Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167210 | XP_013450098.1 | 90.789 | 228 | 13 | 3 | 1 | 223 | 1 | 225 | 1.32e-135 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167210 | sp|Q9SJR5|GRF3_ARATH | 59.799 | 199 | 56 | 7 | 1 | 184 | 1 | 190 | 4.95e-64 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167210 | A0A072U430 | 90.789 | 228 | 13 | 3 | 1 | 223 | 1 | 225 | 6.32e-136 | 395 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1167210 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1042390 | Msa1167210 | 0.901414 | 2.745563e-78 | -8.615850e-47 |
| Msa1125090 | Msa1167210 | 0.819335 | 1.226217e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167210 | MtrunA17_Chr7g0265931 | 90.789 | 228 | 13 | 3 | 1 | 223 | 1 | 225 | 1.37e-139 | 395 |
| Msa1167210 | MtrunA17_Chr4g0021261 | 61.607 | 112 | 40 | 3 | 74 | 184 | 26 | 135 | 1.51e-40 | 141 |
| Msa1167210 | MtrunA17_Chr4g0070591 | 50.340 | 147 | 51 | 5 | 63 | 202 | 6 | 137 | 4.18e-39 | 138 |
| Msa1167210 | MtrunA17_Chr8g0343881 | 58.407 | 113 | 43 | 3 | 72 | 182 | 10 | 120 | 4.85e-37 | 132 |
| Msa1167210 | MtrunA17_Chr2g0300511 | 55.556 | 126 | 41 | 4 | 63 | 182 | 4 | 120 | 1.02e-36 | 131 |
| Msa1167210 | MtrunA17_Chr5g0409471 | 62.037 | 108 | 29 | 4 | 74 | 181 | 17 | 112 | 1.13e-36 | 130 |
| Msa1167210 | MtrunA17_Chr1g0152191 | 56.250 | 112 | 45 | 2 | 74 | 181 | 145 | 256 | 4.07e-34 | 128 |
| Msa1167210 | MtrunA17_Chr3g0127641 | 46.087 | 115 | 36 | 2 | 74 | 184 | 113 | 205 | 1.95e-27 | 108 |
| Msa1167210 | MtrunA17_Chr8g0351521 | 40.260 | 154 | 67 | 5 | 74 | 221 | 55 | 189 | 5.13e-21 | 90.5 |
| Msa1167210 | MtrunA17_Chr8g0351521 | 60.784 | 51 | 20 | 0 | 137 | 187 | 302 | 352 | 6.67e-15 | 72.8 |
| Msa1167210 | MtrunA17_Chr8g0351291 | 58.000 | 50 | 21 | 0 | 137 | 186 | 51 | 100 | 6.36e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167210 | AT2G36400.1 | 59.799 | 199 | 56 | 7 | 1 | 184 | 1 | 190 | 5.04e-65 | 206 |
| Msa1167210 | AT3G52910.1 | 58.209 | 201 | 57 | 8 | 1 | 181 | 1 | 194 | 4.84e-62 | 198 |
| Msa1167210 | AT4G37740.1 | 46.053 | 152 | 66 | 5 | 69 | 214 | 160 | 301 | 1.02e-34 | 129 |
| Msa1167210 | AT3G13960.1 | 54.545 | 110 | 46 | 3 | 74 | 181 | 17 | 124 | 1.62e-31 | 119 |
| Msa1167210 | AT2G22840.1 | 55.556 | 117 | 42 | 4 | 69 | 181 | 129 | 239 | 8.93e-30 | 115 |
| Msa1167210 | AT4G24150.3 | 47.826 | 115 | 56 | 2 | 71 | 181 | 109 | 223 | 1.80e-26 | 105 |
| Msa1167210 | AT4G24150.2 | 47.826 | 115 | 56 | 2 | 71 | 181 | 147 | 261 | 3.75e-26 | 105 |
| Msa1167210 | AT2G06200.1 | 46.774 | 124 | 41 | 4 | 74 | 179 | 7 | 123 | 7.84e-26 | 100 |
| Msa1167210 | AT2G06200.2 | 50.427 | 117 | 47 | 4 | 74 | 179 | 46 | 162 | 8.97e-26 | 101 |
| Msa1167210 | AT5G53660.1 | 47.899 | 119 | 43 | 3 | 74 | 190 | 60 | 161 | 1.24e-25 | 102 |
| Msa1167210 | AT4G24150.1 | 39.286 | 140 | 56 | 2 | 71 | 181 | 147 | 286 | 9.93e-23 | 95.9 |
| Msa1167210 | AT2G45480.2 | 48.039 | 102 | 53 | 0 | 77 | 178 | 28 | 129 | 2.73e-22 | 92.8 |
| Msa1167210 | AT2G45480.3 | 48.039 | 102 | 53 | 0 | 77 | 178 | 28 | 129 | 1.28e-21 | 92.4 |
| Msa1167210 | AT2G45480.3 | 45.977 | 87 | 31 | 3 | 120 | 199 | 286 | 363 | 1.14e-17 | 81.3 |
| Msa1167210 | AT2G45480.1 | 48.039 | 102 | 53 | 0 | 77 | 178 | 26 | 127 | 1.31e-21 | 92.4 |
| Msa1167210 | AT2G45480.1 | 45.977 | 87 | 31 | 3 | 120 | 199 | 284 | 361 | 1.27e-17 | 81.3 |
| Msa1167210 | AT2G06200.3 | 71.111 | 45 | 11 | 1 | 137 | 179 | 7 | 51 | 5.09e-16 | 73.2 |
Find 63 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCAAGAACTTGAGTTAC+AGG | 0.267624 | 7_4:-59546059 | Msa1167210:CDS |
| TGAGCAGGGTGAAGAAGTTT+TGG | 0.323925 | 7_4:+59546365 | None:intergenic |
| TGATAATGATGAAGAAAATA+AGG | 0.326826 | 7_4:+59545950 | None:intergenic |
| TTGATAGGTTGAAGAAGTTC+AGG | 0.344449 | 7_4:+59545995 | None:intergenic |
| TACAGAGCTTCTGTACAAAA+AGG | 0.356258 | 7_4:-59546596 | None:intergenic |
| ATCCAGAGCCAGGTCGTTGC+CGG | 0.359541 | 7_4:-59545673 | Msa1167210:CDS |
| TAGTGTTGCAAAGTGGGTAC+TGG | 0.393066 | 7_4:-59545712 | Msa1167210:CDS |
| CTCCGGCAACGACCTGGCTC+TGG | 0.400600 | 7_4:+59545671 | None:intergenic |
| TGTGCGAGGGATGTGGTGGC+TGG | 0.410154 | 7_4:-59545626 | Msa1167210:CDS |
| TGTTGGTGGTGTTGATGAGC+AGG | 0.411541 | 7_4:+59546350 | None:intergenic |
| CAAGTTGGTGACTTTGGTGT+TGG | 0.425449 | 7_4:+59546295 | None:intergenic |
| ATCTGACAAGTTGGTGACTT+TGG | 0.426402 | 7_4:+59546289 | None:intergenic |
| GCCACTGAGATAAGCTGAAA+TGG | 0.433868 | 7_4:+59546077 | None:intergenic |
| GTGACTTTGGTGTTGGGTTG+AGG | 0.434579 | 7_4:+59546302 | None:intergenic |
| GAGATAGTGCAGTGAAGTGC+AGG | 0.446015 | 7_4:+59546462 | None:intergenic |
| CTTACTAGGAAATCTGTTGT+TGG | 0.450424 | 7_4:+59546253 | None:intergenic |
| GGAGCAATGGATCCAGAGCC+AGG | 0.451345 | 7_4:-59545683 | Msa1167210:CDS |
| GTTTCTCTGACTCATGCTGT+TGG | 0.459512 | 7_4:+59546405 | None:intergenic |
| AAGTTGGTGACTTTGGTGTT+GGG | 0.464829 | 7_4:+59546296 | None:intergenic |
| TACATTATTAGGAATGGGAA+TGG | 0.465443 | 7_4:-59546104 | Msa1167210:intron |
| ACTAGTACTAGTACTTGGTT+AGG | 0.477138 | 7_4:+59546525 | None:intergenic |
| CAAAGTGGGTACTGGGGAAG+AGG | 0.492409 | 7_4:-59545704 | Msa1167210:CDS |
| GTGGCGGTGTGCGAGGGATG+TGG | 0.497767 | 7_4:-59545633 | Msa1167210:CDS |
| AGTGTTGCAAAGTGGGTACT+GGG | 0.501618 | 7_4:-59545711 | Msa1167210:CDS |
| GTTGGTGTGGGAAGTTCCAC+AGG | 0.502197 | 7_4:+59545551 | None:intergenic |
| TGATTAAAGTGAAGATCAAA+AGG | 0.508625 | 7_4:+59545443 | None:intergenic |
| GTTCCACAGGCTTTCTTGAA+CGG | 0.512655 | 7_4:+59545564 | None:intergenic |
| TGAAGTGCAGGTATTAAGAT+TGG | 0.513205 | 7_4:+59546474 | None:intergenic |
| TCTGTTCTCCGGCAACGACC+TGG | 0.516750 | 7_4:+59545665 | None:intergenic |
| ACATTATTAGGAATGGGAAT+GGG | 0.520045 | 7_4:-59546103 | Msa1167210:intron |
| TTTGATATTTAGATACATGT+TGG | 0.524543 | 7_4:-59546035 | Msa1167210:CDS |
| TTGTTTCGTATGAAAGTCCA+TGG | 0.526188 | 7_4:+59546436 | None:intergenic |
| AAATTACTAGTACTAGTACT+TGG | 0.528959 | 7_4:+59546520 | None:intergenic |
| TTGATCTTCACTTTAATCAA+CGG | 0.532715 | 7_4:-59545439 | Msa1167210:CDS |
| AAGGAAGTGCAGGTGATTGT+TGG | 0.537153 | 7_4:+59546333 | None:intergenic |
| CTTCCCACACCAACTAGTAA+TGG | 0.551902 | 7_4:-59545542 | Msa1167210:CDS |
| ATCAAAAGGAGATTTGAATG+AGG | 0.554725 | 7_4:+59545457 | None:intergenic |
| GTTGGTGGTGTTGATGAGCA+GGG | 0.556192 | 7_4:+59546351 | None:intergenic |
| ACCGCCATTACTAGTTGGTG+TGG | 0.561256 | 7_4:+59545538 | None:intergenic |
| ATATTTAGATACATGTTGGT+TGG | 0.568638 | 7_4:-59546031 | Msa1167210:CDS |
| CACTGCACTATCTCTCTCCA+TGG | 0.572642 | 7_4:-59546453 | Msa1167210:exon |
| AAAAGGAGATTTGAATGAGG+AGG | 0.578590 | 7_4:+59545460 | None:intergenic |
| TAATGCTGAATCTGACAAGT+TGG | 0.579106 | 7_4:+59546280 | None:intergenic |
| GTACTGGGGAAGAGGAGCAA+TGG | 0.581936 | 7_4:-59545696 | Msa1167210:CDS |
| GATCCACCGCCATTACTAGT+TGG | 0.583483 | 7_4:+59545533 | None:intergenic |
| GGTACAAACAAAGGAAGTGC+AGG | 0.589399 | 7_4:+59546323 | None:intergenic |
| GAAGTGCAGGTGATTGTTGG+TGG | 0.603904 | 7_4:+59546336 | None:intergenic |
| GCCATTTCAGCTTATCTCAG+TGG | 0.605314 | 7_4:-59546078 | Msa1167210:CDS |
| ACACCAACTAGTAATGGCGG+TGG | 0.613692 | 7_4:-59545536 | Msa1167210:CDS |
| GGTCGTTGCCGGAGAACAGA+CGG | 0.624707 | 7_4:-59545662 | Msa1167210:CDS |
| AGTGCAGGTATTAAGATTGG+TGG | 0.626695 | 7_4:+59546477 | None:intergenic |
| TGGACTTTCATACGAAACAA+TGG | 0.628358 | 7_4:-59546433 | Msa1167210:CDS |
| CCGCCATTACTAGTTGGTGT+GGG | 0.647594 | 7_4:+59545539 | None:intergenic |
| TTGGGTTGAGGTACAAACAA+AGG | 0.648493 | 7_4:+59546314 | None:intergenic |
| AAACCGTTCAAGAAAGCCTG+TGG | 0.653157 | 7_4:-59545567 | Msa1167210:CDS |
| ATAGGTTGAAGAAGTTCAGG+AGG | 0.653453 | 7_4:+59545998 | None:intergenic |
| GAATGAAACTTACATGCTGT+AGG | 0.658238 | 7_4:+59545926 | None:intergenic |
| AGTACTTGGTTAGGTGACTG+TGG | 0.660838 | 7_4:+59546534 | None:intergenic |
| CCCACACCAACTAGTAATGG+CGG | 0.678913 | 7_4:-59545539 | Msa1167210:CDS |
| AATGAGGAGGAAGTAACAAG+AGG | 0.678921 | 7_4:+59545473 | None:intergenic |
| ACTTGGTTAGGTGACTGTGG+TGG | 0.690181 | 7_4:+59546537 | None:intergenic |
| GTGTTGCAAAGTGGGTACTG+GGG | 0.700679 | 7_4:-59545710 | Msa1167210:CDS |
| TGTGAAAGACACATGCATCG+TGG | 0.747726 | 7_4:-59545593 | Msa1167210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACAAGTTCTTACATTATT+AGG | - | chr7_4:59545912-59545931 | Msa1167210:intron | 20.0% |
| !! | TTTGATATTTAGATACATGT+TGG | - | chr7_4:59545992-59546011 | Msa1167210:CDS | 20.0% |
| !!! | TGATAATGATGAAGAAAATA+AGG | + | chr7_4:59546080-59546099 | None:intergenic | 20.0% |
| !! | AAGTAAAAATAATGTTACTG+GGG | + | chr7_4:59546231-59546250 | None:intergenic | 20.0% |
| !! | CAAGTAAAAATAATGTTACT+GGG | + | chr7_4:59546232-59546251 | None:intergenic | 20.0% |
| !! | TAACAAGTTCTTACATTATT+AGG | - | chr7_4:59545912-59545931 | Msa1167210:intron | 20.0% |
| !! | TTTGATATTTAGATACATGT+TGG | - | chr7_4:59545992-59546011 | Msa1167210:CDS | 20.0% |
| !!! | TGATAATGATGAAGAAAATA+AGG | + | chr7_4:59546080-59546099 | None:intergenic | 20.0% |
| !! | AAGTAAAAATAATGTTACTG+GGG | + | chr7_4:59546231-59546250 | None:intergenic | 20.0% |
| !! | CAAGTAAAAATAATGTTACT+GGG | + | chr7_4:59546232-59546251 | None:intergenic | 20.0% |
| ! | AAATTACTAGTACTAGTACT+TGG | + | chr7_4:59545510-59545529 | None:intergenic | 25.0% |
| ! | CTAACTCAAAATAACTTACT+AGG | + | chr7_4:59545791-59545810 | None:intergenic | 25.0% |
| ! | AGTTCTTACATTATTAGGAA+TGG | - | chr7_4:59545917-59545936 | Msa1167210:intron | 25.0% |
| ! | GTTCTTACATTATTAGGAAT+GGG | - | chr7_4:59545918-59545937 | Msa1167210:intron | 25.0% |
| ! | ATATTTAGATACATGTTGGT+TGG | - | chr7_4:59545996-59546015 | Msa1167210:CDS | 25.0% |
| !!! | TGTGTTTTTTGGTTTTGTTT+TGG | + | chr7_4:59546164-59546183 | None:intergenic | 25.0% |
| !!! | AGAAAAGAAAGTGTGTTTTT+TGG | + | chr7_4:59546175-59546194 | None:intergenic | 25.0% |
| ! | AGTAAAAATAATGTTACTGG+GGG | + | chr7_4:59546230-59546249 | None:intergenic | 25.0% |
| ! | CCAAGTAAAAATAATGTTAC+TGG | + | chr7_4:59546233-59546252 | None:intergenic | 25.0% |
| !!! | CCAGTAACATTATTTTTACT+TGG | - | chr7_4:59546230-59546249 | Msa1167210:intron | 25.0% |
| !! | TTTTTATTAGTGTTGCAAAG+TGG | - | chr7_4:59546308-59546327 | Msa1167210:CDS | 25.0% |
| !! | TTTTATTAGTGTTGCAAAGT+GGG | - | chr7_4:59546309-59546328 | Msa1167210:CDS | 25.0% |
| ! | TGATTAAAGTGAAGATCAAA+AGG | + | chr7_4:59546587-59546606 | None:intergenic | 25.0% |
| ! | TTGATCTTCACTTTAATCAA+CGG | - | chr7_4:59546588-59546607 | Msa1167210:five_prime_UTR | 25.0% |
| ! | AAATTACTAGTACTAGTACT+TGG | + | chr7_4:59545510-59545529 | None:intergenic | 25.0% |
| ! | CTAACTCAAAATAACTTACT+AGG | + | chr7_4:59545791-59545810 | None:intergenic | 25.0% |
| ! | AGTTCTTACATTATTAGGAA+TGG | - | chr7_4:59545917-59545936 | Msa1167210:intron | 25.0% |
| ! | GTTCTTACATTATTAGGAAT+GGG | - | chr7_4:59545918-59545937 | Msa1167210:intron | 25.0% |
| ! | ATATTTAGATACATGTTGGT+TGG | - | chr7_4:59545996-59546015 | Msa1167210:CDS | 25.0% |
| !!! | TGTGTTTTTTGGTTTTGTTT+TGG | + | chr7_4:59546164-59546183 | None:intergenic | 25.0% |
| !!! | AGAAAAGAAAGTGTGTTTTT+TGG | + | chr7_4:59546175-59546194 | None:intergenic | 25.0% |
| ! | AGTAAAAATAATGTTACTGG+GGG | + | chr7_4:59546230-59546249 | None:intergenic | 25.0% |
| ! | CCAAGTAAAAATAATGTTAC+TGG | + | chr7_4:59546233-59546252 | None:intergenic | 25.0% |
| !!! | CCAGTAACATTATTTTTACT+TGG | - | chr7_4:59546230-59546249 | Msa1167210:intron | 25.0% |
| !! | TTTTTATTAGTGTTGCAAAG+TGG | - | chr7_4:59546308-59546327 | Msa1167210:CDS | 25.0% |
| !! | TTTTATTAGTGTTGCAAAGT+GGG | - | chr7_4:59546309-59546328 | Msa1167210:CDS | 25.0% |
| ! | TGATTAAAGTGAAGATCAAA+AGG | + | chr7_4:59546587-59546606 | None:intergenic | 25.0% |
| ! | TTGATCTTCACTTTAATCAA+CGG | - | chr7_4:59546588-59546607 | Msa1167210:five_prime_UTR | 25.0% |
| ! | AAAAACCAAGTACTGTGTAT+GGG | + | chr7_4:59545464-59545483 | None:intergenic | 30.0% |
| ! | TAAAAACCAAGTACTGTGTA+TGG | + | chr7_4:59545465-59545484 | None:intergenic | 30.0% |
| ! | CTACTACATCTTTCTTCTTT+TGG | - | chr7_4:59545878-59545897 | Msa1167210:intron | 30.0% |
| !! | GTAAGAACTTGTTAAAGTGT+TGG | + | chr7_4:59545906-59545925 | None:intergenic | 30.0% |
| TACATTATTAGGAATGGGAA+TGG | - | chr7_4:59545923-59545942 | Msa1167210:intron | 30.0% | |
| ACATTATTAGGAATGGGAAT+GGG | - | chr7_4:59545924-59545943 | Msa1167210:intron | 30.0% | |
| ! | TGAAGAAGACTTTTCTTGAT+AGG | + | chr7_4:59546050-59546069 | None:intergenic | 30.0% |
| CATGTAAGTTTCATTCTACT+TGG | - | chr7_4:59546108-59546127 | Msa1167210:intron | 30.0% | |
| ATTCTACTTGGTTTCTTACA+CGG | - | chr7_4:59546120-59546139 | Msa1167210:intron | 30.0% | |
| !!! | TTGTTTTGGAGTATGTGATA+TGG | + | chr7_4:59546150-59546169 | None:intergenic | 30.0% |
| ! | ACTTTCTTTTCTTCGTGTTT+TGG | - | chr7_4:59546183-59546202 | Msa1167210:intron | 30.0% |
| ! | CTTTCTTTTCTTCGTGTTTT+GGG | - | chr7_4:59546184-59546203 | Msa1167210:intron | 30.0% |
| ATCAAAAGGAGATTTGAATG+AGG | + | chr7_4:59546573-59546592 | None:intergenic | 30.0% | |
| ! | AAAAACCAAGTACTGTGTAT+GGG | + | chr7_4:59545464-59545483 | None:intergenic | 30.0% |
| ! | TAAAAACCAAGTACTGTGTA+TGG | + | chr7_4:59545465-59545484 | None:intergenic | 30.0% |
| ! | CTACTACATCTTTCTTCTTT+TGG | - | chr7_4:59545878-59545897 | Msa1167210:intron | 30.0% |
| !! | GTAAGAACTTGTTAAAGTGT+TGG | + | chr7_4:59545906-59545925 | None:intergenic | 30.0% |
| TACATTATTAGGAATGGGAA+TGG | - | chr7_4:59545923-59545942 | Msa1167210:intron | 30.0% | |
| ACATTATTAGGAATGGGAAT+GGG | - | chr7_4:59545924-59545943 | Msa1167210:intron | 30.0% | |
| ! | TGAAGAAGACTTTTCTTGAT+AGG | + | chr7_4:59546050-59546069 | None:intergenic | 30.0% |
| CATGTAAGTTTCATTCTACT+TGG | - | chr7_4:59546108-59546127 | Msa1167210:intron | 30.0% | |
| ATTCTACTTGGTTTCTTACA+CGG | - | chr7_4:59546120-59546139 | Msa1167210:intron | 30.0% | |
| !!! | TTGTTTTGGAGTATGTGATA+TGG | + | chr7_4:59546150-59546169 | None:intergenic | 30.0% |
| ! | ACTTTCTTTTCTTCGTGTTT+TGG | - | chr7_4:59546183-59546202 | Msa1167210:intron | 30.0% |
| ! | CTTTCTTTTCTTCGTGTTTT+GGG | - | chr7_4:59546184-59546203 | Msa1167210:intron | 30.0% |
| ATCAAAAGGAGATTTGAATG+AGG | + | chr7_4:59546573-59546592 | None:intergenic | 30.0% | |
| ACTAGTACTAGTACTTGGTT+AGG | + | chr7_4:59545505-59545524 | None:intergenic | 35.0% | |
| TGAAGTGCAGGTATTAAGAT+TGG | + | chr7_4:59545556-59545575 | None:intergenic | 35.0% | |
| TTGTTTCGTATGAAAGTCCA+TGG | + | chr7_4:59545594-59545613 | None:intergenic | 35.0% | |
| TGGACTTTCATACGAAACAA+TGG | - | chr7_4:59545594-59545613 | Msa1167210:CDS | 35.0% | |
| !! | AAGAAGTTTTGGCATCTTTG+TGG | + | chr7_4:59545654-59545673 | None:intergenic | 35.0% |
| TAATGCTGAATCTGACAAGT+TGG | + | chr7_4:59545750-59545769 | None:intergenic | 35.0% | |
| CTTACTAGGAAATCTGTTGT+TGG | + | chr7_4:59545777-59545796 | None:intergenic | 35.0% | |
| ! | TTGATAGGTTGAAGAAGTTC+AGG | + | chr7_4:59546035-59546054 | None:intergenic | 35.0% |
| GAATGAAACTTACATGCTGT+AGG | + | chr7_4:59546104-59546123 | None:intergenic | 35.0% | |
| AAAAGGAGATTTGAATGAGG+AGG | + | chr7_4:59546570-59546589 | None:intergenic | 35.0% | |
| ACTAGTACTAGTACTTGGTT+AGG | + | chr7_4:59545505-59545524 | None:intergenic | 35.0% | |
| TGAAGTGCAGGTATTAAGAT+TGG | + | chr7_4:59545556-59545575 | None:intergenic | 35.0% | |
| TTGTTTCGTATGAAAGTCCA+TGG | + | chr7_4:59545594-59545613 | None:intergenic | 35.0% | |
| TGGACTTTCATACGAAACAA+TGG | - | chr7_4:59545594-59545613 | Msa1167210:CDS | 35.0% | |
| !! | AAGAAGTTTTGGCATCTTTG+TGG | + | chr7_4:59545654-59545673 | None:intergenic | 35.0% |
| TAATGCTGAATCTGACAAGT+TGG | + | chr7_4:59545750-59545769 | None:intergenic | 35.0% | |
| CTTACTAGGAAATCTGTTGT+TGG | + | chr7_4:59545777-59545796 | None:intergenic | 35.0% | |
| ! | TTGATAGGTTGAAGAAGTTC+AGG | + | chr7_4:59546035-59546054 | None:intergenic | 35.0% |
| GAATGAAACTTACATGCTGT+AGG | + | chr7_4:59546104-59546123 | None:intergenic | 35.0% | |
| AAAAGGAGATTTGAATGAGG+AGG | + | chr7_4:59546570-59546589 | None:intergenic | 35.0% | |
| ! | GTTTTCCCATACACAGTACT+TGG | - | chr7_4:59545456-59545475 | Msa1167210:CDS | 40.0% |
| AGTGCAGGTATTAAGATTGG+TGG | + | chr7_4:59545553-59545572 | None:intergenic | 40.0% | |
| !! | TTGGGTTGAGGTACAAACAA+AGG | + | chr7_4:59545716-59545735 | None:intergenic | 40.0% |
| !! | AAGTTGGTGACTTTGGTGTT+GGG | + | chr7_4:59545734-59545753 | None:intergenic | 40.0% |
| !! | ATCTGACAAGTTGGTGACTT+TGG | + | chr7_4:59545741-59545760 | None:intergenic | 40.0% |
| ! | ATAGGTTGAAGAAGTTCAGG+AGG | + | chr7_4:59546032-59546051 | None:intergenic | 40.0% |
| ! | ACTTTTTACCGTCTGTTCTC+CGG | + | chr7_4:59546376-59546395 | None:intergenic | 40.0% |
| AATGAGGAGGAAGTAACAAG+AGG | + | chr7_4:59546557-59546576 | None:intergenic | 40.0% | |
| ! | GTTTTCCCATACACAGTACT+TGG | - | chr7_4:59545456-59545475 | Msa1167210:CDS | 40.0% |
| AGTGCAGGTATTAAGATTGG+TGG | + | chr7_4:59545553-59545572 | None:intergenic | 40.0% | |
| !! | TTGGGTTGAGGTACAAACAA+AGG | + | chr7_4:59545716-59545735 | None:intergenic | 40.0% |
| !! | AAGTTGGTGACTTTGGTGTT+GGG | + | chr7_4:59545734-59545753 | None:intergenic | 40.0% |
| !! | ATCTGACAAGTTGGTGACTT+TGG | + | chr7_4:59545741-59545760 | None:intergenic | 40.0% |
| ! | ATAGGTTGAAGAAGTTCAGG+AGG | + | chr7_4:59546032-59546051 | None:intergenic | 40.0% |
| ! | ACTTTTTACCGTCTGTTCTC+CGG | + | chr7_4:59546376-59546395 | None:intergenic | 40.0% |
| AATGAGGAGGAAGTAACAAG+AGG | + | chr7_4:59546557-59546576 | None:intergenic | 40.0% | |
| AGTACTTGGTTAGGTGACTG+TGG | + | chr7_4:59545496-59545515 | None:intergenic | 45.0% | |
| GTTTCTCTGACTCATGCTGT+TGG | + | chr7_4:59545625-59545644 | None:intergenic | 45.0% | |
| ! | TGAGCAGGGTGAAGAAGTTT+TGG | + | chr7_4:59545665-59545684 | None:intergenic | 45.0% |
| ! | AAGGAAGTGCAGGTGATTGT+TGG | + | chr7_4:59545697-59545716 | None:intergenic | 45.0% |
| ! | GGTACAAACAAAGGAAGTGC+AGG | + | chr7_4:59545707-59545726 | None:intergenic | 45.0% |
| !! | CAAGTTGGTGACTTTGGTGT+TGG | + | chr7_4:59545735-59545754 | None:intergenic | 45.0% |
| GCCATTTCAGCTTATCTCAG+TGG | - | chr7_4:59545949-59545968 | Msa1167210:CDS | 45.0% | |
| GCCACTGAGATAAGCTGAAA+TGG | + | chr7_4:59545953-59545972 | None:intergenic | 45.0% | |
| GTGGCAAGAACTTGAGTTAC+AGG | - | chr7_4:59545968-59545987 | Msa1167210:CDS | 45.0% | |
| TAGTGTTGCAAAGTGGGTAC+TGG | - | chr7_4:59546315-59546334 | Msa1167210:CDS | 45.0% | |
| AGTGTTGCAAAGTGGGTACT+GGG | - | chr7_4:59546316-59546335 | Msa1167210:CDS | 45.0% | |
| GGAGAACAGACGGTAAAAAG+TGG | - | chr7_4:59546375-59546394 | Msa1167210:CDS | 45.0% | |
| GAACAGACGGTAAAAAGTGG+CGG | - | chr7_4:59546378-59546397 | Msa1167210:CDS | 45.0% | |
| TGTGAAAGACACATGCATCG+TGG | - | chr7_4:59546434-59546453 | Msa1167210:CDS | 45.0% | |
| AAACCGTTCAAGAAAGCCTG+TGG | - | chr7_4:59546460-59546479 | Msa1167210:five_prime_UTR | 45.0% | |
| GTTCCACAGGCTTTCTTGAA+CGG | + | chr7_4:59546466-59546485 | None:intergenic | 45.0% | |
| CTTCCCACACCAACTAGTAA+TGG | - | chr7_4:59546485-59546504 | Msa1167210:five_prime_UTR | 45.0% | |
| AGTACTTGGTTAGGTGACTG+TGG | + | chr7_4:59545496-59545515 | None:intergenic | 45.0% | |
| GTTTCTCTGACTCATGCTGT+TGG | + | chr7_4:59545625-59545644 | None:intergenic | 45.0% | |
| ! | TGAGCAGGGTGAAGAAGTTT+TGG | + | chr7_4:59545665-59545684 | None:intergenic | 45.0% |
| ! | AAGGAAGTGCAGGTGATTGT+TGG | + | chr7_4:59545697-59545716 | None:intergenic | 45.0% |
| ! | GGTACAAACAAAGGAAGTGC+AGG | + | chr7_4:59545707-59545726 | None:intergenic | 45.0% |
| !! | CAAGTTGGTGACTTTGGTGT+TGG | + | chr7_4:59545735-59545754 | None:intergenic | 45.0% |
| GCCATTTCAGCTTATCTCAG+TGG | - | chr7_4:59545949-59545968 | Msa1167210:CDS | 45.0% | |
| GCCACTGAGATAAGCTGAAA+TGG | + | chr7_4:59545953-59545972 | None:intergenic | 45.0% | |
| GTGGCAAGAACTTGAGTTAC+AGG | - | chr7_4:59545968-59545987 | Msa1167210:CDS | 45.0% | |
| TAGTGTTGCAAAGTGGGTAC+TGG | - | chr7_4:59546315-59546334 | Msa1167210:CDS | 45.0% | |
| AGTGTTGCAAAGTGGGTACT+GGG | - | chr7_4:59546316-59546335 | Msa1167210:CDS | 45.0% | |
| GGAGAACAGACGGTAAAAAG+TGG | - | chr7_4:59546375-59546394 | Msa1167210:CDS | 45.0% | |
| GAACAGACGGTAAAAAGTGG+CGG | - | chr7_4:59546378-59546397 | Msa1167210:CDS | 45.0% | |
| TGTGAAAGACACATGCATCG+TGG | - | chr7_4:59546434-59546453 | Msa1167210:CDS | 45.0% | |
| AAACCGTTCAAGAAAGCCTG+TGG | - | chr7_4:59546460-59546479 | Msa1167210:five_prime_UTR | 45.0% | |
| GTTCCACAGGCTTTCTTGAA+CGG | + | chr7_4:59546466-59546485 | None:intergenic | 45.0% | |
| CTTCCCACACCAACTAGTAA+TGG | - | chr7_4:59546485-59546504 | Msa1167210:five_prime_UTR | 45.0% | |
| ACTTGGTTAGGTGACTGTGG+TGG | + | chr7_4:59545493-59545512 | None:intergenic | 50.0% | |
| GAGATAGTGCAGTGAAGTGC+AGG | + | chr7_4:59545568-59545587 | None:intergenic | 50.0% | |
| CACTGCACTATCTCTCTCCA+TGG | - | chr7_4:59545574-59545593 | Msa1167210:CDS | 50.0% | |
| !! | GTTGGTGGTGTTGATGAGCA+GGG | + | chr7_4:59545679-59545698 | None:intergenic | 50.0% |
| !! | TGTTGGTGGTGTTGATGAGC+AGG | + | chr7_4:59545680-59545699 | None:intergenic | 50.0% |
| GAAGTGCAGGTGATTGTTGG+TGG | + | chr7_4:59545694-59545713 | None:intergenic | 50.0% | |
| !! | GTGACTTTGGTGTTGGGTTG+AGG | + | chr7_4:59545728-59545747 | None:intergenic | 50.0% |
| ! | GTGTTGCAAAGTGGGTACTG+GGG | - | chr7_4:59546317-59546336 | Msa1167210:CDS | 50.0% |
| TAAAAAGTGGCGGTGTGCGA+GGG | - | chr7_4:59546388-59546407 | Msa1167210:CDS | 50.0% | |
| ! | CCGCCATTACTAGTTGGTGT+GGG | + | chr7_4:59546491-59546510 | None:intergenic | 50.0% |
| CCCACACCAACTAGTAATGG+CGG | - | chr7_4:59546488-59546507 | Msa1167210:five_prime_UTR | 50.0% | |
| ! | ACCGCCATTACTAGTTGGTG+TGG | + | chr7_4:59546492-59546511 | None:intergenic | 50.0% |
| ACACCAACTAGTAATGGCGG+TGG | - | chr7_4:59546491-59546510 | Msa1167210:five_prime_UTR | 50.0% | |
| GATCCACCGCCATTACTAGT+TGG | + | chr7_4:59546497-59546516 | None:intergenic | 50.0% | |
| ACTTGGTTAGGTGACTGTGG+TGG | + | chr7_4:59545493-59545512 | None:intergenic | 50.0% | |
| GAGATAGTGCAGTGAAGTGC+AGG | + | chr7_4:59545568-59545587 | None:intergenic | 50.0% | |
| CACTGCACTATCTCTCTCCA+TGG | - | chr7_4:59545574-59545593 | Msa1167210:CDS | 50.0% | |
| !! | GTTGGTGGTGTTGATGAGCA+GGG | + | chr7_4:59545679-59545698 | None:intergenic | 50.0% |
| !! | TGTTGGTGGTGTTGATGAGC+AGG | + | chr7_4:59545680-59545699 | None:intergenic | 50.0% |
| GAAGTGCAGGTGATTGTTGG+TGG | + | chr7_4:59545694-59545713 | None:intergenic | 50.0% | |
| !! | GTGACTTTGGTGTTGGGTTG+AGG | + | chr7_4:59545728-59545747 | None:intergenic | 50.0% |
| ! | GTGTTGCAAAGTGGGTACTG+GGG | - | chr7_4:59546317-59546336 | Msa1167210:CDS | 50.0% |
| TAAAAAGTGGCGGTGTGCGA+GGG | - | chr7_4:59546388-59546407 | Msa1167210:CDS | 50.0% | |
| ! | CCGCCATTACTAGTTGGTGT+GGG | + | chr7_4:59546491-59546510 | None:intergenic | 50.0% |
| CCCACACCAACTAGTAATGG+CGG | - | chr7_4:59546488-59546507 | Msa1167210:five_prime_UTR | 50.0% | |
| ! | ACCGCCATTACTAGTTGGTG+TGG | + | chr7_4:59546492-59546511 | None:intergenic | 50.0% |
| ACACCAACTAGTAATGGCGG+TGG | - | chr7_4:59546491-59546510 | Msa1167210:five_prime_UTR | 50.0% | |
| GATCCACCGCCATTACTAGT+TGG | + | chr7_4:59546497-59546516 | None:intergenic | 50.0% | |
| !! | CAAAGTGGGTACTGGGGAAG+AGG | - | chr7_4:59546323-59546342 | Msa1167210:CDS | 55.0% |
| GTACTGGGGAAGAGGAGCAA+TGG | - | chr7_4:59546331-59546350 | Msa1167210:CDS | 55.0% | |
| GTAAAAAGTGGCGGTGTGCG+AGG | - | chr7_4:59546387-59546406 | Msa1167210:CDS | 55.0% | |
| GTTGGTGTGGGAAGTTCCAC+AGG | + | chr7_4:59546479-59546498 | None:intergenic | 55.0% | |
| !! | CAAAGTGGGTACTGGGGAAG+AGG | - | chr7_4:59546323-59546342 | Msa1167210:CDS | 55.0% |
| GTACTGGGGAAGAGGAGCAA+TGG | - | chr7_4:59546331-59546350 | Msa1167210:CDS | 55.0% | |
| GTAAAAAGTGGCGGTGTGCG+AGG | - | chr7_4:59546387-59546406 | Msa1167210:CDS | 55.0% | |
| GTTGGTGTGGGAAGTTCCAC+AGG | + | chr7_4:59546479-59546498 | None:intergenic | 55.0% | |
| GGAGCAATGGATCCAGAGCC+AGG | - | chr7_4:59546344-59546363 | Msa1167210:CDS | 60.0% | |
| ATCCAGAGCCAGGTCGTTGC+CGG | - | chr7_4:59546354-59546373 | Msa1167210:CDS | 60.0% | |
| TCTGTTCTCCGGCAACGACC+TGG | + | chr7_4:59546365-59546384 | None:intergenic | 60.0% | |
| GGTCGTTGCCGGAGAACAGA+CGG | - | chr7_4:59546365-59546384 | Msa1167210:CDS | 60.0% | |
| GGAGCAATGGATCCAGAGCC+AGG | - | chr7_4:59546344-59546363 | Msa1167210:CDS | 60.0% | |
| ATCCAGAGCCAGGTCGTTGC+CGG | - | chr7_4:59546354-59546373 | Msa1167210:CDS | 60.0% | |
| TCTGTTCTCCGGCAACGACC+TGG | + | chr7_4:59546365-59546384 | None:intergenic | 60.0% | |
| GGTCGTTGCCGGAGAACAGA+CGG | - | chr7_4:59546365-59546384 | Msa1167210:CDS | 60.0% | |
| TGTGCGAGGGATGTGGTGGC+TGG | - | chr7_4:59546401-59546420 | Msa1167210:CDS | 65.0% | |
| TGTGCGAGGGATGTGGTGGC+TGG | - | chr7_4:59546401-59546420 | Msa1167210:CDS | 65.0% | |
| CTCCGGCAACGACCTGGCTC+TGG | + | chr7_4:59546359-59546378 | None:intergenic | 70.0% | |
| GTGGCGGTGTGCGAGGGATG+TGG | - | chr7_4:59546394-59546413 | Msa1167210:CDS | 70.0% | |
| GCGGTGTGCGAGGGATGTGG+TGG | - | chr7_4:59546397-59546416 | Msa1167210:CDS | 70.0% | |
| CTCCGGCAACGACCTGGCTC+TGG | + | chr7_4:59546359-59546378 | None:intergenic | 70.0% | |
| GTGGCGGTGTGCGAGGGATG+TGG | - | chr7_4:59546394-59546413 | Msa1167210:CDS | 70.0% | |
| GCGGTGTGCGAGGGATGTGG+TGG | - | chr7_4:59546397-59546416 | Msa1167210:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 59545436 | 59546613 | 59545436 | ID=Msa1167210;Name=Msa1167210 |
| chr7_4 | mRNA | 59545436 | 59546613 | 59545436 | ID=Msa1167210-mRNA-1;Parent=Msa1167210;Name=Msa1167210-mRNA-1;_AED=0.11;_eAED=0.11;_QI=157|1|0.66|1|1|1|3|0|223 |
| chr7_4 | exon | 59545436 | 59545731 | 59545436 | ID=Msa1167210-mRNA-1:exon:18526;Parent=Msa1167210-mRNA-1 |
| chr7_4 | exon | 59545939 | 59546115 | 59545939 | ID=Msa1167210-mRNA-1:exon:18525;Parent=Msa1167210-mRNA-1 |
| chr7_4 | exon | 59546258 | 59546613 | 59546258 | ID=Msa1167210-mRNA-1:exon:18524;Parent=Msa1167210-mRNA-1 |
| chr7_4 | five_prime_UTR | 59546457 | 59546613 | 59546457 | ID=Msa1167210-mRNA-1:five_prime_utr;Parent=Msa1167210-mRNA-1 |
| chr7_4 | CDS | 59546258 | 59546456 | 59546258 | ID=Msa1167210-mRNA-1:cds;Parent=Msa1167210-mRNA-1 |
| chr7_4 | CDS | 59545939 | 59546115 | 59545939 | ID=Msa1167210-mRNA-1:cds;Parent=Msa1167210-mRNA-1 |
| chr7_4 | CDS | 59545436 | 59545731 | 59545436 | ID=Msa1167210-mRNA-1:cds;Parent=Msa1167210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
