AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1049960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1049960 MtrunA17_Chr7g0218811 90.854 328 28 2 1 328 125 450 0.0 614
Msa1049960 MtrunA17_Chr7g0218821 79.817 327 64 2 1 327 126 450 0.0 543
Msa1049960 MtrunA17_Chr7g0218831 70.031 327 96 2 1 327 115 439 2.08e-173 488
Msa1049960 MtrunA17_Chr7g0218841 69.512 328 97 3 1 327 115 440 1.41e-170 481
Msa1049960 MtrunA17_Chr7g0218791 57.187 327 137 1 1 327 121 444 2.45e-138 399
Msa1049960 MtrunA17_Chr6g0464871 34.012 344 196 7 1 324 131 463 4.98e-55 186
Msa1049960 MtrunA17_Chr5g0448551 32.817 323 202 9 3 316 118 434 7.85e-52 177
Msa1049960 MtrunA17_Chr5g0426431 33.523 352 202 10 1 325 129 475 1.41e-51 177
Msa1049960 MtrunA17_Chr6g0464841 33.140 344 199 8 1 324 119 451 5.48e-51 175
Msa1049960 MtrunA17_Chr3g0078841 31.909 351 208 10 1 324 128 474 7.73e-51 175
Msa1049960 MtrunA17_Chr4g0053501 32.955 352 196 13 3 325 122 462 1.50e-49 172
Msa1049960 MtrunA17_Chr1g0207981 30.029 343 214 8 3 325 134 470 2.94e-49 171
Msa1049960 MtrunA17_Chr6g0454401 31.714 350 209 10 1 324 132 477 5.28e-49 170
Msa1049960 MtrunA17_Chr6g0454221 38.865 229 121 4 111 324 3 227 1.32e-48 165
Msa1049960 MtrunA17_Chr6g0464861 31.395 344 205 8 1 324 118 450 1.35e-48 169
Msa1049960 MtrunA17_Chr7g0250001 30.904 343 206 10 3 325 114 445 2.19e-48 168
Msa1049960 MtrunA17_Chr7g0217881 39.574 235 124 6 104 324 228 458 2.64e-48 168
Msa1049960 MtrunA17_Chr7g0249981 30.612 343 207 9 3 325 133 464 4.44e-48 168
Msa1049960 MtrunA17_Chr3g0112771 33.533 334 192 9 11 325 127 449 5.82e-48 167
Msa1049960 MtrunA17_Chr6g0454341 31.624 351 209 10 1 324 128 474 6.84e-48 167
Msa1049960 MtrunA17_Chr3g0118671 31.250 352 209 9 2 324 123 470 1.71e-47 166
Msa1049960 MtrunA17_Chr6g0454121 33.631 336 190 11 16 324 146 475 2.99e-47 166
Msa1049960 MtrunA17_Chr5g0412111 31.124 347 207 8 4 326 122 460 4.15e-47 165
Msa1049960 MtrunA17_Chr3g0092641 31.909 351 205 10 1 323 129 473 4.83e-47 165
Msa1049960 MtrunA17_Chr6g0454151 32.335 334 195 10 22 328 149 478 5.26e-47 165
Msa1049960 MtrunA17_Chr6g0464921 33.046 348 197 9 1 325 119 453 6.09e-47 164
Msa1049960 MtrunA17_Chr6g0454331 30.199 351 215 10 1 325 130 476 8.85e-47 164
Msa1049960 MtrunA17_Chr3g0118661 32.698 315 183 8 1 290 129 439 1.40e-46 164
Msa1049960 MtrunA17_Chr6g0454321 30.931 333 199 10 1 306 128 456 2.40e-46 166
Msa1049960 MtrunA17_Chr8g0336331 30.769 351 212 9 1 324 127 473 3.72e-46 162
Msa1049960 MtrunA17_Chr6g0454261 37.398 246 132 7 97 324 235 476 4.36e-46 162
Msa1049960 MtrunA17_Chr6g0454301 31.339 351 210 9 1 324 381 727 4.59e-46 166
Msa1049960 MtrunA17_Chr6g0454301 35.776 232 131 5 111 328 3 230 1.05e-38 145
Msa1049960 MtrunA17_Chr4g0053321 29.915 351 208 10 3 325 137 477 5.14e-46 163
Msa1049960 MtrunA17_Chr2g0278711 30.791 354 213 11 1 325 124 474 5.58e-46 162
Msa1049960 MtrunA17_Chr6g0454131 32.440 336 194 11 16 324 146 475 6.04e-46 162
Msa1049960 MtrunA17_Chr6g0454271 37.200 250 133 7 94 324 39 283 1.01e-45 157
Msa1049960 MtrunA17_Chr8g0359821 31.461 356 202 9 1 324 129 474 1.80e-45 161
Msa1049960 MtrunA17_Chr3g0118691 30.398 352 212 9 2 324 132 479 2.09e-45 161
Msa1049960 MtrunA17_Chr6g0453951 29.096 354 221 10 1 328 178 527 2.13e-45 162
Msa1049960 MtrunA17_Chr6g0454141 35.341 249 139 5 94 324 232 476 2.73e-45 160
Msa1049960 MtrunA17_Chr3g0118771 31.054 351 209 11 3 324 139 485 3.76e-45 160
Msa1049960 MtrunA17_Chr5g0423981 36.000 250 138 6 97 328 200 445 5.27e-45 159
Msa1049960 MtrunA17_Chr3g0118701 30.966 352 210 11 3 325 133 480 1.24e-44 159
Msa1049960 MtrunA17_Chr6g0454201 33.544 316 180 12 35 324 166 477 1.44e-44 159
Msa1049960 MtrunA17_Chr6g0454361 36.017 236 136 4 101 325 247 478 1.64e-44 158
Msa1049960 MtrunA17_Chr6g0454191 30.000 350 215 9 1 324 132 477 2.70e-44 158
Msa1049960 MtrunA17_Chr5g0412131 31.232 349 206 8 4 326 128 468 3.47e-44 157
Msa1049960 MtrunA17_Chr5g0414321 29.107 347 218 9 1 328 115 452 3.56e-44 157
Msa1049960 MtrunA17_Chr8g0377921 31.161 353 211 11 1 325 113 461 4.79e-44 157
Msa1049960 MtrunA17_Chr6g0464881 29.023 348 216 8 1 328 119 455 5.92e-44 156
Msa1049960 MtrunA17_Chr6g0453961 36.000 250 138 6 97 328 245 490 9.52e-44 156
Msa1049960 MtrunA17_Chr6g0454211 30.484 351 212 11 1 324 418 763 1.05e-43 159
Msa1049960 MtrunA17_Chr6g0454211 34.375 160 65 5 97 244 105 236 7.13e-20 90.5
Msa1049960 MtrunA17_Chr6g0454291 29.429 350 217 10 1 324 128 473 1.28e-43 156
Msa1049960 MtrunA17_Chr5g0426401 33.108 296 169 10 57 328 21 311 1.56e-43 152
Msa1049960 MtrunA17_Chr5g0414331 29.107 347 214 10 1 326 117 452 4.16e-43 154
Msa1049960 MtrunA17_Chr3g0112761 33.038 339 198 8 6 324 117 446 6.64e-43 154
Msa1049960 MtrunA17_Chr6g0454181 29.429 350 217 10 1 324 131 476 8.36e-43 154
Msa1049960 MtrunA17_Chr7g0249931 28.530 347 213 10 1 325 148 481 1.44e-42 153
Msa1049960 MtrunA17_Chr3g0118711 31.307 329 196 9 2 304 130 454 2.57e-42 152
Msa1049960 MtrunA17_Chr7g0232401 29.107 347 216 9 4 325 124 465 5.32e-42 151
Msa1049960 MtrunA17_Chr7g0249961 35.622 233 134 5 106 325 28 257 1.01e-41 146
Msa1049960 MtrunA17_Chr4g0050341 30.631 333 199 9 1 305 137 465 4.15e-41 149
Msa1049960 MtrunA17_Chr6g0452771 36.179 246 135 6 97 324 235 476 5.44e-41 149
Msa1049960 MtrunA17_Chr8g0380531 28.280 343 217 9 3 325 122 455 1.37e-40 147
Msa1049960 MtrunA17_Chr3g0121991 30.028 363 209 11 1 325 188 543 2.00e-40 148
Msa1049960 MtrunA17_Chr3g0118721 34.914 232 130 6 110 324 59 286 2.32e-40 143
Msa1049960 MtrunA17_Chr8g0377941 36.818 220 129 4 112 325 244 459 7.56e-40 145
Msa1049960 MtrunA17_Chr8g0335161 30.286 350 207 13 4 323 120 462 8.42e-40 145
Msa1049960 MtrunA17_Chr5g0401721 30.659 349 199 14 7 325 133 468 2.17e-39 144
Msa1049960 MtrunA17_Chr8g0347281 34.733 262 144 9 83 320 207 465 7.72e-39 143
Msa1049960 MtrunA17_Chr6g0486251 29.226 349 209 13 4 323 121 460 1.55e-38 142
Msa1049960 MtrunA17_Chr6g0486201 29.226 349 209 13 4 323 121 460 1.55e-38 142
Msa1049960 MtrunA17_Chr8g0373301 29.261 352 204 12 4 323 124 462 2.25e-38 142
Msa1049960 MtrunA17_Chr5g0412101 28.857 350 214 8 4 326 128 469 3.82e-38 141
Msa1049960 MtrunA17_Chr6g0454171 33.884 242 123 7 97 324 88 306 4.31e-38 137
Msa1049960 MtrunA17_Chr8g0339451 32.343 303 170 11 53 323 160 459 5.47e-38 140
Msa1049960 MtrunA17_Chr3g0122001 29.006 362 210 12 3 325 597 950 9.69e-38 143
Msa1049960 MtrunA17_Chr3g0122001 28.650 363 211 13 3 325 117 471 1.04e-33 131
Msa1049960 MtrunA17_Chr8g0336651 29.915 351 208 10 4 323 896 1239 1.36e-37 142
Msa1049960 MtrunA17_Chr8g0336651 36.287 237 118 9 116 327 237 465 5.54e-35 135
Msa1049960 MtrunA17_Chr8g0336651 31.660 259 144 5 78 323 532 770 1.23e-34 134
Msa1049960 MtrunA17_Chr6g0449931 36.752 234 123 6 111 323 234 463 1.46e-37 139
Msa1049960 MtrunA17_Chr3g0098111 33.628 226 134 6 115 324 241 466 1.70e-37 139
Msa1049960 MtrunA17_Chr6g0462571 29.102 323 197 10 4 303 124 437 1.72e-37 139
Msa1049960 MtrunA17_Chr6g0459311 29.143 350 208 14 4 323 128 467 1.77e-37 139
Msa1049960 MtrunA17_Chr1g0153461 36.058 208 114 5 135 323 1 208 2.50e-37 133
Msa1049960 MtrunA17_Chr8g0336691 28.530 347 216 8 4 323 1034 1375 3.05e-37 141
Msa1049960 MtrunA17_Chr8g0336691 30.216 278 155 6 78 323 199 469 2.32e-35 136
Msa1049960 MtrunA17_Chr8g0336691 29.042 334 203 8 4 323 595 908 5.48e-33 129
Msa1049960 MtrunA17_Chr8g0365811 29.143 350 217 12 1 324 610 954 4.31e-37 141
Msa1049960 MtrunA17_Chr8g0365811 30.422 332 190 14 1 301 128 449 2.01e-34 133
Msa1049960 MtrunA17_Chr3g0118751 30.086 349 190 12 1 324 122 441 5.19e-37 137
Msa1049960 MtrunA17_Chr8g0347271 36.087 230 124 7 111 320 240 466 5.22e-37 138
Msa1049960 MtrunA17_Chr1g0153451 34.468 235 131 6 108 323 229 459 5.47e-37 138
Msa1049960 MtrunA17_Chr4g0032331 28.955 335 209 11 11 328 128 450 6.42e-37 137
Msa1049960 MtrunA17_Chr8g0339461 32.841 271 150 9 83 323 199 467 1.08e-36 137
Msa1049960 MtrunA17_Chr6g0454351 27.731 357 205 13 1 328 133 465 1.69e-36 136
Msa1049960 MtrunA17_Chr8g0339441 37.981 208 107 6 138 323 218 425 2.26e-36 135
Msa1049960 MtrunA17_Chr7g0275511 34.764 233 130 5 111 323 241 471 2.46e-36 136
Msa1049960 MtrunA17_Chr1g0207971 33.484 221 133 6 115 324 233 450 1.38e-35 134
Msa1049960 MtrunA17_Chr6g0462541 30.183 328 186 11 4 303 127 439 1.66e-35 134
Msa1049960 MtrunA17_Chr8g0334861 32.601 273 149 8 74 325 203 461 1.78e-35 134
Msa1049960 MtrunA17_Chr7g0232391 32.721 272 155 8 78 323 192 461 2.48e-35 133
Msa1049960 MtrunA17_Chr3g0079731 33.333 237 134 7 111 325 244 478 3.50e-35 133
Msa1049960 MtrunA17_Chr8g0355011 36.893 206 117 5 126 324 159 358 3.88e-35 131
Msa1049960 MtrunA17_Chr7g0232411 28.161 348 215 11 4 323 121 461 5.40e-35 132
Msa1049960 MtrunA17_Chr7g0232311 34.468 235 128 7 111 324 231 460 1.64e-34 131
Msa1049960 MtrunA17_Chr7g0243631 28.889 360 212 12 3 325 132 484 2.00e-34 131
Msa1049960 MtrunA17_Chr1g0207951 34.389 221 131 6 115 324 888 1105 2.39e-34 133
Msa1049960 MtrunA17_Chr1g0207951 33.468 248 140 8 95 324 327 567 2.94e-34 133
Msa1049960 MtrunA17_Chr1g0161351 29.598 348 210 14 3 324 156 494 2.91e-34 131
Msa1049960 MtrunA17_Chr8g0335141 29.859 355 202 16 4 323 122 464 2.92e-34 130
Msa1049960 MtrunA17_Chr7g0232331 34.052 232 129 8 113 323 234 462 3.14e-34 130
Msa1049960 MtrunA17_Chr8g0339601 32.836 268 148 9 86 323 61 326 3.67e-34 127
Msa1049960 MtrunA17_Chr1g0207931 33.186 226 135 6 115 324 269 494 5.01e-34 130
Msa1049960 MtrunA17_Chr8g0334851 31.636 275 146 10 77 319 197 461 5.10e-34 130
Msa1049960 MtrunA17_Chr7g0243681 28.732 355 214 11 3 325 130 477 6.77e-34 130
Msa1049960 MtrunA17_Chr6g0462551 28.086 324 196 11 6 303 128 440 7.84e-34 129
Msa1049960 MtrunA17_Chr8g0336731 33.476 233 123 7 116 324 263 487 1.80e-33 129
Msa1049960 MtrunA17_Chr7g0232341 34.199 231 130 8 113 323 234 462 2.17e-33 128
Msa1049960 MtrunA17_Chr7g0265141 28.371 356 197 11 3 324 151 482 2.50e-33 128
Msa1049960 MtrunA17_Chr4g0044511 28.428 299 183 9 57 324 203 501 2.68e-33 128
Msa1049960 MtrunA17_Chr1g0207831 29.630 351 201 13 3 324 127 460 3.40e-33 127
Msa1049960 MtrunA17_Chr8g0336741 31.250 272 158 6 78 323 199 467 4.03e-33 127
Msa1049960 MtrunA17_Chr7g0275681 32.203 236 137 6 116 328 246 481 4.33e-33 127
Msa1049960 MtrunA17_Chr5g0393591 27.463 335 197 10 3 325 133 433 4.97e-33 127
Msa1049960 MtrunA17_Chr1g0207861 29.830 352 204 14 3 324 127 465 5.04e-33 127
Msa1049960 MtrunA17_Chr7g0243871 34.783 207 116 4 138 325 264 470 6.23e-33 127
Msa1049960 MtrunA17_Chr6g0462521 27.193 342 210 9 4 323 122 446 7.71e-33 126
Msa1049960 MtrunA17_Chr5g0431441 26.765 340 225 7 3 324 129 462 8.27e-33 126
Msa1049960 MtrunA17_Chr5g0403641 32.547 212 118 6 115 304 268 476 3.99e-32 125
Msa1049960 MtrunA17_Chr6g0454371 37.143 175 100 4 160 328 1 171 4.67e-32 117
Msa1049960 MtrunA17_Chr6g0462531 28.909 339 204 12 4 317 127 453 6.69e-32 124
Msa1049960 MtrunA17_Chr2g0307961 27.961 304 180 8 50 324 172 465 1.13e-31 123
Msa1049960 MtrunA17_Chr4g0072761 32.558 215 135 4 113 324 242 449 1.27e-31 123
Msa1049960 MtrunA17_Chr7g0265101 33.333 222 125 7 123 324 265 483 1.37e-31 123
Msa1049960 MtrunA17_Chr5g0431401 28.080 349 207 12 1 325 118 446 1.40e-31 123
Msa1049960 MtrunA17_Chr8g0339631 27.714 350 216 12 4 323 122 464 1.52e-31 123
Msa1049960 MtrunA17_Chr5g0431371 26.801 347 214 9 1 325 118 446 1.85e-31 122
Msa1049960 MtrunA17_Chr5g0442561 29.066 289 161 11 81 328 188 473 1.93e-31 122
Msa1049960 MtrunA17_Chr4g0060511 29.924 264 152 7 95 325 222 485 2.23e-31 123
Msa1049960 MtrunA17_Chr4g0044521 30.466 279 159 10 78 324 188 463 4.45e-31 122
Msa1049960 MtrunA17_Chr5g0419761 32.710 214 120 4 116 305 246 459 5.05e-31 122
Msa1049960 MtrunA17_Chr8g0336261 39.716 141 78 2 160 297 1 137 5.95e-31 114
Msa1049960 MtrunA17_Chr7g0243771 34.434 212 120 4 133 325 262 473 6.30e-31 121
Msa1049960 MtrunA17_Chr5g0431421 27.841 352 204 12 1 325 118 446 6.36e-31 121
Msa1049960 MtrunA17_Chr7g0265151 30.702 228 133 6 120 324 255 480 1.05e-30 121
Msa1049960 MtrunA17_Chr7g0243931 33.333 207 119 4 138 325 282 488 1.43e-30 120
Msa1049960 MtrunA17_Chr4g0066261 32.365 241 131 8 116 325 240 479 1.66e-30 120
Msa1049960 MtrunA17_Chr5g0432731 31.518 257 149 8 91 328 49 297 1.76e-30 117
Msa1049960 MtrunA17_Chr7g0265051 31.356 236 135 8 116 324 246 481 2.89e-30 120
Msa1049960 MtrunA17_Chr5g0429711 28.779 344 210 13 5 325 128 459 3.42e-30 119
Msa1049960 MtrunA17_Chr5g0442541 25.698 358 226 10 5 328 115 466 3.67e-30 119
Msa1049960 MtrunA17_Chr7g0243801 34.434 212 120 4 133 325 263 474 3.82e-30 119
Msa1049960 MtrunA17_Chr7g0235051 34.158 202 114 5 138 320 245 446 4.10e-30 119
Msa1049960 MtrunA17_Chr7g0243711 34.300 207 117 5 138 325 108 314 6.81e-30 116
Msa1049960 MtrunA17_Chr4g0014061 29.832 238 140 6 116 326 234 471 7.25e-30 118
Msa1049960 MtrunA17_Chr5g0442581 30.252 238 142 5 115 328 240 477 8.48e-30 119
Msa1049960 MtrunA17_Chr5g0431361 27.794 349 212 11 1 325 119 451 9.41e-30 118
Msa1049960 MtrunA17_Chr7g0265041 29.876 241 141 5 116 328 249 489 1.35e-29 118
Msa1049960 MtrunA17_Chr4g0072771 30.698 215 139 4 113 324 255 462 1.38e-29 117
Msa1049960 MtrunA17_Chr7g0243781 32.057 209 121 4 138 325 265 473 1.44e-29 117
Msa1049960 MtrunA17_Chr4g0011051 30.252 238 136 7 116 324 248 484 1.59e-29 117
Msa1049960 MtrunA17_Chr8g0366391 28.328 293 176 10 59 324 189 474 1.67e-29 117
Msa1049960 MtrunA17_Chr5g0442601 29.832 238 141 6 115 328 641 876 2.43e-29 118
Msa1049960 MtrunA17_Chr5g0442601 33.918 171 93 5 115 265 166 336 5.20e-24 102
Msa1049960 MtrunA17_Chr5g0409591 33.824 204 113 6 117 299 253 455 3.22e-29 117
Msa1049960 MtrunA17_Chr5g0442511 28.814 236 142 7 115 326 259 492 3.25e-29 117
Msa1049960 MtrunA17_Chr5g0448521 24.451 364 225 12 5 328 115 468 3.29e-29 116
Msa1049960 MtrunA17_Chr5g0419771 30.290 241 140 7 116 328 273 513 4.19e-29 117
Msa1049960 MtrunA17_Chr8g0361371 26.050 357 215 14 4 324 124 467 4.54e-29 116
Msa1049960 MtrunA17_Chr2g0329111 30.638 235 140 5 116 327 245 479 5.18e-29 116
Msa1049960 MtrunA17_Chr1g0173121 29.515 227 138 5 115 324 238 459 6.10e-29 115
Msa1049960 MtrunA17_Chr5g0440421 24.654 361 230 11 1 325 137 491 8.23e-29 115
Msa1049960 MtrunA17_Chr2g0294931 31.925 213 121 5 137 325 267 479 8.62e-29 115
Msa1049960 MtrunA17_Chr7g0243951 33.816 207 117 5 138 325 276 481 8.79e-29 115
Msa1049960 MtrunA17_Chr4g0066221 30.469 256 145 9 102 325 224 478 9.18e-29 115
Msa1049960 MtrunA17_Chr1g0179901 29.339 242 142 6 116 328 253 494 9.55e-29 115
Msa1049960 MtrunA17_Chr1g0159551 29.515 227 139 5 115 324 234 456 1.23e-28 115
Msa1049960 MtrunA17_Chr5g0429681 28.363 342 216 10 5 325 164 497 1.36e-28 115
Msa1049960 MtrunA17_Chr5g0442491 28.514 249 151 7 104 328 230 475 1.59e-28 114
Msa1049960 MtrunA17_Chr4g0044481 34.804 204 116 7 79 266 194 396 2.69e-28 113
Msa1049960 MtrunA17_Chr7g0243911 32.828 198 117 4 124 305 8 205 3.06e-28 109
Msa1049960 MtrunA17_Chr8g0382021 30.472 233 131 7 115 324 261 485 3.07e-28 114
Msa1049960 MtrunA17_Chr5g0442521 26.613 248 155 4 104 326 229 474 3.13e-28 114
Msa1049960 MtrunA17_Chr7g0265111 30.453 243 139 8 116 328 274 516 3.41e-28 114
Msa1049960 MtrunA17_Chr3g0106251 30.612 196 123 3 136 324 101 290 4.49e-28 111
Msa1049960 MtrunA17_Chr3g0106231 26.000 350 209 9 3 324 121 448 6.21e-28 113
Msa1049960 MtrunA17_Chr8g0334831 24.590 366 218 13 4 324 123 475 7.20e-28 113
Msa1049960 MtrunA17_Chr4g0066171 31.349 252 144 9 102 325 224 474 7.20e-28 113
Msa1049960 MtrunA17_Chr3g0079711 32.065 184 103 6 163 324 2 185 7.48e-28 107
Msa1049960 MtrunA17_Chr7g0243851 32.367 207 121 4 138 325 234 440 8.42e-28 112
Msa1049960 MtrunA17_Chr4g0066151 28.906 256 149 8 102 325 223 477 8.62e-28 112
Msa1049960 MtrunA17_Chr4g0066201 31.349 252 144 9 102 325 222 472 1.04e-27 112
Msa1049960 MtrunA17_Chr4g0066131 28.125 256 153 7 102 326 218 473 1.70e-27 112
Msa1049960 MtrunA17_Chr4g0066281 26.590 346 213 11 16 325 124 464 3.41e-27 111
Msa1049960 MtrunA17_Chr7g0243761 32.990 194 108 4 138 325 275 452 5.66e-27 110
Msa1049960 MtrunA17_Chr2g0302991 31.197 234 138 6 111 324 229 459 7.96e-27 110
Msa1049960 MtrunA17_Chr6g0463861 29.577 213 123 5 138 324 259 470 1.47e-26 109
Msa1049960 MtrunA17_Chr4g0044501 30.222 225 141 4 116 324 248 472 2.13e-26 108
Msa1049960 MtrunA17_Chr7g0243861 32.367 207 121 4 138 325 279 485 3.15e-26 108
Msa1049960 MtrunA17_Chr2g0294941 30.041 243 138 7 102 313 124 365 3.66e-26 107
Msa1049960 MtrunA17_Chr7g0218311 27.273 253 155 5 102 325 229 481 5.11e-26 107
Msa1049960 MtrunA17_Chr6g0463851 28.235 255 152 5 102 325 226 480 5.42e-26 107
Msa1049960 MtrunA17_Chr5g0410941 30.047 213 125 5 137 325 275 487 5.85e-26 107
Msa1049960 MtrunA17_Chr6g0454251 27.306 271 168 8 1 245 128 395 7.25e-26 106
Msa1049960 MtrunA17_Chr8g0370941 31.004 229 117 8 116 308 243 466 7.76e-26 107
Msa1049960 MtrunA17_Chr2g0302961 30.342 234 140 6 111 324 232 462 9.31e-26 107
Msa1049960 MtrunA17_Chr5g0428081 30.357 224 130 7 126 325 256 477 9.64e-26 107
Msa1049960 MtrunA17_Chr8g0374971 28.627 255 151 7 102 325 224 478 2.09e-25 106
Msa1049960 MtrunA17_Chr8g0369341 28.879 232 150 8 104 324 238 465 2.10e-24 103
Msa1049960 MtrunA17_Chr8g0374941 29.752 242 137 9 116 325 1175 1415 3.21e-24 103
Msa1049960 MtrunA17_Chr8g0374941 28.821 229 130 8 116 312 237 464 7.57e-23 99.8
Msa1049960 MtrunA17_Chr8g0374941 28.372 215 123 6 116 299 702 916 8.01e-20 90.5
Msa1049960 MtrunA17_Chr5g0420801 28.571 224 147 7 112 325 236 456 3.62e-24 102
Msa1049960 MtrunA17_Chr8g0374901 26.220 328 200 10 35 325 154 476 3.69e-24 102
Msa1049960 MtrunA17_Chr8g0374931 25.634 355 229 10 3 325 128 479 4.51e-24 102
Msa1049960 MtrunA17_Chr8g0361411 30.952 210 134 6 122 324 245 450 9.58e-24 101
Msa1049960 MtrunA17_Chr5g0401851 25.485 361 221 15 3 324 129 480 1.48e-23 100
Msa1049960 MtrunA17_Chr4g0029131 28.049 328 209 11 2 308 119 440 1.52e-23 101
Msa1049960 MtrunA17_Chr2g0294921 30.806 211 122 6 138 324 417 627 1.90e-23 100
Msa1049960 MtrunA17_Chr8g0337381 37.815 119 73 1 206 323 3 121 1.93e-23 94.0
Msa1049960 MtrunA17_Chr4g0042931 31.579 228 133 7 115 325 240 461 2.10e-23 100
Msa1049960 MtrunA17_Chr7g0243611 35.556 135 81 2 138 266 136 270 2.76e-23 97.8
Msa1049960 MtrunA17_Chr8g0355221 25.138 362 220 13 3 324 133 483 4.64e-23 99.4
Msa1049960 MtrunA17_Chr1g0165701 25.419 358 221 13 3 324 133 480 4.84e-23 99.4
Msa1049960 MtrunA17_Chr8g0350881 28.049 246 136 6 116 325 238 478 7.22e-23 99.0
Msa1049960 MtrunA17_Chr1g0207881 38.806 134 75 4 198 324 248 381 7.33e-23 98.2
Msa1049960 MtrunA17_Chr8g0367221 31.658 199 125 6 139 327 270 467 1.22e-22 99.0
Msa1049960 MtrunA17_Chr8g0367221 33.684 190 116 6 140 320 1548 1736 3.25e-22 97.8
Msa1049960 MtrunA17_Chr8g0367221 30.841 214 128 9 114 313 1033 1240 5.12e-20 91.3
Msa1049960 MtrunA17_Chr4g0042891 32.195 205 116 4 137 324 264 462 1.29e-22 98.2
Msa1049960 MtrunA17_Chr2g0283041 33.333 162 102 4 138 293 256 417 2.18e-22 97.4
Msa1049960 MtrunA17_Chr5g0416741 23.889 360 227 12 3 325 132 481 2.58e-22 97.4
Msa1049960 MtrunA17_Chr4g0040711 31.844 179 112 4 140 308 261 439 5.24e-22 96.3
Msa1049960 MtrunA17_Chr6g0454231 37.168 113 67 1 203 315 94 202 6.58e-22 95.9
Msa1049960 MtrunA17_Chr7g0243811 31.183 186 109 6 95 265 192 373 1.19e-21 94.7
Msa1049960 MtrunA17_Chr4g0040691 31.285 179 113 4 140 308 261 439 2.05e-21 94.4
Msa1049960 MtrunA17_Chr6g0463891 23.324 343 227 9 3 317 132 466 1.01e-20 92.8
Msa1049960 MtrunA17_Chr4g0029151 32.065 184 110 6 140 308 265 448 1.16e-20 92.4
Msa1049960 MtrunA17_Chr7g0232351 36.486 148 75 5 113 244 234 378 1.50e-20 91.3
Msa1049960 MtrunA17_Chr8g0336251 30.870 230 133 7 95 304 216 439 1.38e-19 89.4
Msa1049960 MtrunA17_Chr7g0241781 34.228 149 86 4 112 255 215 356 3.52e-19 87.8
Msa1049960 MtrunA17_Chr6g0482061 29.665 209 133 5 111 306 251 458 3.73e-19 87.8
Msa1049960 MtrunA17_Chr8g0336321 30.870 230 133 7 95 304 216 439 3.77e-19 87.8
Msa1049960 MtrunA17_Chr7g0241801 27.149 221 144 8 112 326 215 424 3.99e-19 87.8
Msa1049960 MtrunA17_Chr5g0427571 29.915 234 134 7 95 304 46 273 5.86e-19 85.9
Msa1049960 MtrunA17_Chr1g0196851 25.223 337 209 13 3 308 156 480 2.12e-18 85.9
Msa1049960 MtrunA17_Chr8g0357361 32.168 143 92 4 137 275 117 258 9.20e-18 81.6
Msa1049960 MtrunA17_Chr2g0319761 34.118 170 105 5 139 301 258 427 3.80e-17 82.0
Msa1049960 MtrunA17_Chr2g0278721 26.100 341 225 9 5 325 638 971 8.58e-17 81.3
Msa1049960 MtrunA17_Chr2g0278721 28.723 188 120 6 140 322 274 452 2.50e-12 67.8
Msa1049960 MtrunA17_Chr5g0431431 34.667 150 87 2 138 287 206 344 9.52e-17 80.1
Msa1049960 MtrunA17_Chr4g0066141 32.847 137 78 3 203 325 213 349 1.21e-16 79.7
Msa1049960 MtrunA17_Chr2g0319751 32.000 200 124 7 117 309 718 912 1.74e-16 80.5
Msa1049960 MtrunA17_Chr2g0319791 32.402 179 114 5 138 309 257 435 2.73e-16 79.3
Msa1049960 MtrunA17_Chr3g0092031 30.000 190 115 7 140 322 6 184 1.10e-15 74.7
Msa1049960 MtrunA17_Chr7g0250021 28.986 207 122 7 1 191 120 317 1.57e-15 76.3
Msa1049960 MtrunA17_Chr5g0416821 27.536 207 117 6 138 325 279 471 1.68e-15 77.0
Msa1049960 MtrunA17_Chr7g0243731 42.466 73 41 1 203 274 6 78 2.55e-15 70.1
Msa1049960 MtrunA17_Chr4g0069611 29.114 158 108 3 140 294 269 425 4.07e-15 75.9
Msa1049960 MtrunA17_Chr7g0231631 25.000 248 147 7 103 325 24 257 3.11e-14 71.6
Msa1049960 MtrunA17_Chr2g0319731 32.418 182 111 6 139 308 275 456 1.86e-13 70.9
Msa1049960 MtrunA17_Chr6g0466841 27.128 188 123 5 140 322 272 450 2.92e-13 70.1
Msa1049960 MtrunA17_Chr6g0466831 27.128 188 123 5 140 322 272 450 5.05e-13 69.7
Msa1049960 MtrunA17_Chr6g0453981 40.000 90 46 2 104 185 116 205 1.23e-12 66.6
Msa1049960 MtrunA17_Chr2g0278741 29.255 188 119 6 140 322 356 534 1.25e-12 68.6
Msa1049960 MtrunA17_Chr6g0464091 36.134 119 70 3 140 254 279 395 1.99e-12 67.8
Msa1049960 MtrunA17_Chr2g0319801 31.694 183 113 6 139 309 258 440 2.23e-12 67.4
Msa1049960 MtrunA17_Chr2g0302851 29.747 158 107 3 140 294 270 426 2.67e-12 67.4
Msa1049960 MtrunA17_Chr4g0039881 29.114 158 108 3 140 294 246 402 4.10e-12 66.6
Msa1049960 MtrunA17_Chr8g0334841 40.860 93 51 2 111 203 64 152 2.16e-11 61.6
Msa1049960 MtrunA17_Chr6g0454391 40.580 69 37 1 219 287 11 75 3.91e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1049960 AT3G02100.1 40.476 336 182 5 1 326 131 458 2.94e-92 283
Msa1049960 AT3G55700.1 34.911 338 192 9 7 328 126 451 2.66e-53 181
Msa1049960 AT1G22400.1 31.373 357 207 11 1 325 129 479 1.11e-50 175
Msa1049960 AT1G22340.1 31.831 355 208 12 1 325 129 479 3.17e-50 174
Msa1049960 AT1G22360.1 31.921 354 208 10 1 325 126 475 2.04e-49 172
Msa1049960 AT5G59590.1 40.639 219 117 5 115 325 234 447 2.08e-49 171
Msa1049960 AT1G22370.2 34.471 293 170 7 1 272 129 420 3.11e-49 171
Msa1049960 AT1G22380.1 31.831 355 207 13 1 325 129 478 4.25e-49 171
Msa1049960 AT3G22250.1 28.739 341 198 8 3 309 114 443 1.04e-47 167
Msa1049960 AT3G55710.1 33.724 341 198 10 7 328 124 455 1.97e-47 166
Msa1049960 AT1G78270.1 31.054 351 211 11 1 326 129 473 2.17e-47 166
Msa1049960 AT5G05880.1 38.813 219 122 4 116 326 233 447 4.14e-47 165
Msa1049960 AT3G21560.1 30.398 352 204 11 1 324 131 469 4.38e-47 166
Msa1049960 AT1G05675.1 30.925 346 211 9 1 325 112 450 7.89e-47 164
Msa1049960 AT3G46670.1 29.499 339 220 7 1 326 115 447 1.35e-46 164
Msa1049960 AT5G59580.1 33.803 284 166 8 57 325 169 445 2.91e-46 163
Msa1049960 AT3G11340.1 34.982 283 172 5 57 328 164 445 8.10e-46 161
Msa1049960 AT1G22360.2 31.624 351 201 10 1 325 126 463 8.97e-46 162
Msa1049960 AT1G05680.1 30.836 347 210 10 1 325 112 450 4.42e-45 159
Msa1049960 AT1G22370.1 35.391 243 137 5 50 272 8 250 6.70e-45 155
Msa1049960 AT3G46660.1 29.970 337 222 6 1 326 121 454 1.09e-44 159
Msa1049960 AT3G46680.1 32.313 294 175 9 49 325 161 447 1.66e-44 158
Msa1049960 AT3G46700.1 30.208 288 184 5 50 324 158 441 2.27e-44 157
Msa1049960 AT3G46650.1 30.421 309 201 6 31 328 128 433 1.08e-43 155
Msa1049960 AT5G38040.1 30.149 335 197 10 13 325 128 447 5.21e-43 154
Msa1049960 AT3G46720.1 30.678 339 208 8 1 326 115 439 1.47e-42 153
Msa1049960 AT5G05900.1 37.383 214 125 3 116 326 239 446 4.54e-42 151
Msa1049960 AT3G46690.1 33.840 263 152 7 80 325 193 450 1.69e-41 150
Msa1049960 AT2G31750.1 30.149 335 200 7 12 324 129 451 1.72e-41 150
Msa1049960 AT2G23260.1 29.023 348 207 11 4 325 118 451 1.79e-41 150
Msa1049960 AT2G31750.2 30.149 335 200 7 12 324 129 451 3.13e-41 150
Msa1049960 AT5G05870.1 30.742 283 178 6 57 325 174 452 3.96e-41 149
Msa1049960 AT5G38010.1 35.874 223 122 5 115 325 238 451 6.33e-41 149
Msa1049960 AT4G15500.1 30.398 352 202 13 3 325 123 460 8.21e-41 149
Msa1049960 AT4G15550.1 28.329 353 218 12 1 328 132 474 1.42e-40 148
Msa1049960 AT2G23250.1 31.399 293 180 8 50 325 145 433 2.13e-40 147
Msa1049960 AT2G43840.2 28.940 349 206 12 1 325 114 444 1.66e-39 145
Msa1049960 AT5G05860.1 29.706 340 215 8 2 325 114 445 2.15e-39 144
Msa1049960 AT3G16520.3 29.448 326 205 11 17 324 138 456 2.30e-39 144
Msa1049960 AT2G43840.1 29.226 349 205 12 1 325 114 444 2.55e-39 144
Msa1049960 AT2G30140.2 28.863 343 208 10 3 325 122 448 4.17e-39 144
Msa1049960 AT4G15480.1 29.480 346 214 13 3 325 138 476 4.92e-39 144
Msa1049960 AT2G26480.1 33.482 224 135 5 115 328 227 446 8.21e-39 143
Msa1049960 AT2G30140.1 28.696 345 207 11 3 325 122 449 1.17e-38 142
Msa1049960 AT5G05890.1 36.073 219 128 4 116 326 237 451 1.26e-38 142
Msa1049960 AT3G16520.2 30.380 316 192 12 17 311 138 446 1.37e-38 142
Msa1049960 AT3G16520.1 29.907 321 195 12 17 314 138 451 3.13e-38 141
Msa1049960 AT2G31790.1 28.612 353 211 9 1 324 113 453 3.37e-38 141
Msa1049960 AT4G15490.1 29.345 351 208 15 3 325 126 464 4.98e-38 141
Msa1049960 AT4G14090.1 33.333 240 151 6 95 325 214 453 1.46e-37 139
Msa1049960 AT2G15480.1 32.806 253 147 7 95 324 225 477 3.22e-35 134
Msa1049960 AT2G15490.1 31.599 269 154 8 83 324 212 477 3.75e-35 133
Msa1049960 AT2G43820.1 34.343 198 124 3 132 325 249 444 6.03e-35 132
Msa1049960 AT2G36780.1 34.632 231 125 7 116 320 251 481 1.49e-34 132
Msa1049960 AT2G36970.1 27.811 338 212 11 9 325 142 468 2.82e-34 131
Msa1049960 AT2G15490.3 31.698 265 156 8 83 324 212 474 3.57e-34 130
Msa1049960 AT4G01070.1 31.835 267 152 6 81 320 197 460 3.60e-34 130
Msa1049960 AT3G21790.1 28.169 355 214 9 5 324 127 475 4.23e-34 130
Msa1049960 AT1G01420.2 32.707 266 150 7 81 320 200 462 6.37e-34 130
Msa1049960 AT1G01420.1 32.707 266 150 7 81 320 197 459 6.53e-34 130
Msa1049960 AT2G36770.1 31.313 297 161 10 57 320 195 481 7.51e-34 130
Msa1049960 AT3G53160.1 31.095 283 148 11 72 328 222 483 9.22e-34 130
Msa1049960 AT2G36760.1 31.660 259 142 7 95 320 225 481 1.17e-33 129
Msa1049960 AT2G36750.1 34.764 233 122 8 116 320 246 476 1.43e-33 129
Msa1049960 AT4G15260.1 24.355 349 233 7 5 325 7 352 2.13e-33 126
Msa1049960 AT1G07250.1 28.274 336 222 8 6 324 136 469 3.36e-33 128
Msa1049960 AT2G30150.1 26.531 343 219 8 3 325 105 434 4.73e-33 127
Msa1049960 AT2G30150.2 26.531 343 219 8 3 325 121 450 7.56e-33 127
Msa1049960 AT2G15480.2 31.273 275 154 9 83 324 215 487 1.81e-32 126
Msa1049960 AT4G15280.1 26.571 350 225 9 5 325 125 471 2.00e-32 126
Msa1049960 AT2G36800.1 33.906 233 124 6 116 320 250 480 2.42e-32 126
Msa1049960 AT4G15280.2 26.571 350 225 9 5 325 157 503 2.79e-32 126
Msa1049960 AT2G29740.1 34.667 225 136 6 111 325 249 472 3.42e-32 125
Msa1049960 AT1G05560.1 25.000 348 222 8 1 324 116 448 5.28e-32 124
Msa1049960 AT2G28080.1 26.627 338 227 12 3 325 138 469 5.91e-32 124
Msa1049960 AT1G05560.2 25.000 348 222 8 1 324 166 498 1.14e-31 124
Msa1049960 AT3G50740.1 32.143 224 123 6 115 314 241 459 1.33e-31 124
Msa1049960 AT3G21780.1 26.361 349 226 7 5 324 119 465 1.82e-31 123
Msa1049960 AT4G34131.1 32.599 227 134 6 116 324 251 476 2.22e-30 120
Msa1049960 AT5G17050.1 26.250 320 220 7 16 325 141 454 4.18e-30 119
Msa1049960 AT1G01390.1 34.934 229 128 6 111 320 234 460 6.36e-30 119
Msa1049960 AT1G01390.2 35.526 228 126 7 111 319 251 476 6.71e-30 119
Msa1049960 AT4G34138.1 30.453 243 148 6 95 316 225 467 7.71e-30 119
Msa1049960 AT4G36770.1 33.971 209 113 6 115 305 237 438 1.55e-29 117
Msa1049960 AT5G17040.2 29.464 224 144 6 112 328 122 338 2.30e-29 115
Msa1049960 AT2G36790.1 33.906 233 124 6 116 320 250 480 3.53e-29 117
Msa1049960 AT2G18560.1 32.195 205 116 6 115 303 150 347 4.12e-29 115
Msa1049960 AT1G05530.1 27.333 300 180 9 57 324 158 451 4.73e-29 116
Msa1049960 AT1G07260.1 30.088 226 147 5 111 325 244 469 4.95e-29 116
Msa1049960 AT4G34135.1 31.496 254 149 8 95 324 226 478 5.32e-29 116
Msa1049960 AT5G17040.1 28.700 223 147 5 112 328 224 440 9.06e-29 115
Msa1049960 AT3G21800.1 27.917 240 148 4 110 325 235 473 9.37e-29 115
Msa1049960 AT5G12890.1 26.243 362 219 10 1 328 135 482 1.47e-28 115
Msa1049960 AT5G26310.1 32.075 212 116 6 115 305 236 440 1.90e-28 115
Msa1049960 AT3G53150.1 28.514 249 139 5 116 325 259 507 3.81e-28 114
Msa1049960 AT1G24100.1 28.319 226 141 6 116 324 234 455 4.27e-28 114
Msa1049960 AT5G66690.1 31.754 211 118 5 115 305 236 440 6.26e-28 113
Msa1049960 AT3G21750.1 24.581 358 223 11 5 324 117 465 8.34e-28 113
Msa1049960 AT5G17030.1 28.507 221 144 6 112 325 240 453 9.33e-28 112
Msa1049960 AT3G21760.1 26.611 357 219 10 5 325 129 478 9.48e-28 113
Msa1049960 AT2G18570.1 30.769 208 115 6 115 303 240 437 1.97e-27 112
Msa1049960 AT2G29750.1 28.743 334 208 11 5 317 138 462 7.05e-27 110
Msa1049960 AT1G73880.1 29.167 216 145 3 115 324 250 463 1.08e-26 110
Msa1049960 AT1G07240.1 25.215 349 222 12 5 324 134 472 4.47e-26 108
Msa1049960 AT2G29730.1 25.680 331 212 10 16 324 141 459 5.49e-26 108
Msa1049960 AT1G10400.1 31.839 223 139 7 112 325 242 460 9.49e-26 107
Msa1049960 AT2G29710.1 26.800 250 160 7 95 325 215 460 1.66e-25 106
Msa1049960 AT5G37950.2 38.060 134 79 1 115 244 204 337 2.20e-25 104
Msa1049960 AT5G37950.1 38.060 134 79 1 115 244 210 343 2.28e-25 104
Msa1049960 AT5G03490.1 29.907 214 140 5 116 324 251 459 2.71e-25 105
Msa1049960 AT2G16890.2 26.100 341 208 11 17 320 127 460 6.70e-25 105
Msa1049960 AT5G14860.1 27.003 337 198 12 17 319 133 455 2.01e-24 103
Msa1049960 AT1G30530.1 23.881 335 233 8 3 325 124 448 6.08e-24 102
Msa1049960 AT2G16890.3 25.902 305 186 10 17 288 127 424 1.60e-22 97.8
Msa1049960 AT2G22930.1 25.079 315 209 10 3 304 118 418 5.20e-22 96.3
Msa1049960 AT5G49690.1 30.275 218 139 7 114 325 242 452 7.57e-22 96.3
Msa1049960 AT5G53990.1 28.509 228 144 8 112 325 220 442 1.90e-21 94.7
Msa1049960 AT1G51210.1 29.534 193 127 5 116 305 246 432 2.20e-21 94.7
Msa1049960 AT4G27560.1 25.342 292 193 8 3 282 119 397 8.58e-21 93.2
Msa1049960 AT4G27570.1 30.435 184 119 4 112 290 226 405 1.32e-20 92.4
Msa1049960 AT1G06000.1 31.658 199 121 6 140 324 233 430 2.35e-20 91.7
Msa1049960 AT1G64920.1 29.741 232 140 8 112 325 220 446 2.86e-20 91.7
Msa1049960 AT5G65550.1 27.895 190 124 7 114 296 245 428 2.88e-20 91.7
Msa1049960 AT5G54010.1 30.000 190 119 6 112 294 226 408 4.36e-20 90.9
Msa1049960 AT1G64910.1 27.027 222 145 7 117 325 225 442 1.19e-18 86.7
Msa1049960 AT4G09500.2 28.230 209 132 7 112 308 220 422 3.99e-18 85.1
Msa1049960 AT4G09500.1 28.902 173 113 5 146 308 225 397 2.91e-17 82.4
Msa1049960 AT1G50580.1 29.064 203 132 6 112 304 219 419 1.67e-16 80.5
Msa1049960 AT3G29630.1 28.922 204 132 7 112 304 220 421 2.13e-16 80.1
Msa1049960 AT3G29630.2 28.814 177 115 5 139 304 219 395 3.53e-16 79.3
Msa1049960 AT2G22590.1 27.168 173 118 5 140 305 274 445 7.07e-15 75.5
Msa1049960 AT5G54060.1 27.397 219 145 6 117 324 248 463 8.34e-14 72.4

Find 99 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCCAATTGGTAGGAATTT+TGG 0.185322 7_2:+13680885 None:intergenic
GCTTGTTTCATTAGTCATTT+TGG 0.200655 7_2:-13680552 Msa1049960:CDS
TATTATTGTTATCTTCAATA+TGG 0.203724 7_2:-13682824 Msa1049960:exon
GATACCCATTTGATTGAAAA+TGG 0.221135 7_2:+13683195 None:intergenic
CTAATGTTAATTCTTTAAAT+TGG 0.232227 7_2:+13680727 None:intergenic
GAATTAGACAAGGATGAAAA+TGG 0.235869 7_2:-13680414 Msa1049960:CDS
AACAATAATATTTCTATTGT+TGG 0.251594 7_2:-13683040 Msa1049960:five_prime_UTR
GACTGGCTCAGCAACTTCTT+TGG 0.255726 7_2:-13682749 Msa1049960:CDS
TGATCACTTCTATCATCTTC+AGG 0.269767 7_2:+13682947 None:intergenic
GAGCTGAATTTCTTGATCTT+TGG 0.276157 7_2:+13681073 None:intergenic
ATCTCCAAAACTTTATCAAT+TGG 0.282729 7_2:-13680260 Msa1049960:CDS
TTAATTCTTTAAATTGGTTT+TGG 0.295458 7_2:+13680733 None:intergenic
CAATTTAAAGAATTAACATT+AGG 0.300426 7_2:-13680726 Msa1049960:CDS
GGACACAACTTAGGAATTAA+AGG 0.311420 7_2:-13682784 Msa1049960:CDS
TCGCCCAATTGATAAAGTTT+TGG 0.315630 7_2:+13680256 None:intergenic
GTGTCCAGCTTTGGCATATT+CGG 0.328220 7_2:+13681047 None:intergenic
CTTCAATATGGGATGGGCTT+TGG 0.339992 7_2:-13682812 Msa1049960:exon
ACTCCATCATCAATTAGTTC+AGG 0.341605 7_2:+13682709 None:intergenic
AATGCTTTATAGTACTTGTT+TGG 0.355564 7_2:-13680227 Msa1049960:three_prime_UTR
CTGGTATACCTTTCTTGTGT+TGG 0.360564 7_2:-13680500 Msa1049960:CDS
GGTTGGAATTCTACTATAGA+AGG 0.361518 7_2:-13680531 Msa1049960:CDS
CCACCAATGTCCTAACTTCA+TGG 0.361640 7_2:+13680956 None:intergenic
CTTCGATAGTTTGGCAGTAA+TGG 0.369598 7_2:-13680757 Msa1049960:CDS
TAACATCTTCCTATGAGCTT+AGG 0.376832 7_2:+13682878 None:intergenic
TGTCACACTCCCAGATGGTT+TGG 0.377384 7_2:-13682972 Msa1049960:five_prime_UTR
ATATGTTTCCTTCGATAGTT+TGG 0.383043 7_2:-13680766 Msa1049960:CDS
AATTTAAAGAATTAACATTA+GGG 0.385494 7_2:-13680725 Msa1049960:CDS
ACTATAGAAGGTGTATATTC+TGG 0.386931 7_2:-13680519 Msa1049960:CDS
AGTGATCTTGCAGCCATGTT+TGG 0.392435 7_2:+13683099 None:intergenic
ATTATTGTTATCTTCAATAT+GGG 0.398070 7_2:-13682823 Msa1049960:exon
TCTCCAAAACTTTATCAATT+GGG 0.415286 7_2:-13680259 Msa1049960:CDS
TTAGTTCCAAGGAACTCATC+AGG 0.417896 7_2:+13680630 None:intergenic
AACATCTTCCTATGAGCTTA+GGG 0.418846 7_2:+13682879 None:intergenic
CCTTTGCTCCCTAAGCTCAT+AGG 0.420467 7_2:-13682887 Msa1049960:five_prime_UTR
TCTTCAGGTTCCAAACCATC+TGG 0.420787 7_2:+13682962 None:intergenic
ATGGGATGGGCTTTGGAAGT+TGG 0.427573 7_2:-13682805 Msa1049960:CDS
ACAGCAACAAAAGTTCATTC+TGG 0.432292 7_2:-13680845 Msa1049960:CDS
TAAAGGCAAGATTGTTAGTT+GGG 0.434482 7_2:-13680610 Msa1049960:CDS
GCTTTATAGTACTTGTTTGG+TGG 0.436660 7_2:-13680224 Msa1049960:three_prime_UTR
ATATGACCTGGGACTGGGTA+TGG 0.441678 7_2:+13683154 None:intergenic
TCCATCATCAATGGGCCAAT+TGG 0.441886 7_2:+13680873 None:intergenic
TGTGGATGAATTCTGTGTTA+AGG 0.462995 7_2:+13683074 None:intergenic
GGAATTATATGACCTGGGAC+TGG 0.463671 7_2:+13683148 None:intergenic
AAGACATGACTTCCGTAGAT+TGG 0.464686 7_2:-13680818 Msa1049960:CDS
ATAAATTGATCAGTTGCAAA+TGG 0.468563 7_2:+13680477 None:intergenic
TTGGAAGTTGGACACAACTT+AGG 0.473287 7_2:-13682793 Msa1049960:CDS
GAGATGCAGACCATGAAGTT+AGG 0.473842 7_2:-13680966 Msa1049960:CDS
TCACCAAAATTCCTACCAAT+TGG 0.474845 7_2:-13680888 Msa1049960:CDS
ACCAATTGGCCCATTGATGA+TGG 0.475756 7_2:-13680874 Msa1049960:CDS
AATTAGACAAGGATGAAAAT+GGG 0.477251 7_2:-13680413 Msa1049960:CDS
GAATTATATGACCTGGGACT+GGG 0.477630 7_2:+13683149 None:intergenic
CTCCATCATCAATTAGTTCA+GGG 0.482623 7_2:+13682710 None:intergenic
AAAGGAAGAGATAAAGAAGA+AGG 0.488960 7_2:-13680382 Msa1049960:CDS
CTAAAGGCAAGATTGTTAGT+TGG 0.489953 7_2:-13680611 Msa1049960:CDS
GGACGAACAATCCAAAGAAA+AGG 0.490004 7_2:+13680684 None:intergenic
TTGTCAAAGGTCCGCTGCCA+TGG 0.490647 7_2:+13681014 None:intergenic
GCATACCCTGATGAGTTCCT+TGG 0.491158 7_2:-13680636 Msa1049960:CDS
TGAAAATGGGCTAGTACTAA+AGG 0.494951 7_2:-13680400 Msa1049960:CDS
AGAAAGATCATTGAAACTAA+AGG 0.497391 7_2:-13680328 Msa1049960:CDS
TTGTTATCTTCAATATGGGA+TGG 0.498204 7_2:-13682819 Msa1049960:exon
TGTTATCTTCAATATGGGAT+GGG 0.499609 7_2:-13682818 Msa1049960:exon
CAATCTTGCCTTTAGTTCCA+AGG 0.501533 7_2:+13680619 None:intergenic
CTCTCCGAATATGCCAAAGC+TGG 0.509580 7_2:-13681051 Msa1049960:CDS
GATGAGTTCCTTGGAACTAA+AGG 0.522424 7_2:-13680627 Msa1049960:CDS
GGAAGAGATAAAGAAGAAGG+TGG 0.522824 7_2:-13680379 Msa1049960:CDS
AAGAAGGTGGAACAATTGCT+TGG 0.525033 7_2:-13680366 Msa1049960:CDS
ATTTGTGATGTGTGGCAGCT+TGG 0.528140 7_2:-13680441 Msa1049960:CDS
TTGAATAACATAGAGGAAGA+TGG 0.533328 7_2:-13680297 Msa1049960:CDS
TTTACCTTGTTGTCATTACT+CGG 0.537253 7_2:+13680663 None:intergenic
ATCAAATAAGATCTTGTCAA+AGG 0.538011 7_2:+13681001 None:intergenic
GCAAATGGCCAACACAAGAA+AGG 0.540571 7_2:+13680492 None:intergenic
CTAATGAAACAAGCTATAGC+AGG 0.547241 7_2:+13680561 None:intergenic
GAAACATATACGACAGATTG+AGG 0.549069 7_2:+13680780 None:intergenic
ATCCCTGAACTAATTGATGA+TGG 0.549637 7_2:-13682712 Msa1049960:CDS
GTTATTCCATACCCAGTCCC+AGG 0.551303 7_2:-13683160 Msa1049960:five_prime_UTR
CCATGAAGTTAGGACATTGG+TGG 0.558698 7_2:-13680956 Msa1049960:CDS
ATGAGGGGAATTATATGACC+TGG 0.561061 7_2:+13683142 None:intergenic
TTGCTTATCTAGCCAATCTA+CGG 0.564554 7_2:+13680806 None:intergenic
AACATGACATAATTGCATGA+GGG 0.573622 7_2:+13683126 None:intergenic
CTTCAGGTTCCAAACCATCT+GGG 0.574566 7_2:+13682963 None:intergenic
CCTATGAGCTTAGGGAGCAA+AGG 0.581321 7_2:+13682887 None:intergenic
TATGGAATAACAAGAAAGTG+AGG 0.582006 7_2:+13683172 None:intergenic
AACTTTGTCACACTCCCAGA+TGG 0.588603 7_2:-13682977 Msa1049960:five_prime_UTR
TAGTTCCAAGGAACTCATCA+GGG 0.590212 7_2:+13680631 None:intergenic
TCATCAATGGGCCAATTGGT+AGG 0.594029 7_2:+13680877 None:intergenic
AAACATGACATAATTGCATG+AGG 0.596705 7_2:+13683125 None:intergenic
ACATGACATAATTGCATGAG+GGG 0.599256 7_2:+13683127 None:intergenic
GATGGAGTAATTGATTCAGC+AGG 0.610610 7_2:-13682694 Msa1049960:intron
AGACCATGAAGTTAGGACAT+TGG 0.627911 7_2:-13680959 Msa1049960:CDS
GTTAACATTGAATAACATAG+AGG 0.632407 7_2:-13680304 Msa1049960:CDS
TGAGGGGAATTATATGACCT+GGG 0.632511 7_2:+13683143 None:intergenic
CATTACTGCCAAACTATCGA+AGG 0.632928 7_2:+13680758 None:intergenic
ATGAGCTTAGGGAGCAAAGG+AGG 0.646551 7_2:+13682890 None:intergenic
TGAAACAAGCTATAGCAGGA+TGG 0.655376 7_2:+13680565 None:intergenic
GCTTGGATTTGAATTAGACA+AGG 0.655978 7_2:-13680424 Msa1049960:CDS
ATGGAATAACAAGAAAGTGA+GGG 0.656547 7_2:+13683173 None:intergenic
AGTCATATATTTGTGATGTG+TGG 0.667004 7_2:-13680449 Msa1049960:CDS
TCGTCCGAGTAATGACAACA+AGG 0.724446 7_2:-13680667 Msa1049960:CDS
ACATATACGACAGATTGAGG+CGG 0.741046 7_2:+13680783 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAATTAATTAAATT+AGG - chr7_2:13681525-13681544 Msa1049960:intron 0.0%
!! AAAATCTTATAAAAAAAAGT+TGG + chr7_2:13681203-13681222 None:intergenic 10.0%
!!! CTATATATATTGATTTAAAA+CGG - chr7_2:13681863-13681882 Msa1049960:intron 10.0%
!!! TGATTTAATTTATATATTAC+AGG - chr7_2:13682276-13682295 Msa1049960:intron 10.0%
!! AATTTAAAGAATTAACATTA+GGG - chr7_2:13682655-13682674 Msa1049960:intron 10.0%
!!! AACAATAATATTTCTATTGT+TGG - chr7_2:13680340-13680359 Msa1049960:CDS 15.0%
!! TATTATTGTTATCTTCAATA+TGG - chr7_2:13680556-13680575 Msa1049960:CDS 15.0%
!! ATTATTGTTATCTTCAATAT+GGG - chr7_2:13680557-13680576 Msa1049960:CDS 15.0%
!!! TGTTAATTGTTTTGTTATTT+TGG - chr7_2:13680727-13680746 Msa1049960:CDS 15.0%
!! ATTAATATTGAAACTCATTT+GGG + chr7_2:13681085-13681104 None:intergenic 15.0%
!! TATTAATATTGAAACTCATT+TGG + chr7_2:13681086-13681105 None:intergenic 15.0%
!!! TATAAGATTTTCCTTTTTTA+AGG - chr7_2:13681212-13681231 Msa1049960:intron 15.0%
!! TCTTATAAAATCCTTAAAAA+AGG + chr7_2:13681226-13681245 None:intergenic 15.0%
!! AATAAATAAGAAAAAACTTG+AGG + chr7_2:13681448-13681467 None:intergenic 15.0%
!!! TGTAAAAATATGATTTTACT+TGG - chr7_2:13681611-13681630 Msa1049960:intron 15.0%
!!! TTAATTCTTTAAATTGGTTT+TGG + chr7_2:13682650-13682669 None:intergenic 15.0%
!! CTAATGTTAATTCTTTAAAT+TGG + chr7_2:13682656-13682675 None:intergenic 15.0%
!! CAATTTAAAGAATTAACATT+AGG - chr7_2:13682654-13682673 Msa1049960:intron 15.0%
!!! TATTGTTGTTGATTTTTTTG+TGG + chr7_2:13680327-13680346 None:intergenic 20.0%
!!! ATTTTTGAAAATAGTCAAAG+TGG + chr7_2:13680766-13680785 None:intergenic 20.0%
!!! ACGTTTTTTTTTTTTACCAA+TGG + chr7_2:13681380-13681399 None:intergenic 20.0%
!! TTGGTAAAAAAAAAAAACGT+AGG - chr7_2:13681380-13681399 Msa1049960:intron 20.0%
!! TATACAAAATTATTCAATGC+TGG - chr7_2:13681903-13681922 Msa1049960:intron 20.0%
!!! GAATTAAAGGTGTTTTTCTT+TGG - chr7_2:13680609-13680628 Msa1049960:CDS 25.0%
!!! TTTTGTTATTTTGGTACAAC+TGG - chr7_2:13680736-13680755 Msa1049960:CDS 25.0%
! TTATACATATGGGTAAAGTT+TGG - chr7_2:13680806-13680825 Msa1049960:CDS 25.0%
!!! TTTTTAAAAAAACTCGGTTC+TGG - chr7_2:13680884-13680903 Msa1049960:CDS 25.0%
!!! TAAAAAAAAGTTGGCTTTGA+TGG + chr7_2:13681194-13681213 None:intergenic 25.0%
!! TTACTTGGATTTTATTACAG+AGG - chr7_2:13681626-13681645 Msa1049960:intron 25.0%
!! TACTTGGATTTTATTACAGA+GGG - chr7_2:13681627-13681646 Msa1049960:intron 25.0%
! CATTACAACTAATTACAATG+TGG - chr7_2:13681781-13681800 Msa1049960:intron 25.0%
! AATATATATAGCCTCAAACA+TGG + chr7_2:13681854-13681873 None:intergenic 25.0%
! ACATGAAAATAGTTCTTTGA+AGG - chr7_2:13682170-13682189 Msa1049960:intron 25.0%
! AGTAATTAAATGAGAATCCA+AGG + chr7_2:13682225-13682244 None:intergenic 25.0%
! ATCAAATAAGATCTTGTCAA+AGG + chr7_2:13682382-13682401 None:intergenic 25.0%
! ATAAATTGATCAGTTGCAAA+TGG + chr7_2:13682906-13682925 None:intergenic 25.0%
! AATTAGACAAGGATGAAAAT+GGG - chr7_2:13682967-13682986 Msa1049960:five_prime_UTR 25.0%
! AGAAAGATCATTGAAACTAA+AGG - chr7_2:13683052-13683071 Msa1049960:five_prime_UTR 25.0%
! GTTAACATTGAATAACATAG+AGG - chr7_2:13683076-13683095 Msa1049960:five_prime_UTR 25.0%
! ATCTCCAAAACTTTATCAAT+TGG - chr7_2:13683120-13683139 Msa1049960:five_prime_UTR 25.0%
! TCTCCAAAACTTTATCAATT+GGG - chr7_2:13683121-13683140 Msa1049960:five_prime_UTR 25.0%
! AATGCTTTATAGTACTTGTT+TGG - chr7_2:13683153-13683172 Msa1049960:five_prime_UTR 25.0%
GATACCCATTTGATTGAAAA+TGG + chr7_2:13680188-13680207 None:intergenic 30.0%
ATGGAATAACAAGAAAGTGA+GGG + chr7_2:13680210-13680229 None:intergenic 30.0%
TATGGAATAACAAGAAAGTG+AGG + chr7_2:13680211-13680230 None:intergenic 30.0%
AACATGACATAATTGCATGA+GGG + chr7_2:13680257-13680276 None:intergenic 30.0%
AAACATGACATAATTGCATG+AGG + chr7_2:13680258-13680277 None:intergenic 30.0%
!!! TGTCATGTTTTAACCAAACA+TGG - chr7_2:13680268-13680287 Msa1049960:CDS 30.0%
!! CTTGACTTTGTTCATTTTTG+AGG + chr7_2:13680375-13680394 None:intergenic 30.0%
TTGTTATCTTCAATATGGGA+TGG - chr7_2:13680561-13680580 Msa1049960:CDS 30.0%
TGTTATCTTCAATATGGGAT+GGG - chr7_2:13680562-13680581 Msa1049960:CDS 30.0%
! TTGCTGTGTTGTTATACATA+TGG - chr7_2:13680795-13680814 Msa1049960:CDS 30.0%
! TGCTGTGTTGTTATACATAT+GGG - chr7_2:13680796-13680815 Msa1049960:CDS 30.0%
GATCAAAAACCTTAGATAGT+CGG + chr7_2:13680918-13680937 None:intergenic 30.0%
ATATTGAAATAACCAACCAC+TGG - chr7_2:13681264-13681283 Msa1049960:intron 30.0%
TATTGAAATAACCAACCACT+GGG - chr7_2:13681265-13681284 Msa1049960:intron 30.0%
TATCTATTTCATGTGTTCTC+AGG - chr7_2:13681996-13682015 Msa1049960:intron 30.0%
! AGTATTTTACACTTGCAGTA+TGG + chr7_2:13682104-13682123 None:intergenic 30.0%
! TGAATGTTTTTCGTCTTAGA+AGG - chr7_2:13682123-13682142 Msa1049960:intron 30.0%
!!! TGTCATTTTCCATCATCAAT+GGG + chr7_2:13682518-13682537 None:intergenic 30.0%
ATATGTTTCCTTCGATAGTT+TGG - chr7_2:13682614-13682633 Msa1049960:intron 30.0%
! TCTTTAACAAGCCTTTTCTT+TGG - chr7_2:13682685-13682704 Msa1049960:intron 30.0%
! TTTACCTTGTTGTCATTACT+CGG + chr7_2:13682720-13682739 None:intergenic 30.0%
TAAAGGCAAGATTGTTAGTT+GGG - chr7_2:13682770-13682789 Msa1049960:CDS 30.0%
! TGGTTCAATATCTTTTTCTG+CGG + chr7_2:13682798-13682817 None:intergenic 30.0%
! GCTTGTTTCATTAGTCATTT+TGG - chr7_2:13682828-13682847 Msa1049960:five_prime_UTR 30.0%
!! GTTTCATTAGTCATTTTGGT+TGG - chr7_2:13682832-13682851 Msa1049960:five_prime_UTR 30.0%
! ACTATAGAAGGTGTATATTC+TGG - chr7_2:13682861-13682880 Msa1049960:five_prime_UTR 30.0%
AGTCATATATTTGTGATGTG+TGG - chr7_2:13682931-13682950 Msa1049960:five_prime_UTR 30.0%
GAATTAGACAAGGATGAAAA+TGG - chr7_2:13682966-13682985 Msa1049960:five_prime_UTR 30.0%
AAAGGAAGAGATAAAGAAGA+AGG - chr7_2:13682998-13683017 Msa1049960:five_prime_UTR 30.0%
TTGAATAACATAGAGGAAGA+TGG - chr7_2:13683083-13683102 Msa1049960:five_prime_UTR 30.0%
ACATGACATAATTGCATGAG+GGG + chr7_2:13680256-13680275 None:intergenic 35.0%
TGTGGATGAATTCTGTGTTA+AGG + chr7_2:13680309-13680328 None:intergenic 35.0%
TGATCACTTCTATCATCTTC+AGG + chr7_2:13680436-13680455 None:intergenic 35.0%
AACATCTTCCTATGAGCTTA+GGG + chr7_2:13680504-13680523 None:intergenic 35.0%
TAACATCTTCCTATGAGCTT+AGG + chr7_2:13680505-13680524 None:intergenic 35.0%
GGACACAACTTAGGAATTAA+AGG - chr7_2:13680596-13680615 Msa1049960:CDS 35.0%
!!! AAAGGTGTTTTTCTTTGGAC+TGG - chr7_2:13680614-13680633 Msa1049960:CDS 35.0%
ATCCCTGAACTAATTGATGA+TGG - chr7_2:13680668-13680687 Msa1049960:CDS 35.0%
CTCCATCATCAATTAGTTCA+GGG + chr7_2:13680673-13680692 None:intergenic 35.0%
ACTCCATCATCAATTAGTTC+AGG + chr7_2:13680674-13680693 None:intergenic 35.0%
TTGATCCCACTATCAATTTG+TGG - chr7_2:13680932-13680951 Msa1049960:CDS 35.0%
TGATCCCACTATCAATTTGT+GGG - chr7_2:13680933-13680952 Msa1049960:CDS 35.0%
!!! CCTATGGTGTCTATTTTAGT+GGG + chr7_2:13680998-13681017 None:intergenic 35.0%
!! TCCTATGGTGTCTATTTTAG+TGG + chr7_2:13680999-13681018 None:intergenic 35.0%
CAATGGAGATAATCTTGATG+AGG + chr7_2:13681363-13681382 None:intergenic 35.0%
CTCATCAAGATTATCTCCAT+TGG - chr7_2:13681361-13681380 Msa1049960:intron 35.0%
TGGTACTATCACAAGTACTT+GGG - chr7_2:13681801-13681820 Msa1049960:intron 35.0%
CAATGCTGGCAAATATATTG+AGG - chr7_2:13681917-13681936 Msa1049960:intron 35.0%
AGACACAAGATAGCTTCATA+TGG + chr7_2:13681972-13681991 None:intergenic 35.0%
! ATTTTACACTTGCAGTATGG+TGG + chr7_2:13682101-13682120 None:intergenic 35.0%
! TAGTTCTTTGAAGGAGATCA+AGG - chr7_2:13682179-13682198 Msa1049960:intron 35.0%
GAGCTGAATTTCTTGATCTT+TGG + chr7_2:13682310-13682329 None:intergenic 35.0%
TCACCAAAATTCCTACCAAT+TGG - chr7_2:13682492-13682511 Msa1049960:intron 35.0%
!!! CTGTCATTTTCCATCATCAA+TGG + chr7_2:13682519-13682538 None:intergenic 35.0%
ACAGCAACAAAAGTTCATTC+TGG - chr7_2:13682535-13682554 Msa1049960:intron 35.0%
TTGCTTATCTAGCCAATCTA+CGG + chr7_2:13682577-13682596 None:intergenic 35.0%
GAAACATATACGACAGATTG+AGG + chr7_2:13682603-13682622 None:intergenic 35.0%
CTAAAGGCAAGATTGTTAGT+TGG - chr7_2:13682769-13682788 Msa1049960:CDS 35.0%
CTAATGAAACAAGCTATAGC+AGG + chr7_2:13682822-13682841 None:intergenic 35.0%
GGTTGGAATTCTACTATAGA+AGG - chr7_2:13682849-13682868 Msa1049960:five_prime_UTR 35.0%
GCTTGGATTTGAATTAGACA+AGG - chr7_2:13682956-13682975 Msa1049960:five_prime_UTR 35.0%
!! TGAAAATGGGCTAGTACTAA+AGG - chr7_2:13682980-13682999 Msa1049960:five_prime_UTR 35.0%
! TCGCCCAATTGATAAAGTTT+TGG + chr7_2:13683127-13683146 None:intergenic 35.0%
GCTTTATAGTACTTGTTTGG+TGG - chr7_2:13683156-13683175 Msa1049960:five_prime_UTR 35.0%
GAATTATATGACCTGGGACT+GGG + chr7_2:13680234-13680253 None:intergenic 40.0%
TGAGGGGAATTATATGACCT+GGG + chr7_2:13680240-13680259 None:intergenic 40.0%
ATGAGGGGAATTATATGACC+TGG + chr7_2:13680241-13680260 None:intergenic 40.0%
TTGGAAGTTGGACACAACTT+AGG - chr7_2:13680587-13680606 Msa1049960:CDS 40.0%
! GATGGAGTAATTGATTCAGC+AGG - chr7_2:13680686-13680705 Msa1049960:CDS 40.0%
GATCCCACTATCAATTTGTG+GGG - chr7_2:13680934-13680953 Msa1049960:CDS 40.0%
CCCACTAAAATAGACACCAT+AGG - chr7_2:13680995-13681014 Msa1049960:CDS 40.0%
!! GTTTCAGGTTCGATTTCCTA+TGG + chr7_2:13681014-13681033 None:intergenic 40.0%
GAACCTGAAACCTTATGAAG+AGG - chr7_2:13681023-13681042 Msa1049960:CDS 40.0%
TTGAAGTGTGCCTCTTCATA+AGG + chr7_2:13681036-13681055 None:intergenic 40.0%
! TTATGAAGAGGCACACTTCA+AGG - chr7_2:13681035-13681054 Msa1049960:CDS 40.0%
!! TTTGACCTAGTTGTTGGCTT+GGG + chr7_2:13681062-13681081 None:intergenic 40.0%
! TTTGGGTTTGACCTAGTTGT+TGG + chr7_2:13681068-13681087 None:intergenic 40.0%
GAATCAACGTAGTCTAGTCT+CGG + chr7_2:13681154-13681173 None:intergenic 40.0%
AAATAACCAACCACTGGGTT+AGG - chr7_2:13681270-13681289 Msa1049960:intron 40.0%
! TGGGTTAGGTTTAGCAATGT+AGG - chr7_2:13681284-13681303 Msa1049960:intron 40.0%
GGGTTAGGTTTAGCAATGTA+GGG - chr7_2:13681285-13681304 Msa1049960:intron 40.0%
! CTCTCAACGTAGCAAACTTT+TGG - chr7_2:13681561-13681580 Msa1049960:intron 40.0%
TGTAGAATTGTATTGCCGTG+TGG - chr7_2:13681728-13681747 Msa1049960:intron 40.0%
GTAGAATTGTATTGCCGTGT+GGG - chr7_2:13681729-13681748 Msa1049960:intron 40.0%
ACAACTTTCTGTTACCCACA+CGG + chr7_2:13681746-13681765 None:intergenic 40.0%
GTGGTACTATCACAAGTACT+TGG - chr7_2:13681800-13681819 Msa1049960:intron 40.0%
CCTCAAACATGGTACTTGTT+AGG + chr7_2:13681843-13681862 None:intergenic 40.0%
CCTAACAAGTACCATGTTTG+AGG - chr7_2:13681840-13681859 Msa1049960:intron 40.0%
AGCTTCATATGGTCTCATGT+CGG + chr7_2:13681961-13681980 None:intergenic 40.0%
ACATGTCACATGGAAGCAAA+AGG + chr7_2:13682055-13682074 None:intergenic 40.0%
TTTGCTTCCATGTGACATGT+TGG - chr7_2:13682055-13682074 Msa1049960:intron 40.0%
!!! ACGTTTTTAGTGTCCAGCTT+TGG + chr7_2:13682345-13682364 None:intergenic 40.0%
TGGACACTAAAAACGTTCCA+TGG - chr7_2:13682349-13682368 Msa1049960:intron 40.0%
AGACCATGAAGTTAGGACAT+TGG - chr7_2:13682421-13682440 Msa1049960:intron 40.0%
!! TGGTAGGAATTTTGGTGAGA+TGG + chr7_2:13682490-13682509 None:intergenic 40.0%
AAGACATGACTTCCGTAGAT+TGG - chr7_2:13682562-13682581 Msa1049960:intron 40.0%
ACATATACGACAGATTGAGG+CGG + chr7_2:13682600-13682619 None:intergenic 40.0%
CATTACTGCCAAACTATCGA+AGG + chr7_2:13682625-13682644 None:intergenic 40.0%
CTTCGATAGTTTGGCAGTAA+TGG - chr7_2:13682623-13682642 Msa1049960:intron 40.0%
GGACGAACAATCCAAAGAAA+AGG + chr7_2:13682699-13682718 None:intergenic 40.0%
TAGTTCCAAGGAACTCATCA+GGG + chr7_2:13682752-13682771 None:intergenic 40.0%
TTAGTTCCAAGGAACTCATC+AGG + chr7_2:13682753-13682772 None:intergenic 40.0%
GATGAGTTCCTTGGAACTAA+AGG - chr7_2:13682753-13682772 Msa1049960:CDS 40.0%
! CAATCTTGCCTTTAGTTCCA+AGG + chr7_2:13682764-13682783 None:intergenic 40.0%
TGAAACAAGCTATAGCAGGA+TGG + chr7_2:13682818-13682837 None:intergenic 40.0%
CTGGTATACCTTTCTTGTGT+TGG - chr7_2:13682880-13682899 Msa1049960:five_prime_UTR 40.0%
GGAAGAGATAAAGAAGAAGG+TGG - chr7_2:13683001-13683020 Msa1049960:five_prime_UTR 40.0%
AAGAAGGTGGAACAATTGCT+TGG - chr7_2:13683014-13683033 Msa1049960:five_prime_UTR 40.0%
GGAATTATATGACCTGGGAC+TGG + chr7_2:13680235-13680254 None:intergenic 45.0%
AGTGATCTTGCAGCCATGTT+TGG + chr7_2:13680284-13680303 None:intergenic 45.0%
AACTTTGTCACACTCCCAGA+TGG - chr7_2:13680403-13680422 Msa1049960:CDS 45.0%
! CTTCAGGTTCCAAACCATCT+GGG + chr7_2:13680420-13680439 None:intergenic 45.0%
! TCTTCAGGTTCCAAACCATC+TGG + chr7_2:13680421-13680440 None:intergenic 45.0%
! CTTCAATATGGGATGGGCTT+TGG - chr7_2:13680568-13680587 Msa1049960:CDS 45.0%
! ACCTTAGATAGTCGGCTCTT+GGG + chr7_2:13680910-13680929 None:intergenic 45.0%
! AACCTTAGATAGTCGGCTCT+TGG + chr7_2:13680911-13680930 None:intergenic 45.0%
!! GCTACGCTCTGGCTTTAAAT+GGG + chr7_2:13680960-13680979 None:intergenic 45.0%
!! AGCTACGCTCTGGCTTTAAA+TGG + chr7_2:13680961-13680980 None:intergenic 45.0%
GTCAATATAGAGCTACGCTC+TGG + chr7_2:13680971-13680990 None:intergenic 45.0%
GTGCCTCTTCATAAGGTTTC+AGG + chr7_2:13681029-13681048 None:intergenic 45.0%
! GTTTGACCTAGTTGTTGGCT+TGG + chr7_2:13681063-13681082 None:intergenic 45.0%
CATTGCTAAACCTAACCCAG+TGG + chr7_2:13681283-13681302 None:intergenic 45.0%
GCAATGTAGGGTAGCTTATG+AGG - chr7_2:13681297-13681316 Msa1049960:intron 45.0%
TTGAGGTAGAGATGTTCCAC+AGG - chr7_2:13681934-13681953 Msa1049960:intron 45.0%
TGAGGTAGAGATGTTCCACA+GGG - chr7_2:13681935-13681954 Msa1049960:intron 45.0%
! TGGAAGCAAAAGGTGCAATG+CGG + chr7_2:13682045-13682064 None:intergenic 45.0%
TCATGAGCCAACATGTCACA+TGG + chr7_2:13682065-13682084 None:intergenic 45.0%
TTACACTTGCAGTATGGTGG+TGG + chr7_2:13682098-13682117 None:intergenic 45.0%
AGAATCCAAGGCGAGTAATG+TGG + chr7_2:13682213-13682232 None:intergenic 45.0%
! GTGTCCAGCTTTGGCATATT+CGG + chr7_2:13682336-13682355 None:intergenic 45.0%
CTAAAAACGTTCCATGGCAG+CGG - chr7_2:13682355-13682374 Msa1049960:intron 45.0%
GAGATGCAGACCATGAAGTT+AGG - chr7_2:13682414-13682433 Msa1049960:intron 45.0%
CCACCAATGTCCTAACTTCA+TGG + chr7_2:13682427-13682446 None:intergenic 45.0%
CCATGAAGTTAGGACATTGG+TGG - chr7_2:13682424-13682443 Msa1049960:intron 45.0%
! GGGCCAATTGGTAGGAATTT+TGG + chr7_2:13682498-13682517 None:intergenic 45.0%
TCATCAATGGGCCAATTGGT+AGG + chr7_2:13682506-13682525 None:intergenic 45.0%
ACCAATTGGCCCATTGATGA+TGG - chr7_2:13682506-13682525 Msa1049960:intron 45.0%
TCCATCATCAATGGGCCAAT+TGG + chr7_2:13682510-13682529 None:intergenic 45.0%
TCGTCCGAGTAATGACAACA+AGG - chr7_2:13682713-13682732 Msa1049960:CDS 45.0%
GCAAATGGCCAACACAAGAA+AGG + chr7_2:13682891-13682910 None:intergenic 45.0%
ATTTGTGATGTGTGGCAGCT+TGG - chr7_2:13682939-13682958 Msa1049960:five_prime_UTR 45.0%
!!! ATTTTTTTTTTAAAAAAACT+CGG - chr7_2:13680878-13680897 Msa1049960:CDS 5.0%
GTTATTCCATACCCAGTCCC+AGG - chr7_2:13680220-13680239 Msa1049960:three_prime_UTR 50.0%
ATATGACCTGGGACTGGGTA+TGG + chr7_2:13680229-13680248 None:intergenic 50.0%
TGTCACACTCCCAGATGGTT+TGG - chr7_2:13680408-13680427 Msa1049960:CDS 50.0%
ATGAGCTTAGGGAGCAAAGG+AGG + chr7_2:13680493-13680512 None:intergenic 50.0%
CCTATGAGCTTAGGGAGCAA+AGG + chr7_2:13680496-13680515 None:intergenic 50.0%
CCTTTGCTCCCTAAGCTCAT+AGG - chr7_2:13680493-13680512 Msa1049960:CDS 50.0%
!! ATGGGATGGGCTTTGGAAGT+TGG - chr7_2:13680575-13680594 Msa1049960:CDS 50.0%
! GACTGGCTCAGCAACTTCTT+TGG - chr7_2:13680631-13680650 Msa1049960:CDS 50.0%
! GGGCCCCACAAATTGATAGT+GGG + chr7_2:13680940-13680959 None:intergenic 50.0%
TGGGCCCCACAAATTGATAG+TGG + chr7_2:13680941-13680960 None:intergenic 50.0%
AAGGTCCCAAGCCAACAACT+AGG - chr7_2:13681054-13681073 Msa1049960:CDS 50.0%
GCTAAACCTAACCCAGTGGT+TGG + chr7_2:13681279-13681298 None:intergenic 50.0%
CGGTAGAGAAAGTTCAGCAG+GGG + chr7_2:13682025-13682044 None:intergenic 50.0%
GCGGTAGAGAAAGTTCAGCA+GGG + chr7_2:13682026-13682045 None:intergenic 50.0%
TGCGGTAGAGAAAGTTCAGC+AGG + chr7_2:13682027-13682046 None:intergenic 50.0%
CAGTTCCACATTACTCGCCT+TGG - chr7_2:13682205-13682224 Msa1049960:intron 50.0%
CTCTCCGAATATGCCAAAGC+TGG - chr7_2:13682329-13682348 Msa1049960:intron 50.0%
GCATACCCTGATGAGTTCCT+TGG - chr7_2:13682744-13682763 Msa1049960:CDS 50.0%
GCCCAAGAGCCGACTATCTA+AGG - chr7_2:13680906-13680925 Msa1049960:CDS 55.0%
TTGTCAAAGGTCCGCTGCCA+TGG + chr7_2:13682369-13682388 None:intergenic 55.0%
ATGGTCTCATGTCGGCCCTG+TGG + chr7_2:13681953-13681972 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 13680184 13683218 13680184 ID=Msa1049960;Name=Msa1049960
chr7_2 mRNA 13680184 13683218 13680184 ID=Msa1049960-mRNA-1;Parent=Msa1049960;Name=Msa1049960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=391|1|1|1|1|1|2|67|328
chr7_2 exon 13680184 13681104 13680184 ID=Msa1049960-mRNA-1:exon:3387;Parent=Msa1049960-mRNA-1
chr7_2 exon 13682695 13683218 13682695 ID=Msa1049960-mRNA-1:exon:3386;Parent=Msa1049960-mRNA-1
chr7_2 five_prime_UTR 13682828 13683218 13682828 ID=Msa1049960-mRNA-1:five_prime_utr;Parent=Msa1049960-mRNA-1
chr7_2 CDS 13682695 13682827 13682695 ID=Msa1049960-mRNA-1:cds;Parent=Msa1049960-mRNA-1
chr7_2 CDS 13680251 13681104 13680251 ID=Msa1049960-mRNA-1:cds;Parent=Msa1049960-mRNA-1
chr7_2 three_prime_UTR 13680184 13680250 13680184 ID=Msa1049960-mRNA-1:three_prime_utr;Parent=Msa1049960-mRNA-1
Gene Sequence

>Msa1049960

ATGGGATGGGCTTTGGAAGTTGGACACAACTTAGGAATTAAAGGTGTTTTTCTTTGGACTGGCTCAGCAACTTCTTTGGCTTATTTTCATAGCATCCCTGAACTAATTGATGATGGAGTAATTGATTCAGCAGGAATTTATACCAAAGATCAAGAAATTCAGCTCTCTCCGAATATGCCAAAGCTGGACACTAAAAACGTTCCATGGCAGCGGACCTTTGACAAGATCTTATTTGATCATCTTGCACAAGAGATGCAGACCATGAAGTTAGGACATTGGTGGCTTTGCAACACAACTTATAATCTAGAGCATGCAACATTCTCCATCTCACCAAAATTCCTACCAATTGGCCCATTGATGATGGAAAATGACAGCAACAAAAGTTCATTCTGGCAAGAAGACATGACTTCCGTAGATTGGCTAGATAAGCAACCGCCTCAATCTGTCGTATATGTTTCCTTCGATAGTTTGGCAGTAATGGACCAAAACCAATTTAAAGAATTAACATTAGGGCTTGATCTCTTTAACAAGCCTTTTCTTTGGATTGTTCGTCCGAGTAATGACAACAAGGTAAACTATGCATACCCTGATGAGTTCCTTGGAACTAAAGGCAAGATTGTTAGTTGGGCACCGCAGAAAAAGATATTGAACCATCCTGCTATAGCTTGTTTCATTAGTCATTTTGGTTGGAATTCTACTATAGAAGGTGTATATTCTGGTATACCTTTCTTGTGTTGGCCATTTGCAACTGATCAATTTATGAACAAGTCATATATTTGTGATGTGTGGCAGCTTGGATTTGAATTAGACAAGGATGAAAATGGGCTAGTACTAAAGGAAGAGATAAAGAAGAAGGTGGAACAATTGCTTGGAGATGAAGATATAAAAGAAAGATCATTGAAACTAAAGGAGTTAACATTGAATAACATAGAGGAAGATGGTCAATCTTCAAAGAATCTCCAAAACTTTATCAATTGGGCGATGTAA
Protein sequence

>Msa1049960

MGWALEVGHNLGIKGVFLWTGSATSLAYFHSIPELIDDGVIDSAGIYTKDQEIQLSPNMPKLDTKNVPWQRTFDKILFDHLAQEMQTMKLGHWWLCNTTYNLEHATFSISPKFLPIGPLMMENDSNKSSFWQEDMTSVDWLDKQPPQSVVYVSFDSLAVMDQNQFKELTLGLDLFNKPFLWIVRPSNDNKVNYAYPDEFLGTKGKIVSWAPQKKILNHPAIACFISHFGWNSTIEGVYSGIPFLCWPFATDQFMNKSYICDVWQLGFELDKDENGLVLKEEIKKKVEQLLGDEDIKERSLKLKELTLNNIEEDGQSSKNLQNFINWAM*