AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0243900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0243900 MtrunA17_Chr2g0297681 89.892 277 28 0 1 277 1 277 0.0 526
Msa0243900 MtrunA17_Chr2g0297691 83.513 279 44 2 1 277 1 279 5.11e-168 482
Msa0243900 MtrunA17_Chr2g0297651 81.362 279 50 1 1 277 1 279 2.46e-163 470
Msa0243900 MtrunA17_Chr2g0297631 73.519 287 63 3 1 277 1 284 1.48e-137 409
Msa0243900 MtrunA17_Chr2g0297541 69.474 190 47 1 1 179 1 190 1.79e-93 274
Msa0243900 MtrunA17_Chr2g0297701 47.771 157 77 2 126 279 12 166 2.62e-44 158
Msa0243900 MtrunA17_Chr2g0297711 47.059 136 67 1 138 273 33 163 7.73e-35 131
Msa0243900 MtrunA17_Chr2g0297511 72.973 74 20 0 5 78 1 74 3.74e-34 119
Msa0243900 MtrunA17_Chr2g0297531 76.562 64 15 0 214 277 1 64 1.04e-26 103
Msa0243900 MtrunA17_Chr2g0297501 75.000 64 16 0 214 277 1 64 1.21e-25 97.4
Msa0243900 MtrunA17_Chr2g0297481 77.778 63 14 0 214 276 1 63 7.56e-25 103
Msa0243900 MtrunA17_Chr8g0356571 31.250 112 75 1 1 110 1 112 5.16e-15 71.6
Msa0243900 MtrunA17_Chr0c01g0489151 32.075 106 69 1 5 110 7 109 3.94e-14 70.9
Msa0243900 MtrunA17_Chr7g0224661 32.075 106 69 1 5 110 7 109 1.05e-13 70.5
Msa0243900 MtrunA17_Chr3g0108461 31.633 98 65 1 2 97 4 101 3.53e-12 62.0
Msa0243900 MtrunA17_Chr1g0211531 31.092 119 82 0 161 279 23 141 1.65e-11 64.3
Msa0243900 MtrunA17_Chr1g0211541 37.209 86 54 0 194 279 32 117 2.10e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0243900 AT5G35830.1 42.975 121 69 0 159 279 89 209 8.91e-26 103
Msa0243900 AT3G54070.1 33.613 119 79 0 161 279 54 172 4.09e-14 70.9

Find 141 sgRNAs with CRISPR-Local

Find 510 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAGATCATCTGGATTTA+TGG 0.100523 2_2:+21633229 None:intergenic
GCTGCAGAAGTTGGAAATTT+TGG 0.142363 2_2:-21630501 Msa0243900:three_prime_UTR
AATCCACATATTAGCTTTAA+AGG 0.161265 2_2:+21629650 None:intergenic
AGTCAACTTGAATTGGTTTC+TGG 0.187623 2_2:-21630264 Msa0243900:three_prime_UTR
TCCAATTGGTTAAATTTCTT+TGG 0.210384 2_2:-21630605 Msa0243900:three_prime_UTR
AATCGAATGCCTTTGGATTC+TGG 0.211817 2_2:-21630778 Msa0243900:three_prime_UTR
TTTGAATAAAACATCATTCT+TGG 0.233931 2_2:-21629783 Msa0243900:three_prime_UTR
ACCCACTGTTACCTGTAAAA+AGG 0.245812 2_2:-21631828 Msa0243900:CDS
CATAAAGGAATGGAAAATTA+AGG 0.250702 2_2:+21638130 None:intergenic
GTGTTTATCCTAGCTTGATA+TGG 0.254743 2_2:-21630458 Msa0243900:three_prime_UTR
CCTTTATATGCCCTATTTGA+TGG 0.261228 2_2:+21630361 None:intergenic
TTTACCAGGATTGGTCATTA+TGG 0.270043 2_2:+21630726 None:intergenic
TACTCTTCTTGTAATATATA+TGG 0.271851 2_2:-21629186 Msa0243900:three_prime_UTR
ATTCACAAGCATGCTCTAAA+TGG 0.276178 2_2:-21632096 Msa0243900:CDS
AAGAGAAGAATGCATGAAAA+AGG 0.277740 2_2:+21629236 None:intergenic
CCTGGAGGAAATACGATAAA+AGG 0.284931 2_2:+21636185 None:intergenic
TTCCATCTGGTCCATCAAAT+AGG 0.287291 2_2:-21630372 Msa0243900:three_prime_UTR
GCGGGTGCTTGTGGTGATAC+TGG 0.298679 2_2:+21633015 None:intergenic
TCATTTACTCAACCTACTAT+TGG 0.299582 2_2:-21629463 Msa0243900:three_prime_UTR
TCTATTCTTGTCTCGCGTTA+TGG 0.309263 2_2:-21629698 Msa0243900:three_prime_UTR
TGTATCTACACTGGCATCTA+TGG 0.319961 2_2:-21631705 Msa0243900:three_prime_UTR
GTGCTTCCCTTTGGCCGATT+TGG 0.323368 2_2:+21638295 None:intergenic
AAATGTGCGTCGAGTTACTA+TGG 0.340402 2_2:-21630230 Msa0243900:three_prime_UTR
TCCAAAGAAATTTAACCAAT+TGG 0.347460 2_2:+21630604 None:intergenic
GGCTCAAAATCGAATGCCTT+TGG 0.350235 2_2:-21630785 Msa0243900:three_prime_UTR
GAAATTCTCTTAAGATCATC+TGG 0.353028 2_2:+21633221 None:intergenic
ACCACGAAGTCAACTTGAAT+TGG 0.364937 2_2:-21630271 Msa0243900:three_prime_UTR
CCATCAAATAGGGCATATAA+AGG 0.365171 2_2:-21630361 Msa0243900:three_prime_UTR
TTACCAGGATTGGTCATTAT+GGG 0.370620 2_2:+21630727 None:intergenic
TCCATCTGGTCCATCAAATA+GGG 0.399442 2_2:-21630371 Msa0243900:three_prime_UTR
ATGGGATTATGATCATGTTC+AGG 0.399531 2_2:+21630745 None:intergenic
AACCTATGTACAAAAGTATT+GGG 0.399981 2_2:+21629510 None:intergenic
TTTAAGGCTAAGTCTGCAAT+TGG 0.404189 2_2:+21630877 None:intergenic
AGAGACAGCTTTGCATCTCT+TGG 0.406984 2_2:-21630806 Msa0243900:three_prime_UTR
TTTGAAGAATTATTGCTGAT+TGG 0.412876 2_2:+21638175 None:intergenic
AGCATGCTCTAAATGGAAAC+TGG 0.416905 2_2:-21632089 Msa0243900:CDS
TGTAGGCCACCCATTTGTTA+TGG 0.417839 2_2:+21632017 None:intergenic
TGTTTATCCTAGCTTGATAT+GGG 0.418566 2_2:-21630457 Msa0243900:three_prime_UTR
ATATTTGATGCTGCAGAAGT+TGG 0.423304 2_2:-21630510 Msa0243900:three_prime_UTR
ATGCAAGGGTTTACCAGGAT+TGG 0.425283 2_2:+21630717 None:intergenic
CAGTTTGTACCATCGAAGTA+TGG 0.429133 2_2:+21633449 None:intergenic
ATTTAGAGCATGCTTGTGAA+TGG 0.431297 2_2:+21632098 None:intergenic
ACTTCAGTACTTCACCAATC+CGG 0.431391 2_2:+21629262 None:intergenic
TTTCTCATCTTTATCTGTGC+AGG 0.431900 2_2:+21629992 None:intergenic
AAACCTATGTACAAAAGTAT+TGG 0.433272 2_2:+21629509 None:intergenic
GATAAATGAAGGAGAGAAGA+AGG 0.433386 2_2:+21638254 None:intergenic
GAGAATTTCAAGTTGTCAAA+CGG 0.439198 2_2:-21633207 Msa0243900:CDS
TCTAAGATGCGCTTGGCTGC+TGG 0.440589 2_2:+21632066 None:intergenic
GAAGTATGGTGGCTTTGAAA+TGG 0.449020 2_2:+21633463 None:intergenic
ATAAAGGAATGGAAAATTAA+GGG 0.450347 2_2:+21638131 None:intergenic
AATCAGTTGACTACAAACTT+TGG 0.451937 2_2:-21633391 Msa0243900:CDS
CAGAAACACTTTATTGCACT+TGG 0.454500 2_2:-21630307 Msa0243900:three_prime_UTR
GCCGACCATACCTAGGAGAT+TGG 0.455937 2_2:+21629286 None:intergenic
CTTCAGTACTTCACCAATCC+GGG 0.456366 2_2:+21629263 None:intergenic
TGCTACCATCATGCTTGTTA+CGG 0.458985 2_2:+21629610 None:intergenic
GCTGCTGCAACTACTTTACC+AGG 0.466568 2_2:-21629836 Msa0243900:three_prime_UTR
TCCTAGCTTGATATGGGATG+TGG 0.473173 2_2:-21630451 Msa0243900:three_prime_UTR
AGGTATGGTCGGCCCCGGAT+TGG 0.476832 2_2:-21629276 Msa0243900:three_prime_UTR
TTTAAAGCTAATATGTGGAT+TGG 0.476951 2_2:-21629648 Msa0243900:three_prime_UTR
AAGAAGATTGTGATAAATGA+AGG 0.478631 2_2:+21638243 None:intergenic
ACCAATTCAAGTTGACTTCG+TGG 0.480782 2_2:+21630270 None:intergenic
CGTCGAGTTACTATGGTTTG+AGG 0.481581 2_2:-21630223 Msa0243900:intron
GCATGCTAGTATATTCCATC+TGG 0.484064 2_2:-21630385 Msa0243900:three_prime_UTR
TGCAAAGCAGCATACTGAAT+AGG 0.493023 2_2:+21631787 None:intergenic
TTTAGAGCATGCTTGTGAAT+GGG 0.494360 2_2:+21632099 None:intergenic
CTCCTAGGTATGGTCGGCCC+CGG 0.494830 2_2:-21629281 Msa0243900:three_prime_UTR
ATGGACAATACCATCATTGA+AGG 0.496388 2_2:-21633491 Msa0243900:CDS
AATGGATCTTCCTTCAATGA+TGG 0.496725 2_2:+21633481 None:intergenic
ATGGTACAAACTGTACTGAA+TGG 0.500357 2_2:-21633439 Msa0243900:CDS
CTCTATGTCTAAGATGCGCT+TGG 0.501048 2_2:+21632059 None:intergenic
CTGCCTTTAAAGCTAATATG+TGG 0.505807 2_2:-21629653 Msa0243900:three_prime_UTR
AATAAACTCGAGAAATCTAC+GGG 0.506867 2_2:-21629340 Msa0243900:three_prime_UTR
ACACTATTGCATATTGCTGC+AGG 0.507047 2_2:-21631997 Msa0243900:CDS
ATTTCAACTGTGATTGCTAC+CGG 0.507657 2_2:-21629866 Msa0243900:three_prime_UTR
GGAAATTGTTGACTTAATGT+TGG 0.507791 2_2:-21631857 Msa0243900:CDS
TTGTTGACTTAATGTTGGAT+AGG 0.510612 2_2:-21631852 Msa0243900:CDS
TAATAACGATCCAATCTCCT+AGG 0.511436 2_2:-21629296 Msa0243900:three_prime_UTR
AGATAGAGTACTCCAATAGT+AGG 0.512344 2_2:+21629451 None:intergenic
TAATAAACTCGAGAAATCTA+CGG 0.514087 2_2:-21629341 Msa0243900:three_prime_UTR
AATCCCATAATGACCAATCC+TGG 0.518539 2_2:-21630730 Msa0243900:intron
CATCAAATAGGGCATATAAA+GGG 0.524642 2_2:-21630360 Msa0243900:three_prime_UTR
ATAATTGTACAGACTAGTGC+TGG 0.525374 2_2:-21636221 Msa0243900:intron
TTCAAGTTGTCAAACGGCAA+AGG 0.526647 2_2:-21633201 Msa0243900:CDS
GTCAAACGGCAAAGGAAATG+TGG 0.527792 2_2:-21633193 Msa0243900:CDS
GGAAAATTAAGGGAAGAGTA+AGG 0.528254 2_2:+21638141 None:intergenic
AGAGCTGCTGCGGGTGCTTG+TGG 0.528314 2_2:+21633006 None:intergenic
GCCCTATTTGATGGACCAGA+TGG 0.528474 2_2:+21630370 None:intergenic
ACGCAACTAAAACGAGAAAG+AGG 0.529754 2_2:+21638208 None:intergenic
ACTCCTTCACAAAGTGGATG+TGG 0.531177 2_2:+21631968 None:intergenic
ATAAATGAAGGAGAGAAGAA+GGG 0.535615 2_2:+21638255 None:intergenic
TGGAGTACTCTATCTAAGCC+TGG 0.538215 2_2:-21629443 Msa0243900:three_prime_UTR
TGCTGCTGCAGCTGGAAACA+TGG 0.539534 2_2:-21631878 Msa0243900:CDS
GAGAATATTGAGATGAAACT+AGG 0.541523 2_2:+21629539 None:intergenic
TGAAATTAGCATGCAAGACT+CGG 0.543920 2_2:+21629883 None:intergenic
ACGATCCAATCTCCTAGGTA+TGG 0.547796 2_2:-21629291 Msa0243900:three_prime_UTR
ATTCAGTATGCTGCTTTGCA+AGG 0.548505 2_2:-21631784 Msa0243900:CDS
TGTGGTGATACTGGAGGTGT+AGG 0.552573 2_2:+21633024 None:intergenic
AGTACTGCTATTTGTTACAA+AGG 0.553032 2_2:+21629205 None:intergenic
GCATCAAATATTAGTTGAGA+AGG 0.553049 2_2:+21630522 None:intergenic
TCAATAACTCCTTCACAAAG+TGG 0.554262 2_2:+21631962 None:intergenic
TTAATGATTTCATTTAACTC+CGG 0.556416 2_2:+21630549 None:intergenic
TTTATGCCAAATCGGCCAAA+GGG 0.563656 2_2:-21638301 Msa0243900:five_prime_UTR
CCAGAGTCATCAGTACCACC+TGG 0.576963 2_2:+21629818 None:intergenic
TCAAAGCCACCATACTTCGA+TGG 0.580044 2_2:-21633458 Msa0243900:CDS
TTTACGTACTAGAGAAGTAG+TGG 0.582109 2_2:-21629409 Msa0243900:three_prime_UTR
TCCACATCCCATATCAAGCT+AGG 0.582284 2_2:+21630450 None:intergenic
TCCAATCTCCTAGGTATGGT+CGG 0.583065 2_2:-21629287 Msa0243900:three_prime_UTR
TACACATAGCTGTATTGCAT+CGG 0.583100 2_2:-21630407 Msa0243900:three_prime_UTR
TTCTTCGCTTGTATCTACAC+TGG 0.585964 2_2:-21631714 Msa0243900:three_prime_UTR
TGATGAAGATATGAAGAACA+TGG 0.592847 2_2:-21633288 Msa0243900:CDS
TAAATGAAGGAGAGAAGAAG+GGG 0.593492 2_2:+21638256 None:intergenic
AAAATGCTGCCATAACAAAT+GGG 0.593942 2_2:-21632026 Msa0243900:CDS
ATACTACCATGGTTCGACAT+TGG 0.601191 2_2:-21629564 Msa0243900:three_prime_UTR
TATCTCCGTAACAAGCATGA+TGG 0.602474 2_2:-21629615 Msa0243900:three_prime_UTR
GTGTCGTATAGAGCTGCTGC+GGG 0.603208 2_2:+21632997 None:intergenic
AGATTGAAATCATAAAGGAA+TGG 0.606429 2_2:+21638120 None:intergenic
CCAGGTGGTACTGATGACTC+TGG 0.607373 2_2:-21629818 Msa0243900:three_prime_UTR
TCAAACGGCAAAGGAAATGT+GGG 0.610564 2_2:-21633192 Msa0243900:CDS
AAATGAAGGAGAGAAGAAGG+GGG 0.618081 2_2:+21638257 None:intergenic
TAAGAGAAAACGCAGAGTCG+TGG 0.621726 2_2:-21629919 Msa0243900:three_prime_UTR
AGTGTCGTATAGAGCTGCTG+CGG 0.631974 2_2:+21632996 None:intergenic
ACAGATAAAGATGAGAAACT+CGG 0.632292 2_2:-21629987 Msa0243900:three_prime_UTR
ATCGCATTGCAAGATGTCAA+CGG 0.632830 2_2:-21631919 Msa0243900:CDS
GCAGCAATATGCAATAGTGT+AGG 0.635326 2_2:+21632000 None:intergenic
AAAACACTACTCATCAAAGC+CGG 0.635811 2_2:-21630568 Msa0243900:three_prime_UTR
TTCTTCATAGTATACTACCA+TGG 0.636479 2_2:-21629575 Msa0243900:three_prime_UTR
TTTGTACCATCGAAGTATGG+TGG 0.655271 2_2:+21633452 None:intergenic
ATCCGGGGCCGACCATACCT+AGG 0.658154 2_2:+21629279 None:intergenic
ATAAAGATGAGAAACTCGGA+AGG 0.662531 2_2:-21629983 Msa0243900:three_prime_UTR
AGTTGCAGCAGCAAACACTC+CGG 0.666075 2_2:+21629847 None:intergenic
CAATGACAACCAGAATCCAA+AGG 0.669131 2_2:+21630769 None:intergenic
AAACCACATCCACTTTGTGA+AGG 0.674610 2_2:-21631971 Msa0243900:CDS
ATGCTGCCATAACAAATGGG+TGG 0.675092 2_2:-21632023 Msa0243900:CDS
AGACAAGAAAATCAATATCG+CGG 0.681208 2_2:+21629718 None:intergenic
CTATGTACAAAAGTATTGGG+AGG 0.681529 2_2:+21629513 None:intergenic
TTCAGTACTTCACCAATCCG+GGG 0.688257 2_2:+21629264 None:intergenic
TAGGAACCAATGTCGAACCA+TGG 0.693129 2_2:+21629558 None:intergenic
GGTGCTTGTGGTGATACTGG+AGG 0.737175 2_2:+21633018 None:intergenic
GCTGCAACTACTTTACCAGG+TGG 0.760899 2_2:-21629833 Msa0243900:three_prime_UTR
GCTTGTGAATGGGAACACAA+AGG 0.763909 2_2:+21632109 None:intergenic
ATAAACTCGAGAAATCTACG+GGG 0.843172 2_2:-21629339 Msa0243900:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATATATTTTTTTTTTGA+AGG - chr2_2:21629359-21629378 Msa0243900:three_prime_UTR 10.0%
!! TAATATAAATATATACAGAA+TGG - chr2_2:21631375-21631394 Msa0243900:intron 10.0%
!!! GAATTTTGATATTAAAATAA+AGG - chr2_2:21631873-21631892 Msa0243900:CDS 10.0%
!!! TTTTGTTTTTTTTTGTTTTA+AGG + chr2_2:21632630-21632649 None:intergenic 10.0%
!!! TAATTAAGTTTTTTTTTTGA+GGG + chr2_2:21633258-21633277 None:intergenic 10.0%
!!! TTAATTAAGTTTTTTTTTTG+AGG + chr2_2:21633259-21633278 None:intergenic 10.0%
!!! ATTTTATGTGATTAAAAATA+GGG + chr2_2:21633282-21633301 None:intergenic 10.0%
!! TATGATAAAATATTATATAC+TGG + chr2_2:21633630-21633649 None:intergenic 10.0%
!!! ATTAAATTTTTTGGAATTTT+TGG + chr2_2:21634110-21634129 None:intergenic 10.0%
!! ATTCCAAAAAATTTAATAAA+TGG - chr2_2:21634113-21634132 Msa0243900:intron 10.0%
!!! TTGTATTTTATTTAATTTTG+TGG - chr2_2:21634926-21634945 Msa0243900:intron 10.0%
!! AAATATAAAATTTAATGCAA+GGG + chr2_2:21636757-21636776 None:intergenic 10.0%
!! AAAATATAAAATTTAATGCA+AGG + chr2_2:21636758-21636777 None:intergenic 10.0%
!!! TTTTTTAAATTCTTTTACAT+TGG - chr2_2:21636774-21636793 Msa0243900:intron 10.0%
!! TCAATAAAATGAATAAAAAA+GGG + chr2_2:21637274-21637293 None:intergenic 10.0%
!! TATATAAATAAAACTCTTAA+TGG - chr2_2:21637334-21637353 Msa0243900:intron 10.0%
!!! TTTTTGAAGGAAAAAAAAAA+TGG - chr2_2:21629372-21629391 Msa0243900:three_prime_UTR 15.0%
!!! TTTTGAAGGAAAAAAAAAAT+GGG - chr2_2:21629373-21629392 Msa0243900:three_prime_UTR 15.0%
!! AATTTATTGCTATAAAAATC+TGG - chr2_2:21629397-21629416 Msa0243900:three_prime_UTR 15.0%
!! ATTTATTGCTATAAAAATCT+GGG - chr2_2:21629398-21629417 Msa0243900:three_prime_UTR 15.0%
!! GTAATAAATATTATAAGTAC+AGG + chr2_2:21629431-21629450 None:intergenic 15.0%
!!! CTTAAAGTTTAGTTTTTATA+TGG + chr2_2:21629570-21629589 None:intergenic 15.0%
!! CAAATTATATAAAACTAGTA+TGG + chr2_2:21630073-21630092 None:intergenic 15.0%
!! AAAAAAAAGTTTGTCATAAA+TGG - chr2_2:21630149-21630168 Msa0243900:intron 15.0%
!!! GATATAAACTTTGTTTTTTA+AGG + chr2_2:21630576-21630595 None:intergenic 15.0%
!!! ATTATTTTCGAATATTTTAG+AGG + chr2_2:21630598-21630617 None:intergenic 15.0%
!! TATTCCATAATACAAAATTA+CGG - chr2_2:21630731-21630750 Msa0243900:three_prime_UTR 15.0%
!!! TTTTCCTTCAAAAAAAAATA+TGG + chr2_2:21631082-21631101 None:intergenic 15.0%
!!! TTTTGAAGGAAAAAAATATA+TGG - chr2_2:21631089-21631108 Msa0243900:intron 15.0%
!! TTTGAAGGAAAAAAATATAT+GGG - chr2_2:21631090-21631109 Msa0243900:intron 15.0%
!! AATTTATTGCTATAAAAATC+TGG - chr2_2:21629397-21629416 Msa0243900:three_prime_UTR 15.0%
!! ATTTATTGCTATAAAAATCT+GGG - chr2_2:21629398-21629417 Msa0243900:three_prime_UTR 15.0%
!! GTAATAAATAATATAAGTAC+AGG + chr2_2:21631148-21631167 None:intergenic 15.0%
!! TTATAAAGTCTTCAAATATA+TGG - chr2_2:21631449-21631468 Msa0243900:intron 15.0%
!! TTAAATGATATATGATTGAT+GGG - chr2_2:21631732-21631751 Msa0243900:three_prime_UTR 15.0%
!!! ATAACACAACTTTTATTTTA+GGG + chr2_2:21632069-21632088 None:intergenic 15.0%
!!! AATAACACAACTTTTATTTT+AGG + chr2_2:21632070-21632089 None:intergenic 15.0%
!!! TTTTTATATTTGTTTTTCAG+AGG - chr2_2:21632232-21632251 Msa0243900:intron 15.0%
!!! TTTTATATTTGTTTTTCAGA+GGG - chr2_2:21632233-21632252 Msa0243900:intron 15.0%
!!! AAATGTGATTTTATTTTGTA+GGG + chr2_2:21633025-21633044 None:intergenic 15.0%
!!! AAAATGTGATTTTATTTTGT+AGG + chr2_2:21633026-21633045 None:intergenic 15.0%
!!! CATTTTATGTGATTAAAAAT+AGG + chr2_2:21633283-21633302 None:intergenic 15.0%
!!! CATTTGTAATTTTGTAATAA+GGG + chr2_2:21633314-21633333 None:intergenic 15.0%
!!! GGTTTAAAATGTATTTTTAA+GGG + chr2_2:21633359-21633378 None:intergenic 15.0%
!!! AGGTTTAAAATGTATTTTTA+AGG + chr2_2:21633360-21633379 None:intergenic 15.0%
!!! AAGTTTAATAAAAGTACTAT+AGG + chr2_2:21633380-21633399 None:intergenic 15.0%
!! AAAAGAAAAAGTTATATTCT+TGG - chr2_2:21633454-21633473 Msa0243900:CDS 15.0%
!! GTAACACAATTAAAAAAATA+TGG - chr2_2:21633947-21633966 Msa0243900:intron 15.0%
!!! TGACCATTTATTAAATTTTT+TGG + chr2_2:21634119-21634138 None:intergenic 15.0%
!!! AAATATATATTTTCTTTGAC+AGG - chr2_2:21634386-21634405 Msa0243900:intron 15.0%
!!! AATATATATTTTCTTTGACA+GGG - chr2_2:21634387-21634406 Msa0243900:intron 15.0%
!! AAATTAATAGTAATCACATT+AGG - chr2_2:21634794-21634813 Msa0243900:intron 15.0%
!!! TAATTATATTAAAAGTGCAA+TGG + chr2_2:21634963-21634982 None:intergenic 15.0%
!!! AGGCAAATAATTTTTTTTTA+AGG - chr2_2:21636189-21636208 Msa0243900:five_prime_UTR 15.0%
!! CTCAATAAAATGAATAAAAA+AGG + chr2_2:21637275-21637294 None:intergenic 15.0%
!!! TAAGAGTTTTATTTATATAG+TGG + chr2_2:21637333-21637352 None:intergenic 15.0%
!! ATAAAGGAATGGAAAATTAA+GGG + chr2_2:21629329-21629348 None:intergenic 20.0%
!! TATTGAGATTGAAATCATAA+AGG + chr2_2:21629345-21629364 None:intergenic 20.0%
!! TACATAATTTCTTAAGGTTT+AGG + chr2_2:21629733-21629752 None:intergenic 20.0%
!! ACCTTAAGAAATTATGTATA+TGG - chr2_2:21629735-21629754 Msa0243900:three_prime_UTR 20.0%
!! TCCATATACATAATTTCTTA+AGG + chr2_2:21629739-21629758 None:intergenic 20.0%
!! ATGTATTATTCTCATTTATG+TGG + chr2_2:21629995-21630014 None:intergenic 20.0%
!! TTTCGTTGTAATTAAAACAT+TGG + chr2_2:21630024-21630043 None:intergenic 20.0%
!!! TTTAACTCAATAGTTTTGAT+TGG + chr2_2:21630100-21630119 None:intergenic 20.0%
!! TAAAAAGGAAAAATTACATG+TGG + chr2_2:21630217-21630236 None:intergenic 20.0%
!! CATATCAAGATCAAATAAAA+AGG + chr2_2:21630232-21630251 None:intergenic 20.0%
!! GATTCCATAATACAAAATTA+CGG - chr2_2:21630299-21630318 Msa0243900:three_prime_UTR 20.0%
!!! TTTACCGTAATTTTGTATTA+TGG + chr2_2:21630306-21630325 None:intergenic 20.0%
!! TGCATAGAAAGATATAATAA+TGG - chr2_2:21630356-21630375 Msa0243900:three_prime_UTR 20.0%
!! TAGAAAGATATAATAATGGT+CGG - chr2_2:21630360-21630379 Msa0243900:three_prime_UTR 20.0%
!!! TTTAAGGTTTCAATAACAAT+TGG + chr2_2:21630560-21630579 None:intergenic 20.0%
!!! TTTACCGTAATTTTGTATTA+TGG + chr2_2:21630306-21630325 None:intergenic 20.0%
!! TGCATAGAAAGATATAATAA+TGG - chr2_2:21630356-21630375 Msa0243900:three_prime_UTR 20.0%
!! TAGAAAGATATAATAATGGT+CGG - chr2_2:21630360-21630379 Msa0243900:three_prime_UTR 20.0%
!! TATTGAGATTGAAATCATAA+AGG + chr2_2:21629345-21629364 None:intergenic 20.0%
!! GTTAAATGATATATGATTGA+TGG - chr2_2:21631731-21631750 Msa0243900:three_prime_UTR 20.0%
!! TTAAAAATACACTTAAATCG+AGG + chr2_2:21631844-21631863 None:intergenic 20.0%
!!! AACTTAAAACTTTCTTTTCT+TGG + chr2_2:21631939-21631958 None:intergenic 20.0%
!! AATATAAAAAGTTTGATCTG+TGG + chr2_2:21632222-21632241 None:intergenic 20.0%
!! TAGAGTAAAGAAAATATCTA+TGG + chr2_2:21632493-21632512 None:intergenic 20.0%
!! TTTAGTATTATTCTTATCAG+TGG + chr2_2:21632523-21632542 None:intergenic 20.0%
!! AGAATACATTAATATTATGC+AGG - chr2_2:21632656-21632675 Msa0243900:intron 20.0%
!! GAATACATTAATATTATGCA+GGG - chr2_2:21632657-21632676 Msa0243900:intron 20.0%
!!! AATAAAGTGTTTGATTGTTA+AGG + chr2_2:21632757-21632776 None:intergenic 20.0%
!! AATTAACTGACAAATTAACT+TGG + chr2_2:21632826-21632845 None:intergenic 20.0%
!! TTAAGGGTTAATTAAGTAAA+TGG - chr2_2:21632967-21632986 Msa0243900:intron 20.0%
!! ACGAAATTCTGAATATTTAT+AGG + chr2_2:21632995-21633014 None:intergenic 20.0%
!!! AATGTGATTTTATTTTGTAG+GGG + chr2_2:21633024-21633043 None:intergenic 20.0%
!!! AAAATTTCCATCAACAATTT+TGG - chr2_2:21633121-21633140 Msa0243900:intron 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr2_2:21633181-21633200 Msa0243900:CDS 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr2_2:21633182-21633201 Msa0243900:CDS 20.0%
!! CAAAACTGTGAATATTTATA+GGG - chr2_2:21633213-21633232 Msa0243900:CDS 20.0%
!!! GCATTTGTAATTTTGTAATA+AGG + chr2_2:21633315-21633334 None:intergenic 20.0%
!! AGCAAAAACTATCAATAAAA+TGG + chr2_2:21633753-21633772 None:intergenic 20.0%
!! AGAACATCCAAAAATATATA+CGG - chr2_2:21634765-21634784 Msa0243900:intron 20.0%
!! GGAATTAATAACATTTGAAA+TGG - chr2_2:21635117-21635136 Msa0243900:intron 20.0%
!! CATATATAAATAGATGTGTT+CGG + chr2_2:21635253-21635272 None:intergenic 20.0%
!! AATTGTTGAAATCTTAATAG+TGG + chr2_2:21635982-21636001 None:intergenic 20.0%
!! ATTAATATTTGTTTGCGTTA+GGG + chr2_2:21636331-21636350 None:intergenic 20.0%
!! CTAATATAAGTTGTGTATTA+AGG + chr2_2:21636355-21636374 None:intergenic 20.0%
!!! AACTTATATTAGTTTCCTAT+TGG - chr2_2:21636363-21636382 Msa0243900:intron 20.0%
!! TTAATGATTTCATTTAACTC+CGG + chr2_2:21636911-21636930 None:intergenic 20.0%
!!! GTTTTATTTATATAGTGGAA+TGG + chr2_2:21637328-21637347 None:intergenic 20.0%
!! TTTGAATAAAACATCATTCT+TGG - chr2_2:21637674-21637693 Msa0243900:intron 20.0%
!! TACTCTTCTTGTAATATATA+TGG - chr2_2:21638271-21638290 Msa0243900:five_prime_UTR 20.0%
! AAGAAGATTGTGATAAATGA+AGG + chr2_2:21629217-21629236 None:intergenic 25.0%
! TTTGAAGAATTATTGCTGAT+TGG + chr2_2:21629285-21629304 None:intergenic 25.0%
! CATAAAGGAATGGAAAATTA+AGG + chr2_2:21629330-21629349 None:intergenic 25.0%
! AGATTGAAATCATAAAGGAA+TGG + chr2_2:21629340-21629359 None:intergenic 25.0%
! ACATCCAAAAACTAAAAAAC+CGG - chr2_2:21629607-21629626 Msa0243900:three_prime_UTR 25.0%
! CCAATGATGATATTATAACA+CGG + chr2_2:21629918-21629937 None:intergenic 25.0%
! ATTCTCAAATGTATGTATAG+AGG - chr2_2:21630277-21630296 Msa0243900:three_prime_UTR 25.0%
!!! CTAACTTTTTTATGCCAAAT+CGG - chr2_2:21630411-21630430 Msa0243900:three_prime_UTR 25.0%
! TCATACTTAGGAACAAAAAT+TGG + chr2_2:21630517-21630536 None:intergenic 25.0%
! TTTCAATAACAATTGGATAG+GGG + chr2_2:21630553-21630572 None:intergenic 25.0%
! GTTTCAATAACAATTGGATA+GGG + chr2_2:21630554-21630573 None:intergenic 25.0%
! TGGCATAAAAAAGTTAGAAA+TGG + chr2_2:21630408-21630427 None:intergenic 25.0%
!!! CTAACTTTTTTATGCCAAAT+CGG - chr2_2:21630411-21630430 Msa0243900:three_prime_UTR 25.0%
! AAGAAGATTGTGATAAATGA+AGG + chr2_2:21629217-21629236 None:intergenic 25.0%
! CATAAAGGAATGGAAAATTA+AGG + chr2_2:21629330-21629349 None:intergenic 25.0%
! AGATTGAAATCATAAAGGAA+TGG + chr2_2:21629340-21629359 None:intergenic 25.0%
! TTGCTTTAACATTTCTTTGT+CGG - chr2_2:21631300-21631319 Msa0243900:intron 25.0%
! CTAGTATAACCAAAAATTTG+CGG + chr2_2:21631346-21631365 None:intergenic 25.0%
! ATATTAGACACCAATCAAAA+TGG + chr2_2:21631412-21631431 None:intergenic 25.0%
!!! ATTTTGATTGGTGTCTAATA+TGG - chr2_2:21631411-21631430 Msa0243900:intron 25.0%
! CAAATATAGTAATCTCGTAT+TGG + chr2_2:21632007-21632026 None:intergenic 25.0%
! ATGAGATTCATATAAACTAG+AGG + chr2_2:21632278-21632297 None:intergenic 25.0%
! ACAATTCATATTCACTATGA+TGG - chr2_2:21632384-21632403 Msa0243900:intron 25.0%
!! AATTAACTTGGAAGAGTATA+TGG + chr2_2:21632814-21632833 None:intergenic 25.0%
!! ATGCTGATGGAAAATTTTAT+AGG + chr2_2:21633055-21633074 None:intergenic 25.0%
!! TGCTGATGGAAAATTTTTAT+AGG + chr2_2:21633085-21633104 None:intergenic 25.0%
!!! GTTGATGGAAATTTTTTACA+AGG + chr2_2:21633116-21633135 None:intergenic 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG + chr2_2:21633148-21633167 None:intergenic 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG + chr2_2:21633149-21633168 None:intergenic 25.0%
! GCAAAACTGTGAATATTTAT+AGG - chr2_2:21633212-21633231 Msa0243900:CDS 25.0%
!!! TAAGTTTTTTTTTTGAGGGA+GGG + chr2_2:21633254-21633273 None:intergenic 25.0%
!!! TTAAGTTTTTTTTTTGAGGG+AGG + chr2_2:21633255-21633274 None:intergenic 25.0%
! CAATAAAATGGAAGCAATTA+TGG + chr2_2:21633741-21633760 None:intergenic 25.0%
!!! GTTTTTGCTCTTTGAAAAAT+TGG - chr2_2:21633764-21633783 Msa0243900:intron 25.0%
!! ACAAATTAATTTGAGAGAGA+GGG + chr2_2:21634525-21634544 None:intergenic 25.0%
!! TACAAATTAATTTGAGAGAG+AGG + chr2_2:21634526-21634545 None:intergenic 25.0%
! ATTTCCCAATATTATGTTAC+CGG - chr2_2:21634603-21634622 Msa0243900:intron 25.0%
!! ATTAATAGGCTTTGTAGATT+TGG + chr2_2:21634637-21634656 None:intergenic 25.0%
!! TCTGGTTTCTATTCATTAAT+AGG + chr2_2:21634651-21634670 None:intergenic 25.0%
! CAAGAAAATATGTACTATGT+TGG - chr2_2:21634845-21634864 Msa0243900:intron 25.0%
! AATACAAAATCAAGTACGAA+TGG + chr2_2:21634913-21634932 None:intergenic 25.0%
!!! AAGGTGTTGTGTATTTTATA+TGG + chr2_2:21635030-21635049 None:intergenic 25.0%
!!! CAATTTTTTTATTTAGCCAG+TGG + chr2_2:21635060-21635079 None:intergenic 25.0%
!! CACTGGCTAAATAAAAAAAT+TGG - chr2_2:21635058-21635077 Msa0243900:intron 25.0%
! AGAAGAATAGATGAAATTTG+TGG - chr2_2:21635215-21635234 Msa0243900:intron 25.0%
!!! GTGAATTGAACTTTTGTTTT+AGG - chr2_2:21635298-21635317 Msa0243900:intron 25.0%
!! AAACTATTAGTCTCTAATGT+TGG + chr2_2:21635848-21635867 None:intergenic 25.0%
!!! AGAATTTTGAGTAGTTCATA+TGG - chr2_2:21636028-21636047 Msa0243900:intron 25.0%
! TATTAAAACTTGCACTTGAA+AGG + chr2_2:21636111-21636130 None:intergenic 25.0%
! AATTGTCTTCACAAATGAAA+CGG - chr2_2:21636133-21636152 Msa0243900:intron 25.0%
! TTAATATTTGTTTGCGTTAG+GGG + chr2_2:21636330-21636349 None:intergenic 25.0%
! CATTAATATTTGTTTGCGTT+AGG + chr2_2:21636332-21636351 None:intergenic 25.0%
! CAAATTCATTATAGCTGAAA+CGG + chr2_2:21636417-21636436 None:intergenic 25.0%
! TTTCAGCTATAATGAATTTG+AGG - chr2_2:21636417-21636436 Msa0243900:intron 25.0%
! GTCTCTAAACTTCTATTTAA+AGG - chr2_2:21636439-21636458 Msa0243900:intron 25.0%
! TCTAAACTTCTATTTAAAGG+TGG - chr2_2:21636442-21636461 Msa0243900:intron 25.0%
! TCCAATTGGTTAAATTTCTT+TGG - chr2_2:21636852-21636871 Msa0243900:intron 25.0%
! TCCAAAGAAATTTAACCAAT+TGG + chr2_2:21636856-21636875 None:intergenic 25.0%
!!! GATGTTTTATTCAAATAGTG+TGG + chr2_2:21637669-21637688 None:intergenic 25.0%
!!! AATCCACATATTAGCTTTAA+AGG + chr2_2:21637810-21637829 None:intergenic 25.0%
!! TTTAAAGCTAATATGTGGAT+TGG - chr2_2:21637809-21637828 Msa0243900:intron 25.0%
!!! AACCTATGTACAAAAGTATT+GGG + chr2_2:21637950-21637969 None:intergenic 25.0%
!! AAACCTATGTACAAAAGTAT+TGG + chr2_2:21637951-21637970 None:intergenic 25.0%
! TAATAAACTCGAGAAATCTA+CGG - chr2_2:21638116-21638135 Msa0243900:intron 25.0%
ATAAATGAAGGAGAGAAGAA+GGG + chr2_2:21629205-21629224 None:intergenic 30.0%
ATAATTGTAGAGACAAGTGT+AGG - chr2_2:21629519-21629538 Msa0243900:three_prime_UTR 30.0%
GTGTAGGAGAAAAAAACATA+TGG - chr2_2:21629535-21629554 Msa0243900:three_prime_UTR 30.0%
!!! TCAACCGGTTTTTTAGTTTT+TGG + chr2_2:21629614-21629633 None:intergenic 30.0%
ATCACAATATTGCTATCAAC+CGG + chr2_2:21629629-21629648 None:intergenic 30.0%
! TTAAGGTTTAGGTTAAGATG+TGG + chr2_2:21629722-21629741 None:intergenic 30.0%
CCGTGTTATAATATCATCAT+TGG - chr2_2:21629915-21629934 Msa0243900:three_prime_UTR 30.0%
AATATCATCATTGGACCTTA+TGG - chr2_2:21629924-21629943 Msa0243900:three_prime_UTR 30.0%
GAAAAATTACATGTGGCAAA+TGG + chr2_2:21630210-21630229 None:intergenic 30.0%
ACAAAATGAAACAATCCACA+TGG + chr2_2:21630255-21630274 None:intergenic 30.0%
!!! CTAACTTTTTTATGCCGATT+TGG + chr2_2:21630428-21630447 None:intergenic 30.0%
CAAATCGGCATAAAAAAGTT+AGG - chr2_2:21630426-21630445 Msa0243900:three_prime_UTR 30.0%
GGAACAAAAATTGGTTGAAA+AGG + chr2_2:21630508-21630527 None:intergenic 30.0%
GGTTTCAATAACAATTGGAT+AGG + chr2_2:21630555-21630574 None:intergenic 30.0%
!!! GCAAAGATGCTTTTTTTTAG+TGG - chr2_2:21630688-21630707 Msa0243900:intron 30.0%
ATAAATGAAGGAGAGAAGAA+GGG + chr2_2:21629205-21629224 None:intergenic 30.0%
TTTGAAGAATTATTGCTGGT+TGG + chr2_2:21630980-21630999 None:intergenic 30.0%
TGAGTTTGAAGAATTATTGC+TGG + chr2_2:21629289-21629308 None:intergenic 30.0%
CCACACAAACGAATTATAAA+CGG + chr2_2:21631057-21631076 None:intergenic 30.0%
!!! GGTGCCATATTTTTTTTTGA+AGG - chr2_2:21631075-21631094 Msa0243900:intron 30.0%
TGCTTTAACATTTCTTTGTC+GGG - chr2_2:21631301-21631320 Msa0243900:intron 30.0%
! AAATCTTAGCCGCAAATTTT+TGG - chr2_2:21631334-21631353 Msa0243900:intron 30.0%
! TTTTTACTGTTTAAGCCACA+CGG - chr2_2:21631579-21631598 Msa0243900:intron 30.0%
TTATGTTAACCGATACTCTT+AGG - chr2_2:21631897-21631916 Msa0243900:CDS 30.0%
! AATCATTGTCCTAAGAGTAT+CGG + chr2_2:21631909-21631928 None:intergenic 30.0%
TTTCAGCTTACTACATAACT+CGG - chr2_2:21632338-21632357 Msa0243900:intron 30.0%
ATCCACTAAAAAGGAATCAT+AGG - chr2_2:21632697-21632716 Msa0243900:intron 30.0%
GAGACAAATTAATTACTCCA+AGG + chr2_2:21632727-21632746 None:intergenic 30.0%
TATAGGACTAAAAATGCTGA+TGG + chr2_2:21633068-21633087 None:intergenic 30.0%
!! TTGGCTTTTGCTAAAAACAA+AGG - chr2_2:21633473-21633492 Msa0243900:CDS 30.0%
! GTTTGTTGAGCGAATAAAAT+TGG + chr2_2:21633548-21633567 None:intergenic 30.0%
TTGATCCATGAGTAATTTAC+TGG - chr2_2:21633672-21633691 Msa0243900:intron 30.0%
TACAAAACTTAGACTTAACG+AGG - chr2_2:21633904-21633923 Msa0243900:intron 30.0%
AATCAGTTGACTACAAACTT+TGG - chr2_2:21634066-21634085 Msa0243900:intron 30.0%
!! CTTTGGCTTGTGATTAAAAA+TGG - chr2_2:21634083-21634102 Msa0243900:intron 30.0%
TGATGAAGATATGAAGAACA+TGG - chr2_2:21634169-21634188 Msa0243900:intron 30.0%
CTTAAGATCATCTGGATTTA+TGG + chr2_2:21634231-21634250 None:intergenic 30.0%
GAAATTCTCTTAAGATCATC+TGG + chr2_2:21634239-21634258 None:intergenic 30.0%
!! GAGAATTTCAAGTTGTCAAA+CGG - chr2_2:21634250-21634269 Msa0243900:intron 30.0%
!! TCCTAATCTTGAGTTTTTAG+AGG - chr2_2:21634483-21634502 Msa0243900:intron 30.0%
! TCCTCTAAAAACTCAAGATT+AGG + chr2_2:21634487-21634506 None:intergenic 30.0%
! GAAATCAATTTTGCAGAACA+TGG + chr2_2:21634588-21634607 None:intergenic 30.0%
TAATCACATTAGGACAGAAA+TGG - chr2_2:21634804-21634823 Msa0243900:intron 30.0%
AATCACATTAGGACAGAAAT+GGG - chr2_2:21634805-21634824 Msa0243900:intron 30.0%
!!! CATTTTTTGTGAAAATGACC+CGG + chr2_2:21634875-21634894 None:intergenic 30.0%
AACAAAGACATTATCAGAGT+TGG + chr2_2:21635097-21635116 None:intergenic 30.0%
! AACTCTGATAATGTCTTTGT+TGG - chr2_2:21635096-21635115 Msa0243900:intron 30.0%
TATATGCTGGAACTTAACTT+TGG - chr2_2:21635146-21635165 Msa0243900:intron 30.0%
TAGATGAAATTTGTGGATGA+TGG - chr2_2:21635222-21635241 Msa0243900:intron 30.0%
AAAAATGCTGCCATAACAAA+TGG - chr2_2:21635430-21635449 Msa0243900:intron 30.0%
AAAATGCTGCCATAACAAAT+GGG - chr2_2:21635431-21635450 Msa0243900:intron 30.0%
!! GGAAATTGTTGACTTAATGT+TGG - chr2_2:21635600-21635619 Msa0243900:intron 30.0%
!! TTGTTGACTTAATGTTGGAT+AGG - chr2_2:21635605-21635624 Msa0243900:intron 30.0%
TTTCTAACTAGTCCCTAAAT+CGG + chr2_2:21635941-21635960 None:intergenic 30.0%
! TCTTAATAGTGGTCGATTTA+GGG + chr2_2:21635971-21635990 None:intergenic 30.0%
! ATCTTAATAGTGGTCGATTT+AGG + chr2_2:21635972-21635991 None:intergenic 30.0%
CAACAATTTGATCACTAAAC+CGG - chr2_2:21635994-21636013 Msa0243900:intron 30.0%
AACAATTTGATCACTAAACC+GGG - chr2_2:21635995-21636014 Msa0243900:intron 30.0%
AAAATTCTATAGTTAGAGCC+CGG + chr2_2:21636016-21636035 None:intergenic 30.0%
AGTAGTTCATATGGTCTATT+CGG - chr2_2:21636037-21636056 Msa0243900:intron 30.0%
TAATATTTGTTTGCGTTAGG+GGG + chr2_2:21636329-21636348 None:intergenic 30.0%
! TTTTTGCAAATGAGAAGTTC+TGG + chr2_2:21636539-21636558 None:intergenic 30.0%
!! CCTATCTCTTACCATTTTTA+AGG + chr2_2:21636599-21636618 None:intergenic 30.0%
CCTTAAAAATGGTAAGAGAT+AGG - chr2_2:21636596-21636615 Msa0243900:intron 30.0%
! GTAACCATATTTTGTATTGC+AGG - chr2_2:21636809-21636828 Msa0243900:intron 30.0%
!! AAATCACGTTGTTTTCCAAT+TGG - chr2_2:21636838-21636857 Msa0243900:intron 30.0%
GCATCAAATATTAGTTGAGA+AGG + chr2_2:21636938-21636957 None:intergenic 30.0%
TGTTTATCCTAGCTTGATAT+GGG - chr2_2:21637000-21637019 Msa0243900:intron 30.0%
CATCAAATAGGGCATATAAA+GGG - chr2_2:21637097-21637116 Msa0243900:intron 30.0%
! TTATATTGCTATTGAGACAG+TGG + chr2_2:21637372-21637391 None:intergenic 30.0%
ACAGATAAAGATGAGAAACT+CGG - chr2_2:21637470-21637489 Msa0243900:intron 30.0%
AGACAAGAAAATCAATATCG+CGG + chr2_2:21637742-21637761 None:intergenic 30.0%
TTCTTCATAGTATACTACCA+TGG - chr2_2:21637882-21637901 Msa0243900:intron 30.0%
GAGAATATTGAGATGAAACT+AGG + chr2_2:21637921-21637940 None:intergenic 30.0%
TCATTTACTCAACCTACTAT+TGG - chr2_2:21637994-21638013 Msa0243900:intron 30.0%
!! ACGTAAATCATATTTTTGCC+AGG + chr2_2:21638035-21638054 None:intergenic 30.0%
AATAAACTCGAGAAATCTAC+GGG - chr2_2:21638117-21638136 Msa0243900:intron 30.0%
AGAGAAGAATGCATGAAAAA+GGG + chr2_2:21638223-21638242 None:intergenic 30.0%
AAGAGAAGAATGCATGAAAA+AGG + chr2_2:21638224-21638243 None:intergenic 30.0%
! AGTACTGCTATTTGTTACAA+AGG + chr2_2:21638255-21638274 None:intergenic 30.0%
TAAATGAAGGAGAGAAGAAG+GGG + chr2_2:21629204-21629223 None:intergenic 35.0%
GATAAATGAAGGAGAGAAGA+AGG + chr2_2:21629206-21629225 None:intergenic 35.0%
GGAAAATTAAGGGAAGAGTA+AGG + chr2_2:21629319-21629338 None:intergenic 35.0%
GAGATGATCAAACTCAATGT+AGG + chr2_2:21629663-21629682 None:intergenic 35.0%
TGTGAGCTAAAGTTTCACAT+TGG + chr2_2:21629801-21629820 None:intergenic 35.0%
TTTGATCTTGATATGCCATG+TGG - chr2_2:21630237-21630256 Msa0243900:three_prime_UTR 35.0%
TCGGCATAAAAAAGTTAGGA+AGG - chr2_2:21630430-21630449 Msa0243900:three_prime_UTR 35.0%
TTCTTGGCTCATACTTAGTT+AGG + chr2_2:21630464-21630483 None:intergenic 35.0%
CTACCTTATGGTTCAATTCT+TGG + chr2_2:21630480-21630499 None:intergenic 35.0%
CAAGAATTGAACCATAAGGT+AGG - chr2_2:21630478-21630497 Msa0243900:three_prime_UTR 35.0%
GAAAAGGAAAACCTACCTTA+TGG + chr2_2:21630492-21630511 None:intergenic 35.0%
TCAATTCTTGGCTCATACTT+AGG + chr2_2:21630468-21630487 None:intergenic 35.0%
TAAATGAAGGAGAGAAGAAG+GGG + chr2_2:21629204-21629223 None:intergenic 35.0%
GATAAATGAAGGAGAGAAGA+AGG + chr2_2:21629206-21629225 None:intergenic 35.0%
CCGTTTATAATTCGTTTGTG+TGG - chr2_2:21631054-21631073 Msa0243900:intron 35.0%
ATAATTGTACAGACTAGTGC+TGG - chr2_2:21631236-21631255 Msa0243900:intron 35.0%
AATGTTAAAGCAACCATACC+TGG + chr2_2:21631293-21631312 None:intergenic 35.0%
AGACACCAATCAAAATGGTA+CGG + chr2_2:21631407-21631426 None:intergenic 35.0%
AACATTACACAAGTGCAATC+TGG - chr2_2:21631791-21631810 Msa0243900:CDS 35.0%
AATCAGTACTCTCATGACAA+TGG + chr2_2:21632039-21632058 None:intergenic 35.0%
TAATGGGACATCCACTAAAA+AGG - chr2_2:21632688-21632707 Msa0243900:intron 35.0%
! CACCTATGATTCCTTTTTAG+TGG + chr2_2:21632702-21632721 None:intergenic 35.0%
CACTAAAAAGGAATCATAGG+TGG - chr2_2:21632700-21632719 Msa0243900:intron 35.0%
ACAAGGACTAAAAATGCTGA+TGG + chr2_2:21633099-21633118 None:intergenic 35.0%
TTAGGGACCAAAATTGTTGA+TGG + chr2_2:21633131-21633150 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTTA+AGG - chr2_2:21633139-21633158 Msa0243900:intron 35.0%
ATGCTTAAGGAAAATGTCAC+AGG - chr2_2:21633152-21633171 Msa0243900:intron 35.0%
TGCTTAAGGAAAATGTCACA+GGG - chr2_2:21633153-21633172 Msa0243900:intron 35.0%
TATGTCGATGCTTAACTCAA+GGG + chr2_2:21633703-21633722 None:intergenic 35.0%
TTATGTCGATGCTTAACTCA+AGG + chr2_2:21633704-21633723 None:intergenic 35.0%
ATTGTGTTACCTGCAAATGA+TGG + chr2_2:21633937-21633956 None:intergenic 35.0%
ATGGACAATACCATCATTGA+AGG - chr2_2:21633966-21633985 Msa0243900:intron 35.0%
AATGGATCTTCCTTCAATGA+TGG + chr2_2:21633979-21633998 None:intergenic 35.0%
ATGGTACAAACTGTACTGAA+TGG - chr2_2:21634018-21634037 Msa0243900:intron 35.0%
!! CTTGAGTTTTTAGAGGAAAC+AGG - chr2_2:21634490-21634509 Msa0243900:intron 35.0%
!! GTTTTTAGAGGAAACAGGTA+TGG - chr2_2:21634495-21634514 Msa0243900:intron 35.0%
! ATCAATTTTGCAGAACATGG+TGG + chr2_2:21634585-21634604 None:intergenic 35.0%
GTGTCCGGTAACATAATATT+GGG + chr2_2:21634610-21634629 None:intergenic 35.0%
AATATTATGTTACCGGACAC+CGG - chr2_2:21634610-21634629 Msa0243900:intron 35.0%
! TGAGACGCCGTATATATTTT+TGG + chr2_2:21634775-21634794 None:intergenic 35.0%
CAAAATCAAGTACGAATGGT+GGG + chr2_2:21634909-21634928 None:intergenic 35.0%
ACAAAATCAAGTACGAATGG+TGG + chr2_2:21634910-21634929 None:intergenic 35.0%
ATCAAGAAGCTTAAGATGCA+AGG - chr2_2:21635000-21635019 Msa0243900:intron 35.0%
TCAAGAAGCTTAAGATGCAA+GGG - chr2_2:21635001-21635020 Msa0243900:intron 35.0%
AAAGACATTATCAGAGTTGG+AGG + chr2_2:21635094-21635113 None:intergenic 35.0%
GAAATGGCTTCTTTATATGC+TGG - chr2_2:21635133-21635152 Msa0243900:intron 35.0%
! TTTAGAGCATGCTTGTGAAT+GGG + chr2_2:21635361-21635380 None:intergenic 35.0%
! ATTTAGAGCATGCTTGTGAA+TGG + chr2_2:21635362-21635381 None:intergenic 35.0%
! ATTCACAAGCATGCTCTAAA+TGG - chr2_2:21635361-21635380 Msa0243900:intron 35.0%
TCAATAACTCCTTCACAAAG+TGG + chr2_2:21635498-21635517 None:intergenic 35.0%
!!! ATGACATCGTTTTGAAGATG+AGG - chr2_2:21635706-21635725 Msa0243900:intron 35.0%
! ACTAATTGAGAGACCGATTT+AGG - chr2_2:21635925-21635944 Msa0243900:intron 35.0%
! CTAATTGAGAGACCGATTTA+GGG - chr2_2:21635926-21635945 Msa0243900:intron 35.0%
!!! CTTGTTTTTTAACCCTTCTC+CGG + chr2_2:21636171-21636190 None:intergenic 35.0%
AACGCAGACAAAAGAGTAAA+GGG + chr2_2:21636250-21636269 None:intergenic 35.0%
AAACGCAGACAAAAGAGTAA+AGG + chr2_2:21636251-21636270 None:intergenic 35.0%
TGAGCTAAATGTTAAGGAGT+TGG + chr2_2:21636287-21636306 None:intergenic 35.0%
! CTGGTTTGAGCTAAATGTTA+AGG + chr2_2:21636293-21636312 None:intergenic 35.0%
! TATGAGCGATTTTCCATCAT+CGG - chr2_2:21636487-21636506 Msa0243900:intron 35.0%
GAAATATCCCATGTTGTCTA+TGG + chr2_2:21636517-21636536 None:intergenic 35.0%
! TTTAAGGCTAAGTCTGCAAT+TGG + chr2_2:21636583-21636602 None:intergenic 35.0%
!! TGCAGACTTAGCCTTAAAAA+TGG - chr2_2:21636585-21636604 Msa0243900:intron 35.0%
ATGGGATTATGATCATGTTC+AGG + chr2_2:21636715-21636734 None:intergenic 35.0%
!! TTACCAGGATTGGTCATTAT+GGG + chr2_2:21636733-21636752 None:intergenic 35.0%
!! TTTACCAGGATTGGTCATTA+TGG + chr2_2:21636734-21636753 None:intergenic 35.0%
ATTTAATGCAAGGGTTTACC+AGG + chr2_2:21636748-21636767 None:intergenic 35.0%
CATGCCTGCAATACAAAATA+TGG + chr2_2:21636816-21636835 None:intergenic 35.0%
!!! GTAGTGTTTTTCAAGAATCG+TGG + chr2_2:21636879-21636898 None:intergenic 35.0%
AAAACACTACTCATCAAAGC+CGG - chr2_2:21636889-21636908 Msa0243900:intron 35.0%
ATATTTGATGCTGCAGAAGT+TGG - chr2_2:21636947-21636966 Msa0243900:intron 35.0%
GTGTTTATCCTAGCTTGATA+TGG - chr2_2:21636999-21637018 Msa0243900:intron 35.0%
TACACATAGCTGTATTGCAT+CGG - chr2_2:21637050-21637069 Msa0243900:intron 35.0%
CCTTTATATGCCCTATTTGA+TGG + chr2_2:21637099-21637118 None:intergenic 35.0%
CCATCAAATAGGGCATATAA+AGG - chr2_2:21637096-21637115 Msa0243900:intron 35.0%
CAGAAACACTTTATTGCACT+TGG - chr2_2:21637150-21637169 Msa0243900:intron 35.0%
! AGTCAACTTGAATTGGTTTC+TGG - chr2_2:21637193-21637212 Msa0243900:intron 35.0%
! TATAGTGGAATGGATAAGTG+TGG + chr2_2:21637318-21637337 None:intergenic 35.0%
TTTCTCATCTTTATCTGTGC+AGG + chr2_2:21637468-21637487 None:intergenic 35.0%
ATAAAGATGAGAAACTCGGA+AGG - chr2_2:21637474-21637493 Msa0243900:intron 35.0%
TGAAATTAGCATGCAAGACT+CGG + chr2_2:21637577-21637596 None:intergenic 35.0%
ATTTCAACTGTGATTGCTAC+CGG - chr2_2:21637591-21637610 Msa0243900:intron 35.0%
!! CTGCCTTTAAAGCTAATATG+TGG - chr2_2:21637804-21637823 Msa0243900:intron 35.0%
!! CTATGTACAAAAGTATTGGG+AGG + chr2_2:21637947-21637966 None:intergenic 35.0%
! CTCCCAATACTTTTGTACAT+AGG - chr2_2:21637945-21637964 Msa0243900:intron 35.0%
! AGATAGAGTACTCCAATAGT+AGG + chr2_2:21638009-21638028 None:intergenic 35.0%
TTTACGTACTAGAGAAGTAG+TGG - chr2_2:21638048-21638067 Msa0243900:intron 35.0%
ATAAACTCGAGAAATCTACG+GGG - chr2_2:21638118-21638137 Msa0243900:intron 35.0%
TAATAACGATCCAATCTCCT+AGG - chr2_2:21638161-21638180 Msa0243900:five_prime_UTR 35.0%
! TTTTATGCCAAATCGGCCAA+AGG - chr2_2:21629155-21629174 Msa0243900:three_prime_UTR 40.0%
TTTATGCCAAATCGGCCAAA+GGG - chr2_2:21629156-21629175 Msa0243900:three_prime_UTR 40.0%
AAATGAAGGAGAGAAGAAGG+GGG + chr2_2:21629203-21629222 None:intergenic 40.0%
ACGCAACTAAAACGAGAAAG+AGG + chr2_2:21629252-21629271 None:intergenic 40.0%
TGAATCCCAGTGACAAATGT+CGG + chr2_2:21629869-21629888 None:intergenic 40.0%
! GACTTTGCGAATGAAGCATT+GGG + chr2_2:21629892-21629911 None:intergenic 40.0%
GAGTAGATTAACACCAGTGT+TGG + chr2_2:21629956-21629975 None:intergenic 40.0%
TGGCTCATACTTAGTTAGGA+AGG + chr2_2:21630460-21630479 None:intergenic 40.0%
GAGCCAAGAATTGAACCATA+AGG - chr2_2:21630474-21630493 Msa0243900:three_prime_UTR 40.0%
TTGGATAGGGGTTCAATTCT+TGG + chr2_2:21630541-21630560 None:intergenic 40.0%
! TTTTATGCCAAATCGGCCAA+AGG - chr2_2:21629155-21629174 Msa0243900:three_prime_UTR 40.0%
TTTATGCCAAATCGGCCAAA+GGG - chr2_2:21629156-21629175 Msa0243900:three_prime_UTR 40.0%
GGAAAAATTGTGCTTCCCTT+TGG + chr2_2:21630869-21630888 None:intergenic 40.0%
AAATGAAGGAGAGAAGAAGG+GGG + chr2_2:21629203-21629222 None:intergenic 40.0%
ACGCAACTAAAACGAGAAAG+AGG + chr2_2:21629252-21629271 None:intergenic 40.0%
CCTGGAGGAAATACGATAAA+AGG + chr2_2:21631275-21631294 None:intergenic 40.0%
! CCTTTTATCGTATTTCCTCC+AGG - chr2_2:21631272-21631291 Msa0243900:intron 40.0%
TATCGTATTTCCTCCAGGTA+TGG - chr2_2:21631277-21631296 Msa0243900:intron 40.0%
ACCAATCAAAATGGTACGGT+GGG + chr2_2:21631403-21631422 None:intergenic 40.0%
TATGCAGGGAGACATGTTAA+TGG - chr2_2:21632671-21632690 Msa0243900:intron 40.0%
ATGCAGGGAGACATGTTAAT+GGG - chr2_2:21632672-21632691 Msa0243900:intron 40.0%
ATGGAAGCAATTATGGTGCT+AGG + chr2_2:21633734-21633753 None:intergenic 40.0%
GCAATGATCAGTCCATGTAA+GGG - chr2_2:21633786-21633805 Msa0243900:intron 40.0%
CAATGATCAGTCCATGTAAG+GGG - chr2_2:21633787-21633806 Msa0243900:intron 40.0%
AATGATCAGTCCATGTAAGG+GGG - chr2_2:21633788-21633807 Msa0243900:intron 40.0%
GGAAACATACCATCATTTGC+AGG - chr2_2:21633925-21633944 Msa0243900:intron 40.0%
!! GAAGTATGGTGGCTTTGAAA+TGG + chr2_2:21633997-21634016 None:intergenic 40.0%
TTTGTACCATCGAAGTATGG+TGG + chr2_2:21634008-21634027 None:intergenic 40.0%
CAGTTTGTACCATCGAAGTA+TGG + chr2_2:21634011-21634030 None:intergenic 40.0%
!! TTCAAGTTGTCAAACGGCAA+AGG - chr2_2:21634256-21634275 Msa0243900:intron 40.0%
TCAAACGGCAAAGGAAATGT+GGG - chr2_2:21634265-21634284 Msa0243900:intron 40.0%
GGTGTCCGGTAACATAATAT+TGG + chr2_2:21634611-21634630 None:intergenic 40.0%
! TAGGCTTTGTAGATTTGGAC+CGG + chr2_2:21634632-21634651 None:intergenic 40.0%
GAGACATAGAAGAACTCTTC+TGG + chr2_2:21634669-21634688 None:intergenic 40.0%
!! TATGTACTATGTTGGCTCAC+CGG - chr2_2:21634853-21634872 Msa0243900:intron 40.0%
! AGCATGCTCTAAATGGAAAC+TGG - chr2_2:21635368-21635387 Msa0243900:intron 40.0%
GCAGCAATATGCAATAGTGT+AGG + chr2_2:21635460-21635479 None:intergenic 40.0%
ACACTATTGCATATTGCTGC+AGG - chr2_2:21635460-21635479 Msa0243900:intron 40.0%
AAACCACATCCACTTTGTGA+AGG - chr2_2:21635486-21635505 Msa0243900:intron 40.0%
ATCGCATTGCAAGATGTCAA+CGG - chr2_2:21635538-21635557 Msa0243900:intron 40.0%
ACCCACTGTTACCTGTAAAA+AGG - chr2_2:21635629-21635648 Msa0243900:intron 40.0%
! CCCTTTTTACAGGTAACAGT+GGG + chr2_2:21635633-21635652 None:intergenic 40.0%
CCCACTGTTACCTGTAAAAA+GGG - chr2_2:21635630-21635649 Msa0243900:intron 40.0%
CCACTGTTACCTGTAAAAAG+GGG - chr2_2:21635631-21635650 Msa0243900:intron 40.0%
TGCAAAGCAGCATACTGAAT+AGG + chr2_2:21635673-21635692 None:intergenic 40.0%
!! ATTCAGTATGCTGCTTTGCA+AGG - chr2_2:21635673-21635692 Msa0243900:intron 40.0%
!!! ATCGTTTTGAAGATGAGGAC+TGG - chr2_2:21635711-21635730 Msa0243900:intron 40.0%
!!! TCGTTTTGAAGATGAGGACT+GGG - chr2_2:21635712-21635731 Msa0243900:intron 40.0%
TTCTTCGCTTGTATCTACAC+TGG - chr2_2:21635743-21635762 Msa0243900:intron 40.0%
TGTATCTACACTGGCATCTA+TGG - chr2_2:21635752-21635771 Msa0243900:intron 40.0%
GGTGACAATGCTTACGAAAA+AGG - chr2_2:21636058-21636077 Msa0243900:intron 40.0%
CGGAGAAGGGTTAAAAAACA+AGG - chr2_2:21636169-21636188 Msa0243900:intron 40.0%
GCTAAATGTTAAGGAGTTGG+AGG + chr2_2:21636284-21636303 None:intergenic 40.0%
GTTGATTGGACAAAGCCAAT+AGG + chr2_2:21636381-21636400 None:intergenic 40.0%
!! GTGATCAAATCGGTGTTGAT+TGG + chr2_2:21636395-21636414 None:intergenic 40.0%
AGCTGAAACGGTGATCAAAT+CGG + chr2_2:21636405-21636424 None:intergenic 40.0%
ATATCCCATGTTGTCTATGG+TGG + chr2_2:21636514-21636533 None:intergenic 40.0%
AATCGAATGCCTTTGGATTC+TGG - chr2_2:21636679-21636698 Msa0243900:intron 40.0%
CAATGACAACCAGAATCCAA+AGG + chr2_2:21636691-21636710 None:intergenic 40.0%
AATCCCATAATGACCAATCC+TGG - chr2_2:21636727-21636746 Msa0243900:intron 40.0%
! GCTGCAGAAGTTGGAAATTT+TGG - chr2_2:21636956-21636975 Msa0243900:intron 40.0%
GCATGCTAGTATATTCCATC+TGG - chr2_2:21637072-21637091 Msa0243900:intron 40.0%
TTCCATCTGGTCCATCAAAT+AGG - chr2_2:21637085-21637104 Msa0243900:intron 40.0%
TCCATCTGGTCCATCAAATA+GGG - chr2_2:21637086-21637105 Msa0243900:intron 40.0%
ACCACGAAGTCAACTTGAAT+TGG - chr2_2:21637186-21637205 Msa0243900:intron 40.0%
!! ACCAATTCAAGTTGACTTCG+TGG + chr2_2:21637190-21637209 None:intergenic 40.0%
AAATGTGCGTCGAGTTACTA+TGG - chr2_2:21637227-21637246 Msa0243900:intron 40.0%
TCTATTCTTGTCTCGCGTTA+TGG - chr2_2:21637759-21637778 Msa0243900:intron 40.0%
TATCTCCGTAACAAGCATGA+TGG - chr2_2:21637842-21637861 Msa0243900:intron 40.0%
! TGCTACCATCATGCTTGTTA+CGG + chr2_2:21637850-21637869 None:intergenic 40.0%
ATACTACCATGGTTCGACAT+TGG - chr2_2:21637893-21637912 Msa0243900:intron 40.0%
ACTTCAGTACTTCACCAATC+CGG + chr2_2:21638198-21638217 None:intergenic 40.0%
GGAAAAATGGTGCTTCCCTT+TGG + chr2_2:21629174-21629193 None:intergenic 45.0%
AAGGGGGTAGTGTGGAAAAA+TGG + chr2_2:21629187-21629206 None:intergenic 45.0%
CGACTTTGCGAATGAAGCAT+TGG + chr2_2:21629893-21629912 None:intergenic 45.0%
!! CAGTGTTGGCTCTTTCCATA+AGG + chr2_2:21629942-21629961 None:intergenic 45.0%
CTTATGGAAAGAGCCAACAC+TGG - chr2_2:21629940-21629959 Msa0243900:three_prime_UTR 45.0%
GTTAAAGCAACCATACCTGG+AGG + chr2_2:21631290-21631309 None:intergenic 45.0%
!! TCCCACCGTACCATTTTGAT+TGG - chr2_2:21631399-21631418 Msa0243900:intron 45.0%
CACCAATCAAAATGGTACGG+TGG + chr2_2:21631404-21631423 None:intergenic 45.0%
GTCAGAACTAGCAGAATCGA+AGG + chr2_2:21631525-21631544 None:intergenic 45.0%
!! CTGCTAGTTCTGACTTCTGA+TGG - chr2_2:21631531-21631550 Msa0243900:intron 45.0%
GTTCTGACTTCTGATGGCTA+AGG - chr2_2:21631537-21631556 Msa0243900:intron 45.0%
TAAGTTCGCAGTACTTTGCG+TGG + chr2_2:21631648-21631667 None:intergenic 45.0%
AAGGAATCATAGGTGGTCCT+TGG - chr2_2:21632707-21632726 Msa0243900:intron 45.0%
CCAGGCCAGTAAATTACTCA+TGG + chr2_2:21633680-21633699 None:intergenic 45.0%
CCATGAGTAATTTACTGGCC+TGG - chr2_2:21633677-21633696 Msa0243900:intron 45.0%
GGCAATGATCAGTCCATGTA+AGG - chr2_2:21633785-21633804 Msa0243900:intron 45.0%
AAGATTCCTTCCCCCTTACA+TGG + chr2_2:21633801-21633820 None:intergenic 45.0%
TCAAAGCCACCATACTTCGA+TGG - chr2_2:21633999-21634018 Msa0243900:intron 45.0%
GTCAAACGGCAAAGGAAATG+TGG - chr2_2:21634264-21634283 Msa0243900:intron 45.0%
!! ATGTACTATGTTGGCTCACC+GGG - chr2_2:21634854-21634873 Msa0243900:intron 45.0%
GCGTACTAGAGTAGACATGA+AGG - chr2_2:21635170-21635189 Msa0243900:intron 45.0%
GCTTGTGAATGGGAACACAA+AGG + chr2_2:21635351-21635370 None:intergenic 45.0%
! CTCTATGTCTAAGATGCGCT+TGG + chr2_2:21635401-21635420 None:intergenic 45.0%
ATGCTGCCATAACAAATGGG+TGG - chr2_2:21635434-21635453 Msa0243900:intron 45.0%
! TGTAGGCCACCCATTTGTTA+TGG + chr2_2:21635443-21635462 None:intergenic 45.0%
ACTCCTTCACAAAGTGGATG+TGG + chr2_2:21635492-21635511 None:intergenic 45.0%
TGCAGCAGCAAAGCAAAAAG+CGG + chr2_2:21635569-21635588 None:intergenic 45.0%
! CCCCTTTTTACAGGTAACAG+TGG + chr2_2:21635634-21635653 None:intergenic 45.0%
CTGTTACCTGTAAAAAGGGG+TGG - chr2_2:21635634-21635653 Msa0243900:intron 45.0%
ACCTGTAAAAAGGGGTGGAA+AGG - chr2_2:21635639-21635658 Msa0243900:intron 45.0%
CCTGTAAAAAGGGGTGGAAA+GGG - chr2_2:21635640-21635659 Msa0243900:intron 45.0%
TAACCCTTCTCCGGTCAATT+GGG + chr2_2:21636162-21636181 None:intergenic 45.0%
TTAACCCTTCTCCGGTCAAT+TGG + chr2_2:21636163-21636182 None:intergenic 45.0%
TTTGTTTGCGTTAGGGGGTT+TGG + chr2_2:21636324-21636343 None:intergenic 45.0%
AGAGACAGCTTTGCATCTCT+TGG - chr2_2:21636651-21636670 Msa0243900:intron 45.0%
GGCTCAAAATCGAATGCCTT+TGG - chr2_2:21636672-21636691 Msa0243900:intron 45.0%
ATGCAAGGGTTTACCAGGAT+TGG + chr2_2:21636743-21636762 None:intergenic 45.0%
TCCTAGCTTGATATGGGATG+TGG - chr2_2:21637006-21637025 Msa0243900:intron 45.0%
TCCACATCCCATATCAAGCT+AGG + chr2_2:21637010-21637029 None:intergenic 45.0%
CGTCGAGTTACTATGGTTTG+AGG - chr2_2:21637234-21637253 Msa0243900:intron 45.0%
TAAGAGAAAACGCAGAGTCG+TGG - chr2_2:21637538-21637557 Msa0243900:intron 45.0%
TAGGAACCAATGTCGAACCA+TGG + chr2_2:21637902-21637921 None:intergenic 45.0%
! TGGAGTACTCTATCTAAGCC+TGG - chr2_2:21638014-21638033 Msa0243900:intron 45.0%
ACGATCCAATCTCCTAGGTA+TGG - chr2_2:21638166-21638185 Msa0243900:five_prime_UTR 45.0%
TCCAATCTCCTAGGTATGGT+CGG - chr2_2:21638170-21638189 Msa0243900:five_prime_UTR 45.0%
TTCAGTACTTCACCAATCCG+GGG + chr2_2:21638196-21638215 None:intergenic 45.0%
CTTCAGTACTTCACCAATCC+GGG + chr2_2:21638197-21638216 None:intergenic 45.0%
!!! AATTTTGATATTAAAATAAA+GGG - chr2_2:21631874-21631893 Msa0243900:CDS 5.0%
!!! TTGTATAAATATTATTTTTA+AGG - chr2_2:21632950-21632969 Msa0243900:intron 5.0%
!!! TGTATAAATATTATTTTTAA+GGG - chr2_2:21632951-21632970 Msa0243900:intron 5.0%
! TGGTGTCAAACTCACGTGTG+TGG + chr2_2:21629702-21629721 None:intergenic 50.0%
ACGAAATTCTAGCCCGTGCT+TGG - chr2_2:21630038-21630057 Msa0243900:intron 50.0%
GGCATCTACCACATCCACAT+CGG - chr2_2:21631614-21631633 Msa0243900:intron 50.0%
CTAAGACACCGATGTGGATG+TGG + chr2_2:21631625-21631644 None:intergenic 50.0%
ATCAGTCCATGTAAGGGGGA+AGG - chr2_2:21633792-21633811 Msa0243900:intron 50.0%
! TGTGGTGATACTGGAGGTGT+AGG + chr2_2:21634436-21634455 None:intergenic 50.0%
AGTGTCGTATAGAGCTGCTG+CGG + chr2_2:21634464-21634483 None:intergenic 50.0%
TGTAGATTTGGACCGGTGTC+CGG + chr2_2:21634625-21634644 None:intergenic 50.0%
TTTAGCCAGTGGCACTCGAA+AGG + chr2_2:21635049-21635068 None:intergenic 50.0%
! TTTTGCTTTGCTGCTGCAGC+TGG - chr2_2:21635571-21635590 Msa0243900:intron 50.0%
! CCCTTTCCACCCCTTTTTAC+AGG + chr2_2:21635643-21635662 None:intergenic 50.0%
GAAACGGTAGCCCAATTGAC+CGG - chr2_2:21636149-21636168 Msa0243900:intron 50.0%
TAGCCCAATTGACCGGAGAA+GGG - chr2_2:21636156-21636175 Msa0243900:intron 50.0%
!! TGTCTATGGTGGACCGATGA+TGG + chr2_2:21636503-21636522 None:intergenic 50.0%
TCGGTCCACCATAGACAACA+TGG - chr2_2:21636506-21636525 Msa0243900:intron 50.0%
CGGTCCACCATAGACAACAT+GGG - chr2_2:21636507-21636526 Msa0243900:intron 50.0%
! GCCCTATTTGATGGACCAGA+TGG + chr2_2:21637090-21637109 None:intergenic 50.0%
AGTTGCAGCAGCAAACACTC+CGG + chr2_2:21637613-21637632 None:intergenic 50.0%
GCTGCTGCAACTACTTTACC+AGG - chr2_2:21637621-21637640 Msa0243900:intron 50.0%
GCTGCAACTACTTTACCAGG+TGG - chr2_2:21637624-21637643 Msa0243900:intron 50.0%
GTGCTTCCCTTTGGCCGATT+TGG + chr2_2:21629165-21629184 None:intergenic 55.0%
GAGAGAAGAAGGGGGTAGTG+TGG + chr2_2:21629195-21629214 None:intergenic 55.0%
! CCAGTGACAAATGTCGGCTG+CGG + chr2_2:21629863-21629882 None:intergenic 55.0%
CGCAGCCGACATTTGTCACT+GGG - chr2_2:21629861-21629880 Msa0243900:three_prime_UTR 55.0%
ATTCTAGCCCGTGCTTGGCA+CGG - chr2_2:21630043-21630062 Msa0243900:intron 55.0%
GTGCTTCCCTTTGGCCGATT+TGG + chr2_2:21629165-21629184 None:intergenic 55.0%
GAGAGAAGAAGGGGGTAGTG+TGG + chr2_2:21629195-21629214 None:intergenic 55.0%
AGCCACACGGATGTAGACGT+AGG - chr2_2:21631592-21631611 Msa0243900:intron 55.0%
GCCACACGGATGTAGACGTA+GGG - chr2_2:21631593-21631612 Msa0243900:intron 55.0%
CGATGCTTAACTCAAGGGCC+AGG + chr2_2:21633698-21633717 None:intergenic 55.0%
GGTGCTTGTGGTGATACTGG+AGG + chr2_2:21634442-21634461 None:intergenic 55.0%
GTGTCGTATAGAGCTGCTGC+GGG + chr2_2:21634463-21634482 None:intergenic 55.0%
! CAACACCTTTCGAGTGCCAC+TGG - chr2_2:21635041-21635060 Msa0243900:intron 55.0%
! TCTAAGATGCGCTTGGCTGC+TGG + chr2_2:21635394-21635413 None:intergenic 55.0%
TGCTGCTGCAGCTGGAAACA+TGG - chr2_2:21635579-21635598 Msa0243900:intron 55.0%
GTAGCCCAATTGACCGGAGA+AGG - chr2_2:21636155-21636174 Msa0243900:intron 55.0%
! AGGGGGTTTGGTAGCTCAAC+TGG + chr2_2:21636312-21636331 None:intergenic 55.0%
CCAGAGTCATCAGTACCACC+TGG + chr2_2:21637642-21637661 None:intergenic 55.0%
!! CCAGGTGGTACTGATGACTC+TGG - chr2_2:21637639-21637658 Msa0243900:intron 55.0%
GCCGACCATACCTAGGAGAT+TGG + chr2_2:21638174-21638193 None:intergenic 55.0%
CCGCAGCCGACATTTGTCAC+TGG - chr2_2:21629860-21629879 Msa0243900:three_prime_UTR 60.0%
TTCTAGCCCGTGCTTGGCAC+GGG - chr2_2:21630044-21630063 Msa0243900:intron 60.0%
ATGGACACCCGTGCCAAGCA+CGG + chr2_2:21630054-21630073 None:intergenic 60.0%
GCCCTACGTCTACATCCGTG+TGG + chr2_2:21631597-21631616 None:intergenic 60.0%
GCGTGGCTAAGACACCGATG+TGG + chr2_2:21631631-21631650 None:intergenic 60.0%
GCGGGTGCTTGTGGTGATAC+TGG + chr2_2:21634445-21634464 None:intergenic 60.0%
TGGACACCCGTGCCAAGCAC+GGG + chr2_2:21630053-21630072 None:intergenic 65.0%
AGAGCTGCTGCGGGTGCTTG+TGG + chr2_2:21634454-21634473 None:intergenic 65.0%
CTCCTAGGTATGGTCGGCCC+CGG - chr2_2:21638176-21638195 Msa0243900:five_prime_UTR 65.0%
ATCCGGGGCCGACCATACCT+AGG + chr2_2:21638181-21638200 None:intergenic 65.0%
AGGTATGGTCGGCCCCGGAT+TGG - chr2_2:21638181-21638200 Msa0243900:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 21629151 21638328 21629151 ID=Msa0243900;Name=Msa0243900
chr2_2 mRNA 21629151 21638328 21629151 ID=Msa0243900-mRNA-1;Parent=Msa0243900;Name=Msa0243900-mRNA-1;_AED=0.31;_eAED=0.31;_QI=302|1|1|1|0.5|0.33|9|1550|279
chr2_2 exon 21629151 21630035 21629151 ID=Msa0243900-mRNA-1:exon:8513;Parent=Msa0243900-mRNA-1
chr2_2 exon 21630224 21630648 21630224 ID=Msa0243900-mRNA-1:exon:8512;Parent=Msa0243900-mRNA-1
chr2_2 exon 21630731 21630905 21630731 ID=Msa0243900-mRNA-1:exon:8511;Parent=Msa0243900-mRNA-1
chr2_2 exon 21631694 21632159 21631694 ID=Msa0243900-mRNA-1:exon:8510;Parent=Msa0243900-mRNA-1
chr2_2 exon 21632968 21633071 21632968 ID=Msa0243900-mRNA-1:exon:8509;Parent=Msa0243900-mRNA-1
chr2_2 exon 21633179 21633532 21633179 ID=Msa0243900-mRNA-1:exon:8508;Parent=Msa0243900-mRNA-1
chr2_2 exon 21636186 21636231 21636186 ID=Msa0243900-mRNA-1:exon:8507;Parent=Msa0243900-mRNA-1
chr2_2 exon 21638060 21638098 21638060 ID=Msa0243900-mRNA-1:exon:8506;Parent=Msa0243900-mRNA-1
chr2_2 exon 21638131 21638328 21638131 ID=Msa0243900-mRNA-1:exon:8505;Parent=Msa0243900-mRNA-1
chr2_2 five_prime_UTR 21638131 21638328 21638131 ID=Msa0243900-mRNA-1:five_prime_utr;Parent=Msa0243900-mRNA-1
chr2_2 five_prime_UTR 21638060 21638098 21638060 ID=Msa0243900-mRNA-1:five_prime_utr;Parent=Msa0243900-mRNA-1
chr2_2 five_prime_UTR 21636186 21636231 21636186 ID=Msa0243900-mRNA-1:five_prime_utr;Parent=Msa0243900-mRNA-1
chr2_2 five_prime_UTR 21633514 21633532 21633514 ID=Msa0243900-mRNA-1:five_prime_utr;Parent=Msa0243900-mRNA-1
chr2_2 CDS 21633179 21633513 21633179 ID=Msa0243900-mRNA-1:cds;Parent=Msa0243900-mRNA-1
chr2_2 CDS 21632968 21633071 21632968 ID=Msa0243900-mRNA-1:cds;Parent=Msa0243900-mRNA-1
chr2_2 CDS 21631759 21632159 21631759 ID=Msa0243900-mRNA-1:cds;Parent=Msa0243900-mRNA-1
chr2_2 three_prime_UTR 21631694 21631758 21631694 ID=Msa0243900-mRNA-1:three_prime_utr;Parent=Msa0243900-mRNA-1
chr2_2 three_prime_UTR 21630731 21630905 21630731 ID=Msa0243900-mRNA-1:three_prime_utr;Parent=Msa0243900-mRNA-1
chr2_2 three_prime_UTR 21630224 21630648 21630224 ID=Msa0243900-mRNA-1:three_prime_utr;Parent=Msa0243900-mRNA-1
chr2_2 three_prime_UTR 21629151 21630035 21629151 ID=Msa0243900-mRNA-1:three_prime_utr;Parent=Msa0243900-mRNA-1
Gene Sequence

>Msa0243900

ATGGACAATACCATCATTGAAGGAAGATCCATTTCAAAGCCACCATACTTCGATGGTACAAACTGTACTGAATGGAAAGAGCGTACAAAGATATTTATACAATCAGTTGACTACAAACTTTGGCTTGTGATTAAAAATGGACCAAAAATTCCAAAAAATTTAATAAATGGTCAAGAAGAGTTGAAATCTGAAGATGAATTCAATGATGAAGATATGAAGAACATGGAACAAGAAGCAAAAGCAAAATATATATTATGTTGTGCCATAAATCCAGATGATCTTAAGAGAATTTCAAGTTGTCAAACGGCAAAGGAAATGTGGGATGAGCTTGACAAGGAAGTGACAACATCTAATGTGAATCCTACACCTCCAGTATCACCACAAGCACCCGCAGCAGCTCTATACGACACTCCTAATCTTGAGTTTTTAGAGGAAACAGGTGATGATCAAAAGAAAAAGTTTCTCAACCTTTGTGTTCCCATTCACAAGCATGCTCTAAATGGAAACTGGCCAGCAGCCAAGCGCATCTTAGACATAGAGAATAAGCTGAAAAATGCTGCCATAACAAATGGGTGGCCTACACTATTGCATATTGCTGCAGGTGCAAACCACATCCACTTTGTGAAGGAGTTATTGAATATGCTTGATGACAGTGATATCGCATTGCAAGATGTCAACGGAAACACCGCTTTTTGCTTTGCTGCTGCAGCTGGAAACATGGAAATTGTTGACTTAATGTTGGATAGGAACCCACTGTTACCTGTAAAAAGGGGTGGAAAGGGATATACTCCTATTCAGTATGCTGCTTTGCAAGGAAGATGCAAAATGACATCGTTTTGA

Protein sequence

>Msa0243900

MDNTIIEGRSISKPPYFDGTNCTEWKERTKIFIQSVDYKLWLVIKNGPKIPKNLINGQEELKSEDEFNDEDMKNMEQEAKAKYILCCAINPDDLKRISSCQTAKEMWDELDKEVTTSNVNPTPPVSPQAPAAALYDTPNLEFLEETGDDQKKKFLNLCVPIHKHALNGNWPAAKRILDIENKLKNAAITNGWPTLLHIAAGANHIHFVKELLNMLDDSDIALQDVNGNTAFCFAAAAGNMEIVDLMLDRNPLLPVKRGGKGYTPIQYAALQGRCKMTSF*