AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1048830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048830 MtrunA17_Chr7g0217331 95.652 161 7 0 1 161 114 274 8.07e-108 308
Msa1048830 MtrunA17_Chr4g0044201 47.020 151 78 2 1 149 101 251 5.17e-45 148
Msa1048830 MtrunA17_Chr8g0379911 51.825 137 65 1 1 136 115 251 2.37e-44 147
Msa1048830 MtrunA17_Chr2g0333771 47.333 150 76 1 1 147 157 306 5.78e-44 147
Msa1048830 MtrunA17_Chr2g0284591 47.682 151 77 2 1 149 113 263 1.14e-43 145
Msa1048830 MtrunA17_Chr8g0379901 48.175 137 70 1 1 136 116 252 5.16e-43 144
Msa1048830 MtrunA17_Chr4g0001221 46.405 153 80 1 1 151 152 304 1.02e-42 144
Msa1048830 MtrunA17_Chr2g0284631 47.445 137 71 1 1 136 168 304 1.40e-42 144
Msa1048830 MtrunA17_Chr2g0284611 46.405 153 80 2 1 151 115 267 7.31e-42 140
Msa1048830 MtrunA17_Chr2g0284601 44.371 151 82 2 1 149 67 217 1.33e-40 136
Msa1048830 MtrunA17_Chr5g0435051 46.207 145 77 1 2 145 117 261 1.72e-40 137
Msa1048830 MtrunA17_Chr2g0284581 46.715 137 72 1 1 136 115 251 1.95e-40 137
Msa1048830 MtrunA17_Chr1g0201331 49.286 140 71 0 1 140 151 290 6.03e-40 136
Msa1048830 MtrunA17_Chr3g0079421 47.059 136 69 2 2 135 103 237 1.96e-37 129
Msa1048830 MtrunA17_Chr5g0426131 43.796 137 73 1 1 133 112 248 6.86e-33 117
Msa1048830 MtrunA17_Chr1g0184541 36.232 138 88 0 1 138 139 276 6.21e-27 102
Msa1048830 MtrunA17_Chr4g0001121 49.425 87 42 1 67 151 11 97 6.24e-25 92.0
Msa1048830 MtrunA17_Chr2g0331261 40.141 142 75 4 3 137 104 242 3.02e-20 84.0
Msa1048830 MtrunA17_Chr5g0399341 41.322 121 69 1 3 121 103 223 3.71e-20 83.6
Msa1048830 MtrunA17_Chr8g0340161 38.732 142 77 4 3 137 103 241 9.60e-19 80.1
Msa1048830 MtrunA17_Chr6g0478191 34.667 150 91 5 3 145 105 254 2.00e-16 73.9
Msa1048830 MtrunA17_Chr1g0212671 36.429 140 86 2 4 140 106 245 5.39e-16 72.8
Msa1048830 MtrunA17_Chr1g0188771 28.662 157 94 5 3 147 105 255 1.68e-14 68.9
Msa1048830 MtrunA17_Chr4g0030861 33.108 148 80 4 4 139 106 246 1.50e-13 66.2
Msa1048830 MtrunA17_Chr1g0146161 36.885 122 72 3 4 121 100 220 9.42e-13 63.9
Msa1048830 MtrunA17_Chr7g0264961 33.813 139 89 2 4 139 106 244 1.91e-12 63.2
Msa1048830 MtrunA17_Chr1g0146171 34.400 125 71 3 4 121 100 220 3.69e-12 62.4
Msa1048830 MtrunA17_Chr4g0001161 43.478 69 39 0 1 69 65 133 2.50e-11 58.2
Msa1048830 MtrunA17_Chr7g0222791 33.803 142 85 5 4 138 106 245 6.72e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048830 AT5G37820.1 49.007 151 75 2 1 149 120 270 1.52e-42 143
Msa1048830 AT5G37820.2 49.007 151 75 2 1 149 156 306 2.44e-42 143
Msa1048830 AT4G18910.1 45.833 144 70 1 1 136 129 272 1.17e-40 138
Msa1048830 AT1G80760.1 42.466 146 84 0 1 146 157 302 8.47e-40 136
Msa1048830 AT4G10380.1 48.571 140 72 0 1 140 155 294 1.83e-39 135
Msa1048830 AT5G37810.1 45.395 152 79 3 1 149 120 270 2.24e-38 132
Msa1048830 AT1G31885.2 36.842 171 98 2 1 161 66 236 2.32e-36 127
Msa1048830 AT4G19030.1 42.361 144 75 1 1 136 132 275 3.61e-36 127
Msa1048830 AT1G31885.1 36.842 171 98 2 1 161 120 290 7.89e-36 126
Msa1048830 AT2G34390.2 41.353 133 70 1 1 125 82 214 8.46e-30 109
Msa1048830 AT2G34390.1 41.353 133 70 1 1 125 124 256 1.39e-29 109
Msa1048830 AT3G06100.3 37.692 130 80 1 1 129 42 171 1.05e-26 100
Msa1048830 AT3G06100.2 37.692 130 80 1 1 129 75 204 8.37e-26 98.6
Msa1048830 AT3G06100.1 37.692 130 80 1 1 129 123 252 1.13e-25 99.4
Msa1048830 AT2G29870.1 43.023 86 49 0 38 123 20 105 1.77e-21 85.1
Msa1048830 AT3G16240.1 37.063 143 79 4 3 137 103 242 1.57e-20 85.1
Msa1048830 AT1G17810.1 34.868 152 93 4 3 149 113 263 2.99e-20 84.7
Msa1048830 AT4G17340.1 41.270 126 69 3 3 124 103 227 2.48e-19 82.0
Msa1048830 AT1G73190.1 34.211 152 95 3 3 149 113 264 3.39e-19 82.0
Msa1048830 AT3G26520.1 36.620 142 83 4 4 139 107 247 5.06e-19 81.3
Msa1048830 AT5G47450.1 40.157 127 69 4 3 124 103 227 1.67e-18 79.7
Msa1048830 AT4G18910.2 41.489 94 47 1 1 86 129 222 1.04e-16 74.3
Msa1048830 AT4G19030.3 37.634 93 50 1 1 85 132 224 6.23e-14 67.0
Msa1048830 AT2G36830.1 33.566 143 85 4 4 139 106 245 1.61e-12 63.5
Msa1048830 AT4G01470.1 33.571 140 88 3 4 138 106 245 4.59e-12 62.4
Msa1048830 AT2G25810.1 36.522 115 69 3 37 148 134 247 4.83e-12 62.4
Msa1048830 AT2G34390.3 35.106 94 53 1 1 86 124 217 2.64e-11 60.1

Find 50 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCATCCTACAAAGGAATT+TGG 0.183476 7_2:-11358897 Msa1048830:CDS
GTTGCCCCTAGCTGCTTTGA+TGG 0.289534 7_2:+11359452 None:intergenic
CAAAGGAATTTGGATCTATA+TGG 0.295740 7_2:-11358887 Msa1048830:CDS
TTCATTGACCCACCTGATAT+TGG 0.297333 7_2:+11358952 None:intergenic
AGTTGAGCTGCAATGTAAAA+TGG 0.299748 7_2:+11359521 None:intergenic
GGTCACAATTTCTATGATTA+GGG 0.307376 7_2:+11359403 None:intergenic
CCTAAAAGTGCACCTGTAAT+TGG 0.313718 7_2:+11358859 None:intergenic
TGGTCACAATTTCTATGATT+AGG 0.319242 7_2:+11359402 None:intergenic
ATAGATCCAAATTCCTTTGT+AGG 0.319351 7_2:+11358891 None:intergenic
GCAGGACCTAATGTCCTTGC+AGG 0.334817 7_2:+11358928 None:intergenic
ATGAATCCTGCAAGGACATT+AGG 0.371302 7_2:-11358934 Msa1048830:CDS
TATATGGTTGGACCAATTAC+AGG 0.381865 7_2:-11358871 Msa1048830:CDS
TTGAGCTATAATTTGTGAAA+TGG 0.385518 7_2:-11358735 Msa1048830:exon
CTAGGGGCAACATCACCTTC+TGG 0.385952 7_2:-11359440 Msa1048830:CDS
TAGGATGAGGAAGCAATTGC+AGG 0.401192 7_2:+11358910 None:intergenic
ATGTGTATGTATCAAACTTA+AGG 0.408837 7_2:-11358598 Msa1048830:three_prime_UTR
TCATTTCATTTCATATGCCT+TGG 0.412135 7_2:+11358667 None:intergenic
ACTATATATATGCACTGAAT+TGG 0.415373 7_2:+11358627 None:intergenic
TTGCAGACAGGAGAGCTTGC+TGG 0.416033 7_2:-11359231 Msa1048830:intron
TTGTGTATCTTCACTGAAAG+AGG 0.418522 7_2:+11358772 None:intergenic
ACCATAGCAAGCATTGTTGC+TGG 0.428605 7_2:-11359186 Msa1048830:CDS
ATTAACCATGTATATTTCAA+TGG 0.432099 7_2:-11358575 Msa1048830:three_prime_UTR
TTTGTGTTTCAATGAAAAGT+TGG 0.445695 7_2:-11358543 Msa1048830:three_prime_UTR
CTTGTATACAGACCAATATC+AGG 0.476662 7_2:-11358964 Msa1048830:intron
CCAAATTCCTTTGTAGGATG+AGG 0.491133 7_2:+11358897 None:intergenic
TACATTGCAGCTCAACTCAC+AGG 0.526436 7_2:-11359515 Msa1048830:CDS
GTTGAGCTGCAATGTAAAAT+GGG 0.539854 7_2:+11359522 None:intergenic
GGAATTTGGATCTATATGGT+TGG 0.550845 7_2:-11358883 Msa1048830:CDS
TAGAGCCATCAAAGCAGCTA+GGG 0.551449 7_2:-11359457 Msa1048830:CDS
TGAGTCGGTAGCAACGGCGG+TGG 0.552053 7_2:+11359358 None:intergenic
CCCAGCAACAATGCTTGCTA+TGG 0.556573 7_2:+11359185 None:intergenic
ACTATTATCACACTTAGCAT+TGG 0.557548 7_2:+11358708 None:intergenic
CCATAGCAAGCATTGTTGCT+GGG 0.563335 7_2:-11359185 Msa1048830:intron
TTAGAGCCATCAAAGCAGCT+AGG 0.567628 7_2:-11359458 Msa1048830:CDS
GAGCTTGCTGGAGTAGCAGT+AGG 0.581443 7_2:-11359219 Msa1048830:CDS
GCTTGAATGTTTGATCCAGA+AGG 0.601229 7_2:+11359425 None:intergenic
AAGATACACAATGAAATGAG+TGG 0.603748 7_2:-11358760 Msa1048830:CDS
GCTATAATTTGTGAAATGGA+CGG 0.606584 7_2:-11358731 Msa1048830:exon
AGATACACAATGAAATGAGT+GGG 0.616363 7_2:-11358759 Msa1048830:CDS
GTCTTATGTTGTGATTCAAG+AGG 0.623428 7_2:-11358830 Msa1048830:CDS
TATATCCATTGAAATATACA+TGG 0.624674 7_2:+11358570 None:intergenic
ATTGCTTCCTCATCCTACAA+AGG 0.632111 7_2:-11358904 Msa1048830:CDS
GGAGATGAACACCATGGTGA+AGG 0.656582 7_2:+11359379 None:intergenic
GTATACAGACCAATATCAGG+TGG 0.657200 7_2:-11358961 Msa1048830:intron
GTGGGTCAATGAATCCTGCA+AGG 0.659002 7_2:-11358942 Msa1048830:CDS
AGAGCCATCAAAGCAGCTAG+GGG 0.676309 7_2:-11359456 Msa1048830:CDS
GATGAACACCATGGTGAAGG+TGG 0.684370 7_2:+11359382 None:intergenic
TATACAGACCAATATCAGGT+GGG 0.685903 7_2:-11358960 Msa1048830:intron
AATTGTGACCACCTTCACCA+TGG 0.697481 7_2:-11359390 Msa1048830:CDS
GGCGGTGGAGATGAACACCA+TGG 0.756004 7_2:+11359373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACATTTTATAAACATTTT+TGG + chr7_2:11358756-11358775 None:intergenic 10.0%
!!! CTAAAATTTTAATATTAAGA+GGG + chr7_2:11358967-11358986 None:intergenic 10.0%
!!! TTAATATTAAAATTTTAGCA+AGG - chr7_2:11358969-11358988 Msa1048830:intron 10.0%
!!! AAACATTTTATAAACATTTT+TGG + chr7_2:11358756-11358775 None:intergenic 10.0%
!!! CTAAAATTTTAATATTAAGA+GGG + chr7_2:11358967-11358986 None:intergenic 10.0%
!!! TTAATATTAAAATTTTAGCA+AGG - chr7_2:11358969-11358988 Msa1048830:intron 10.0%
!!! TGTGTGTATATAATTAATTT+TGG + chr7_2:11358791-11358810 None:intergenic 15.0%
!!! GCTAAAATTTTAATATTAAG+AGG + chr7_2:11358968-11358987 None:intergenic 15.0%
!!! TGTGTGTATATAATTAATTT+TGG + chr7_2:11358791-11358810 None:intergenic 15.0%
!!! GCTAAAATTTTAATATTAAG+AGG + chr7_2:11358968-11358987 None:intergenic 15.0%
!!! CTTTTTTAATAAATGTGACT+GGG + chr7_2:11358922-11358941 None:intergenic 20.0%
!!! TCTTTTTTAATAAATGTGAC+TGG + chr7_2:11358923-11358942 None:intergenic 20.0%
!!! GATAATAGTACATTTTAGTT+TGG - chr7_2:11359373-11359392 Msa1048830:CDS 20.0%
!! ATTAACCATGTATATTTCAA+TGG - chr7_2:11359492-11359511 Msa1048830:CDS 20.0%
!! TATATCCATTGAAATATACA+TGG + chr7_2:11359500-11359519 None:intergenic 20.0%
!!! CTTTTTTAATAAATGTGACT+GGG + chr7_2:11358922-11358941 None:intergenic 20.0%
!!! TCTTTTTTAATAAATGTGAC+TGG + chr7_2:11358923-11358942 None:intergenic 20.0%
!!! GATAATAGTACATTTTAGTT+TGG - chr7_2:11359373-11359392 Msa1048830:CDS 20.0%
!! ATTAACCATGTATATTTCAA+TGG - chr7_2:11359492-11359511 Msa1048830:CDS 20.0%
!! TATATCCATTGAAATATACA+TGG + chr7_2:11359500-11359519 None:intergenic 20.0%
!!! TAATTTTACAGCTTTTGAGT+CGG + chr7_2:11358727-11358746 None:intergenic 25.0%
!!! AATGATTTTATTTTGCAGAC+AGG - chr7_2:11358824-11358843 Msa1048830:CDS 25.0%
! TTAATTAGCATCAAATTACC+AGG + chr7_2:11359059-11359078 None:intergenic 25.0%
!! TTGAGCTATAATTTGTGAAA+TGG - chr7_2:11359332-11359351 Msa1048830:intron 25.0%
! ACTATATATATGCACTGAAT+TGG + chr7_2:11359443-11359462 None:intergenic 25.0%
! ATGTGTATGTATCAAACTTA+AGG - chr7_2:11359469-11359488 Msa1048830:CDS 25.0%
! TTTGTGTTTCAATGAAAAGT+TGG - chr7_2:11359524-11359543 Msa1048830:CDS 25.0%
! TTGTGTTTCAATGAAAAGTT+GGG - chr7_2:11359525-11359544 Msa1048830:CDS 25.0%
!!! TAATTTTACAGCTTTTGAGT+CGG + chr7_2:11358727-11358746 None:intergenic 25.0%
!!! AATGATTTTATTTTGCAGAC+AGG - chr7_2:11358824-11358843 Msa1048830:CDS 25.0%
! TTAATTAGCATCAAATTACC+AGG + chr7_2:11359059-11359078 None:intergenic 25.0%
!! TTGAGCTATAATTTGTGAAA+TGG - chr7_2:11359332-11359351 Msa1048830:intron 25.0%
! ACTATATATATGCACTGAAT+TGG + chr7_2:11359443-11359462 None:intergenic 25.0%
! ATGTGTATGTATCAAACTTA+AGG - chr7_2:11359469-11359488 Msa1048830:CDS 25.0%
GGTCACAATTTCTATGATTA+GGG + chr7_2:11358667-11358686 None:intergenic 30.0%
TGGTCACAATTTCTATGATT+AGG + chr7_2:11358668-11358687 None:intergenic 30.0%
!!! TTAAGAGGGTTCTTGTTTTA+GGG + chr7_2:11358953-11358972 None:intergenic 30.0%
!!! ATTAAGAGGGTTCTTGTTTT+AGG + chr7_2:11358954-11358973 None:intergenic 30.0%
! ATTTTCAAAAGAACCAAACC+TGG - chr7_2:11359038-11359057 Msa1048830:intron 30.0%
ATAGATCCAAATTCCTTTGT+AGG + chr7_2:11359179-11359198 None:intergenic 30.0%
CAAAGGAATTTGGATCTATA+TGG - chr7_2:11359180-11359199 Msa1048830:intron 30.0%
AAGATACACAATGAAATGAG+TGG - chr7_2:11359307-11359326 Msa1048830:intron 30.0%
AGATACACAATGAAATGAGT+GGG - chr7_2:11359308-11359327 Msa1048830:intron 30.0%
! GCTATAATTTGTGAAATGGA+CGG - chr7_2:11359336-11359355 Msa1048830:intron 30.0%
ACTATTATCACACTTAGCAT+TGG + chr7_2:11359362-11359381 None:intergenic 30.0%
TCATTTCATTTCATATGCCT+TGG + chr7_2:11359403-11359422 None:intergenic 30.0%
GGTCACAATTTCTATGATTA+GGG + chr7_2:11358667-11358686 None:intergenic 30.0%
TGGTCACAATTTCTATGATT+AGG + chr7_2:11358668-11358687 None:intergenic 30.0%
!!! TTAAGAGGGTTCTTGTTTTA+GGG + chr7_2:11358953-11358972 None:intergenic 30.0%
!!! ATTAAGAGGGTTCTTGTTTT+AGG + chr7_2:11358954-11358973 None:intergenic 30.0%
! ATTTTCAAAAGAACCAAACC+TGG - chr7_2:11359038-11359057 Msa1048830:intron 30.0%
ATAGATCCAAATTCCTTTGT+AGG + chr7_2:11359179-11359198 None:intergenic 30.0%
CAAAGGAATTTGGATCTATA+TGG - chr7_2:11359180-11359199 Msa1048830:intron 30.0%
AAGATACACAATGAAATGAG+TGG - chr7_2:11359307-11359326 Msa1048830:intron 30.0%
AGATACACAATGAAATGAGT+GGG - chr7_2:11359308-11359327 Msa1048830:intron 30.0%
! GCTATAATTTGTGAAATGGA+CGG - chr7_2:11359336-11359355 Msa1048830:intron 30.0%
ACTATTATCACACTTAGCAT+TGG + chr7_2:11359362-11359381 None:intergenic 30.0%
TCATTTCATTTCATATGCCT+TGG + chr7_2:11359403-11359422 None:intergenic 30.0%
GTTGAGCTGCAATGTAAAAT+GGG + chr7_2:11358548-11358567 None:intergenic 35.0%
AGTTGAGCTGCAATGTAAAA+TGG + chr7_2:11358549-11358568 None:intergenic 35.0%
!!! TAAGAGGGTTCTTGTTTTAG+GGG + chr7_2:11358952-11358971 None:intergenic 35.0%
TAGCATCAAATTACCAGGTT+TGG + chr7_2:11359054-11359073 None:intergenic 35.0%
CTTGTATACAGACCAATATC+AGG - chr7_2:11359103-11359122 Msa1048830:intron 35.0%
TATACAGACCAATATCAGGT+GGG - chr7_2:11359107-11359126 Msa1048830:intron 35.0%
GGAATTTGGATCTATATGGT+TGG - chr7_2:11359184-11359203 Msa1048830:intron 35.0%
TATATGGTTGGACCAATTAC+AGG - chr7_2:11359196-11359215 Msa1048830:CDS 35.0%
GTCTTATGTTGTGATTCAAG+AGG - chr7_2:11359237-11359256 Msa1048830:intron 35.0%
TTGTGTATCTTCACTGAAAG+AGG + chr7_2:11359298-11359317 None:intergenic 35.0%
!!! CATTTTAGTTTGGACATCCA+AGG - chr7_2:11359383-11359402 Msa1048830:CDS 35.0%
GTTGAGCTGCAATGTAAAAT+GGG + chr7_2:11358548-11358567 None:intergenic 35.0%
AGTTGAGCTGCAATGTAAAA+TGG + chr7_2:11358549-11358568 None:intergenic 35.0%
!!! TAAGAGGGTTCTTGTTTTAG+GGG + chr7_2:11358952-11358971 None:intergenic 35.0%
TAGCATCAAATTACCAGGTT+TGG + chr7_2:11359054-11359073 None:intergenic 35.0%
CTTGTATACAGACCAATATC+AGG - chr7_2:11359103-11359122 Msa1048830:intron 35.0%
TATACAGACCAATATCAGGT+GGG - chr7_2:11359107-11359126 Msa1048830:intron 35.0%
GGAATTTGGATCTATATGGT+TGG - chr7_2:11359184-11359203 Msa1048830:intron 35.0%
TATATGGTTGGACCAATTAC+AGG - chr7_2:11359196-11359215 Msa1048830:CDS 35.0%
GTCTTATGTTGTGATTCAAG+AGG - chr7_2:11359237-11359256 Msa1048830:intron 35.0%
TTGTGTATCTTCACTGAAAG+AGG + chr7_2:11359298-11359317 None:intergenic 35.0%
!!! CATTTTAGTTTGGACATCCA+AGG - chr7_2:11359383-11359402 Msa1048830:CDS 35.0%
GCTTGAATGTTTGATCCAGA+AGG + chr7_2:11358645-11358664 None:intergenic 40.0%
!!! AAGAGGGTTCTTGTTTTAGG+GGG + chr7_2:11358951-11358970 None:intergenic 40.0%
GTATACAGACCAATATCAGG+TGG - chr7_2:11359106-11359125 Msa1048830:intron 40.0%
TTCATTGACCCACCTGATAT+TGG + chr7_2:11359118-11359137 None:intergenic 40.0%
ATGAATCCTGCAAGGACATT+AGG - chr7_2:11359133-11359152 Msa1048830:intron 40.0%
ATTGCTTCCTCATCCTACAA+AGG - chr7_2:11359163-11359182 Msa1048830:intron 40.0%
CCAAATTCCTTTGTAGGATG+AGG + chr7_2:11359173-11359192 None:intergenic 40.0%
CCTCATCCTACAAAGGAATT+TGG - chr7_2:11359170-11359189 Msa1048830:intron 40.0%
! CCTAAAAGTGCACCTGTAAT+TGG + chr7_2:11359211-11359230 None:intergenic 40.0%
! CCAATTACAGGTGCACTTTT+AGG - chr7_2:11359208-11359227 Msa1048830:CDS 40.0%
GCTTGAATGTTTGATCCAGA+AGG + chr7_2:11358645-11358664 None:intergenic 40.0%
!!! AAGAGGGTTCTTGTTTTAGG+GGG + chr7_2:11358951-11358970 None:intergenic 40.0%
GTATACAGACCAATATCAGG+TGG - chr7_2:11359106-11359125 Msa1048830:intron 40.0%
TTCATTGACCCACCTGATAT+TGG + chr7_2:11359118-11359137 None:intergenic 40.0%
ATGAATCCTGCAAGGACATT+AGG - chr7_2:11359133-11359152 Msa1048830:intron 40.0%
ATTGCTTCCTCATCCTACAA+AGG - chr7_2:11359163-11359182 Msa1048830:intron 40.0%
CCAAATTCCTTTGTAGGATG+AGG + chr7_2:11359173-11359192 None:intergenic 40.0%
CCTCATCCTACAAAGGAATT+TGG - chr7_2:11359170-11359189 Msa1048830:intron 40.0%
! CCTAAAAGTGCACCTGTAAT+TGG + chr7_2:11359211-11359230 None:intergenic 40.0%
! CCAATTACAGGTGCACTTTT+AGG - chr7_2:11359208-11359227 Msa1048830:CDS 40.0%
TACATTGCAGCTCAACTCAC+AGG - chr7_2:11358552-11358571 Msa1048830:three_prime_UTR 45.0%
TTAGAGCCATCAAAGCAGCT+AGG - chr7_2:11358609-11358628 Msa1048830:three_prime_UTR 45.0%
TAGAGCCATCAAAGCAGCTA+GGG - chr7_2:11358610-11358629 Msa1048830:three_prime_UTR 45.0%
AATTGTGACCACCTTCACCA+TGG - chr7_2:11358677-11358696 Msa1048830:three_prime_UTR 45.0%
!! AGCTTTTGAGTCGGTAGCAA+CGG + chr7_2:11358718-11358737 None:intergenic 45.0%
! ACCATAGCAAGCATTGTTGC+TGG - chr7_2:11358881-11358900 Msa1048830:CDS 45.0%
! CCATAGCAAGCATTGTTGCT+GGG - chr7_2:11358882-11358901 Msa1048830:CDS 45.0%
TAGGATGAGGAAGCAATTGC+AGG + chr7_2:11359160-11359179 None:intergenic 45.0%
!! CAGGTGCACTTTTAGGTGTA+TGG - chr7_2:11359215-11359234 Msa1048830:CDS 45.0%
TACATTGCAGCTCAACTCAC+AGG - chr7_2:11358552-11358571 Msa1048830:three_prime_UTR 45.0%
TTAGAGCCATCAAAGCAGCT+AGG - chr7_2:11358609-11358628 Msa1048830:three_prime_UTR 45.0%
TAGAGCCATCAAAGCAGCTA+GGG - chr7_2:11358610-11358629 Msa1048830:three_prime_UTR 45.0%
AATTGTGACCACCTTCACCA+TGG - chr7_2:11358677-11358696 Msa1048830:three_prime_UTR 45.0%
!! AGCTTTTGAGTCGGTAGCAA+CGG + chr7_2:11358718-11358737 None:intergenic 45.0%
! ACCATAGCAAGCATTGTTGC+TGG - chr7_2:11358881-11358900 Msa1048830:CDS 45.0%
! CCATAGCAAGCATTGTTGCT+GGG - chr7_2:11358882-11358901 Msa1048830:CDS 45.0%
TAGGATGAGGAAGCAATTGC+AGG + chr7_2:11359160-11359179 None:intergenic 45.0%
!! CAGGTGCACTTTTAGGTGTA+TGG - chr7_2:11359215-11359234 Msa1048830:CDS 45.0%
AGAGCCATCAAAGCAGCTAG+GGG - chr7_2:11358611-11358630 Msa1048830:three_prime_UTR 50.0%
GATGAACACCATGGTGAAGG+TGG + chr7_2:11358688-11358707 None:intergenic 50.0%
GGAGATGAACACCATGGTGA+AGG + chr7_2:11358691-11358710 None:intergenic 50.0%
!! TTTTGAGTCGGTAGCAACGG+CGG + chr7_2:11358715-11358734 None:intergenic 50.0%
! CCCAGCAACAATGCTTGCTA+TGG + chr7_2:11358885-11358904 None:intergenic 50.0%
GTGGGTCAATGAATCCTGCA+AGG - chr7_2:11359125-11359144 Msa1048830:intron 50.0%
AGAGCCATCAAAGCAGCTAG+GGG - chr7_2:11358611-11358630 Msa1048830:three_prime_UTR 50.0%
GATGAACACCATGGTGAAGG+TGG + chr7_2:11358688-11358707 None:intergenic 50.0%
GGAGATGAACACCATGGTGA+AGG + chr7_2:11358691-11358710 None:intergenic 50.0%
!! TTTTGAGTCGGTAGCAACGG+CGG + chr7_2:11358715-11358734 None:intergenic 50.0%
! CCCAGCAACAATGCTTGCTA+TGG + chr7_2:11358885-11358904 None:intergenic 50.0%
GTGGGTCAATGAATCCTGCA+AGG - chr7_2:11359125-11359144 Msa1048830:intron 50.0%
! GTTGCCCCTAGCTGCTTTGA+TGG + chr7_2:11358618-11358637 None:intergenic 55.0%
CTAGGGGCAACATCACCTTC+TGG - chr7_2:11358627-11358646 Msa1048830:three_prime_UTR 55.0%
TTGCAGACAGGAGAGCTTGC+TGG - chr7_2:11358836-11358855 Msa1048830:CDS 55.0%
!! GAGCTTGCTGGAGTAGCAGT+AGG - chr7_2:11358848-11358867 Msa1048830:CDS 55.0%
GCAGGACCTAATGTCCTTGC+AGG + chr7_2:11359142-11359161 None:intergenic 55.0%
! GTTGCCCCTAGCTGCTTTGA+TGG + chr7_2:11358618-11358637 None:intergenic 55.0%
CTAGGGGCAACATCACCTTC+TGG - chr7_2:11358627-11358646 Msa1048830:three_prime_UTR 55.0%
TTGCAGACAGGAGAGCTTGC+TGG - chr7_2:11358836-11358855 Msa1048830:CDS 55.0%
!! GAGCTTGCTGGAGTAGCAGT+AGG - chr7_2:11358848-11358867 Msa1048830:CDS 55.0%
GCAGGACCTAATGTCCTTGC+AGG + chr7_2:11359142-11359161 None:intergenic 55.0%
GGCGGTGGAGATGAACACCA+TGG + chr7_2:11358697-11358716 None:intergenic 60.0%
GGCGGTGGAGATGAACACCA+TGG + chr7_2:11358697-11358716 None:intergenic 60.0%
TGAGTCGGTAGCAACGGCGG+TGG + chr7_2:11358712-11358731 None:intergenic 65.0%
TGAGTCGGTAGCAACGGCGG+TGG + chr7_2:11358712-11358731 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 11358543 11359546 11358543 ID=Msa1048830;Name=Msa1048830
chr7_2 mRNA 11358543 11359546 11358543 ID=Msa1048830-mRNA-1;Parent=Msa1048830;Name=Msa1048830-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.33|1|1|1|3|204|161
chr7_2 exon 11358543 11358975 11358543 ID=Msa1048830-mRNA-1:exon:2863;Parent=Msa1048830-mRNA-1
chr7_2 exon 11359186 11359247 11359186 ID=Msa1048830-mRNA-1:exon:2862;Parent=Msa1048830-mRNA-1
chr7_2 exon 11359352 11359546 11359352 ID=Msa1048830-mRNA-1:exon:2861;Parent=Msa1048830-mRNA-1
chr7_2 CDS 11359352 11359546 11359352 ID=Msa1048830-mRNA-1:cds;Parent=Msa1048830-mRNA-1
chr7_2 CDS 11359186 11359247 11359186 ID=Msa1048830-mRNA-1:cds;Parent=Msa1048830-mRNA-1
chr7_2 CDS 11358747 11358975 11358747 ID=Msa1048830-mRNA-1:cds;Parent=Msa1048830-mRNA-1
chr7_2 three_prime_UTR 11358543 11358746 11358543 ID=Msa1048830-mRNA-1:three_prime_utr;Parent=Msa1048830-mRNA-1
Gene Sequence

>Msa1048830

GTCCCATTTTACATTGCAGCTCAACTCACAGGAGCAATTTCAGCTTCATATACACTTCAAATTTTGTTAGAGCCATCAAAGCAGCTAGGGGCAACATCACCTTCTGGATCAAACATTCAAGCCCTAATCATAGAAATTGTGACCACCTTCACCATGGTGTTCATCTCCACCGCCGTTGCTACCGACTCAAAAGCTACAGGAGAGCTTGCTGGAGTAGCAGTAGGTTCATCTGTTACCATAGCAAGCATTGTTGCTGGACCAATATCAGGTGGGTCAATGAATCCTGCAAGGACATTAGGTCCTGCAATTGCTTCCTCATCCTACAAAGGAATTTGGATCTATATGGTTGGACCAATTACAGGTGCACTTTTAGGTGTATGGTCTTATGTTGTGATTCAAGAGGCAGATCATAAACAAGATCTTGCGAGTTCACAATCTCCTCTTTCAGTGAAGATACACAATGAAATGAGTGGGATTGAGCTATAA
Protein sequence

>Msa1048830

VPFYIAAQLTGAISASYTLQILLEPSKQLGATSPSGSNIQALIIEIVTTFTMVFISTAVATDSKATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIASSSYKGIWIYMVGPITGALLGVWSYVVIQEADHKQDLASSQSPLSVKIHNEMSGIEL*