCTAAAAAACC+AGG - chr7_1:80331195-80331214 Msa1042390:intron 45.0%
GGATGTATGTGAGAGCTATG+TGG + chr7_1:80331302-80331321 None:intergenic 45.0%
CGTTGGAGAAGAAGAGAAAG+AGG + chr7_1:80331441-80331460 None:intergenic 45.0%
TTCTCTTCTTCTCCAACGGT+AGG - chr7_1:80331443-80331462 Msa1042390:intron 45.0%
TGGTAAACCAAAGAAGGTGG+CGG + chr7_1:80331487-80331506 None:intergenic 45.0%
CTGTTGGTACCAAAGAAGGT+GGG + chr7_1:80331529-80331548 None:intergenic 45.0%
ACTGTTGGTACCAAAGAAGG+TGG + chr7_1:80331530-80331549 None:intergenic 45.0%
GAAAAAAGTGGCGAGAATGC+CGG + chr7_1:80331615-80331634 None:intergenic 45.0%
CCGCAAGTTAAGAGGAAGAA+GGG + chr7_1:80331668-80331687 None:intergenic 45.0%
! CCCTTCTTCCTCTTAACTTG+CGG - chr7_1:80331665-80331684 Msa1042390:intron 45.0%
ACCGCAAGTTAAGAGGAAGA+AGG + chr7_1:80331669-80331688 None:intergenic 45.0%
CTACACAACCGCAAGTTAAG+AGG + chr7_1:80331676-80331695 None:intergenic 45.0%
AGCAGCACCATGAATAGAGT+TGG - chr7_1:80331736-80331755 Msa1042390:intron 45.0%
AGCAACCAATAAGTGAAGGC+GGG + chr7_1:80331775-80331794 None:intergenic 45.0%
CAGCAACCAATAAGTGAAGG+CGG + chr7_1:80331776-80331795 None:intergenic 45.0%
AGCATACTAAACCTGGACCA+TGG + chr7_1:80331817-80331836 None:intergenic 45.0%
TGGTTGCGTCAAAATGTGGT+GGG + chr7_1:80331973-80331992 None:intergenic 45.0%
TTGGTTGCGTCAAAATGTGG+TGG + chr7_1:80331974-80331993 None:intergenic 45.0%
TTCACTGCTGGAAGAGGATT+TGG + chr7_1:80331993-80332012 None:intergenic 45.0%
TGTGTCAAGTCACTAAGCTG+AGG + chr7_1:80332193-80332212 None:intergenic 45.0%
CAGCTTAGTGACTTGACACA+TGG - chr7_1:80332193-80332212 Msa1042390:intron 45.0%
AAAGAGGGCCAAAACATAGG+GGG - chr7_1:80332244-80332263 Msa1042390:intron 45.0%
!! CTCTTCAATTTTGGTCCCAG+TGG + chr7_1:80332814-80332833 None:intergenic 45.0%
AAAGCGATGATCATGTGGGT+GGG - chr7_1:80332847-80332866 Msa1042390:CDS 45.0%
! GTGTCATTGAAACTGTCCAC+TGG - chr7_1:80333023-80333042 Msa1042390:intron 45.0%
AGGCCCACATTCTCATTTCT+TGG + chr7_1:80333068-80333087 None:intergenic 45.0%
GTTGCTGCTCAGTTTGTACT+AGG + chr7_1:80333088-80333107 None:intergenic 45.0%
GTTTCAGAACCAGAACAACG+TGG + chr7_1:80333257-80333276 None:intergenic 45.0%
!! TGGGGGTTTGTTTCCACTTT+TGG - chr7_1:80333333-80333352 Msa1042390:five_prime_UTR 45.0%
TTGGAGAAATGTTGGACCAC+TGG - chr7_1:80333352-80333371 Msa1042390:five_prime_UTR 45.0%
ACTTGGTTAGGTGACTGTGG+TGG + chr7_1:80327615-80327634 None:intergenic 50.0%
GAGATAGTGCAGTGAAGTGC+AGG + chr7_1:80327690-80327709 None:intergenic 50.0%
CACTGCACTATCTCTCTCCA+TGG - chr7_1:80327696-80327715 Msa1042390:CDS 50.0%
!! GTTGGTGGTGTTGATGAGCA+GGG + chr7_1:80327801-80327820 None:intergenic 50.0%
!! TGTTGGTGGTGTTGATGAGC+AGG + chr7_1:80327802-80327821 None:intergenic 50.0%
GAAGTGCAGGTGATTGTTGG+TGG + chr7_1:80327816-80327835 None:intergenic 50.0%
!! GTGACTTTGGTGTTGGGTTG+AGG + chr7_1:80327850-80327869 None:intergenic 50.0%
! GTGTTGCAAAGTGGGTACTG+GGG - chr7_1:80328426-80328445 Msa1042390:intron 50.0%
TAAAAAGTGGCGGTGTGCGA+GGG - chr7_1:80328497-80328516 Msa1042390:intron 50.0%
! CCGCCATTACTAGTTGGTGT+GGG + chr7_1:80328600-80328619 None:intergenic 50.0%
CCCACACCAACTAGTAATGG+CGG - chr7_1:80328597-80328616 Msa1042390:intron 50.0%
! ACCGCCATTACTAGTTGGTG+TGG + chr7_1:80328601-80328620 None:intergenic 50.0%
ACACCAACTAGTAATGGCGG+TGG - chr7_1:80328600-80328619 Msa1042390:intron 50.0%
GATCCACCGCCATTACTAGT+TGG + chr7_1:80328606-80328625 None:intergenic 50.0%
GGGTCCATTTAAGGAGTCCT+TGG + chr7_1:80328779-80328798 None:intergenic 50.0%
TGTCACGTGGGGTCCATTTA+AGG + chr7_1:80328788-80328807 None:intergenic 50.0%
CTCTCTCCTGGGTAACTAAC+GGG + chr7_1:80329096-80329115 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+CGG - chr7_1:80329166-80329185 Msa1042390:intron 50.0%
TCCAATGGAGGGTCCTTAAC+GGG - chr7_1:80329167-80329186 Msa1042390:intron 50.0%
TGGGGGGTCCTTACTTAACA+AGG + chr7_1:80329200-80329219 None:intergenic 50.0%
GTTAAGTAAGGACCCCCCAT+TGG - chr7_1:80329201-80329220 Msa1042390:intron 50.0%
!! CTAGTAGCTTTGGGTACCGA+CGG - chr7_1:80329346-80329365 Msa1042390:intron 50.0%
GGGTAAAAACGGACGGATAC+GGG + chr7_1:80329386-80329405 None:intergenic 50.0%
CGGGTAAAAACGGACGGATA+CGG + chr7_1:80329387-80329406 None:intergenic 50.0%
! CTACGGATTGTTCGGTTTCC+GGG - chr7_1:80329476-80329495 Msa1042390:intron 50.0%
TCTGGCAAATGATGTCCCAC+TGG + chr7_1:80329844-80329863 None:intergenic 50.0%
ATTGGCCATGCTCCCTCATT+GGG + chr7_1:80330025-80330044 None:intergenic 50.0%
TATTGGCCATGCTCCCTCAT+TGG + chr7_1:80330026-80330045 None:intergenic 50.0%
! ATGAGGGAGCATGGCCAATA+TGG - chr7_1:80330026-80330045 Msa1042390:intron 50.0%
! TGAGGGAGCATGGCCAATAT+GGG - chr7_1:80330027-80330046 Msa1042390:intron 50.0%
AGGGAATCCAGGTCCCATAT+TGG + chr7_1:80330043-80330062 None:intergenic 50.0%
! CTGTGTGTTGCTGTTACAGC+AGG + chr7_1:80330063-80330082 None:intergenic 50.0%
CAACACACAGTTTCACGCTG+TGG - chr7_1:80330073-80330092 Msa1042390:intron 50.0%
GCAGAACAAATCTGAGCCGT+TGG + chr7_1:80330124-80330143 None:intergenic 50.0%
AAGCATCCTGCTGTTACAGC+AGG - chr7_1:80330204-80330223 Msa1042390:intron 50.0%
!! ACTTGACACATGGGCGTTGA+TGG + chr7_1:80332203-80332222 None:intergenic 50.0%
GTCAAGTCACTTAGCTGAGG+TGG - chr7_1:80330598-80330617 Msa1042390:intron 50.0%
ACTTAGCTGAGGTGGCATCA+GGG - chr7_1:80330606-80330625 Msa1042390:intron 50.0%
!! AATCCGGTGCCGTATATAGG+CGG - chr7_1:80330750-80330769 Msa1042390:intron 50.0%
!!! TTGGGAGAGGTGGGTTGTTT+TGG + chr7_1:80330930-80330949 None:intergenic 50.0%
! GGTGCATTTTTGTGAGGCAG+GGG + chr7_1:80331127-80331146 None:intergenic 50.0%
!! TGCTACTTTGGTGGAGTTCC+TGG + chr7_1:80331216-80331235 None:intergenic 50.0%
!! CAAGGCTGTTGCTACTTTGG+TGG + chr7_1:80331225-80331244 None:intergenic 50.0%
ACACACATGTATGCCACCCA+GGG + chr7_1:80331327-80331346 None:intergenic 50.0%
TACACACATGTATGCCACCC+AGG + chr7_1:80331328-80331347 None:intergenic 50.0%
TTTGGCGAAGATCCTACCGT+TGG + chr7_1:80331458-80331477 None:intergenic 50.0%
! TAAACCAAAGAAGGTGGCGG+AGG + chr7_1:80331484-80331503 None:intergenic 50.0%
TAGTGTGCAGAGATCGGAAG+AGG + chr7_1:80331717-80331736 None:intergenic 50.0%
TGCTGCTAGTGTGCAGAGAT+CGG + chr7_1:80331723-80331742 None:intergenic 50.0%
ACCTTCCCGCCTTCACTTAT+TGG - chr7_1:80331767-80331786 Msa1042390:intron 50.0%
ACCAATAAGTGAAGGCGGGA+AGG + chr7_1:80331771-80331790 None:intergenic 50.0%
CTGGACCATGGAGCTTAGAT+TGG + chr7_1:80331805-80331824 None:intergenic 50.0%
CAATCTAAGCTCCATGGTCC+AGG - chr7_1:80331803-80331822 Msa1042390:intron 50.0%
CTGGTGGAGCATACTAAACC+TGG + chr7_1:80331824-80331843 None:intergenic 50.0%
!! AGCTTGCTGGCCAACTGAAT+CGG - chr7_1:80331863-80331882 Msa1042390:intron 50.0%
! TGCGTCAAAATGTGGTGGGA+AGG + chr7_1:80331969-80331988 None:intergenic 50.0%
! GGTTGTTTCACTGCTGGAAG+AGG + chr7_1:80331999-80332018 None:intergenic 50.0%
GAGTGAGCATGGAGGAAAGA+AGG + chr7_1:80332020-80332039 None:intergenic 50.0%
GTCAAGTCACTAAGCTGAGG+TGG + chr7_1:80332190-80332209 None:intergenic 50.0%
GAAAGCGATGATCATGTGGG+TGG - chr7_1:80332846-80332865 Msa1042390:CDS 50.0%
AAGCGATGATCATGTGGGTG+GGG - chr7_1:80332848-80332867 Msa1042390:CDS 50.0%
TCAGACTCTTGCAGTGATCG+TGG + chr7_1:80332921-80332940 None:intergenic 50.0%
TGGTTCTTCTGCATAGCCAG+TGG + chr7_1:80333042-80333061 None:intergenic 50.0%
TGGATCGGAGGATGGAATTC+AGG - chr7_1:80333140-80333159 Msa1042390:CDS 50.0%
GATCTAAGTGCCTCAGCAAG+TGG + chr7_1:80333191-80333210 None:intergenic 50.0%
CATCAGTTGCCACGTTGTTC+TGG - chr7_1:80333245-80333264 Msa1042390:exon 50.0%
!! CAAAGTGGGTACTGGGGAAG+AGG - chr7_1:80328432-80328451 Msa1042390:intron 55.0%
GTACTGGGGAAGAGGAGCAA+TGG - chr7_1:80328440-80328459 Msa1042390:intron 55.0%
GTAAAAAGTGGCGGTGTGCG+AGG - chr7_1:80328496-80328515 Msa1042390:intron 55.0%
GTTGGTGTGGGAAGTTCCAC+AGG + chr7_1:80328588-80328607 None:intergenic 55.0%
CGTTAAGGACCCTCCATTGG+AGG + chr7_1:80329168-80329187 None:intergenic 55.0%
CCAATGGAGGGTCCTTAACG+GGG - chr7_1:80329168-80329187 Msa1042390:intron 55.0%
ACAAGGACCACTCCCCGTTA+AGG + chr7_1:80329183-80329202 None:intergenic 55.0%
AAACCGAGATGCAAACGGGC+GGG + chr7_1:80329456-80329475 None:intergenic 55.0%
GAAACCGAGATGCAAACGGG+CGG + chr7_1:80329457-80329476 None:intergenic 55.0%
TGGGGGTCCGTATCTCAGTT+TGG + chr7_1:80330006-80330025 None:intergenic 55.0%
TGAGATACGGACCCCCAATG+AGG - chr7_1:80330009-80330028 Msa1042390:intron 55.0%
GAGATACGGACCCCCAATGA+GGG - chr7_1:80330010-80330029 Msa1042390:intron 55.0%
TTGGCCATGCTCCCTCATTG+GGG + chr7_1:80330024-80330043 None:intergenic 55.0%
AGCATGGCCAATATGGGACC+TGG - chr7_1:80330033-80330052 Msa1042390:intron 55.0%
GCTGTTACAGCAGGGAATCC+AGG + chr7_1:80330054-80330073 None:intergenic 55.0%
CACTTAGCTGAGGTGGCATC+AGG - chr7_1:80330605-80330624 Msa1042390:intron 55.0%
CTTAGCTGAGGTGGCATCAG+GGG - chr7_1:80330607-80330626 Msa1042390:intron 55.0%
GTTCCGCCTATATACGGCAC+CGG + chr7_1:80330756-80330775 None:intergenic 55.0%
CAGGTCTAGTTGGGAGAGGT+GGG + chr7_1:80330939-80330958 None:intergenic 55.0%
TCAGGTCTAGTTGGGAGAGG+TGG + chr7_1:80330940-80330959 None:intergenic 55.0%
GCTTCAGGTCTAGTTGGGAG+AGG + chr7_1:80330943-80330962 None:intergenic 55.0%
! TTGTGAGGCAGGGGTATGCA+TGG + chr7_1:80331118-80331137 None:intergenic 55.0%
TGTGTGTGTGGCAGCTCTGT+TGG + chr7_1:80331169-80331188 None:intergenic 55.0%
TCTCACATACATCCGCCCCT+GGG - chr7_1:80331308-80331327 Msa1042390:intron 55.0%
CACACATGTATGCCACCCAG+GGG + chr7_1:80331326-80331345 None:intergenic 55.0%
!! AGAAGGTGGCGGAGGATGTT+TGG + chr7_1:80331476-80331495 None:intergenic 55.0%
ACATCCTCCGCCACCTTCTT+TGG - chr7_1:80331477-80331496 Msa1042390:intron 55.0%
ATGCTCCACCAGAACAGCCT+CGG - chr7_1:80331832-80331851 Msa1042390:intron 55.0%
TCAGGAAACCGAGGCTGTTC+TGG + chr7_1:80331843-80331862 None:intergenic 55.0%
CAGCAAGCTTCAGGAAACCG+AGG + chr7_1:80331852-80331871 None:intergenic 55.0%
CTCGGTTTCCTGAAGCTTGC+TGG - chr7_1:80331850-80331869 Msa1042390:intron 55.0%
TCAGTTGGCCAGCAAGCTTC+AGG + chr7_1:80331861-80331880 None:intergenic 55.0%
!! CTTGACACATGGGCGTTGAC+TGG - chr7_1:80332204-80332223 Msa1042390:intron 55.0%
GATGATCATGTGGGTGGGGA+TGG - chr7_1:80332852-80332871 Msa1042390:CDS 55.0%
GACCAGGTGGGCAAATGCTA+AGG - chr7_1:80332877-80332896 Msa1042390:CDS 55.0%
TGCCTTAGCATTTGCCCACC+TGG + chr7_1:80332882-80332901 None:intergenic 55.0%
! AATGGGAGGACCACTTGCTG+AGG - chr7_1:80333178-80333197 Msa1042390:CDS 55.0%
GGAGCAATGGATCCAGAGCC+AGG - chr7_1:80328453-80328472 Msa1042390:intron 60.0%
ATCCAGAGCCAGGTCGTTGC+CGG - chr7_1:80328463-80328482 Msa1042390:intron 60.0%
TCTGTTCTCCGGCAACGACC+TGG + chr7_1:80328474-80328493 None:intergenic 60.0%
GGTCGTTGCCGGAGAACAGA+CGG - chr7_1:80328474-80328493 Msa1042390:intron 60.0%
GTGGGACCCGTTAGTTACCC+AGG - chr7_1:80329087-80329106 Msa1042390:intron 60.0%
CCCCGTTAAGGACCCTCCAT+TGG + chr7_1:80329171-80329190 None:intergenic 60.0%
CGGATTGTTCGGTTTCCGGG+CGG - chr7_1:80329479-80329498 Msa1042390:intron 60.0%
GGATTGTTCGGTTTCCGGGC+GGG - chr7_1:80329480-80329499 Msa1042390:intron 60.0%
ACAAGATTTCCCGACCCGCC+CGG + chr7_1:80329497-80329516 None:intergenic 60.0%
TGGCCATGCTCCCTCATTGG+GGG + chr7_1:80330023-80330042 None:intergenic 60.0%
CTCTCACATACATCCGCCCC+TGG - chr7_1:80331307-80331326 Msa1042390:intron 60.0%
ACATGTATGCCACCCAGGGG+CGG + chr7_1:80331323-80331342 None:intergenic 60.0%
GGAAACCGAGGCTGTTCTGG+TGG + chr7_1:80331840-80331859 None:intergenic 60.0%
TGGTCCCAGTGGAGCTGCAT+GGG + chr7_1:80332803-80332822 None:intergenic 60.0%
TTGGTCCCAGTGGAGCTGCA+TGG + chr7_1:80332804-80332823 None:intergenic 60.0%
GTGGGGATGGAAGACCAGGT+GGG - chr7_1:80332865-80332884 Msa1042390:CDS 60.0%
TGTGCGAGGGATGTGGTGGC+TGG - chr7_1:80328510-80328529 Msa1042390:intron 65.0%
GGAGGGTCCTTAACGGGGAG+TGG - chr7_1:80329173-80329192 Msa1042390:intron 65.0%
TGTTCGGTTTCCGGGCGGGT+CGG - chr7_1:80329484-80329503 Msa1042390:intron 65.0%
GGACCCCCAATGAGGGAGCA+TGG - chr7_1:80330017-80330036 Msa1042390:intron 65.0%
AGCTGAGGTGGCATCAGGGG+CGG - chr7_1:80330610-80330629 Msa1042390:intron 65.0%
CACATACATCCGCCCCTGGG+TGG - chr7_1:80331311-80331330 Msa1042390:intron 65.0%
GGTCCCAGTGGAGCTGCATG+GGG + chr7_1:80332802-80332821 None:intergenic 65.0%
GTGGGTGGGGATGGAAGACC+AGG - chr7_1:80332861-80332880 Msa1042390:CDS 65.0%
GGTGGGGATGGAAGACCAGG+TGG - chr7_1:80332864-80332883 Msa1042390:CDS 65.0%
CTCCGGCAACGACCTGGCTC+TGG + chr7_1:80328468-80328487 None:intergenic 70.0%
GTGGCGGTGTGCGAGGGATG+TGG - chr7_1:80328503-80328522 Msa1042390:intron 70.0%
GCGGTGTGCGAGGGATGTGG+TGG - chr7_1:80328506-80328525 Msa1042390:intron 70.0%
!! GGCGGGCCGGTTTGGTCAAC+GGG + chr7_1:80329439-80329458 None:intergenic 70.0%
!! GGGCGGGCCGGTTTGGTCAA+CGG + chr7_1:80329440-80329459 None:intergenic 70.0%
TGCAAACGGGCGGGCCGGTT+TGG + chr7_1:80329447-80329466 None:intergenic 70.0%
CGAGATGCAAACGGGCGGGC+CGG + chr7_1:80329452-80329471 None:intergenic 70.0%
CGGCCCGCCCGTTTGCATCT+CGG - chr7_1:80329450-80329469 Msa1042390:intron 70.0%
GTTCGGTTTCCGGGCGGGTC+GGG - chr7_1:80329485-80329504 Msa1042390:intron 70.0%
TGGGCCCCATGCAGCTCCAC+TGG - chr7_1:80332795-80332814 Msa1042390:CDS 70.0%
GGGCCCCATGCAGCTCCACT+GGG - chr7_1:80332796-80332815 Msa1042390:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 80327534 80333440 80327534 ID=Msa1042390;Name=Msa1042390
chr7_1 mRNA 80327534 80333440 80327534 ID=Msa1042390-mRNA-1;Parent=Msa1042390;Name=Msa1042390-mRNA-1;_AED=0.12;_eAED=0.12;_QI=181|0.66|0.75|1|0.66|0.75|4|145|359
chr7_1 exon 80327534 80328165 80327534 ID=Msa1042390-mRNA-1:exon:21910;Parent=Msa1042390-mRNA-1
chr7_1 exon 80332331 80332547 80332331 ID=Msa1042390-mRNA-1:exon:21909;Parent=Msa1042390-mRNA-1
chr7_1 exon 80332755 80332931 80332755 ID=Msa1042390-mRNA-1:exon:21908;Parent=Msa1042390-mRNA-1
chr7_1 exon 80333061 80333440 80333061 ID=Msa1042390-mRNA-1:exon:21907;Parent=Msa1042390-mRNA-1
chr7_1 five_prime_UTR 80333260 80333440 80333260 ID=Msa1042390-mRNA-1:five_prime_utr;Parent=Msa1042390-mRNA-1
chr7_1 CDS 80333061 80333259 80333061 ID=Msa1042390-mRNA-1:cds;Parent=Msa1042390-mRNA-1
chr7_1 CDS 80332755 80332931 80332755 ID=Msa1042390-mRNA-1:cds;Parent=Msa1042390-mRNA-1
chr7_1 CDS 80332331 80332547 80332331 ID=Msa1042390-mRNA-1:cds;Parent=Msa1042390-mRNA-1
chr7_1 CDS 80327679 80328165 80327679 ID=Msa1042390-mRNA-1:cds;Parent=Msa1042390-mRNA-1
chr7_1 three_prime_UTR 80327534 80327678 80327534 ID=Msa1042390-mRNA-1:three_prime_utr;Parent=Msa1042390-mRNA-1
Gene Sequence

>Msa1042390

ATGGACTTTCATACGAAACAATGGAGAAACCAACAGCATGAGTCAGAGAAACAACATTCCACAAAGATGCCAAAACTTCTTCACCCTGCTCATCAACACCACCAACAATCACCTGCACTTCCTTTGTTTGTACCTCAACCCAACACCAAAGTCACCAACTTGTCAGATTCAGCATTAGCTTCCAACAACAGATTTCCTAGAATGGGAATGGGAAGCCATTTCAGCTTATCTCAGTGGCAAGAACTTGAGTTACAGGCTTTGATATTTAGATACATGTTGGTTGGTGCTTCTGTTCCTCCTGAACTTCTTCAACCTATCAAGAAAAGTCTTCTTCATTCATCTCCTTATTTTCTTCATCATTATCAACCTACAGCATTGTTGCAAAGTGGGTACTGGGGAAGAGGAGCAATGGATCCAGAGCCAGGTCGTTGCCGGAGAACAGACGGTAAAAAGTGGCGGTGTGCGAGGGATGTGGTGGCTGGACAAAAGTACTGTGAAAGACACATGCATCGTGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTTCCCACACCAACTAGTAATGGCGGTGGATCTTCATCTTTCTCTGCTTTCTCCACTGGGACCAAAATTGAAGAGAAGAGCTTATCTGAAAGCGATGATCATGTGGGTGGGGATGGAAGACCAGGTGGGCAAATGCTAAGGCATTTTTTTGACGATTGGCCACGATCACTGCAAGAGTCTGACAATGCTGAAAACAATGGTGGGTCATCCTCCACATGTCTCTCAATTTCAATGCCAGGAAATAACAACATTTCTTCTTCAGATGTGTCATTGAAACTGTCCACTGGCTATGCAGAAGAACCATGTCCAAGAAATGAGAATGTGGGCCTAGTACAAACTGAGCAGCAACAGCAACAGCAACAACAACAACTTCAATTGAATTGGATCGGAGGATGGAATTCAGGTAATCAAGTGTCTTCAATGGGAGGACCACTTGCTGAGGCACTTAGATCATCTACTTCAACTTCTTCACCTACTAGTGTTTTACATCAGTTGCCACGTTGTTCTGGTTCTGAAACCAGCTACATTAGCACCTAA
Protein sequence

>Msa1042390

MDFHTKQWRNQQHESEKQHSTKMPKLLHPAHQHHQQSPALPLFVPQPNTKVTNLSDSALASNNRFPRMGMGSHFSLSQWQELELQALIFRYMLVGASVPPELLQPIKKSLLHSSPYFLHHYQPTALLQSGYWGRGAMDPEPGRCRRTDGKKWRCARDVVAGQKYCERHMHRGRNRSRKPVELPTPTSNGGGSSSFSAFSTGTKIEEKSLSESDDHVGGDGRPGGQMLRHFFDDWPRSLQESDNAENNGGSSSTCLSISMPGNNNISSSDVSLKLSTGYAEEPCPRNENVGLVQTEQQQQQQQQQLQLNWIGGWNSGNQVSSMGGPLAEALRSSTSTSSPTSVLHQLPRCSGSETSYIST*