AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1044110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1044110 MtrunA17_Chr2g0297681 94.962 397 20 0 1 397 312 708 0.0 777
Msa1044110 MtrunA17_Chr2g0297691 94.458 397 22 0 1 397 314 710 0.0 775
Msa1044110 MtrunA17_Chr2g0297651 90.176 397 38 1 1 397 314 709 0.0 739
Msa1044110 MtrunA17_Chr2g0297491 82.116 397 70 1 1 397 1 396 0.0 678
Msa1044110 MtrunA17_Chr2g0297481 83.627 397 60 2 1 397 99 490 0.0 677
Msa1044110 MtrunA17_Chr2g0297701 52.163 393 179 4 1 392 199 583 9.97e-136 400
Msa1044110 MtrunA17_Chr2g0297711 51.585 347 162 5 49 392 197 540 1.84e-117 352
Msa1044110 MtrunA17_Chr2g0297621 82.114 123 21 1 50 172 1 122 4.12e-67 208
Msa1044110 MtrunA17_Chr5g0410201 38.671 331 195 5 50 378 1 325 5.01e-64 207
Msa1044110 MtrunA17_Chr5g0410271 39.249 293 175 3 88 378 33 324 3.54e-61 200
Msa1044110 MtrunA17_Chr5g0410171 39.527 296 170 5 88 378 440 731 1.32e-59 206
Msa1044110 MtrunA17_Chr2g0297531 81.132 106 19 1 1 106 99 203 2.28e-56 184
Msa1044110 MtrunA17_Chr5g0443001 39.527 296 175 3 85 379 310 602 3.72e-55 191
Msa1044110 MtrunA17_Chr6g0456141 35.258 329 205 5 50 377 59 380 4.02e-54 184
Msa1044110 MtrunA17_Chr5g0410341 36.177 293 184 3 88 378 452 743 7.01e-53 187
Msa1044110 MtrunA17_Chr5g0410461 38.127 299 179 3 86 379 166 463 5.70e-50 175
Msa1044110 MtrunA17_Chr5g0410371 37.838 296 173 5 91 379 4 295 9.14e-50 170
Msa1044110 MtrunA17_Chr6g0457101 35.061 328 207 4 51 377 362 684 4.78e-49 176
Msa1044110 MtrunA17_Chr6g0456101 35.152 330 203 6 51 377 416 737 3.66e-47 171
Msa1044110 MtrunA17_Chr2g0297521 84.706 85 13 0 182 266 1 85 4.41e-47 155
Msa1044110 MtrunA17_Chr3g0100301 40.865 208 121 2 170 375 200 407 2.20e-45 161
Msa1044110 MtrunA17_Chr2g0286601 33.968 315 191 7 78 379 378 688 2.91e-44 163
Msa1044110 MtrunA17_Chr2g0297611 80.000 85 17 0 196 280 1 85 4.94e-44 148
Msa1044110 MtrunA17_Chr5g0410581 32.765 293 192 2 91 378 502 794 3.49e-43 160
Msa1044110 MtrunA17_Chr2g0286551 35.000 300 185 5 88 379 370 667 5.39e-41 153
Msa1044110 MtrunA17_Chr3g0098481 31.930 285 183 6 110 387 58 338 2.09e-40 146
Msa1044110 MtrunA17_Chr5g0439061 34.828 290 182 3 91 375 440 727 4.61e-40 151
Msa1044110 MtrunA17_Chr3g0100741 32.281 285 189 3 85 368 305 586 4.20e-38 144
Msa1044110 MtrunA17_Chr3g0098531 32.014 278 169 8 110 375 11 280 1.01e-36 135
Msa1044110 MtrunA17_Chr2g0284501 34.201 269 164 4 107 371 388 647 1.77e-36 140
Msa1044110 MtrunA17_Chr5g0410191 40.110 182 107 2 198 378 10 190 4.30e-36 130
Msa1044110 MtrunA17_Chr3g0102001 32.550 298 189 7 88 377 441 734 7.97e-33 130
Msa1044110 MtrunA17_Chr2g0284541 34.043 282 177 4 91 371 356 629 1.71e-31 126
Msa1044110 MtrunA17_Chr3g0098301 29.044 272 184 4 110 374 124 393 9.41e-31 121
Msa1044110 MtrunA17_Chr3g0096941 29.242 277 192 3 85 360 306 579 2.12e-30 122
Msa1044110 MtrunA17_Chr5g0439081 33.880 183 119 2 190 371 15 196 9.16e-29 112
Msa1044110 MtrunA17_Chr5g0439051 38.220 191 113 3 190 377 19 207 2.07e-27 108
Msa1044110 MtrunA17_Chr5g0410541 33.846 195 121 3 190 378 23 215 1.27e-26 106
Msa1044110 MtrunA17_Chr2g0286561 31.188 202 126 5 189 379 14 213 1.30e-24 100
Msa1044110 MtrunA17_Chr5g0410451 36.301 146 92 1 188 332 39 184 1.11e-23 98.6
Msa1044110 MtrunA17_Chr1g0211541 29.032 217 152 2 83 299 214 428 1.51e-22 99.4
Msa1044110 MtrunA17_Chr5g0410181 40.909 132 76 2 248 378 1 131 5.08e-22 90.9
Msa1044110 MtrunA17_Chr5g0410511 31.795 195 124 4 190 377 2 194 3.15e-21 90.9
Msa1044110 MtrunA17_Chr1g0211531 28.028 289 173 9 83 363 235 496 6.45e-20 91.7
Msa1044110 MtrunA17_Chr1g0211511 28.108 185 124 4 83 264 12 190 1.92e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1044110 AT5G35810.1 40.615 325 187 1 76 394 23 347 4.82e-80 250
Msa1044110 AT3G18670.1 33.247 385 241 5 8 389 223 594 6.20e-61 207
Msa1044110 AT3G18670.2 31.494 435 237 7 8 389 223 649 6.30e-61 208
Msa1044110 AT5G04690.1 37.457 291 175 4 91 379 327 612 6.34e-58 199
Msa1044110 AT5G04690.3 37.457 291 175 4 91 379 347 632 8.58e-58 199
Msa1044110 AT5G04690.2 37.457 291 175 4 91 379 361 646 1.53e-57 199
Msa1044110 AT5G04700.1 37.785 307 184 5 76 379 354 656 1.52e-56 197
Msa1044110 AT5G04730.1 36.774 310 184 5 86 393 296 595 8.71e-55 191
Msa1044110 AT5G04680.2 35.880 301 179 5 91 379 230 528 3.43e-49 174
Msa1044110 AT5G04680.3 35.443 316 187 7 76 379 327 637 6.88e-49 176
Msa1044110 AT5G04680.4 35.443 316 187 7 76 379 341 651 8.15e-49 176
Msa1044110 AT5G04680.1 35.443 316 187 7 76 379 370 680 1.39e-48 175
Msa1044110 AT3G54065.1 42.180 211 115 1 176 379 8 218 9.11e-48 163

Find 77 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGCAGAAGTTGGAAATTT+TGG 0.142363 7_2:+2319067 Msa1044110:CDS
AATCCACATATTAGCTTTAA+AGG 0.161265 7_2:-2319918 None:intergenic
AGTCAACTTGAATTGGTTTC+TGG 0.187623 7_2:+2319304 Msa1044110:CDS
TCCAATTGGTTAAATTTCTT+TGG 0.210384 7_2:+2318963 Msa1044110:CDS
AATCGAATGCCTTTGGATTC+TGG 0.211817 7_2:+2318790 Msa1044110:CDS
GTGTTTATCCTATCTTGATA+TGG 0.215889 7_2:+2319110 Msa1044110:CDS
TTTGAATAAAACATCATTCT+TGG 0.233931 7_2:+2319785 Msa1044110:CDS
CCTTTATATGCCCTATTTGA+TGG 0.261228 7_2:-2319207 None:intergenic
TTTACCAGGATTGGTCATTA+TGG 0.270043 7_2:-2318842 None:intergenic
TACTCTTCTTGTAATATATA+TGG 0.271851 7_2:+2320382 Msa1044110:three_prime_UTR
AAGAGAAGAATGCATGAAAA+AGG 0.277740 7_2:-2320332 None:intergenic
TTCCATCTGGTCCATCAAAT+AGG 0.287291 7_2:+2319196 Msa1044110:CDS
TCTCTTCTTGTCTCGCGTTA+TGG 0.293035 7_2:+2319870 Msa1044110:CDS
TCATTTACTCAACCTACTAT+TGG 0.299582 7_2:+2320105 Msa1044110:CDS
AAATGTGCGTCGAGTTACTA+TGG 0.340402 7_2:+2319338 Msa1044110:CDS
TCCAAAGAAATTTAACCAAT+TGG 0.347460 7_2:-2318964 None:intergenic
GGCTCAAAATCGAATGCCTT+TGG 0.350235 7_2:+2318783 Msa1044110:CDS
ACCACGAAGTCAACTTGAAT+TGG 0.364937 7_2:+2319297 Msa1044110:CDS
CCATCAAATAGGGCATATAA+AGG 0.365171 7_2:+2319207 Msa1044110:CDS
TTACCAGGATTGGTCATTAT+GGG 0.370620 7_2:-2318841 None:intergenic
TGTTTATCCTATCTTGATAT+GGG 0.373777 7_2:+2319111 Msa1044110:CDS
TCCATCTGGTCCATCAAATA+GGG 0.399442 7_2:+2319197 Msa1044110:CDS
ATGGGATTATGATCATGTTC+AGG 0.399531 7_2:-2318823 None:intergenic
AACCTATGTACAAAAGTATT+GGG 0.399981 7_2:-2320058 None:intergenic
AGAGACAGCTTTGCATCTCT+TGG 0.406984 7_2:+2318762 Msa1044110:CDS
ATATTTGATGCTGCAGAAGT+TGG 0.423304 7_2:+2319058 Msa1044110:CDS
ATGCAAGGGTTTACCAGGAT+TGG 0.425283 7_2:-2318851 None:intergenic
TTTCTCATCTTTATCTGTGC+AGG 0.431900 7_2:-2319576 None:intergenic
AAACCTATGTACAAAAGTAT+TGG 0.433272 7_2:-2320059 None:intergenic
TCCTATCTTGATATGGGATG+TGG 0.440711 7_2:+2319117 Msa1044110:CDS
CAGAAACACTTTATTGCACT+TGG 0.454500 7_2:+2319261 Msa1044110:CDS
TGCTACCATCATGCTTGTTA+CGG 0.458985 7_2:-2319958 None:intergenic
GCTGCTGCAACTACTTTACC+AGG 0.466568 7_2:+2319732 Msa1044110:CDS
TCCACATCCCATATCAAGAT+AGG 0.466758 7_2:-2319118 None:intergenic
TTTAAAGCTAATATGTGGAT+TGG 0.476951 7_2:+2319920 Msa1044110:CDS
GCCGACCATACCTACGAGAT+TGG 0.480450 7_2:-2320282 None:intergenic
ACCAATTCAAGTTGACTTCG+TGG 0.480782 7_2:-2319298 None:intergenic
CGTCGAGTTACTATGGTTTG+AGG 0.481581 7_2:+2319345 Msa1044110:CDS
CTCGTAGGTATGGTCGGCTC+CGG 0.484041 7_2:+2320287 Msa1044110:three_prime_UTR
GCATGCTAGTATATTCCATC+TGG 0.484064 7_2:+2319183 Msa1044110:CDS
CTGCCTTTAAAGCTAATATG+TGG 0.505807 7_2:+2319915 Msa1044110:CDS
AATAAACTCGAGAAATCTAC+GGG 0.506867 7_2:+2320228 Msa1044110:three_prime_UTR
ATTTCAACTGTCATTGCTAC+CGG 0.510096 7_2:+2319702 Msa1044110:CDS
AGATAGAGTACTCCAATAGT+AGG 0.512344 7_2:-2320117 None:intergenic
TAATAAACTCGAGAAATCTA+CGG 0.514087 7_2:+2320227 Msa1044110:three_prime_UTR
AATCCCATAATGACCAATCC+TGG 0.518539 7_2:+2318838 Msa1044110:CDS
CATCAAATAGGGCATATAAA+GGG 0.524642 7_2:+2319208 Msa1044110:CDS
GCCCTATTTGATGGACCAGA+TGG 0.528474 7_2:-2319198 None:intergenic
ACTTCAGCACTTCACCAATC+CGG 0.528581 7_2:-2320306 None:intergenic
ACGATCCAATCTCGTAGGTA+TGG 0.530992 7_2:+2320277 Msa1044110:three_prime_UTR
TGGAGTACTCTATCTAAGCC+TGG 0.538215 7_2:+2320125 Msa1044110:CDS
GAGAATATTGAGATGAAACT+AGG 0.541523 7_2:-2320029 None:intergenic
TGAAATTAGCATGCAAGACT+CGG 0.543920 7_2:-2319685 None:intergenic
AGGTATGGTCGGCTCCGGAT+TGG 0.548478 7_2:+2320292 Msa1044110:three_prime_UTR
AGTACTGCTATTTGTTACAA+AGG 0.553032 7_2:-2320363 None:intergenic
GCATCAAATATTAGTTGAGA+AGG 0.553049 7_2:-2319046 None:intergenic
TTAATGATTTCATTTAACTC+CGG 0.556416 7_2:-2319019 None:intergenic
CCAGAGTCATCAGTACCACC+TGG 0.576963 7_2:-2319750 None:intergenic
TTTACGTACTAGAGAAGTAG+TGG 0.582109 7_2:+2320159 Msa1044110:CDS
TACACATAGCTGTATTGCAT+CGG 0.583100 7_2:+2319161 Msa1044110:CDS
TCCAATCTCGTAGGTATGGT+CGG 0.584690 7_2:+2320281 Msa1044110:three_prime_UTR
ATACTACCATGGTTCGACAT+TGG 0.601191 7_2:+2320004 Msa1044110:CDS
TATCTCCGTAACAAGCATGA+TGG 0.602474 7_2:+2319953 Msa1044110:CDS
CCAGGTGGTACTGATGACTC+TGG 0.607373 7_2:+2319750 Msa1044110:CDS
TAAGAGAAAACGCAGAGTCG+TGG 0.621726 7_2:+2319649 Msa1044110:CDS
TAATAACGATCCAATCTCGT+AGG 0.624877 7_2:+2320272 Msa1044110:three_prime_UTR
ACAGATAAAGATGAGAAACT+CGG 0.632292 7_2:+2319581 Msa1044110:CDS
AAAACACTACTCATCAAAGC+CGG 0.635811 7_2:+2319000 Msa1044110:CDS
TTCTTCATAGTATACTACCA+TGG 0.636479 7_2:+2319993 Msa1044110:CDS
ATAAAGATGAGAAACTCGGA+AGG 0.662531 7_2:+2319585 Msa1044110:CDS
AGTTGCAGCAGCAAACACTC+CGG 0.666075 7_2:-2319721 None:intergenic
CAATGACAACCAGAATCCAA+AGG 0.669131 7_2:-2318799 None:intergenic
CTATGTACAAAAGTATTGGG+AGG 0.681529 7_2:-2320055 None:intergenic
AGACAAGAAAATCAATATCG+CGG 0.690792 7_2:-2319850 None:intergenic
TAGGAACCAATGTCGAACCA+TGG 0.693129 7_2:-2320010 None:intergenic
GCTGCAACTACTTTACCAGG+TGG 0.760899 7_2:+2319735 Msa1044110:CDS
ATAAACTCGAGAAATCTACG+GGG 0.843172 7_2:+2320229 Msa1044110:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAAATTTAATGCAA+GGG - chr7_2:2318868-2318887 None:intergenic 10.0%
!! AAAATATAAAATTTAATGCA+AGG - chr7_2:2318869-2318888 None:intergenic 10.0%
!!! TTTTTTAAATTCTTTTACAT+TGG + chr7_2:2318885-2318904 Msa1044110:intron 10.0%
!! TCAATAAAATGAATAAAAAA+GGG - chr7_2:2319385-2319404 None:intergenic 10.0%
!! AAATATAAAATTTAATGCAA+GGG - chr7_2:2318868-2318887 None:intergenic 10.0%
!! AAAATATAAAATTTAATGCA+AGG - chr7_2:2318869-2318888 None:intergenic 10.0%
!!! TTTTTTAAATTCTTTTACAT+TGG + chr7_2:2318885-2318904 Msa1044110:intron 10.0%
!! TCAATAAAATGAATAAAAAA+GGG - chr7_2:2319385-2319404 None:intergenic 10.0%
!! CTCAATAAAATGAATAAAAA+AGG - chr7_2:2319386-2319405 None:intergenic 15.0%
!! TATATAAATAAAACTCCTAA+TGG + chr7_2:2319445-2319464 Msa1044110:intron 15.0%
!! CTCAATAAAATGAATAAAAA+AGG - chr7_2:2319386-2319405 None:intergenic 15.0%
!! TATATAAATAAAACTCCTAA+TGG + chr7_2:2319445-2319464 Msa1044110:intron 15.0%
!! TTAATGATTTCATTTAACTC+CGG - chr7_2:2319022-2319041 None:intergenic 20.0%
!!! GTTTTATTTATATAGTGGAA+TGG - chr7_2:2319439-2319458 None:intergenic 20.0%
!!! TAGGAGTTTTATTTATATAG+TGG - chr7_2:2319444-2319463 None:intergenic 20.0%
!! TTTGAATAAAACATCATTCT+TGG + chr7_2:2319785-2319804 Msa1044110:CDS 20.0%
!! TACTCTTCTTGTAATATATA+TGG + chr7_2:2320382-2320401 Msa1044110:three_prime_UTR 20.0%
!! TTAATGATTTCATTTAACTC+CGG - chr7_2:2319022-2319041 None:intergenic 20.0%
!!! GTTTTATTTATATAGTGGAA+TGG - chr7_2:2319439-2319458 None:intergenic 20.0%
!!! TAGGAGTTTTATTTATATAG+TGG - chr7_2:2319444-2319463 None:intergenic 20.0%
!! TTTGAATAAAACATCATTCT+TGG + chr7_2:2319785-2319804 Msa1044110:CDS 20.0%
!! TACTCTTCTTGTAATATATA+TGG + chr7_2:2320382-2320401 Msa1044110:three_prime_UTR 20.0%
! TCCAATTGGTTAAATTTCTT+TGG + chr7_2:2318963-2318982 Msa1044110:CDS 25.0%
! TCCAAAGAAATTTAACCAAT+TGG - chr7_2:2318967-2318986 None:intergenic 25.0%
! TGTTTATCCTATCTTGATAT+GGG + chr7_2:2319111-2319130 Msa1044110:CDS 25.0%
!!! GATGTTTTATTCAAATAGTG+TGG - chr7_2:2319780-2319799 None:intergenic 25.0%
!!! AATCCACATATTAGCTTTAA+AGG - chr7_2:2319921-2319940 None:intergenic 25.0%
!! TTTAAAGCTAATATGTGGAT+TGG + chr7_2:2319920-2319939 Msa1044110:CDS 25.0%
!!! AACCTATGTACAAAAGTATT+GGG - chr7_2:2320061-2320080 None:intergenic 25.0%
!! AAACCTATGTACAAAAGTAT+TGG - chr7_2:2320062-2320081 None:intergenic 25.0%
! TAATAAACTCGAGAAATCTA+CGG + chr7_2:2320227-2320246 Msa1044110:three_prime_UTR 25.0%
! TCCAATTGGTTAAATTTCTT+TGG + chr7_2:2318963-2318982 Msa1044110:CDS 25.0%
! TCCAAAGAAATTTAACCAAT+TGG - chr7_2:2318967-2318986 None:intergenic 25.0%
! TGTTTATCCTATCTTGATAT+GGG + chr7_2:2319111-2319130 Msa1044110:CDS 25.0%
!!! GATGTTTTATTCAAATAGTG+TGG - chr7_2:2319780-2319799 None:intergenic 25.0%
!!! AATCCACATATTAGCTTTAA+AGG - chr7_2:2319921-2319940 None:intergenic 25.0%
!! TTTAAAGCTAATATGTGGAT+TGG + chr7_2:2319920-2319939 Msa1044110:CDS 25.0%
!!! AACCTATGTACAAAAGTATT+GGG - chr7_2:2320061-2320080 None:intergenic 25.0%
!! AAACCTATGTACAAAAGTAT+TGG - chr7_2:2320062-2320081 None:intergenic 25.0%
! TAATAAACTCGAGAAATCTA+CGG + chr7_2:2320227-2320246 Msa1044110:three_prime_UTR 25.0%
!! AAATCACGTTGTTTTCCAAT+TGG + chr7_2:2318949-2318968 Msa1044110:CDS 30.0%
GCATCAAATATTAGTTGAGA+AGG - chr7_2:2319049-2319068 None:intergenic 30.0%
GTGTTTATCCTATCTTGATA+TGG + chr7_2:2319110-2319129 Msa1044110:CDS 30.0%
CATCAAATAGGGCATATAAA+GGG + chr7_2:2319208-2319227 Msa1044110:CDS 30.0%
! TTATATTGCTATTGACACAG+TGG - chr7_2:2319483-2319502 None:intergenic 30.0%
ACAGATAAAGATGAGAAACT+CGG + chr7_2:2319581-2319600 Msa1044110:CDS 30.0%
AGACAAGAAAATCAATATCG+CGG - chr7_2:2319853-2319872 None:intergenic 30.0%
TTCTTCATAGTATACTACCA+TGG + chr7_2:2319993-2320012 Msa1044110:CDS 30.0%
GAGAATATTGAGATGAAACT+AGG - chr7_2:2320032-2320051 None:intergenic 30.0%
TCATTTACTCAACCTACTAT+TGG + chr7_2:2320105-2320124 Msa1044110:CDS 30.0%
!! ACGTAAATCATATTTTTGCC+AGG - chr7_2:2320146-2320165 None:intergenic 30.0%
AATAAACTCGAGAAATCTAC+GGG + chr7_2:2320228-2320247 Msa1044110:three_prime_UTR 30.0%
AGAGAAGAATGCATGAAAAA+GGG - chr7_2:2320334-2320353 None:intergenic 30.0%
AAGAGAAGAATGCATGAAAA+AGG - chr7_2:2320335-2320354 None:intergenic 30.0%
! AGTACTGCTATTTGTTACAA+AGG - chr7_2:2320366-2320385 None:intergenic 30.0%
!! AAATCACGTTGTTTTCCAAT+TGG + chr7_2:2318949-2318968 Msa1044110:CDS 30.0%
GCATCAAATATTAGTTGAGA+AGG - chr7_2:2319049-2319068 None:intergenic 30.0%
GTGTTTATCCTATCTTGATA+TGG + chr7_2:2319110-2319129 Msa1044110:CDS 30.0%
CATCAAATAGGGCATATAAA+GGG + chr7_2:2319208-2319227 Msa1044110:CDS 30.0%
! TTATATTGCTATTGACACAG+TGG - chr7_2:2319483-2319502 None:intergenic 30.0%
ACAGATAAAGATGAGAAACT+CGG + chr7_2:2319581-2319600 Msa1044110:CDS 30.0%
AGACAAGAAAATCAATATCG+CGG - chr7_2:2319853-2319872 None:intergenic 30.0%
TTCTTCATAGTATACTACCA+TGG + chr7_2:2319993-2320012 Msa1044110:CDS 30.0%
GAGAATATTGAGATGAAACT+AGG - chr7_2:2320032-2320051 None:intergenic 30.0%
TCATTTACTCAACCTACTAT+TGG + chr7_2:2320105-2320124 Msa1044110:CDS 30.0%
!! ACGTAAATCATATTTTTGCC+AGG - chr7_2:2320146-2320165 None:intergenic 30.0%
AATAAACTCGAGAAATCTAC+GGG + chr7_2:2320228-2320247 Msa1044110:three_prime_UTR 30.0%
AGAGAAGAATGCATGAAAAA+GGG - chr7_2:2320334-2320353 None:intergenic 30.0%
AAGAGAAGAATGCATGAAAA+AGG - chr7_2:2320335-2320354 None:intergenic 30.0%
! AGTACTGCTATTTGTTACAA+AGG - chr7_2:2320366-2320385 None:intergenic 30.0%
ATGGGATTATGATCATGTTC+AGG - chr7_2:2318826-2318845 None:intergenic 35.0%
!! TTACCAGGATTGGTCATTAT+GGG - chr7_2:2318844-2318863 None:intergenic 35.0%
!! TTTACCAGGATTGGTCATTA+TGG - chr7_2:2318845-2318864 None:intergenic 35.0%
ATTTAATGCAAGGGTTTACC+AGG - chr7_2:2318859-2318878 None:intergenic 35.0%
GTAACCATATTTCGTATTGC+AGG + chr7_2:2318920-2318939 Msa1044110:intron 35.0%
!!! GTAGTGTTTTTCAAGAATCG+TGG - chr7_2:2318990-2319009 None:intergenic 35.0%
AAAACACTACTCATCAAAGC+CGG + chr7_2:2319000-2319019 Msa1044110:CDS 35.0%
ATATTTGATGCTGCAGAAGT+TGG + chr7_2:2319058-2319077 Msa1044110:CDS 35.0%
TACACATAGCTGTATTGCAT+CGG + chr7_2:2319161-2319180 Msa1044110:CDS 35.0%
CCTTTATATGCCCTATTTGA+TGG - chr7_2:2319210-2319229 None:intergenic 35.0%
CCATCAAATAGGGCATATAA+AGG + chr7_2:2319207-2319226 Msa1044110:CDS 35.0%
CAGAAACACTTTATTGCACT+TGG + chr7_2:2319261-2319280 Msa1044110:CDS 35.0%
! AGTCAACTTGAATTGGTTTC+TGG + chr7_2:2319304-2319323 Msa1044110:CDS 35.0%
! TATAGTGGAATGGATAAGTG+TGG - chr7_2:2319429-2319448 None:intergenic 35.0%
TTTCTCATCTTTATCTGTGC+AGG - chr7_2:2319579-2319598 None:intergenic 35.0%
ATAAAGATGAGAAACTCGGA+AGG + chr7_2:2319585-2319604 Msa1044110:CDS 35.0%
TGAAATTAGCATGCAAGACT+CGG - chr7_2:2319688-2319707 None:intergenic 35.0%
ATTTCAACTGTCATTGCTAC+CGG + chr7_2:2319702-2319721 Msa1044110:CDS 35.0%
!! CTGCCTTTAAAGCTAATATG+TGG + chr7_2:2319915-2319934 Msa1044110:CDS 35.0%
!! CTATGTACAAAAGTATTGGG+AGG - chr7_2:2320058-2320077 None:intergenic 35.0%
! CTCCCAATACTTTTGTACAT+AGG + chr7_2:2320056-2320075 Msa1044110:CDS 35.0%
! AGATAGAGTACTCCAATAGT+AGG - chr7_2:2320120-2320139 None:intergenic 35.0%
TTTACGTACTAGAGAAGTAG+TGG + chr7_2:2320159-2320178 Msa1044110:CDS 35.0%
ATAAACTCGAGAAATCTACG+GGG + chr7_2:2320229-2320248 Msa1044110:three_prime_UTR 35.0%
TAATAACGATCCAATCTCGT+AGG + chr7_2:2320272-2320291 Msa1044110:three_prime_UTR 35.0%
ATGGGATTATGATCATGTTC+AGG - chr7_2:2318826-2318845 None:intergenic 35.0%
!! TTACCAGGATTGGTCATTAT+GGG - chr7_2:2318844-2318863 None:intergenic 35.0%
!! TTTACCAGGATTGGTCATTA+TGG - chr7_2:2318845-2318864 None:intergenic 35.0%
ATTTAATGCAAGGGTTTACC+AGG - chr7_2:2318859-2318878 None:intergenic 35.0%
GTAACCATATTTCGTATTGC+AGG + chr7_2:2318920-2318939 Msa1044110:intron 35.0%
!!! GTAGTGTTTTTCAAGAATCG+TGG - chr7_2:2318990-2319009 None:intergenic 35.0%
AAAACACTACTCATCAAAGC+CGG + chr7_2:2319000-2319019 Msa1044110:CDS 35.0%
ATATTTGATGCTGCAGAAGT+TGG + chr7_2:2319058-2319077 Msa1044110:CDS 35.0%
TACACATAGCTGTATTGCAT+CGG + chr7_2:2319161-2319180 Msa1044110:CDS 35.0%
CCTTTATATGCCCTATTTGA+TGG - chr7_2:2319210-2319229 None:intergenic 35.0%
CCATCAAATAGGGCATATAA+AGG + chr7_2:2319207-2319226 Msa1044110:CDS 35.0%
CAGAAACACTTTATTGCACT+TGG + chr7_2:2319261-2319280 Msa1044110:CDS 35.0%
! AGTCAACTTGAATTGGTTTC+TGG + chr7_2:2319304-2319323 Msa1044110:CDS 35.0%
! TATAGTGGAATGGATAAGTG+TGG - chr7_2:2319429-2319448 None:intergenic 35.0%
TTTCTCATCTTTATCTGTGC+AGG - chr7_2:2319579-2319598 None:intergenic 35.0%
ATAAAGATGAGAAACTCGGA+AGG + chr7_2:2319585-2319604 Msa1044110:CDS 35.0%
TGAAATTAGCATGCAAGACT+CGG - chr7_2:2319688-2319707 None:intergenic 35.0%
ATTTCAACTGTCATTGCTAC+CGG + chr7_2:2319702-2319721 Msa1044110:CDS 35.0%
!! CTGCCTTTAAAGCTAATATG+TGG + chr7_2:2319915-2319934 Msa1044110:CDS 35.0%
!! CTATGTACAAAAGTATTGGG+AGG - chr7_2:2320058-2320077 None:intergenic 35.0%
! CTCCCAATACTTTTGTACAT+AGG + chr7_2:2320056-2320075 Msa1044110:CDS 35.0%
! AGATAGAGTACTCCAATAGT+AGG - chr7_2:2320120-2320139 None:intergenic 35.0%
TTTACGTACTAGAGAAGTAG+TGG + chr7_2:2320159-2320178 Msa1044110:CDS 35.0%
ATAAACTCGAGAAATCTACG+GGG + chr7_2:2320229-2320248 Msa1044110:three_prime_UTR 35.0%
TAATAACGATCCAATCTCGT+AGG + chr7_2:2320272-2320291 Msa1044110:three_prime_UTR 35.0%
AATCGAATGCCTTTGGATTC+TGG + chr7_2:2318790-2318809 Msa1044110:CDS 40.0%
CAATGACAACCAGAATCCAA+AGG - chr7_2:2318802-2318821 None:intergenic 40.0%
AATCCCATAATGACCAATCC+TGG + chr7_2:2318838-2318857 Msa1044110:CDS 40.0%
CATGCCTGCAATACGAAATA+TGG - chr7_2:2318927-2318946 None:intergenic 40.0%
! GCTGCAGAAGTTGGAAATTT+TGG + chr7_2:2319067-2319086 Msa1044110:CDS 40.0%
TCCTATCTTGATATGGGATG+TGG + chr7_2:2319117-2319136 Msa1044110:CDS 40.0%
TCCACATCCCATATCAAGAT+AGG - chr7_2:2319121-2319140 None:intergenic 40.0%
GCATGCTAGTATATTCCATC+TGG + chr7_2:2319183-2319202 Msa1044110:CDS 40.0%
TTCCATCTGGTCCATCAAAT+AGG + chr7_2:2319196-2319215 Msa1044110:CDS 40.0%
TCCATCTGGTCCATCAAATA+GGG + chr7_2:2319197-2319216 Msa1044110:CDS 40.0%
ACCACGAAGTCAACTTGAAT+TGG + chr7_2:2319297-2319316 Msa1044110:CDS 40.0%
!! ACCAATTCAAGTTGACTTCG+TGG - chr7_2:2319301-2319320 None:intergenic 40.0%
AAATGTGCGTCGAGTTACTA+TGG + chr7_2:2319338-2319357 Msa1044110:CDS 40.0%
TGGCAAACACATACTCCATT+AGG - chr7_2:2319463-2319482 None:intergenic 40.0%
TATCTCCGTAACAAGCATGA+TGG + chr7_2:2319953-2319972 Msa1044110:CDS 40.0%
! TGCTACCATCATGCTTGTTA+CGG - chr7_2:2319961-2319980 None:intergenic 40.0%
ATACTACCATGGTTCGACAT+TGG + chr7_2:2320004-2320023 Msa1044110:CDS 40.0%
AATCGAATGCCTTTGGATTC+TGG + chr7_2:2318790-2318809 Msa1044110:CDS 40.0%
CAATGACAACCAGAATCCAA+AGG - chr7_2:2318802-2318821 None:intergenic 40.0%
AATCCCATAATGACCAATCC+TGG + chr7_2:2318838-2318857 Msa1044110:CDS 40.0%
CATGCCTGCAATACGAAATA+TGG - chr7_2:2318927-2318946 None:intergenic 40.0%
! GCTGCAGAAGTTGGAAATTT+TGG + chr7_2:2319067-2319086 Msa1044110:CDS 40.0%
TCCTATCTTGATATGGGATG+TGG + chr7_2:2319117-2319136 Msa1044110:CDS 40.0%
TCCACATCCCATATCAAGAT+AGG - chr7_2:2319121-2319140 None:intergenic 40.0%
GCATGCTAGTATATTCCATC+TGG + chr7_2:2319183-2319202 Msa1044110:CDS 40.0%
TTCCATCTGGTCCATCAAAT+AGG + chr7_2:2319196-2319215 Msa1044110:CDS 40.0%
TCCATCTGGTCCATCAAATA+GGG + chr7_2:2319197-2319216 Msa1044110:CDS 40.0%
ACCACGAAGTCAACTTGAAT+TGG + chr7_2:2319297-2319316 Msa1044110:CDS 40.0%
!! ACCAATTCAAGTTGACTTCG+TGG - chr7_2:2319301-2319320 None:intergenic 40.0%
AAATGTGCGTCGAGTTACTA+TGG + chr7_2:2319338-2319357 Msa1044110:CDS 40.0%
TGGCAAACACATACTCCATT+AGG - chr7_2:2319463-2319482 None:intergenic 40.0%
TATCTCCGTAACAAGCATGA+TGG + chr7_2:2319953-2319972 Msa1044110:CDS 40.0%
! TGCTACCATCATGCTTGTTA+CGG - chr7_2:2319961-2319980 None:intergenic 40.0%
ATACTACCATGGTTCGACAT+TGG + chr7_2:2320004-2320023 Msa1044110:CDS 40.0%
AGAGACAGCTTTGCATCTCT+TGG + chr7_2:2318762-2318781 Msa1044110:CDS 45.0%
GGCTCAAAATCGAATGCCTT+TGG + chr7_2:2318783-2318802 Msa1044110:CDS 45.0%
ATGCAAGGGTTTACCAGGAT+TGG - chr7_2:2318854-2318873 None:intergenic 45.0%
CGTCGAGTTACTATGGTTTG+AGG + chr7_2:2319345-2319364 Msa1044110:CDS 45.0%
TAAGAGAAAACGCAGAGTCG+TGG + chr7_2:2319649-2319668 Msa1044110:CDS 45.0%
TCTCTTCTTGTCTCGCGTTA+TGG + chr7_2:2319870-2319889 Msa1044110:CDS 45.0%
TAGGAACCAATGTCGAACCA+TGG - chr7_2:2320013-2320032 None:intergenic 45.0%
! TGGAGTACTCTATCTAAGCC+TGG + chr7_2:2320125-2320144 Msa1044110:CDS 45.0%
ACGATCCAATCTCGTAGGTA+TGG + chr7_2:2320277-2320296 Msa1044110:three_prime_UTR 45.0%
TCCAATCTCGTAGGTATGGT+CGG + chr7_2:2320281-2320300 Msa1044110:three_prime_UTR 45.0%
ACTTCAGCACTTCACCAATC+CGG - chr7_2:2320309-2320328 None:intergenic 45.0%
AGAGACAGCTTTGCATCTCT+TGG + chr7_2:2318762-2318781 Msa1044110:CDS 45.0%
GGCTCAAAATCGAATGCCTT+TGG + chr7_2:2318783-2318802 Msa1044110:CDS 45.0%
ATGCAAGGGTTTACCAGGAT+TGG - chr7_2:2318854-2318873 None:intergenic 45.0%
CGTCGAGTTACTATGGTTTG+AGG + chr7_2:2319345-2319364 Msa1044110:CDS 45.0%
TAAGAGAAAACGCAGAGTCG+TGG + chr7_2:2319649-2319668 Msa1044110:CDS 45.0%
TCTCTTCTTGTCTCGCGTTA+TGG + chr7_2:2319870-2319889 Msa1044110:CDS 45.0%
TAGGAACCAATGTCGAACCA+TGG - chr7_2:2320013-2320032 None:intergenic 45.0%
! TGGAGTACTCTATCTAAGCC+TGG + chr7_2:2320125-2320144 Msa1044110:CDS 45.0%
ACGATCCAATCTCGTAGGTA+TGG + chr7_2:2320277-2320296 Msa1044110:three_prime_UTR 45.0%
TCCAATCTCGTAGGTATGGT+CGG + chr7_2:2320281-2320300 Msa1044110:three_prime_UTR 45.0%
ACTTCAGCACTTCACCAATC+CGG - chr7_2:2320309-2320328 None:intergenic 45.0%
! GCCCTATTTGATGGACCAGA+TGG - chr7_2:2319201-2319220 None:intergenic 50.0%
AGTTGCAGCAGCAAACACTC+CGG - chr7_2:2319724-2319743 None:intergenic 50.0%
GCTGCTGCAACTACTTTACC+AGG + chr7_2:2319732-2319751 Msa1044110:CDS 50.0%
GCTGCAACTACTTTACCAGG+TGG + chr7_2:2319735-2319754 Msa1044110:CDS 50.0%
! GCCCTATTTGATGGACCAGA+TGG - chr7_2:2319201-2319220 None:intergenic 50.0%
AGTTGCAGCAGCAAACACTC+CGG - chr7_2:2319724-2319743 None:intergenic 50.0%
GCTGCTGCAACTACTTTACC+AGG + chr7_2:2319732-2319751 Msa1044110:CDS 50.0%
GCTGCAACTACTTTACCAGG+TGG + chr7_2:2319735-2319754 Msa1044110:CDS 50.0%
CCAGAGTCATCAGTACCACC+TGG - chr7_2:2319753-2319772 None:intergenic 55.0%
!! CCAGGTGGTACTGATGACTC+TGG + chr7_2:2319750-2319769 Msa1044110:CDS 55.0%
GCCGACCATACCTACGAGAT+TGG - chr7_2:2320285-2320304 None:intergenic 55.0%
CCAGAGTCATCAGTACCACC+TGG - chr7_2:2319753-2319772 None:intergenic 55.0%
!! CCAGGTGGTACTGATGACTC+TGG + chr7_2:2319750-2319769 Msa1044110:CDS 55.0%
GCCGACCATACCTACGAGAT+TGG - chr7_2:2320285-2320304 None:intergenic 55.0%
! CTCGTAGGTATGGTCGGCTC+CGG + chr7_2:2320287-2320306 Msa1044110:three_prime_UTR 60.0%
! AGGTATGGTCGGCTCCGGAT+TGG + chr7_2:2320292-2320311 Msa1044110:three_prime_UTR 60.0%
! CTCGTAGGTATGGTCGGCTC+CGG + chr7_2:2320287-2320306 Msa1044110:three_prime_UTR 60.0%
! AGGTATGGTCGGCTCCGGAT+TGG + chr7_2:2320292-2320311 Msa1044110:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 2318715 2320436 2318715 ID=Msa1044110;Name=Msa1044110
chr7_2 mRNA 2318715 2320436 2318715 ID=Msa1044110-mRNA-1;Parent=Msa1044110;Name=Msa1044110-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.5|0.33|1|1|1|3|258|397
chr7_2 exon 2318715 2318859 2318715 ID=Msa1044110-mRNA-1:exon:557;Parent=Msa1044110-mRNA-1
chr7_2 exon 2318942 2319366 2318942 ID=Msa1044110-mRNA-1:exon:558;Parent=Msa1044110-mRNA-1
chr7_2 exon 2319555 2320436 2319555 ID=Msa1044110-mRNA-1:exon:559;Parent=Msa1044110-mRNA-1
chr7_2 CDS 2318715 2318859 2318715 ID=Msa1044110-mRNA-1:cds;Parent=Msa1044110-mRNA-1
chr7_2 CDS 2318942 2319366 2318942 ID=Msa1044110-mRNA-1:cds;Parent=Msa1044110-mRNA-1
chr7_2 CDS 2319555 2320178 2319555 ID=Msa1044110-mRNA-1:cds;Parent=Msa1044110-mRNA-1
chr7_2 three_prime_UTR 2320179 2320436 2320179 ID=Msa1044110-mRNA-1:three_prime_utr;Parent=Msa1044110-mRNA-1
Gene Sequence

>Msa1044110

ATGGTAAGAGATAGGAATGCACTAGCTTTTGCACGTGATGTGAATGAAGAGACAGCTTTGCATCTCTTGGCTCAAAATCGAATGCCTTTGGATTCTGGTTGTCATTGTCCTGAACATGATCATAATCCCATAATGACCAATCCTGGCATGAAAAATCACGTTGTTTTCCAATTGGTTAAATTTCTTTGGACCACGATTCTTGAAAAACACTACTCATCAAAGCCGGAGTTAAATGAAATCATTAATCAACCTTCTCAACTAATATTTGATGCTGCAGAAGTTGGAAATTTTGGATTCTTATCAGAGCTTATTAGTGTTTATCCTATCTTGATATGGGATGTGGATAGCAAAAATCGTACTATATTACACATAGCTGTATTGCATCGGCATGCTAGTATATTCCATCTGGTCCATCAAATAGGGCATATAAAGGGTATCATTGTAACATATGAAAATGATGATGACAGAAACACTTTATTGCACTTGGCTGCAAAATTAGCACCACGAAGTCAACTTGAATTGGTTTCTGGAGCTGCTTTTCAAATGTGCGTCGAGTTACTATGGTTTGAGAAAGTAAAGAAGATAATGTTGCCTGCACAGATAAAGATGAGAAACTCGGAAGGCTTTACTGCACAAGAGCTATTCTCAATTGAGCATGAAACACTAAGAGAAAACGCAGAGTCGTGGATGAAAAAAACTGCCGAGTCTTGCATGCTAATTTCAACTGTCATTGCTACCGGAGTGTTTGCTGCTGCAACTACTTTACCAGGTGGTACTGATGACTCTGGAAAACCACACTATTTGAATAAAACATCATTCTTGGTGTTTGCAATATCAGATGCATCTGCATTCATCTCATCTGCGACCGCGATATTGATTTTCTTGTCTCTTCTTGTCTCGCGTTATGGAGAGTATGACTTCTATAAATCACTGCCTTTAAAGCTAATATGTGGATTGGTCACATTATTTATCTCCGTAACAAGCATGATGGTAGCATTAAGTACTAACTTCTTCATAGTATACTACCATGGTTCGACATTGGTTCCTAGTTTCATCTCAATATTCTCTTTCCTCCCAATACTTTTGTACATAGGTTTGCAATATTCTTTGTTTTCAGATATCATTTACTCAACCTACTATTGGAGTACTCTATCTAAGCCTGGCAAAAATATGATTTACGTACTAGAGAAGTAG
Protein sequence

>Msa1044110

MVRDRNALAFARDVNEETALHLLAQNRMPLDSGCHCPEHDHNPIMTNPGMKNHVVFQLVKFLWTTILEKHYSSKPELNEIINQPSQLIFDAAEVGNFGFLSELISVYPILIWDVDSKNRTILHIAVLHRHASIFHLVHQIGHIKGIIVTYENDDDRNTLLHLAAKLAPRSQLELVSGAAFQMCVELLWFEKVKKIMLPAQIKMRNSEGFTAQELFSIEHETLRENAESWMKKTAESCMLISTVIATGVFAAATTLPGGTDDSGKPHYLNKTSFLVFAISDASAFISSATAILIFLSLLVSRYGEYDFYKSLPLKLICGLVTLFISVTSMMVALSTNFFIVYYHGSTLVPSFISIFSFLPILLYIGLQYSLFSDIIYSTYYWSTLSKPGKNMIYVLEK*