AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1042760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1042760 MtrunA17_Chr7g0263941 95.577 407 16 2 1 406 1 406 0.0 791
Msa1042760 MtrunA17_Chr1g0181381 57.841 491 99 13 3 387 4 492 2.01e-165 473
Msa1042760 MtrunA17_Chr2g0330171 63.251 283 84 4 33 302 45 320 1.16e-118 353
Msa1042760 MtrunA17_Chr4g0029521 73.756 221 45 6 7 218 6 222 3.73e-115 345
Msa1042760 MtrunA17_Chr8g0342421 57.402 331 102 8 27 329 55 374 3.25e-114 343
Msa1042760 MtrunA17_Chr1g0199101 87.500 168 20 1 34 200 47 214 3.86e-112 338
Msa1042760 MtrunA17_Chr1g0191991 56.369 314 111 4 34 328 63 369 6.89e-112 338
Msa1042760 MtrunA17_Chr4g0040571 83.051 177 29 1 28 204 34 209 2.19e-111 335
Msa1042760 MtrunA17_Chr1g0163001 82.967 182 27 2 23 204 34 211 2.45e-111 336
Msa1042760 MtrunA17_Chr1g0185121 54.942 344 107 9 30 340 36 364 1.66e-110 331
Msa1042760 MtrunA17_Chr1g0162971 82.941 170 29 0 34 203 41 210 7.75e-110 330
Msa1042760 MtrunA17_Chr8g0373541 73.333 210 50 2 11 220 15 218 1.23e-109 332
Msa1042760 MtrunA17_Chr1g0151351 62.191 283 84 9 30 308 38 301 6.40e-109 327
Msa1042760 MtrunA17_Chr1g0210821 86.875 160 21 0 37 196 47 206 4.56e-108 329
Msa1042760 MtrunA17_Chr7g0268961 52.113 355 125 9 44 365 32 374 1.93e-105 320
Msa1042760 MtrunA17_Chr2g0326381 62.403 258 74 8 34 283 32 274 5.57e-105 316
Msa1042760 MtrunA17_Chr3g0141431 46.212 396 156 12 21 373 6 387 1.72e-99 302
Msa1042760 MtrunA17_Chr2g0324991 87.023 131 17 0 45 175 3 133 3.32e-85 256
Msa1042760 MtrunA17_Chr6g0479921 64.557 158 55 1 32 188 27 184 2.34e-74 239
Msa1042760 MtrunA17_Chr8g0375521 64.103 156 54 2 34 187 27 182 3.35e-72 232
Msa1042760 MtrunA17_Chr3g0123941 37.821 156 89 3 39 186 113 268 4.36e-26 107
Msa1042760 MtrunA17_Chr1g0200421 35.762 151 85 4 48 186 236 386 1.10e-24 105
Msa1042760 MtrunA17_Chr2g0320341 34.839 155 87 4 43 183 224 378 1.45e-23 101
Msa1042760 MtrunA17_Chr8g0382121 35.948 153 87 5 42 183 104 256 3.85e-22 95.9
Msa1042760 MtrunA17_Chr5g0422571 34.254 181 102 6 21 191 78 251 8.61e-22 94.7
Msa1042760 MtrunA17_Chr1g0198651 34.503 171 95 5 28 186 84 249 5.69e-21 92.4
Msa1042760 MtrunA17_Chr4g0053341 35.762 151 87 5 45 186 69 218 2.20e-20 89.4
Msa1042760 MtrunA17_Chr4g0026521 36.301 146 83 5 50 186 118 262 2.53e-19 87.8
Msa1042760 MtrunA17_Chr2g0321291 34.054 185 103 8 50 223 133 309 3.14e-19 87.8
Msa1042760 MtrunA17_Chr8g0352011 36.301 146 83 5 50 186 166 310 3.16e-19 88.2
Msa1042760 MtrunA17_Chr7g0258011 34.932 146 85 5 50 186 176 320 5.80e-19 87.4
Msa1042760 MtrunA17_Chr1g0173841 34.932 146 85 5 50 186 215 359 1.93e-18 86.3
Msa1042760 MtrunA17_Chr2g0328921 34.932 146 85 5 50 186 138 282 2.80e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1042760 AT5G03150.1 61.489 309 71 9 3 283 4 292 1.27e-117 352
Msa1042760 AT5G03150.1 42.143 140 41 9 285 388 367 502 7.48e-11 64.3
Msa1042760 AT3G50700.1 85.549 173 25 0 24 196 24 196 1.90e-113 339
Msa1042760 AT5G66730.1 75.728 206 43 2 11 209 8 213 1.46e-111 336
Msa1042760 AT1G55110.3 62.799 293 84 8 30 306 58 341 1.75e-111 335
Msa1042760 AT1G55110.1 62.799 293 84 8 30 306 58 341 1.75e-111 335
Msa1042760 AT1G55110.2 62.799 293 84 8 30 306 58 341 1.75e-111 335
Msa1042760 AT5G44160.1 52.676 355 109 8 28 329 32 380 4.81e-111 334
Msa1042760 AT3G45260.2 84.181 177 23 2 33 204 38 214 1.44e-108 327
Msa1042760 AT3G45260.1 84.181 177 23 2 33 204 38 214 1.44e-108 327
Msa1042760 AT1G03840.1 78.610 187 38 2 28 213 36 221 1.57e-108 328
Msa1042760 AT3G13810.6 86.826 167 21 1 31 196 48 214 3.97e-106 322
Msa1042760 AT3G13810.4 86.826 167 21 1 31 196 67 233 4.13e-106 323
Msa1042760 AT3G13810.1 86.826 167 21 1 31 196 67 233 4.13e-106 323
Msa1042760 AT3G13810.5 86.826 167 21 1 31 196 62 228 4.15e-106 323
Msa1042760 AT1G14580.1 82.738 168 26 1 29 196 51 215 5.41e-106 321
Msa1042760 AT1G14580.2 82.738 168 26 1 29 196 51 215 5.41e-106 321
Msa1042760 AT2G02070.2 83.529 170 26 1 34 203 52 219 6.44e-106 325
Msa1042760 AT2G02070.1 83.529 170 26 1 34 203 52 219 6.44e-106 325
Msa1042760 AT1G14580.3 82.738 168 26 1 29 196 65 229 6.85e-106 321
Msa1042760 AT1G03840.2 77.540 187 38 3 28 213 36 219 7.19e-105 319
Msa1042760 AT2G02080.1 70.647 201 46 3 7 197 20 217 9.75e-105 319
Msa1042760 AT2G02080.4 70.647 201 46 3 7 197 20 217 9.75e-105 319
Msa1042760 AT2G02080.5 70.647 201 46 3 7 197 20 217 9.75e-105 319
Msa1042760 AT2G02080.3 70.647 201 46 3 7 197 20 217 9.75e-105 319
Msa1042760 AT4G02670.1 81.714 175 31 1 34 207 53 227 1.09e-104 315
Msa1042760 AT4G02670.2 81.714 175 31 1 34 207 55 229 1.31e-104 315
Msa1042760 AT5G60470.2 75.521 192 38 3 21 203 24 215 4.26e-104 316
Msa1042760 AT5G60470.3 75.521 192 38 3 21 203 20 211 7.31e-104 315
Msa1042760 AT5G44160.2 51.622 339 106 7 44 329 8 341 5.42e-103 312
Msa1042760 AT3G13810.3 88.235 153 17 1 45 196 68 220 8.50e-98 301
Msa1042760 AT3G13810.2 88.235 153 17 1 45 196 82 234 9.74e-98 301
Msa1042760 AT5G60470.1 80.745 161 29 2 45 203 46 206 1.04e-94 291
Msa1042760 AT2G02080.6 81.295 139 26 0 58 196 1 139 2.51e-88 275
Msa1042760 AT2G02080.2 81.295 139 26 0 58 196 1 139 2.51e-88 275
Msa1042760 AT1G68130.1 56.842 190 74 3 32 219 39 222 1.19e-74 239
Msa1042760 AT1G25250.3 64.780 159 53 2 32 187 31 189 6.14e-74 236
Msa1042760 AT2G01940.1 63.190 163 58 2 32 192 42 204 1.34e-73 237
Msa1042760 AT2G01940.3 62.195 164 59 3 32 192 42 205 5.67e-70 227
Msa1042760 AT1G25250.1 65.306 147 48 2 44 187 20 166 4.32e-69 223
Msa1042760 AT1G68130.2 52.817 142 59 3 80 219 1 136 1.13e-45 160
Msa1042760 AT2G01940.2 60.870 115 43 2 80 192 1 115 3.02e-44 157
Msa1042760 AT1G25250.2 62.162 111 39 2 80 187 1 111 3.14e-44 156
Msa1042760 AT1G34370.3 29.918 244 124 8 43 244 14 252 1.51e-24 102
Msa1042760 AT1G34370.2 29.918 244 124 8 43 244 224 462 4.22e-24 104
Msa1042760 AT1G34370.1 29.918 244 124 8 43 244 224 462 4.22e-24 104
Msa1042760 AT5G22890.1 32.530 166 96 4 35 186 191 354 1.36e-22 98.6
Msa1042760 AT1G13290.1 34.211 152 88 5 55 195 93 243 2.21e-19 88.6
Msa1042760 AT1G08290.1 35.849 159 85 7 44 186 155 312 1.49e-18 86.7
Msa1042760 AT1G34790.1 33.333 180 104 7 47 218 129 300 1.59e-18 85.9
Msa1042760 AT3G20880.1 34.247 146 86 5 50 186 243 387 3.41e-18 86.3
Msa1042760 AT1G51220.1 33.562 146 87 5 50 186 165 309 5.37e-18 85.1
Msa1042760 AT3G57670.1 34.247 146 86 5 50 186 204 348 7.42e-18 85.1

Find 98 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGTGGCCATATAGTTTA+TGG 0.179946 7_1:-81001963 None:intergenic
TTGCTGGTTTGTGGTGGATT+AGG 0.210609 7_1:-81002255 None:intergenic
CCATGATGCGGCCAGGGCCT+TGG 0.232187 7_1:+81002619 Msa1042760:CDS
AGATTGAACTGCATATTTCT+TGG 0.249648 7_1:-81002714 None:intergenic
TGCTCACAAATGAATATTCT+TGG 0.256662 7_1:+81002168 Msa1042760:exon
GCTAAAATGTTTCTTTATTC+CGG 0.260327 7_1:-81002651 None:intergenic
TAGATTTCTCTTCTTCTTGC+TGG 0.261742 7_1:-81002271 None:intergenic
CTTCAGAAAGCAGCTCAAAT+TGG 0.266190 7_1:+81003892 Msa1042760:CDS
ACTCATCATCGATGAACTTA+TGG 0.281450 7_1:-81004175 None:intergenic
TGCTGGTTTGTGGTGGATTA+GGG 0.287287 7_1:-81002254 None:intergenic
TATTAACCTCATCATGGTTT+TGG 0.287752 7_1:-81004002 None:intergenic
TTCGTCGCCATTAGAGTCTT+TGG 0.293737 7_1:-81002440 None:intergenic
GCTGAAGATTCTGATCTCTT+TGG 0.295858 7_1:-81002496 None:intergenic
GTTTGTGGTGGATTAGGGTT+AGG 0.305769 7_1:-81002249 None:intergenic
CAACAAAGAACCAAGGAAAA+AGG 0.327722 7_1:+81002565 Msa1042760:CDS
CTCTTCTTCTTGCTGGTTTG+TGG 0.328936 7_1:-81002264 None:intergenic
TATTTGACGACTCTTCATTC+TGG 0.329154 7_1:-81003630 None:intergenic
TTAATATTACCTGGTGTTCC+TGG 0.358554 7_1:-81002294 None:intergenic
GAAAACATGGTGAGAAGAAA+TGG 0.363622 7_1:+81002675 Msa1042760:CDS
AAACCATGATGAGGTTAATA+TGG 0.368833 7_1:+81004005 Msa1042760:CDS
CATGATGCGGCCAGGGCCTT+GGG 0.370145 7_1:+81002620 Msa1042760:CDS
AGGTGAAAACAAAGGCTTAT+TGG 0.372642 7_1:-81002100 None:intergenic
TCACAACCCCATAAACTATA+TGG 0.374855 7_1:+81001955 Msa1042760:five_prime_UTR
ATATAGTCAACACTTAATTA+AGG 0.380532 7_1:-81004242 None:intergenic
TTCTGGAAATTTAGAGTTGT+AGG 0.385136 7_1:-81003613 None:intergenic
AAAGTGGCCATATAGTTTAT+GGG 0.400863 7_1:-81001962 None:intergenic
GCTCTTGAGGTAGAAATTGA+TGG 0.404206 7_1:-81004137 None:intergenic
GTGTCCACCATGATGCGGCC+AGG 0.413040 7_1:+81002612 Msa1042760:CDS
TCTTTCTCCAAAGACTCTAA+TGG 0.414643 7_1:+81002433 Msa1042760:CDS
TGCATATTTCGCAGACGAAT+CGG 0.417602 7_1:-81002463 None:intergenic
TCACTTGATCATGTTTCATC+AGG 0.423280 7_1:+81003811 Msa1042760:CDS
TTTGTGGTGGATTAGGGTTA+GGG 0.429876 7_1:-81002248 None:intergenic
AATATGCAGTTCAATCTGAT+TGG 0.433651 7_1:+81002720 Msa1042760:CDS
TGGTGGACACAGGTCTTCTC+CGG 0.437364 7_1:-81002599 None:intergenic
TTCAACCACAGTGACAAGTT+TGG 0.441620 7_1:-81003754 None:intergenic
GACCTTTGCTTTAGCTTCCA+TGG 0.442243 7_1:-81002542 None:intergenic
AGTTTAAATCAATTCAATGC+TGG 0.449709 7_1:+81004195 Msa1042760:CDS
ATGTTTGAGATGAATGAAAA+AGG 0.453554 7_1:+81004325 Msa1042760:three_prime_UTR
TTGAAGTTTGTCAAAACCTC+CGG 0.458884 7_1:-81002217 None:intergenic
GGTGAGGTCACCCAAGGCCC+TGG 0.470064 7_1:-81002630 None:intergenic
GATAATGTTTGTGATAGTAG+TGG 0.474671 7_1:+81004292 Msa1042760:three_prime_UTR
GTGGAAGAGGATAGTGAAAA+GGG 0.477404 7_1:-81002195 None:intergenic
TTCTTCTTGCTGGTTTGTGG+TGG 0.478291 7_1:-81002261 None:intergenic
CTATGGTTGGTAATTCTAGT+GGG 0.487415 7_1:+81004088 Msa1042760:CDS
GTTTAAATCAATTCAATGCT+GGG 0.488084 7_1:+81004196 Msa1042760:CDS
TTTGCTTTAGCTTCCATGGT+AGG 0.488944 7_1:-81002538 None:intergenic
GTCAAAACCTCCGGTGGAAG+AGG 0.490780 7_1:-81002208 None:intergenic
AGGGCCTTGGGTGACCTCAC+CGG 0.495108 7_1:+81002632 Msa1042760:CDS
CCAAGGCCCTGGCCGCATCA+TGG 0.496782 7_1:-81002619 None:intergenic
TGTCCACCATGATGCGGCCA+GGG 0.498285 7_1:+81002613 Msa1042760:CDS
GCAAACTTTGCTAGCTCTTG+AGG 0.498977 7_1:-81004150 None:intergenic
CTAAATGCTGTAAAAGAGAC+TGG 0.501836 7_1:-81002027 None:intergenic
TAGTAGTACTAGTGCAGCTA+TGG 0.503693 7_1:+81004071 Msa1042760:CDS
GCTATGGTTGGTAATTCTAG+TGG 0.507355 7_1:+81004087 Msa1042760:CDS
GCTGTAAAAGAGACTGGCCT+TGG 0.509076 7_1:-81002021 None:intergenic
GGTGGAAGAGGATAGTGAAA+AGG 0.509534 7_1:-81002196 None:intergenic
TAAAAGAGACTGGCCTTGGC+GGG 0.509915 7_1:-81002017 None:intergenic
CATTCATCTCAAACATGCAG+TGG 0.512418 7_1:-81004318 None:intergenic
GTAAAAGAGACTGGCCTTGG+CGG 0.517343 7_1:-81002018 None:intergenic
AGAGCAATGACTTCAGCATC+CGG 0.519151 7_1:-81002413 None:intergenic
TGACCATATTAACCTCATCA+TGG 0.523171 7_1:-81004008 None:intergenic
TTAAAACAGCTAAATTTCAA+AGG 0.527522 7_1:-81002138 None:intergenic
CAACAATTTAGTCCACATGC+AGG 0.543450 7_1:+81003715 Msa1042760:CDS
GCTGCACTAGTACTACTACT+TGG 0.544040 7_1:-81004066 None:intergenic
TAAACTCGTTGTTTGTGTAG+AGG 0.545158 7_1:-81003977 None:intergenic
ATAATGTTTGTGATAGTAGT+GGG 0.561142 7_1:+81004293 Msa1042760:three_prime_UTR
AATGAGCTAATTGTTATAGC+TGG 0.565833 7_1:-81001933 None:intergenic
GGCCGCATCATGGTGGACAC+AGG 0.576015 7_1:-81002609 None:intergenic
AATCTTCAGCTTCATAGAAG+AGG 0.576550 7_1:+81002509 Msa1042760:CDS
AAGTGGCCATATAGTTTATG+GGG 0.586784 7_1:-81001961 None:intergenic
TATTCCGGTGAGGTCACCCA+AGG 0.589649 7_1:-81002636 None:intergenic
AGTACTAGTGCAGCTATGGT+TGG 0.590350 7_1:+81004075 Msa1042760:CDS
GGTGGACACAGGTCTTCTCC+GGG 0.591060 7_1:-81002598 None:intergenic
AGAAATCTACCAGGAACACC+AGG 0.591098 7_1:+81002285 Msa1042760:CDS
GAAACATGATCAAGTGAATG+TGG 0.592443 7_1:-81003805 None:intergenic
TGCTCATGAAATCCTGCATG+TGG 0.593771 7_1:-81003727 None:intergenic
ACTGTGGTACACTCTTCTCT+AGG 0.600160 7_1:+81002786 Msa1042760:CDS
TCACTATCCTCTTCCACCGG+AGG 0.603318 7_1:+81002201 Msa1042760:CDS
GAAGAGGTCACAACCTACCA+TGG 0.609397 7_1:+81002525 Msa1042760:CDS
TTTAAACCAAAACCATGATG+AGG 0.609478 7_1:+81003996 Msa1042760:CDS
ATTCATCTCAAACATGCAGT+GGG 0.610037 7_1:-81004317 None:intergenic
GTCTGCGAAATATGCAACAA+AGG 0.612364 7_1:+81002470 Msa1042760:CDS
AGAAGTGCAGTAGCTGACAT+TGG 0.615729 7_1:-81003871 None:intergenic
TACCATGGAAGCTAAAGCAA+AGG 0.618651 7_1:+81002540 Msa1042760:CDS
AATGTTTCTTTATTCCGGTG+AGG 0.626985 7_1:-81002646 None:intergenic
CATGGATTGATATCATCTCA+AGG 0.627308 7_1:+81003679 Msa1042760:CDS
AAGTTTGTCAAAACCTCCGG+TGG 0.633133 7_1:-81002214 None:intergenic
GACCTGTGTCCACCATGATG+CGG 0.639865 7_1:+81002607 Msa1042760:CDS
ACACAAACTAGTTTGTCACA+TGG 0.646370 7_1:+81003661 Msa1042760:CDS
AAAGCTCACACTAAAACTTG+TGG 0.646859 7_1:+81002743 Msa1042760:CDS
TAATCACTTATATCCCGCCA+AGG 0.654401 7_1:+81002004 Msa1042760:five_prime_UTR
AAAGGTCCAACAAAGAACCA+AGG 0.658252 7_1:+81002558 Msa1042760:CDS
AAGAAGAAGAGAAATCTACC+AGG 0.661464 7_1:+81002276 Msa1042760:CDS
AGGCCCTGGCCGCATCATGG+TGG 0.664444 7_1:-81002616 None:intergenic
AGAGAATATAAGTGTGACTG+TGG 0.678389 7_1:+81002770 Msa1042760:CDS
AAAGTACCAGGTGAAAACAA+AGG 0.694235 7_1:-81002108 None:intergenic
TGGAAGAGGATAGTGAAAAG+GGG 0.698551 7_1:-81002194 None:intergenic
AAAGACCAAACTTGTCACTG+TGG 0.746204 7_1:+81003749 Msa1042760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTAAATATTAAA+AGG - chr7_1:81002332-81002351 None:intergenic 0.0%
!!! TTATTAACAAATTTTTACAT+CGG + chr7_1:81002898-81002917 Msa1042760:intron 10.0%
!! ATAATAGCATTAAATTATAA+TGG + chr7_1:81003356-81003375 Msa1042760:intron 10.0%
!!! GAAATCAACAAAAATTATTT+TGG - chr7_1:81002060-81002079 None:intergenic 15.0%
!! AAAGTTTAATTAATATTACC+TGG - chr7_1:81002306-81002325 None:intergenic 15.0%
!!! TTTCAAATATGTTTTGAATT+TGG + chr7_1:81002373-81002392 Msa1042760:intron 15.0%
!!! TTTTCAATATCAAAAGATTT+TGG + chr7_1:81002841-81002860 Msa1042760:intron 15.0%
!!! TCAACAAAAATTATTTTGGA+GGG - chr7_1:81002056-81002075 None:intergenic 20.0%
!!! ATCAACAAAAATTATTTTGG+AGG - chr7_1:81002057-81002076 None:intergenic 20.0%
!! TTAAAACAGCTAAATTTCAA+AGG - chr7_1:81002141-81002160 None:intergenic 20.0%
!! TTGTGAATAATTAAATTCAG+AGG - chr7_1:81003173-81003192 None:intergenic 20.0%
!! CAAATTAAGAAAAGTTGTTA+AGG + chr7_1:81003190-81003209 Msa1042760:intron 20.0%
!! CAAGTTCAAATAAAAAGATA+TGG - chr7_1:81003283-81003302 None:intergenic 20.0%
!!! ATAAAAACTTGTTTCGTTAA+AGG + chr7_1:81003304-81003323 Msa1042760:intron 20.0%
!! AAAATAGTACTACAATTTGA+TGG - chr7_1:81003411-81003430 None:intergenic 20.0%
!!! CTATTTTTTTTGCCTATATA+TGG + chr7_1:81003424-81003443 Msa1042760:intron 20.0%
!! ATATAGTCAACACTTAATTA+AGG - chr7_1:81004245-81004264 None:intergenic 20.0%
!!! GTTGACTATATTGATATTTT+TGG + chr7_1:81004254-81004273 Msa1042760:three_prime_UTR 20.0%
! TGTTAAAAGACAAGAAAAAG+TGG - chr7_1:81001981-81002000 None:intergenic 25.0%
! GCTAAAATGTTTCTTTATTC+CGG - chr7_1:81002654-81002673 None:intergenic 25.0%
!!! AAACATTTTAGCAGAAAACA+TGG + chr7_1:81002662-81002681 Msa1042760:CDS 25.0%
!! ATGGTTAAAATTGGTTTAAC+TGG - chr7_1:81002971-81002990 None:intergenic 25.0%
! ATGAATTGCATGGTTAAAAT+TGG - chr7_1:81002980-81002999 None:intergenic 25.0%
!!! TAAATCTTTTGTTTTCGATG+TGG + chr7_1:81003033-81003052 Msa1042760:intron 25.0%
! ATAAAAAGATATGGTAGTCT+AGG - chr7_1:81003274-81003293 None:intergenic 25.0%
!! TTTTTGCCTATATATGGTTA+TGG + chr7_1:81003430-81003449 Msa1042760:intron 25.0%
! AATACTCCATAACCATATAT+AGG - chr7_1:81003439-81003458 None:intergenic 25.0%
! GTAAATGATTAGGTTTCTAA+TGG + chr7_1:81003503-81003522 Msa1042760:intron 25.0%
!!! GATTAATCTGTTGATTTTCT+TGG - chr7_1:81003780-81003799 None:intergenic 25.0%
! AGTTTAAATCAATTCAATGC+TGG + chr7_1:81004195-81004214 Msa1042760:CDS 25.0%
! GTTTAAATCAATTCAATGCT+GGG + chr7_1:81004196-81004215 Msa1042760:CDS 25.0%
! ATAATGTTTGTGATAGTAGT+GGG + chr7_1:81004293-81004312 Msa1042760:three_prime_UTR 25.0%
!! ATGTTTGAGATGAATGAAAA+AGG + chr7_1:81004325-81004344 Msa1042760:three_prime_UTR 25.0%
AATGAGCTAATTGTTATAGC+TGG - chr7_1:81001936-81001955 None:intergenic 30.0%
AAAGTGGCCATATAGTTTAT+GGG - chr7_1:81001965-81001984 None:intergenic 30.0%
AAAAGTGGCCATATAGTTTA+TGG - chr7_1:81001966-81001985 None:intergenic 30.0%
TGCTCACAAATGAATATTCT+TGG + chr7_1:81002168-81002187 Msa1042760:exon 30.0%
AGATTGAACTGCATATTTCT+TGG - chr7_1:81002717-81002736 None:intergenic 30.0%
AATATGCAGTTCAATCTGAT+TGG + chr7_1:81002720-81002739 Msa1042760:CDS 30.0%
TAGTTTCAAAGACAAAAGTC+AGG + chr7_1:81002869-81002888 Msa1042760:intron 30.0%
ATCAGTATGAATGAATTGCA+TGG - chr7_1:81002990-81003009 None:intergenic 30.0%
ACTGCATAGTGTAAATGATT+AGG + chr7_1:81003493-81003512 Msa1042760:intron 30.0%
! AATGGTACATTTTATTGCAC+AGG + chr7_1:81003521-81003540 Msa1042760:intron 30.0%
! TTCTGGAAATTTAGAGTTGT+AGG - chr7_1:81003616-81003635 None:intergenic 30.0%
! TTTTTCTGATGTTGTGCAAA+TGG + chr7_1:81003834-81003853 Msa1042760:CDS 30.0%
!! ACTAATCCTTCCATTTTTAG+TGG + chr7_1:81003931-81003950 Msa1042760:CDS 30.0%
AAACTTCCACTAAAAATGGA+AGG - chr7_1:81003940-81003959 None:intergenic 30.0%
!!! TCCATTTTTAGTGGAAGTTT+TGG + chr7_1:81003940-81003959 Msa1042760:CDS 30.0%
ACCAAAACTTCCACTAAAAA+TGG - chr7_1:81003944-81003963 None:intergenic 30.0%
TTTAAACCAAAACCATGATG+AGG + chr7_1:81003996-81004015 Msa1042760:CDS 30.0%
! TATTAACCTCATCATGGTTT+TGG - chr7_1:81004005-81004024 None:intergenic 30.0%
AAACCATGATGAGGTTAATA+TGG + chr7_1:81004005-81004024 Msa1042760:CDS 30.0%
GATAATGTTTGTGATAGTAG+TGG + chr7_1:81004292-81004311 Msa1042760:three_prime_UTR 30.0%
TCACAACCCCATAAACTATA+TGG + chr7_1:81001955-81001974 Msa1042760:five_prime_UTR 35.0%
AAGTGGCCATATAGTTTATG+GGG - chr7_1:81001964-81001983 None:intergenic 35.0%
CTAAATGCTGTAAAAGAGAC+TGG - chr7_1:81002030-81002049 None:intergenic 35.0%
! CAGTCTCTTTTACAGCATTT+AGG + chr7_1:81002028-81002047 Msa1042760:five_prime_UTR 35.0%
AGGTGAAAACAAAGGCTTAT+TGG - chr7_1:81002103-81002122 None:intergenic 35.0%
!!! AATAAGCCTTTGTTTTCACC+TGG + chr7_1:81002102-81002121 Msa1042760:five_prime_UTR 35.0%
! AAAGTACCAGGTGAAAACAA+AGG - chr7_1:81002111-81002130 None:intergenic 35.0%
!! AAAGGTTTTCACAAAGTACC+AGG - chr7_1:81002123-81002142 None:intergenic 35.0%
TTGAAGTTTGTCAAAACCTC+CGG - chr7_1:81002220-81002239 None:intergenic 35.0%
TAGATTTCTCTTCTTCTTGC+TGG - chr7_1:81002274-81002293 None:intergenic 35.0%
AAGAAGAAGAGAAATCTACC+AGG + chr7_1:81002276-81002295 Msa1042760:CDS 35.0%
TTAATATTACCTGGTGTTCC+TGG - chr7_1:81002297-81002316 None:intergenic 35.0%
GGATTGAAATACTACAGATC+CGG + chr7_1:81002394-81002413 Msa1042760:intron 35.0%
TCTTTCTCCAAAGACTCTAA+TGG + chr7_1:81002433-81002452 Msa1042760:CDS 35.0%
AATCTTCAGCTTCATAGAAG+AGG + chr7_1:81002509-81002528 Msa1042760:CDS 35.0%
!! CTTTTTCCTTGGTTCTTTGT+TGG - chr7_1:81002567-81002586 None:intergenic 35.0%
CAACAAAGAACCAAGGAAAA+AGG + chr7_1:81002565-81002584 Msa1042760:CDS 35.0%
! CAGATGTATACCTTTTTCCT+TGG - chr7_1:81002578-81002597 None:intergenic 35.0%
AATGTTTCTTTATTCCGGTG+AGG - chr7_1:81002649-81002668 None:intergenic 35.0%
GAAAACATGGTGAGAAGAAA+TGG + chr7_1:81002675-81002694 Msa1042760:CDS 35.0%
AAAGCTCACACTAAAACTTG+TGG + chr7_1:81002743-81002762 Msa1042760:CDS 35.0%
AGAGAATATAAGTGTGACTG+TGG + chr7_1:81002770-81002789 Msa1042760:CDS 35.0%
! GTACATTTTATTGCACAGGA+AGG + chr7_1:81003525-81003544 Msa1042760:intron 35.0%
TATTTGACGACTCTTCATTC+TGG - chr7_1:81003633-81003652 None:intergenic 35.0%
! ACACAAACTAGTTTGTCACA+TGG + chr7_1:81003661-81003680 Msa1042760:CDS 35.0%
! CATGGATTGATATCATCTCA+AGG + chr7_1:81003679-81003698 Msa1042760:CDS 35.0%
GAAACATGATCAAGTGAATG+TGG - chr7_1:81003808-81003827 None:intergenic 35.0%
TCACTTGATCATGTTTCATC+AGG + chr7_1:81003811-81003830 Msa1042760:CDS 35.0%
TAAACTCGTTGTTTGTGTAG+AGG - chr7_1:81003980-81003999 None:intergenic 35.0%
TGACCATATTAACCTCATCA+TGG - chr7_1:81004011-81004030 None:intergenic 35.0%
!! CTATGGTTGGTAATTCTAGT+GGG + chr7_1:81004088-81004107 Msa1042760:CDS 35.0%
!! AGTGGGTTTAGAGATTTTCT+TGG + chr7_1:81004105-81004124 Msa1042760:CDS 35.0%
ACTCATCATCGATGAACTTA+TGG - chr7_1:81004178-81004197 None:intergenic 35.0%
ATTCATCTCAAACATGCAGT+GGG - chr7_1:81004320-81004339 None:intergenic 35.0%
TAATCACTTATATCCCGCCA+AGG + chr7_1:81002004-81002023 Msa1042760:five_prime_UTR 40.0%
TGGAAGAGGATAGTGAAAAG+GGG - chr7_1:81002197-81002216 None:intergenic 40.0%
GTGGAAGAGGATAGTGAAAA+GGG - chr7_1:81002198-81002217 None:intergenic 40.0%
! TTTTCACTATCCTCTTCCAC+CGG + chr7_1:81002198-81002217 Msa1042760:CDS 40.0%
!! TTTGTGGTGGATTAGGGTTA+GGG - chr7_1:81002251-81002270 None:intergenic 40.0%
TGCATATTTCGCAGACGAAT+CGG - chr7_1:81002466-81002485 None:intergenic 40.0%
GTCTGCGAAATATGCAACAA+AGG + chr7_1:81002470-81002489 Msa1042760:CDS 40.0%
GCTGAAGATTCTGATCTCTT+TGG - chr7_1:81002499-81002518 None:intergenic 40.0%
! TTTGCTTTAGCTTCCATGGT+AGG - chr7_1:81002541-81002560 None:intergenic 40.0%
TACCATGGAAGCTAAAGCAA+AGG + chr7_1:81002540-81002559 Msa1042760:CDS 40.0%
AAAGGTCCAACAAAGAACCA+AGG + chr7_1:81002558-81002577 Msa1042760:CDS 40.0%
! GAAAAAGGTATACATCTGCC+CGG + chr7_1:81002580-81002599 Msa1042760:CDS 40.0%
CAACAATTTAGTCCACATGC+AGG + chr7_1:81003715-81003734 Msa1042760:CDS 40.0%
AAAGACCAAACTTGTCACTG+TGG + chr7_1:81003749-81003768 Msa1042760:CDS 40.0%
TTCAACCACAGTGACAAGTT+TGG - chr7_1:81003757-81003776 None:intergenic 40.0%
CTTCAGAAAGCAGCTCAAAT+TGG + chr7_1:81003892-81003911 Msa1042760:CDS 40.0%
TAGTAGTACTAGTGCAGCTA+TGG + chr7_1:81004071-81004090 Msa1042760:CDS 40.0%
!! GCTATGGTTGGTAATTCTAG+TGG + chr7_1:81004087-81004106 Msa1042760:CDS 40.0%
GCTCTTGAGGTAGAAATTGA+TGG - chr7_1:81004140-81004159 None:intergenic 40.0%
CATTCATCTCAAACATGCAG+TGG - chr7_1:81004321-81004340 None:intergenic 40.0%
GGTGGAAGAGGATAGTGAAA+AGG - chr7_1:81002199-81002218 None:intergenic 45.0%
AAGTTTGTCAAAACCTCCGG+TGG - chr7_1:81002217-81002236 None:intergenic 45.0%
!! GTTTGTGGTGGATTAGGGTT+AGG - chr7_1:81002252-81002271 None:intergenic 45.0%
!! TGCTGGTTTGTGGTGGATTA+GGG - chr7_1:81002257-81002276 None:intergenic 45.0%
!! TTGCTGGTTTGTGGTGGATT+AGG - chr7_1:81002258-81002277 None:intergenic 45.0%
!! TTCTTCTTGCTGGTTTGTGG+TGG - chr7_1:81002264-81002283 None:intergenic 45.0%
!! CTCTTCTTCTTGCTGGTTTG+TGG - chr7_1:81002267-81002286 None:intergenic 45.0%
AGAAATCTACCAGGAACACC+AGG + chr7_1:81002285-81002304 Msa1042760:CDS 45.0%
AGAGCAATGACTTCAGCATC+CGG - chr7_1:81002416-81002435 None:intergenic 45.0%
TTCGTCGCCATTAGAGTCTT+TGG - chr7_1:81002443-81002462 None:intergenic 45.0%
! GACCTTTGCTTTAGCTTCCA+TGG - chr7_1:81002545-81002564 None:intergenic 45.0%
ACTGTGGTACACTCTTCTCT+AGG + chr7_1:81002786-81002805 Msa1042760:CDS 45.0%
TGCTCATGAAATCCTGCATG+TGG - chr7_1:81003730-81003749 None:intergenic 45.0%
! AGAAGTGCAGTAGCTGACAT+TGG - chr7_1:81003874-81003893 None:intergenic 45.0%
GCTGCACTAGTACTACTACT+TGG - chr7_1:81004069-81004088 None:intergenic 45.0%
AGTACTAGTGCAGCTATGGT+TGG + chr7_1:81004075-81004094 Msa1042760:CDS 45.0%
! GCAAACTTTGCTAGCTCTTG+AGG - chr7_1:81004153-81004172 None:intergenic 45.0%
!! TAAAAGAGACTGGCCTTGGC+GGG - chr7_1:81002020-81002039 None:intergenic 50.0%
!! GTAAAAGAGACTGGCCTTGG+CGG - chr7_1:81002021-81002040 None:intergenic 50.0%
!! GCTGTAAAAGAGACTGGCCT+TGG - chr7_1:81002024-81002043 None:intergenic 50.0%
GAAGAGGTCACAACCTACCA+TGG + chr7_1:81002525-81002544 Msa1042760:CDS 50.0%
TCACTATCCTCTTCCACCGG+AGG + chr7_1:81002201-81002220 Msa1042760:CDS 55.0%
GTCAAAACCTCCGGTGGAAG+AGG - chr7_1:81002211-81002230 None:intergenic 55.0%
! TGGTGGACACAGGTCTTCTC+CGG - chr7_1:81002602-81002621 None:intergenic 55.0%
GACCTGTGTCCACCATGATG+CGG + chr7_1:81002607-81002626 Msa1042760:CDS 55.0%
TATTCCGGTGAGGTCACCCA+AGG - chr7_1:81002639-81002658 None:intergenic 55.0%
GGTGGACACAGGTCTTCTCC+GGG - chr7_1:81002601-81002620 None:intergenic 60.0%
TGTCCACCATGATGCGGCCA+GGG + chr7_1:81002613-81002632 Msa1042760:CDS 60.0%
!! GGCCGCATCATGGTGGACAC+AGG - chr7_1:81002612-81002631 None:intergenic 65.0%
GTGTCCACCATGATGCGGCC+AGG + chr7_1:81002612-81002631 Msa1042760:CDS 65.0%
CATGATGCGGCCAGGGCCTT+GGG + chr7_1:81002620-81002639 Msa1042760:CDS 65.0%
AGGGCCTTGGGTGACCTCAC+CGG + chr7_1:81002632-81002651 Msa1042760:CDS 65.0%
AGGCCCTGGCCGCATCATGG+TGG - chr7_1:81002619-81002638 None:intergenic 70.0%
CCAAGGCCCTGGCCGCATCA+TGG - chr7_1:81002622-81002641 None:intergenic 70.0%
CCATGATGCGGCCAGGGCCT+TGG + chr7_1:81002619-81002638 Msa1042760:CDS 70.0%
GGTGAGGTCACCCAAGGCCC+TGG - chr7_1:81002633-81002652 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 81001895 81004361 81001895 ID=Msa1042760;Name=Msa1042760
chr7_1 mRNA 81001895 81004361 81001895 ID=Msa1042760-mRNA-1;Parent=Msa1042760;Name=Msa1042760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=282|1|1|1|1|1|3|125|406
chr7_1 exon 81001895 81002306 81001895 ID=Msa1042760-mRNA-1:exon:22086;Parent=Msa1042760-mRNA-1
chr7_1 exon 81002411 81002807 81002411 ID=Msa1042760-mRNA-1:exon:22087;Parent=Msa1042760-mRNA-1
chr7_1 exon 81003543 81004361 81003543 ID=Msa1042760-mRNA-1:exon:22088;Parent=Msa1042760-mRNA-1
chr7_1 five_prime_UTR 81001895 81002176 81001895 ID=Msa1042760-mRNA-1:five_prime_utr;Parent=Msa1042760-mRNA-1
chr7_1 CDS 81002177 81002306 81002177 ID=Msa1042760-mRNA-1:cds;Parent=Msa1042760-mRNA-1
chr7_1 CDS 81002411 81002807 81002411 ID=Msa1042760-mRNA-1:cds;Parent=Msa1042760-mRNA-1
chr7_1 CDS 81003543 81004236 81003543 ID=Msa1042760-mRNA-1:cds;Parent=Msa1042760-mRNA-1
chr7_1 three_prime_UTR 81004237 81004361 81004237 ID=Msa1042760-mRNA-1:three_prime_utr;Parent=Msa1042760-mRNA-1
Gene Sequence

>Msa1042760

ATGAATATTCTTGGTGACCCCTTTTCACTATCCTCTTCCACCGGAGGTTTTGACAAACTTCAAAACACAAACCCTAACCCTAATCCACCACAAACCAGCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCGGATGCTGAAGTCATTGCTCTTTCTCCAAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGATTCCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGTCACAACCTACCATGGAAGCTAAAGCAAAGGTCCAACAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAAGACCTGTGTCCACCATGATGCGGCCAGGGCCTTGGGTGACCTCACCGGAATAAAGAAACATTTTAGCAGAAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACACTCTTCTCTAGGAAGGATAGCTTTATTACACATAGAGCTTTCTGTGACGCATTAGCTGTAGAAAGTGCAAGACACTCATCTCCTACAACTCTAAATTTCCAGAATGAAGAGTCGTCAAATATGATGAACACACAAACTAGTTTGTCACATGGATTGATATCATCTCAAGGACTTCAAAGTCTTCAACAATTTAGTCCACATGCAGGATTTCATGAGCAAAGACCAAACTTGTCACTGTGGTTGAACCAAGAAAATCAACAGATTAATCATCATCCACATTCACTTGATCATGTTTCATCAGGTTTTTCTGATGTTGTGCAAATGGCTCAAACTAACACTCCAATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATTGGTTCAACAAGAAGCACTACTAATCCTTCCATTTTTAGTGGAAGTTTTGGTGTAATGAGTTCATCCTCTACACAAACAACGAGTTTAAACCAAAACCATGATGAGGTTAATATGGTCATTAATCAGAAAATGAAGCAGCATGAGAATTTTGATCCAAGTAGTAGTACTAGTGCAGCTATGGTTGGTAATTCTAGTGGGTTTAGAGATTTTCTTGGAGTGAGTAACCATCAATTTCTACCTCAAGAGCTAGCAAAGTTTGCTTCCATAAGTTCATCGATGATGAGTTTAAATCAATTCAATGCTGGGTGCATCAATGAAAATTAA

Protein sequence

>Msa1042760

MNILGDPFSLSSSTGGFDKLQNTNPNPNPPQTSKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAVESARHSSPTTLNFQNEESSNMMNTQTSLSHGLISSQGLQSLQQFSPHAGFHEQRPNLSLWLNQENQQINHHPHSLDHVSSGFSDVVQMAQTNTPMSATALLQKAAQIGSTRSTTNPSIFSGSFGVMSSSSTQTTSLNQNHDEVNMVINQKMKQHENFDPSSSTSAAMVGNSSGFRDFLGVSNHQFLPQELAKFASISSSMMSLNQFNAGCINEN*