AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169110 MtrunA17_Chr7g0263941 95.577 407 16 2 1 406 1 406 0.0 791
Msa1169110 MtrunA17_Chr1g0181381 57.841 491 99 13 3 387 4 492 2.01e-165 473
Msa1169110 MtrunA17_Chr2g0330171 63.251 283 84 4 33 302 45 320 1.16e-118 353
Msa1169110 MtrunA17_Chr4g0029521 73.756 221 45 6 7 218 6 222 3.73e-115 345
Msa1169110 MtrunA17_Chr8g0342421 57.402 331 102 8 27 329 55 374 3.25e-114 343
Msa1169110 MtrunA17_Chr1g0199101 87.500 168 20 1 34 200 47 214 3.86e-112 338
Msa1169110 MtrunA17_Chr1g0191991 56.369 314 111 4 34 328 63 369 6.89e-112 338
Msa1169110 MtrunA17_Chr4g0040571 83.051 177 29 1 28 204 34 209 2.19e-111 335
Msa1169110 MtrunA17_Chr1g0163001 82.967 182 27 2 23 204 34 211 2.45e-111 336
Msa1169110 MtrunA17_Chr1g0185121 54.942 344 107 9 30 340 36 364 1.66e-110 331
Msa1169110 MtrunA17_Chr1g0162971 82.941 170 29 0 34 203 41 210 7.75e-110 330
Msa1169110 MtrunA17_Chr8g0373541 73.333 210 50 2 11 220 15 218 1.23e-109 332
Msa1169110 MtrunA17_Chr1g0151351 62.191 283 84 9 30 308 38 301 6.40e-109 327
Msa1169110 MtrunA17_Chr1g0210821 86.875 160 21 0 37 196 47 206 4.56e-108 329
Msa1169110 MtrunA17_Chr7g0268961 52.113 355 125 9 44 365 32 374 1.93e-105 320
Msa1169110 MtrunA17_Chr2g0326381 62.403 258 74 8 34 283 32 274 5.57e-105 316
Msa1169110 MtrunA17_Chr3g0141431 46.212 396 156 12 21 373 6 387 1.72e-99 302
Msa1169110 MtrunA17_Chr2g0324991 87.023 131 17 0 45 175 3 133 3.32e-85 256
Msa1169110 MtrunA17_Chr6g0479921 64.557 158 55 1 32 188 27 184 2.34e-74 239
Msa1169110 MtrunA17_Chr8g0375521 64.103 156 54 2 34 187 27 182 3.35e-72 232
Msa1169110 MtrunA17_Chr3g0123941 37.821 156 89 3 39 186 113 268 4.36e-26 107
Msa1169110 MtrunA17_Chr1g0200421 35.762 151 85 4 48 186 236 386 1.10e-24 105
Msa1169110 MtrunA17_Chr2g0320341 34.839 155 87 4 43 183 224 378 1.45e-23 101
Msa1169110 MtrunA17_Chr8g0382121 35.948 153 87 5 42 183 104 256 3.85e-22 95.9
Msa1169110 MtrunA17_Chr5g0422571 34.254 181 102 6 21 191 78 251 8.61e-22 94.7
Msa1169110 MtrunA17_Chr1g0198651 34.503 171 95 5 28 186 84 249 5.69e-21 92.4
Msa1169110 MtrunA17_Chr4g0053341 35.762 151 87 5 45 186 69 218 2.20e-20 89.4
Msa1169110 MtrunA17_Chr4g0026521 36.301 146 83 5 50 186 118 262 2.53e-19 87.8
Msa1169110 MtrunA17_Chr2g0321291 34.054 185 103 8 50 223 133 309 3.14e-19 87.8
Msa1169110 MtrunA17_Chr8g0352011 36.301 146 83 5 50 186 166 310 3.16e-19 88.2
Msa1169110 MtrunA17_Chr7g0258011 34.932 146 85 5 50 186 176 320 5.80e-19 87.4
Msa1169110 MtrunA17_Chr1g0173841 34.932 146 85 5 50 186 215 359 1.93e-18 86.3
Msa1169110 MtrunA17_Chr2g0328921 34.932 146 85 5 50 186 138 282 2.80e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169110 AT5G03150.1 61.489 309 71 9 3 283 4 292 1.27e-117 352
Msa1169110 AT5G03150.1 42.143 140 41 9 285 388 367 502 7.48e-11 64.3
Msa1169110 AT3G50700.1 85.549 173 25 0 24 196 24 196 1.90e-113 339
Msa1169110 AT5G66730.1 75.728 206 43 2 11 209 8 213 1.46e-111 336
Msa1169110 AT1G55110.3 62.799 293 84 8 30 306 58 341 1.75e-111 335
Msa1169110 AT1G55110.1 62.799 293 84 8 30 306 58 341 1.75e-111 335
Msa1169110 AT1G55110.2 62.799 293 84 8 30 306 58 341 1.75e-111 335
Msa1169110 AT5G44160.1 52.676 355 109 8 28 329 32 380 4.81e-111 334
Msa1169110 AT3G45260.2 84.181 177 23 2 33 204 38 214 1.44e-108 327
Msa1169110 AT3G45260.1 84.181 177 23 2 33 204 38 214 1.44e-108 327
Msa1169110 AT1G03840.1 78.610 187 38 2 28 213 36 221 1.57e-108 328
Msa1169110 AT3G13810.6 86.826 167 21 1 31 196 48 214 3.97e-106 322
Msa1169110 AT3G13810.4 86.826 167 21 1 31 196 67 233 4.13e-106 323
Msa1169110 AT3G13810.1 86.826 167 21 1 31 196 67 233 4.13e-106 323
Msa1169110 AT3G13810.5 86.826 167 21 1 31 196 62 228 4.15e-106 323
Msa1169110 AT1G14580.1 82.738 168 26 1 29 196 51 215 5.41e-106 321
Msa1169110 AT1G14580.2 82.738 168 26 1 29 196 51 215 5.41e-106 321
Msa1169110 AT2G02070.2 83.529 170 26 1 34 203 52 219 6.44e-106 325
Msa1169110 AT2G02070.1 83.529 170 26 1 34 203 52 219 6.44e-106 325
Msa1169110 AT1G14580.3 82.738 168 26 1 29 196 65 229 6.85e-106 321
Msa1169110 AT1G03840.2 77.540 187 38 3 28 213 36 219 7.19e-105 319
Msa1169110 AT2G02080.1 70.647 201 46 3 7 197 20 217 9.75e-105 319
Msa1169110 AT2G02080.4 70.647 201 46 3 7 197 20 217 9.75e-105 319
Msa1169110 AT2G02080.5 70.647 201 46 3 7 197 20 217 9.75e-105 319
Msa1169110 AT2G02080.3 70.647 201 46 3 7 197 20 217 9.75e-105 319
Msa1169110 AT4G02670.1 81.714 175 31 1 34 207 53 227 1.09e-104 315
Msa1169110 AT4G02670.2 81.714 175 31 1 34 207 55 229 1.31e-104 315
Msa1169110 AT5G60470.2 75.521 192 38 3 21 203 24 215 4.26e-104 316
Msa1169110 AT5G60470.3 75.521 192 38 3 21 203 20 211 7.31e-104 315
Msa1169110 AT5G44160.2 51.622 339 106 7 44 329 8 341 5.42e-103 312
Msa1169110 AT3G13810.3 88.235 153 17 1 45 196 68 220 8.50e-98 301
Msa1169110 AT3G13810.2 88.235 153 17 1 45 196 82 234 9.74e-98 301
Msa1169110 AT5G60470.1 80.745 161 29 2 45 203 46 206 1.04e-94 291
Msa1169110 AT2G02080.6 81.295 139 26 0 58 196 1 139 2.51e-88 275
Msa1169110 AT2G02080.2 81.295 139 26 0 58 196 1 139 2.51e-88 275
Msa1169110 AT1G68130.1 56.842 190 74 3 32 219 39 222 1.19e-74 239
Msa1169110 AT1G25250.3 64.780 159 53 2 32 187 31 189 6.14e-74 236
Msa1169110 AT2G01940.1 63.190 163 58 2 32 192 42 204 1.34e-73 237
Msa1169110 AT2G01940.3 62.195 164 59 3 32 192 42 205 5.67e-70 227
Msa1169110 AT1G25250.1 65.306 147 48 2 44 187 20 166 4.32e-69 223
Msa1169110 AT1G68130.2 52.817 142 59 3 80 219 1 136 1.13e-45 160
Msa1169110 AT2G01940.2 60.870 115 43 2 80 192 1 115 3.02e-44 157
Msa1169110 AT1G25250.2 62.162 111 39 2 80 187 1 111 3.14e-44 156
Msa1169110 AT1G34370.3 29.918 244 124 8 43 244 14 252 1.51e-24 102
Msa1169110 AT1G34370.2 29.918 244 124 8 43 244 224 462 4.22e-24 104
Msa1169110 AT1G34370.1 29.918 244 124 8 43 244 224 462 4.22e-24 104
Msa1169110 AT5G22890.1 32.530 166 96 4 35 186 191 354 1.36e-22 98.6
Msa1169110 AT1G13290.1 34.211 152 88 5 55 195 93 243 2.21e-19 88.6
Msa1169110 AT1G08290.1 35.849 159 85 7 44 186 155 312 1.49e-18 86.7
Msa1169110 AT1G34790.1 33.333 180 104 7 47 218 129 300 1.59e-18 85.9
Msa1169110 AT3G20880.1 34.247 146 86 5 50 186 243 387 3.41e-18 86.3
Msa1169110 AT1G51220.1 33.562 146 87 5 50 186 165 309 5.37e-18 85.1
Msa1169110 AT3G57670.1 34.247 146 86 5 50 186 204 348 7.42e-18 85.1

Find 100 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGTGGCCATATAGTTTA+TGG 0.179946 7_4:+62051839 None:intergenic
TTGCTGGTTTGTGGTGGATT+AGG 0.210609 7_4:+62051547 None:intergenic
CCATGATGCGGCCAGGGCCT+TGG 0.232187 7_4:-62051183 Msa1169110:CDS
AGATTGAACTGCATATTTCT+TGG 0.249648 7_4:+62051088 None:intergenic
TGCTCACAAATGAATATTCT+TGG 0.256662 7_4:-62051634 Msa1169110:exon
GCTAAAATGTTTCTTTATTC+CGG 0.260327 7_4:+62051151 None:intergenic
TAGATTTCTCTTCTTCTTGC+TGG 0.261742 7_4:+62051531 None:intergenic
CTTCAGAAAGCAGCTCAAAT+TGG 0.266190 7_4:-62049925 Msa1169110:CDS
ACTCATCATCGATGAACTTA+TGG 0.281450 7_4:+62049642 None:intergenic
TGCTGGTTTGTGGTGGATTA+GGG 0.287287 7_4:+62051548 None:intergenic
TATTAACCTCATCATGGTTT+TGG 0.287752 7_4:+62049815 None:intergenic
TTCGTCGCCATTAGAGTCTT+TGG 0.293737 7_4:+62051362 None:intergenic
GCTGAAGATTCTGATCTCTT+TGG 0.295858 7_4:+62051306 None:intergenic
GTTTGTGGTGGATTAGGGTT+AGG 0.305769 7_4:+62051553 None:intergenic
CAACAAAGAACCAAGGAAAA+AGG 0.327722 7_4:-62051237 Msa1169110:CDS
CTCTTCTTCTTGCTGGTTTG+TGG 0.328936 7_4:+62051538 None:intergenic
TATTTGACGACTCTTCATTC+TGG 0.329154 7_4:+62050187 None:intergenic
TTAATATTACCTGGTGTTCC+TGG 0.358554 7_4:+62051508 None:intergenic
GAAAACATGGTGAGAAGAAA+TGG 0.363622 7_4:-62051127 Msa1169110:CDS
AAACCATGATGAGGTTAATA+TGG 0.368833 7_4:-62049812 Msa1169110:CDS
GCACAACCCCATAAACTATA+TGG 0.369807 7_4:-62051847 Msa1169110:five_prime_UTR
CATGATGCGGCCAGGGCCTT+GGG 0.370145 7_4:-62051182 Msa1169110:CDS
AGGTGAAAACAAAGGCTTAT+TGG 0.372642 7_4:+62051702 None:intergenic
ATATAGTCAACACTTAATTA+AGG 0.380532 7_4:+62049575 None:intergenic
TTCTGGAAATTTAGAGTTGT+AGG 0.385136 7_4:+62050204 None:intergenic
AAAGTGGCCATATAGTTTAT+GGG 0.400863 7_4:+62051840 None:intergenic
GCTCTTGAGGTAGAAATTGA+TGG 0.404206 7_4:+62049680 None:intergenic
GTGTCCACCATGATGCGGCC+AGG 0.413040 7_4:-62051190 Msa1169110:CDS
TCTTTCTCCAAAGACTCTAA+TGG 0.414643 7_4:-62051369 Msa1169110:CDS
TGCATATTTCGCAGACGAAT+CGG 0.417602 7_4:+62051339 None:intergenic
TTTGTGGTGGATTAGGGTTA+GGG 0.429876 7_4:+62051554 None:intergenic
AATATGCAGTTCAATCTGAT+TGG 0.433651 7_4:-62051082 Msa1169110:CDS
TGGTGGACACAGGTCTTCTC+CGG 0.437364 7_4:+62051203 None:intergenic
TTCAACCACAGTGACAAGTT+TGG 0.441620 7_4:+62050063 None:intergenic
ATGTTCGAGATGAATGAAAA+AGG 0.441726 7_4:-62049492 Msa1169110:three_prime_UTR
GACCTTTGCTTTAGCTTCCA+TGG 0.442243 7_4:+62051260 None:intergenic
AGTTTAAATCAATTCAATGC+TGG 0.449709 7_4:-62049622 Msa1169110:CDS
TCACTTGATCATGTTTCATC+GGG 0.450338 7_4:-62050006 Msa1169110:CDS
TTGAAGTTTGTCAAAACCTC+CGG 0.458884 7_4:+62051585 None:intergenic
TTCACTTGATCATGTTTCAT+CGG 0.469156 7_4:-62050007 Msa1169110:CDS
GGTGAGGTCACCCAAGGCCC+TGG 0.470064 7_4:+62051172 None:intergenic
GATAATGTTTGTGATAGTAG+TGG 0.474671 7_4:-62049525 Msa1169110:three_prime_UTR
GTGGAAGAGGATAGTGAAAA+GGG 0.477404 7_4:+62051607 None:intergenic
TTCTTCTTGCTGGTTTGTGG+TGG 0.478291 7_4:+62051541 None:intergenic
AGAGCAATGACTTCGGCATC+CGG 0.484253 7_4:+62051389 None:intergenic
CTATGGTTGGTAATTCTAGT+GGG 0.487415 7_4:-62049729 Msa1169110:CDS
GTTTAAATCAATTCAATGCT+GGG 0.488084 7_4:-62049621 Msa1169110:CDS
TTTGCTTTAGCTTCCATGGT+AGG 0.488944 7_4:+62051264 None:intergenic
GTCAAAACCTCCGGTGGAAG+AGG 0.490780 7_4:+62051594 None:intergenic
AGGGCCTTGGGTGACCTCAC+CGG 0.495108 7_4:-62051170 Msa1169110:CDS
CCAAGGCCCTGGCCGCATCA+TGG 0.496782 7_4:+62051183 None:intergenic
TGTCCACCATGATGCGGCCA+GGG 0.498285 7_4:-62051189 Msa1169110:CDS
GCAAACTTTGCTAGCTCTTG+AGG 0.498977 7_4:+62049667 None:intergenic
CTAAATGCTGTAAAAGAGAC+TGG 0.501836 7_4:+62051775 None:intergenic
TAGTAGTACTAGTGCAGCTA+TGG 0.503693 7_4:-62049746 Msa1169110:CDS
GCTATGGTTGGTAATTCTAG+TGG 0.507355 7_4:-62049730 Msa1169110:CDS
GCTGTAAAAGAGACTGGCCT+TGG 0.509076 7_4:+62051781 None:intergenic
GGTGGAAGAGGATAGTGAAA+AGG 0.509534 7_4:+62051606 None:intergenic
TAAAAGAGACTGGCCTTGGC+GGG 0.509915 7_4:+62051785 None:intergenic
GTAAAAGAGACTGGCCTTGG+CGG 0.517343 7_4:+62051784 None:intergenic
TGACCATATTAACCTCATCA+TGG 0.523171 7_4:+62049809 None:intergenic
TTAAAACAGCTAAATTTCAA+AGG 0.527522 7_4:+62051664 None:intergenic
CATTCATCTCGAACATGCAG+TGG 0.541313 7_4:+62049499 None:intergenic
CAACAATTTAGTCCACATGC+AGG 0.543450 7_4:-62050102 Msa1169110:CDS
GCTGCACTAGTACTACTACT+TGG 0.544040 7_4:+62049751 None:intergenic
TAAACTCGTTGTTTGTGTAG+AGG 0.545158 7_4:+62049840 None:intergenic
ATAATGTTTGTGATAGTAGT+GGG 0.561142 7_4:-62049524 Msa1169110:three_prime_UTR
CATGAGCTAATTGTTATAGC+TGG 0.573740 7_4:+62051869 None:intergenic
GGCCGCATCATGGTGGACAC+AGG 0.576015 7_4:+62051193 None:intergenic
AATCTTCAGCTTCATAGAAG+AGG 0.576550 7_4:-62051293 Msa1169110:CDS
AAGTGGCCATATAGTTTATG+GGG 0.586784 7_4:+62051841 None:intergenic
TGGAGAAAGAGCAATGACTT+CGG 0.587031 7_4:+62051382 None:intergenic
TATTCCGGTGAGGTCACCCA+AGG 0.589649 7_4:+62051166 None:intergenic
AGTACTAGTGCAGCTATGGT+TGG 0.590350 7_4:-62049742 Msa1169110:CDS
GGTGGACACAGGTCTTCTCC+GGG 0.591060 7_4:+62051204 None:intergenic
AGAAATCTACCAGGAACACC+AGG 0.591098 7_4:-62051517 Msa1169110:intron
TGCTCATGAAATCCTGCATG+TGG 0.593771 7_4:+62050090 None:intergenic
GAAACATGATCAAGTGAATG+TGG 0.599435 7_4:+62050012 None:intergenic
ACTGTGGTACACTCTTCTCT+AGG 0.600160 7_4:-62051016 Msa1169110:intron
TCACTATCCTCTTCCACCGG+AGG 0.603318 7_4:-62051601 Msa1169110:CDS
GAAGAGGTCACAACCTACCA+TGG 0.609397 7_4:-62051277 Msa1169110:CDS
TTTAAACCAAAACCATGATG+AGG 0.609478 7_4:-62049821 Msa1169110:CDS
GTCTGCGAAATATGCAACAA+AGG 0.612364 7_4:-62051332 Msa1169110:CDS
AGAAGTGCAGTAGCTGACAT+TGG 0.615729 7_4:+62049946 None:intergenic
TACCATGGAAGCTAAAGCAA+AGG 0.618651 7_4:-62051262 Msa1169110:CDS
ATTCATCTCGAACATGCAGT+GGG 0.625039 7_4:+62049500 None:intergenic
AATGTTTCTTTATTCCGGTG+AGG 0.626985 7_4:+62051156 None:intergenic
CATGGATTGATATCATCTCA+AGG 0.627308 7_4:-62050138 Msa1169110:CDS
AAGTTTGTCAAAACCTCCGG+TGG 0.633133 7_4:+62051588 None:intergenic
GACCTGTGTCCACCATGATG+CGG 0.639865 7_4:-62051195 Msa1169110:CDS
ACACAAACTAGTTTGTCACA+TGG 0.646370 7_4:-62050156 Msa1169110:CDS
AAAGCTCACACTAAAACTTG+TGG 0.646859 7_4:-62051059 Msa1169110:CDS
TAATCACTTATATCCCGCCA+AGG 0.654401 7_4:-62051798 Msa1169110:five_prime_UTR
AAAGGTCCAACAAAGAACCA+AGG 0.658252 7_4:-62051244 Msa1169110:CDS
AAGAAGAAGAGAAATCTACC+AGG 0.661464 7_4:-62051526 Msa1169110:CDS
AGGCCCTGGCCGCATCATGG+TGG 0.664444 7_4:+62051186 None:intergenic
AGAGAATATAAGTGTGACTG+TGG 0.678389 7_4:-62051032 Msa1169110:CDS
AAAGTACCAGGTGAAAACAA+AGG 0.694235 7_4:+62051694 None:intergenic
TGGAAGAGGATAGTGAAAAG+GGG 0.698551 7_4:+62051608 None:intergenic
AAAGACCAAACTTGTCACTG+TGG 0.746204 7_4:-62050068 Msa1169110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTAAATATTAAA+AGG + chr7_4:62049915-62049934 None:intergenic 0.0%
!! TTTATTTATTAAATATTAAA+AGG + chr7_4:62049915-62049934 None:intergenic 0.0%
!!! TTATTAACAAATTTTTACAT+CGG - chr7_4:62050481-62050500 Msa1169110:intron 10.0%
!! ATAATAGCATTAAATTATAA+TGG - chr7_4:62050924-62050943 Msa1169110:intron 10.0%
!!! TTATTAACAAATTTTTACAT+CGG - chr7_4:62050481-62050500 Msa1169110:intron 10.0%
!! ATAATAGCATTAAATTATAA+TGG - chr7_4:62050924-62050943 Msa1169110:intron 10.0%
!!! GAAATCAACAAAAATTATTT+TGG + chr7_4:62049643-62049662 None:intergenic 15.0%
!! AAAGTTTAATTAATATTACC+TGG + chr7_4:62049889-62049908 None:intergenic 15.0%
!!! TTTCAAATATGTTTTGAATT+TGG - chr7_4:62049956-62049975 Msa1169110:CDS 15.0%
!!! TTTTCAATATCAAAAGATTT+TGG - chr7_4:62050424-62050443 Msa1169110:intron 15.0%
!!! GAAATCAACAAAAATTATTT+TGG + chr7_4:62049643-62049662 None:intergenic 15.0%
!! AAAGTTTAATTAATATTACC+TGG + chr7_4:62049889-62049908 None:intergenic 15.0%
!!! TTTCAAATATGTTTTGAATT+TGG - chr7_4:62049956-62049975 Msa1169110:CDS 15.0%
!!! TTTTCAATATCAAAAGATTT+TGG - chr7_4:62050424-62050443 Msa1169110:intron 15.0%
!!! TCAACAAAAATTATTTTGGA+GGG + chr7_4:62049639-62049658 None:intergenic 20.0%
!!! ATCAACAAAAATTATTTTGG+AGG + chr7_4:62049640-62049659 None:intergenic 20.0%
!! TTAAAACAGCTAAATTTCAA+AGG + chr7_4:62049724-62049743 None:intergenic 20.0%
!! TTGTGAATAATTAAATTCAG+AGG + chr7_4:62050758-62050777 None:intergenic 20.0%
!! CAAATTAAGAAAAGTTGTTA+AGG - chr7_4:62050775-62050794 Msa1169110:intron 20.0%
!! CAAGTTCAAATAAAAAGATA+TGG + chr7_4:62050863-62050882 None:intergenic 20.0%
!!! ATAAAAACTTGTTTCGTTAA+AGG - chr7_4:62050884-62050903 Msa1169110:intron 20.0%
!! AAAATAGTACTACAATTTGA+TGG + chr7_4:62050979-62050998 None:intergenic 20.0%
!!! CTATTTTTTTTGCCTATATA+TGG - chr7_4:62050992-62051011 Msa1169110:intron 20.0%
!! ATATAGTCAACACTTAATTA+AGG + chr7_4:62051813-62051832 None:intergenic 20.0%
!!! GTTGACTATATTGATATTTT+TGG - chr7_4:62051822-62051841 Msa1169110:five_prime_UTR 20.0%
!!! TCAACAAAAATTATTTTGGA+GGG + chr7_4:62049639-62049658 None:intergenic 20.0%
!!! ATCAACAAAAATTATTTTGG+AGG + chr7_4:62049640-62049659 None:intergenic 20.0%
!! TTAAAACAGCTAAATTTCAA+AGG + chr7_4:62049724-62049743 None:intergenic 20.0%
!! TTGTGAATAATTAAATTCAG+AGG + chr7_4:62050758-62050777 None:intergenic 20.0%
!! CAAATTAAGAAAAGTTGTTA+AGG - chr7_4:62050775-62050794 Msa1169110:intron 20.0%
!! CAAGTTCAAATAAAAAGATA+TGG + chr7_4:62050863-62050882 None:intergenic 20.0%
!!! ATAAAAACTTGTTTCGTTAA+AGG - chr7_4:62050884-62050903 Msa1169110:intron 20.0%
!! AAAATAGTACTACAATTTGA+TGG + chr7_4:62050979-62050998 None:intergenic 20.0%
!!! CTATTTTTTTTGCCTATATA+TGG - chr7_4:62050992-62051011 Msa1169110:intron 20.0%
!! ATATAGTCAACACTTAATTA+AGG + chr7_4:62051813-62051832 None:intergenic 20.0%
!!! GTTGACTATATTGATATTTT+TGG - chr7_4:62051822-62051841 Msa1169110:five_prime_UTR 20.0%
! TGTTAAAAGACAAGAAAAAG+TGG + chr7_4:62049564-62049583 None:intergenic 25.0%
! GCTAAAATGTTTCTTTATTC+CGG + chr7_4:62050237-62050256 None:intergenic 25.0%
!!! AAACATTTTAGCAGAAAACA+TGG - chr7_4:62050245-62050264 Msa1169110:CDS 25.0%
!! ATGGTTAAAATTGGTTTAAC+TGG + chr7_4:62050554-62050573 None:intergenic 25.0%
! ATGAATTGCATGGTTAAAAT+TGG + chr7_4:62050563-62050582 None:intergenic 25.0%
!!! TAAATCTTTTGTTTTCGATG+TGG - chr7_4:62050616-62050635 Msa1169110:intron 25.0%
! ATAAAAAGATATGGTAGTCT+AGG + chr7_4:62050854-62050873 None:intergenic 25.0%
!! TTTTTGCCTATATATGGTTA+TGG - chr7_4:62050998-62051017 Msa1169110:intron 25.0%
! AATACTCCATAACCATATAT+AGG + chr7_4:62051007-62051026 None:intergenic 25.0%
! GTAAATGATTAGGTTTCTAA+TGG - chr7_4:62051071-62051090 Msa1169110:CDS 25.0%
!!! GATTAATCTGTTGATTTTCT+TGG + chr7_4:62051348-62051367 None:intergenic 25.0%
! AGTTTAAATCAATTCAATGC+TGG - chr7_4:62051763-62051782 Msa1169110:five_prime_UTR 25.0%
! GTTTAAATCAATTCAATGCT+GGG - chr7_4:62051764-62051783 Msa1169110:five_prime_UTR 25.0%
! ATAATGTTTGTGATAGTAGT+GGG - chr7_4:62051861-62051880 Msa1169110:five_prime_UTR 25.0%
! TGTTAAAAGACAAGAAAAAG+TGG + chr7_4:62049564-62049583 None:intergenic 25.0%
! GCTAAAATGTTTCTTTATTC+CGG + chr7_4:62050237-62050256 None:intergenic 25.0%
!!! AAACATTTTAGCAGAAAACA+TGG - chr7_4:62050245-62050264 Msa1169110:CDS 25.0%
!! ATGGTTAAAATTGGTTTAAC+TGG + chr7_4:62050554-62050573 None:intergenic 25.0%
! ATGAATTGCATGGTTAAAAT+TGG + chr7_4:62050563-62050582 None:intergenic 25.0%
!!! TAAATCTTTTGTTTTCGATG+TGG - chr7_4:62050616-62050635 Msa1169110:intron 25.0%
! ATAAAAAGATATGGTAGTCT+AGG + chr7_4:62050854-62050873 None:intergenic 25.0%
!! TTTTTGCCTATATATGGTTA+TGG - chr7_4:62050998-62051017 Msa1169110:intron 25.0%
! AATACTCCATAACCATATAT+AGG + chr7_4:62051007-62051026 None:intergenic 25.0%
! GTAAATGATTAGGTTTCTAA+TGG - chr7_4:62051071-62051090 Msa1169110:CDS 25.0%
!!! GATTAATCTGTTGATTTTCT+TGG + chr7_4:62051348-62051367 None:intergenic 25.0%
! AGTTTAAATCAATTCAATGC+TGG - chr7_4:62051763-62051782 Msa1169110:five_prime_UTR 25.0%
! GTTTAAATCAATTCAATGCT+GGG - chr7_4:62051764-62051783 Msa1169110:five_prime_UTR 25.0%
! ATAATGTTTGTGATAGTAGT+GGG - chr7_4:62051861-62051880 Msa1169110:five_prime_UTR 25.0%
AAAGTGGCCATATAGTTTAT+GGG + chr7_4:62049548-62049567 None:intergenic 30.0%
AAAAGTGGCCATATAGTTTA+TGG + chr7_4:62049549-62049568 None:intergenic 30.0%
TGCTCACAAATGAATATTCT+TGG - chr7_4:62049751-62049770 Msa1169110:CDS 30.0%
AGATTGAACTGCATATTTCT+TGG + chr7_4:62050300-62050319 None:intergenic 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr7_4:62050303-62050322 Msa1169110:intron 30.0%
TAGTTTCAAAGACAAAAGTC+AGG - chr7_4:62050452-62050471 Msa1169110:intron 30.0%
ATCAGTATGAATGAATTGCA+TGG + chr7_4:62050573-62050592 None:intergenic 30.0%
TAGAATAAACAAGCACTACT+CGG + chr7_4:62051036-62051055 None:intergenic 30.0%
ACTGCATAGTGTAAATGATT+AGG - chr7_4:62051061-62051080 Msa1169110:CDS 30.0%
! TTCTGGAAATTTAGAGTTGT+AGG + chr7_4:62051184-62051203 None:intergenic 30.0%
TTCACTTGATCATGTTTCAT+CGG - chr7_4:62051378-62051397 Msa1169110:CDS 30.0%
! TTTTTCTGATGTTGTGCAAA+TGG - chr7_4:62051402-62051421 Msa1169110:intron 30.0%
!! ACTAATCCTTCCATTTTTAG+TGG - chr7_4:62051499-62051518 Msa1169110:intron 30.0%
AAACTTCCACTAAAAATGGA+AGG + chr7_4:62051508-62051527 None:intergenic 30.0%
!!! TCCATTTTTAGTGGAAGTTT+TGG - chr7_4:62051508-62051527 Msa1169110:intron 30.0%
ACCAAAACTTCCACTAAAAA+TGG + chr7_4:62051512-62051531 None:intergenic 30.0%
TTTAAACCAAAACCATGATG+AGG - chr7_4:62051564-62051583 Msa1169110:CDS 30.0%
! TATTAACCTCATCATGGTTT+TGG + chr7_4:62051573-62051592 None:intergenic 30.0%
AAACCATGATGAGGTTAATA+TGG - chr7_4:62051573-62051592 Msa1169110:CDS 30.0%
GATAATGTTTGTGATAGTAG+TGG - chr7_4:62051860-62051879 Msa1169110:five_prime_UTR 30.0%
ATGTTCGAGATGAATGAAAA+AGG - chr7_4:62051893-62051912 Msa1169110:five_prime_UTR 30.0%
AAAGTGGCCATATAGTTTAT+GGG + chr7_4:62049548-62049567 None:intergenic 30.0%
AAAAGTGGCCATATAGTTTA+TGG + chr7_4:62049549-62049568 None:intergenic 30.0%
TGCTCACAAATGAATATTCT+TGG - chr7_4:62049751-62049770 Msa1169110:CDS 30.0%
AGATTGAACTGCATATTTCT+TGG + chr7_4:62050300-62050319 None:intergenic 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr7_4:62050303-62050322 Msa1169110:intron 30.0%
TAGTTTCAAAGACAAAAGTC+AGG - chr7_4:62050452-62050471 Msa1169110:intron 30.0%
ATCAGTATGAATGAATTGCA+TGG + chr7_4:62050573-62050592 None:intergenic 30.0%
TAGAATAAACAAGCACTACT+CGG + chr7_4:62051036-62051055 None:intergenic 30.0%
ACTGCATAGTGTAAATGATT+AGG - chr7_4:62051061-62051080 Msa1169110:CDS 30.0%
! TTCTGGAAATTTAGAGTTGT+AGG + chr7_4:62051184-62051203 None:intergenic 30.0%
TTCACTTGATCATGTTTCAT+CGG - chr7_4:62051378-62051397 Msa1169110:CDS 30.0%
! TTTTTCTGATGTTGTGCAAA+TGG - chr7_4:62051402-62051421 Msa1169110:intron 30.0%
!! ACTAATCCTTCCATTTTTAG+TGG - chr7_4:62051499-62051518 Msa1169110:intron 30.0%
AAACTTCCACTAAAAATGGA+AGG + chr7_4:62051508-62051527 None:intergenic 30.0%
!!! TCCATTTTTAGTGGAAGTTT+TGG - chr7_4:62051508-62051527 Msa1169110:intron 30.0%
ACCAAAACTTCCACTAAAAA+TGG + chr7_4:62051512-62051531 None:intergenic 30.0%
TTTAAACCAAAACCATGATG+AGG - chr7_4:62051564-62051583 Msa1169110:CDS 30.0%
! TATTAACCTCATCATGGTTT+TGG + chr7_4:62051573-62051592 None:intergenic 30.0%
AAACCATGATGAGGTTAATA+TGG - chr7_4:62051573-62051592 Msa1169110:CDS 30.0%
GATAATGTTTGTGATAGTAG+TGG - chr7_4:62051860-62051879 Msa1169110:five_prime_UTR 30.0%
ATGTTCGAGATGAATGAAAA+AGG - chr7_4:62051893-62051912 Msa1169110:five_prime_UTR 30.0%
CATGAGCTAATTGTTATAGC+TGG + chr7_4:62049519-62049538 None:intergenic 35.0%
AAGTGGCCATATAGTTTATG+GGG + chr7_4:62049547-62049566 None:intergenic 35.0%
CTAAATGCTGTAAAAGAGAC+TGG + chr7_4:62049613-62049632 None:intergenic 35.0%
! CAGTCTCTTTTACAGCATTT+AGG - chr7_4:62049611-62049630 Msa1169110:CDS 35.0%
AGGTGAAAACAAAGGCTTAT+TGG + chr7_4:62049686-62049705 None:intergenic 35.0%
!!! AATAAGCCTTTGTTTTCACC+TGG - chr7_4:62049685-62049704 Msa1169110:CDS 35.0%
! AAAGTACCAGGTGAAAACAA+AGG + chr7_4:62049694-62049713 None:intergenic 35.0%
!! AAAGGTTTTCACAAAGTACC+AGG + chr7_4:62049706-62049725 None:intergenic 35.0%
TTGAAGTTTGTCAAAACCTC+CGG + chr7_4:62049803-62049822 None:intergenic 35.0%
TAGATTTCTCTTCTTCTTGC+TGG + chr7_4:62049857-62049876 None:intergenic 35.0%
AAGAAGAAGAGAAATCTACC+AGG - chr7_4:62049859-62049878 Msa1169110:CDS 35.0%
TTAATATTACCTGGTGTTCC+TGG + chr7_4:62049880-62049899 None:intergenic 35.0%
GGATTGAAATACTACAGATC+CGG - chr7_4:62049977-62049996 Msa1169110:CDS 35.0%
TCTTTCTCCAAAGACTCTAA+TGG - chr7_4:62050016-62050035 Msa1169110:CDS 35.0%
AATCTTCAGCTTCATAGAAG+AGG - chr7_4:62050092-62050111 Msa1169110:CDS 35.0%
!! CTTTTTCCTTGGTTCTTTGT+TGG + chr7_4:62050150-62050169 None:intergenic 35.0%
CAACAAAGAACCAAGGAAAA+AGG - chr7_4:62050148-62050167 Msa1169110:CDS 35.0%
! CAGATGTATACCTTTTTCCT+TGG + chr7_4:62050161-62050180 None:intergenic 35.0%
AATGTTTCTTTATTCCGGTG+AGG + chr7_4:62050232-62050251 None:intergenic 35.0%
GAAAACATGGTGAGAAGAAA+TGG - chr7_4:62050258-62050277 Msa1169110:CDS 35.0%
AAAGCTCACACTAAAACTTG+TGG - chr7_4:62050326-62050345 Msa1169110:intron 35.0%
AGAGAATATAAGTGTGACTG+TGG - chr7_4:62050353-62050372 Msa1169110:intron 35.0%
! AATGGTACATTTTACTGCAC+AGG - chr7_4:62051089-62051108 Msa1169110:CDS 35.0%
TATTTGACGACTCTTCATTC+TGG + chr7_4:62051201-62051220 None:intergenic 35.0%
! ACACAAACTAGTTTGTCACA+TGG - chr7_4:62051229-62051248 Msa1169110:CDS 35.0%
! CATGGATTGATATCATCTCA+AGG - chr7_4:62051247-62051266 Msa1169110:CDS 35.0%
GAAACATGATCAAGTGAATG+TGG + chr7_4:62051376-62051395 None:intergenic 35.0%
TCACTTGATCATGTTTCATC+GGG - chr7_4:62051379-62051398 Msa1169110:CDS 35.0%
TAAACTCGTTGTTTGTGTAG+AGG + chr7_4:62051548-62051567 None:intergenic 35.0%
TGACCATATTAACCTCATCA+TGG + chr7_4:62051579-62051598 None:intergenic 35.0%
!! CTATGGTTGGTAATTCTAGT+GGG - chr7_4:62051656-62051675 Msa1169110:five_prime_UTR 35.0%
!! AGTGGGTTTAGAGATTTTCT+TGG - chr7_4:62051673-62051692 Msa1169110:five_prime_UTR 35.0%
ACTCATCATCGATGAACTTA+TGG + chr7_4:62051746-62051765 None:intergenic 35.0%
!! GAAAAAGGTGCTGAATTTCT+CGG - chr7_4:62051908-62051927 Msa1169110:five_prime_UTR 35.0%
CATGAGCTAATTGTTATAGC+TGG + chr7_4:62049519-62049538 None:intergenic 35.0%
AAGTGGCCATATAGTTTATG+GGG + chr7_4:62049547-62049566 None:intergenic 35.0%
CTAAATGCTGTAAAAGAGAC+TGG + chr7_4:62049613-62049632 None:intergenic 35.0%
! CAGTCTCTTTTACAGCATTT+AGG - chr7_4:62049611-62049630 Msa1169110:CDS 35.0%
AGGTGAAAACAAAGGCTTAT+TGG + chr7_4:62049686-62049705 None:intergenic 35.0%
!!! AATAAGCCTTTGTTTTCACC+TGG - chr7_4:62049685-62049704 Msa1169110:CDS 35.0%
! AAAGTACCAGGTGAAAACAA+AGG + chr7_4:62049694-62049713 None:intergenic 35.0%
!! AAAGGTTTTCACAAAGTACC+AGG + chr7_4:62049706-62049725 None:intergenic 35.0%
TTGAAGTTTGTCAAAACCTC+CGG + chr7_4:62049803-62049822 None:intergenic 35.0%
TAGATTTCTCTTCTTCTTGC+TGG + chr7_4:62049857-62049876 None:intergenic 35.0%
AAGAAGAAGAGAAATCTACC+AGG - chr7_4:62049859-62049878 Msa1169110:CDS 35.0%
TTAATATTACCTGGTGTTCC+TGG + chr7_4:62049880-62049899 None:intergenic 35.0%
GGATTGAAATACTACAGATC+CGG - chr7_4:62049977-62049996 Msa1169110:CDS 35.0%
TCTTTCTCCAAAGACTCTAA+TGG - chr7_4:62050016-62050035 Msa1169110:CDS 35.0%
AATCTTCAGCTTCATAGAAG+AGG - chr7_4:62050092-62050111 Msa1169110:CDS 35.0%
!! CTTTTTCCTTGGTTCTTTGT+TGG + chr7_4:62050150-62050169 None:intergenic 35.0%
CAACAAAGAACCAAGGAAAA+AGG - chr7_4:62050148-62050167 Msa1169110:CDS 35.0%
! CAGATGTATACCTTTTTCCT+TGG + chr7_4:62050161-62050180 None:intergenic 35.0%
AATGTTTCTTTATTCCGGTG+AGG + chr7_4:62050232-62050251 None:intergenic 35.0%
GAAAACATGGTGAGAAGAAA+TGG - chr7_4:62050258-62050277 Msa1169110:CDS 35.0%
AAAGCTCACACTAAAACTTG+TGG - chr7_4:62050326-62050345 Msa1169110:intron 35.0%
AGAGAATATAAGTGTGACTG+TGG - chr7_4:62050353-62050372 Msa1169110:intron 35.0%
! AATGGTACATTTTACTGCAC+AGG - chr7_4:62051089-62051108 Msa1169110:CDS 35.0%
TATTTGACGACTCTTCATTC+TGG + chr7_4:62051201-62051220 None:intergenic 35.0%
! ACACAAACTAGTTTGTCACA+TGG - chr7_4:62051229-62051248 Msa1169110:CDS 35.0%
! CATGGATTGATATCATCTCA+AGG - chr7_4:62051247-62051266 Msa1169110:CDS 35.0%
GAAACATGATCAAGTGAATG+TGG + chr7_4:62051376-62051395 None:intergenic 35.0%
TCACTTGATCATGTTTCATC+GGG - chr7_4:62051379-62051398 Msa1169110:CDS 35.0%
TAAACTCGTTGTTTGTGTAG+AGG + chr7_4:62051548-62051567 None:intergenic 35.0%
TGACCATATTAACCTCATCA+TGG + chr7_4:62051579-62051598 None:intergenic 35.0%
!! CTATGGTTGGTAATTCTAGT+GGG - chr7_4:62051656-62051675 Msa1169110:five_prime_UTR 35.0%
!! AGTGGGTTTAGAGATTTTCT+TGG - chr7_4:62051673-62051692 Msa1169110:five_prime_UTR 35.0%
ACTCATCATCGATGAACTTA+TGG + chr7_4:62051746-62051765 None:intergenic 35.0%
GCACAACCCCATAAACTATA+TGG - chr7_4:62049538-62049557 Msa1169110:three_prime_UTR 40.0%
TAATCACTTATATCCCGCCA+AGG - chr7_4:62049587-62049606 Msa1169110:exon 40.0%
TGGAAGAGGATAGTGAAAAG+GGG + chr7_4:62049780-62049799 None:intergenic 40.0%
GTGGAAGAGGATAGTGAAAA+GGG + chr7_4:62049781-62049800 None:intergenic 40.0%
! TTTTCACTATCCTCTTCCAC+CGG - chr7_4:62049781-62049800 Msa1169110:CDS 40.0%
!! TTTGTGGTGGATTAGGGTTA+GGG + chr7_4:62049834-62049853 None:intergenic 40.0%
TGGAGAAAGAGCAATGACTT+CGG + chr7_4:62050006-62050025 None:intergenic 40.0%
TGCATATTTCGCAGACGAAT+CGG + chr7_4:62050049-62050068 None:intergenic 40.0%
GTCTGCGAAATATGCAACAA+AGG - chr7_4:62050053-62050072 Msa1169110:CDS 40.0%
GCTGAAGATTCTGATCTCTT+TGG + chr7_4:62050082-62050101 None:intergenic 40.0%
! TTTGCTTTAGCTTCCATGGT+AGG + chr7_4:62050124-62050143 None:intergenic 40.0%
TACCATGGAAGCTAAAGCAA+AGG - chr7_4:62050123-62050142 Msa1169110:CDS 40.0%
AAAGGTCCAACAAAGAACCA+AGG - chr7_4:62050141-62050160 Msa1169110:CDS 40.0%
! GAAAAAGGTATACATCTGCC+CGG - chr7_4:62050163-62050182 Msa1169110:CDS 40.0%
! GTACATTTTACTGCACAGGA+AGG - chr7_4:62051093-62051112 Msa1169110:CDS 40.0%
CAACAATTTAGTCCACATGC+AGG - chr7_4:62051283-62051302 Msa1169110:CDS 40.0%
AAAGACCAAACTTGTCACTG+TGG - chr7_4:62051317-62051336 Msa1169110:CDS 40.0%
TTCAACCACAGTGACAAGTT+TGG + chr7_4:62051325-62051344 None:intergenic 40.0%
CTTCAGAAAGCAGCTCAAAT+TGG - chr7_4:62051460-62051479 Msa1169110:intron 40.0%
TAGTAGTACTAGTGCAGCTA+TGG - chr7_4:62051639-62051658 Msa1169110:exon 40.0%
!! GCTATGGTTGGTAATTCTAG+TGG - chr7_4:62051655-62051674 Msa1169110:five_prime_UTR 40.0%
GCTCTTGAGGTAGAAATTGA+TGG + chr7_4:62051708-62051727 None:intergenic 40.0%
ATTCATCTCGAACATGCAGT+GGG + chr7_4:62051888-62051907 None:intergenic 40.0%
GCACAACCCCATAAACTATA+TGG - chr7_4:62049538-62049557 Msa1169110:three_prime_UTR 40.0%
TAATCACTTATATCCCGCCA+AGG - chr7_4:62049587-62049606 Msa1169110:exon 40.0%
TGGAAGAGGATAGTGAAAAG+GGG + chr7_4:62049780-62049799 None:intergenic 40.0%
GTGGAAGAGGATAGTGAAAA+GGG + chr7_4:62049781-62049800 None:intergenic 40.0%
! TTTTCACTATCCTCTTCCAC+CGG - chr7_4:62049781-62049800 Msa1169110:CDS 40.0%
!! TTTGTGGTGGATTAGGGTTA+GGG + chr7_4:62049834-62049853 None:intergenic 40.0%
TGGAGAAAGAGCAATGACTT+CGG + chr7_4:62050006-62050025 None:intergenic 40.0%
TGCATATTTCGCAGACGAAT+CGG + chr7_4:62050049-62050068 None:intergenic 40.0%
GTCTGCGAAATATGCAACAA+AGG - chr7_4:62050053-62050072 Msa1169110:CDS 40.0%
GCTGAAGATTCTGATCTCTT+TGG + chr7_4:62050082-62050101 None:intergenic 40.0%
! TTTGCTTTAGCTTCCATGGT+AGG + chr7_4:62050124-62050143 None:intergenic 40.0%
TACCATGGAAGCTAAAGCAA+AGG - chr7_4:62050123-62050142 Msa1169110:CDS 40.0%
AAAGGTCCAACAAAGAACCA+AGG - chr7_4:62050141-62050160 Msa1169110:CDS 40.0%
! GAAAAAGGTATACATCTGCC+CGG - chr7_4:62050163-62050182 Msa1169110:CDS 40.0%
! GTACATTTTACTGCACAGGA+AGG - chr7_4:62051093-62051112 Msa1169110:CDS 40.0%
CAACAATTTAGTCCACATGC+AGG - chr7_4:62051283-62051302 Msa1169110:CDS 40.0%
AAAGACCAAACTTGTCACTG+TGG - chr7_4:62051317-62051336 Msa1169110:CDS 40.0%
TTCAACCACAGTGACAAGTT+TGG + chr7_4:62051325-62051344 None:intergenic 40.0%
CTTCAGAAAGCAGCTCAAAT+TGG - chr7_4:62051460-62051479 Msa1169110:intron 40.0%
TAGTAGTACTAGTGCAGCTA+TGG - chr7_4:62051639-62051658 Msa1169110:exon 40.0%
!! GCTATGGTTGGTAATTCTAG+TGG - chr7_4:62051655-62051674 Msa1169110:five_prime_UTR 40.0%
GCTCTTGAGGTAGAAATTGA+TGG + chr7_4:62051708-62051727 None:intergenic 40.0%
ATTCATCTCGAACATGCAGT+GGG + chr7_4:62051888-62051907 None:intergenic 40.0%
GGTGGAAGAGGATAGTGAAA+AGG + chr7_4:62049782-62049801 None:intergenic 45.0%
AAGTTTGTCAAAACCTCCGG+TGG + chr7_4:62049800-62049819 None:intergenic 45.0%
!! GTTTGTGGTGGATTAGGGTT+AGG + chr7_4:62049835-62049854 None:intergenic 45.0%
!! TGCTGGTTTGTGGTGGATTA+GGG + chr7_4:62049840-62049859 None:intergenic 45.0%
!! TTGCTGGTTTGTGGTGGATT+AGG + chr7_4:62049841-62049860 None:intergenic 45.0%
!! TTCTTCTTGCTGGTTTGTGG+TGG + chr7_4:62049847-62049866 None:intergenic 45.0%
!! CTCTTCTTCTTGCTGGTTTG+TGG + chr7_4:62049850-62049869 None:intergenic 45.0%
AGAAATCTACCAGGAACACC+AGG - chr7_4:62049868-62049887 Msa1169110:CDS 45.0%
TTCGTCGCCATTAGAGTCTT+TGG + chr7_4:62050026-62050045 None:intergenic 45.0%
! GACCTTTGCTTTAGCTTCCA+TGG + chr7_4:62050128-62050147 None:intergenic 45.0%
ACTGTGGTACACTCTTCTCT+AGG - chr7_4:62050369-62050388 Msa1169110:intron 45.0%
TGCTCATGAAATCCTGCATG+TGG + chr7_4:62051298-62051317 None:intergenic 45.0%
! AGAAGTGCAGTAGCTGACAT+TGG + chr7_4:62051442-62051461 None:intergenic 45.0%
GCTGCACTAGTACTACTACT+TGG + chr7_4:62051637-62051656 None:intergenic 45.0%
AGTACTAGTGCAGCTATGGT+TGG - chr7_4:62051643-62051662 Msa1169110:exon 45.0%
! GCAAACTTTGCTAGCTCTTG+AGG + chr7_4:62051721-62051740 None:intergenic 45.0%
CATTCATCTCGAACATGCAG+TGG + chr7_4:62051889-62051908 None:intergenic 45.0%
GGTGGAAGAGGATAGTGAAA+AGG + chr7_4:62049782-62049801 None:intergenic 45.0%
AAGTTTGTCAAAACCTCCGG+TGG + chr7_4:62049800-62049819 None:intergenic 45.0%
!! GTTTGTGGTGGATTAGGGTT+AGG + chr7_4:62049835-62049854 None:intergenic 45.0%
!! TGCTGGTTTGTGGTGGATTA+GGG + chr7_4:62049840-62049859 None:intergenic 45.0%
!! TTGCTGGTTTGTGGTGGATT+AGG + chr7_4:62049841-62049860 None:intergenic 45.0%
!! TTCTTCTTGCTGGTTTGTGG+TGG + chr7_4:62049847-62049866 None:intergenic 45.0%
!! CTCTTCTTCTTGCTGGTTTG+TGG + chr7_4:62049850-62049869 None:intergenic 45.0%
AGAAATCTACCAGGAACACC+AGG - chr7_4:62049868-62049887 Msa1169110:CDS 45.0%
TTCGTCGCCATTAGAGTCTT+TGG + chr7_4:62050026-62050045 None:intergenic 45.0%
! GACCTTTGCTTTAGCTTCCA+TGG + chr7_4:62050128-62050147 None:intergenic 45.0%
ACTGTGGTACACTCTTCTCT+AGG - chr7_4:62050369-62050388 Msa1169110:intron 45.0%
TGCTCATGAAATCCTGCATG+TGG + chr7_4:62051298-62051317 None:intergenic 45.0%
! AGAAGTGCAGTAGCTGACAT+TGG + chr7_4:62051442-62051461 None:intergenic 45.0%
GCTGCACTAGTACTACTACT+TGG + chr7_4:62051637-62051656 None:intergenic 45.0%
AGTACTAGTGCAGCTATGGT+TGG - chr7_4:62051643-62051662 Msa1169110:exon 45.0%
! GCAAACTTTGCTAGCTCTTG+AGG + chr7_4:62051721-62051740 None:intergenic 45.0%
CATTCATCTCGAACATGCAG+TGG + chr7_4:62051889-62051908 None:intergenic 45.0%
!! TAAAAGAGACTGGCCTTGGC+GGG + chr7_4:62049603-62049622 None:intergenic 50.0%
!! GTAAAAGAGACTGGCCTTGG+CGG + chr7_4:62049604-62049623 None:intergenic 50.0%
!! GCTGTAAAAGAGACTGGCCT+TGG + chr7_4:62049607-62049626 None:intergenic 50.0%
AGAGCAATGACTTCGGCATC+CGG + chr7_4:62049999-62050018 None:intergenic 50.0%
GAAGAGGTCACAACCTACCA+TGG - chr7_4:62050108-62050127 Msa1169110:CDS 50.0%
!! TAAAAGAGACTGGCCTTGGC+GGG + chr7_4:62049603-62049622 None:intergenic 50.0%
!! GTAAAAGAGACTGGCCTTGG+CGG + chr7_4:62049604-62049623 None:intergenic 50.0%
!! GCTGTAAAAGAGACTGGCCT+TGG + chr7_4:62049607-62049626 None:intergenic 50.0%
AGAGCAATGACTTCGGCATC+CGG + chr7_4:62049999-62050018 None:intergenic 50.0%
GAAGAGGTCACAACCTACCA+TGG - chr7_4:62050108-62050127 Msa1169110:CDS 50.0%
TCACTATCCTCTTCCACCGG+AGG - chr7_4:62049784-62049803 Msa1169110:CDS 55.0%
GTCAAAACCTCCGGTGGAAG+AGG + chr7_4:62049794-62049813 None:intergenic 55.0%
! TGGTGGACACAGGTCTTCTC+CGG + chr7_4:62050185-62050204 None:intergenic 55.0%
GACCTGTGTCCACCATGATG+CGG - chr7_4:62050190-62050209 Msa1169110:CDS 55.0%
TATTCCGGTGAGGTCACCCA+AGG + chr7_4:62050222-62050241 None:intergenic 55.0%
TCACTATCCTCTTCCACCGG+AGG - chr7_4:62049784-62049803 Msa1169110:CDS 55.0%
GTCAAAACCTCCGGTGGAAG+AGG + chr7_4:62049794-62049813 None:intergenic 55.0%
! TGGTGGACACAGGTCTTCTC+CGG + chr7_4:62050185-62050204 None:intergenic 55.0%
GACCTGTGTCCACCATGATG+CGG - chr7_4:62050190-62050209 Msa1169110:CDS 55.0%
TATTCCGGTGAGGTCACCCA+AGG + chr7_4:62050222-62050241 None:intergenic 55.0%
GGTGGACACAGGTCTTCTCC+GGG + chr7_4:62050184-62050203 None:intergenic 60.0%
TGTCCACCATGATGCGGCCA+GGG - chr7_4:62050196-62050215 Msa1169110:CDS 60.0%
GGTGGACACAGGTCTTCTCC+GGG + chr7_4:62050184-62050203 None:intergenic 60.0%
TGTCCACCATGATGCGGCCA+GGG - chr7_4:62050196-62050215 Msa1169110:CDS 60.0%
!! GGCCGCATCATGGTGGACAC+AGG + chr7_4:62050195-62050214 None:intergenic 65.0%
GTGTCCACCATGATGCGGCC+AGG - chr7_4:62050195-62050214 Msa1169110:CDS 65.0%
CATGATGCGGCCAGGGCCTT+GGG - chr7_4:62050203-62050222 Msa1169110:CDS 65.0%
AGGGCCTTGGGTGACCTCAC+CGG - chr7_4:62050215-62050234 Msa1169110:CDS 65.0%
!! GGCCGCATCATGGTGGACAC+AGG + chr7_4:62050195-62050214 None:intergenic 65.0%
GTGTCCACCATGATGCGGCC+AGG - chr7_4:62050195-62050214 Msa1169110:CDS 65.0%
CATGATGCGGCCAGGGCCTT+GGG - chr7_4:62050203-62050222 Msa1169110:CDS 65.0%
AGGGCCTTGGGTGACCTCAC+CGG - chr7_4:62050215-62050234 Msa1169110:CDS 65.0%
AGGCCCTGGCCGCATCATGG+TGG + chr7_4:62050202-62050221 None:intergenic 70.0%
CCAAGGCCCTGGCCGCATCA+TGG + chr7_4:62050205-62050224 None:intergenic 70.0%
CCATGATGCGGCCAGGGCCT+TGG - chr7_4:62050202-62050221 Msa1169110:CDS 70.0%
GGTGAGGTCACCCAAGGCCC+TGG + chr7_4:62050216-62050235 None:intergenic 70.0%
AGGCCCTGGCCGCATCATGG+TGG + chr7_4:62050202-62050221 None:intergenic 70.0%
CCAAGGCCCTGGCCGCATCA+TGG + chr7_4:62050205-62050224 None:intergenic 70.0%
CCATGATGCGGCCAGGGCCT+TGG - chr7_4:62050202-62050221 Msa1169110:CDS 70.0%
GGTGAGGTCACCCAAGGCCC+TGG + chr7_4:62050216-62050235 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 62049478 62051929 62049478 ID=Msa1169110;Name=Msa1169110
chr7_4 mRNA 62049478 62051929 62049478 ID=Msa1169110-mRNA-1;Parent=Msa1169110;Name=Msa1169110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=282|1|1|1|1|1|3|125|406
chr7_4 exon 62049478 62050296 62049478 ID=Msa1169110-mRNA-1:exon:19601;Parent=Msa1169110-mRNA-1
chr7_4 exon 62051017 62051413 62051017 ID=Msa1169110-mRNA-1:exon:19600;Parent=Msa1169110-mRNA-1
chr7_4 exon 62051518 62051929 62051518 ID=Msa1169110-mRNA-1:exon:19599;Parent=Msa1169110-mRNA-1
chr7_4 five_prime_UTR 62051648 62051929 62051648 ID=Msa1169110-mRNA-1:five_prime_utr;Parent=Msa1169110-mRNA-1
chr7_4 CDS 62051518 62051647 62051518 ID=Msa1169110-mRNA-1:cds;Parent=Msa1169110-mRNA-1
chr7_4 CDS 62051017 62051413 62051017 ID=Msa1169110-mRNA-1:cds;Parent=Msa1169110-mRNA-1
chr7_4 CDS 62049603 62050296 62049603 ID=Msa1169110-mRNA-1:cds;Parent=Msa1169110-mRNA-1
chr7_4 three_prime_UTR 62049478 62049602 62049478 ID=Msa1169110-mRNA-1:three_prime_utr;Parent=Msa1169110-mRNA-1
Gene Sequence

>Msa1169110

ATGAATATTCTTGGTGACCCCTTTTCACTATCCTCTTCCACCGGAGGTTTTGACAAACTTCAAAACACAAACCCTAACCCTAATCCACCACAAACCAGCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCGGATGCCGAAGTCATTGCTCTTTCTCCAAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGATTCCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGTCACAACCTACCATGGAAGCTAAAGCAAAGGTCCAACAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAAGACCTGTGTCCACCATGATGCGGCCAGGGCCTTGGGTGACCTCACCGGAATAAAGAAACATTTTAGCAGAAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACACTCTTCTCTAGGAAGGATAGCTTTATTACACATAGAGCTTTCTGTGACGCATTAGCTGTAGAAAGTGCAAGACACTCATCTCCTACAACTCTAAATTTCCAGAATGAAGAGTCGTCAAATATGATGAACACACAAACTAGTTTGTCACATGGATTGATATCATCTCAAGGACTTCAAAGTCTTCAACAATTTAGTCCACATGCAGGATTTCATGAGCAAAGACCAAACTTGTCACTGTGGTTGAACCAAGAAAATCAACAGATTAATCATCATCCACATTCACTTGATCATGTTTCATCGGGTTTTTCTGATGTTGTGCAAATGGCTCAAACTAATACTCCAATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATTGGTTCAACAAGAAGCACTACTAATCCTTCCATTTTTAGTGGAAGTTTTGGTGTAATGAGTTCATCCTCTACACAAACAACGAGTTTAAACCAAAACCATGATGAGGTTAATATGGTCATTAATCAGAAAATGAAGCAGCATGAGAATTTTGATCCAAGTAGTAGTACTAGTGCAGCTATGGTTGGTAATTCTAGTGGGTTTAGAGATTTTCTTGGAGTGAGTAACCATCAATTTCTACCTCAAGAGCTAGCAAAGTTTGCTTCCATAAGTTCATCGATGATGAGTTTAAATCAATTCAATGCTGGGTGCATCAATGAAAATTAA
Protein sequence

>Msa1169110

MNILGDPFSLSSSTGGFDKLQNTNPNPNPPQTSKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAVESARHSSPTTLNFQNEESSNMMNTQTSLSHGLISSQGLQSLQQFSPHAGFHEQRPNLSLWLNQENQQINHHPHSLDHVSSGFSDVVQMAQTNTPMSATALLQKAAQIGSTRSTTNPSIFSGSFGVMSSSSTQTTSLNQNHDEVNMVINQKMKQHENFDPSSSTSAAMVGNSSGFRDFLGVSNHQFLPQELAKFASISSSMMSLNQFNAGCINEN*