AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1008360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008360 MtrunA17_Chr7g0218811 89.348 460 39 2 1 460 1 450 0.0 850
Msa1008360 MtrunA17_Chr7g0218821 83.407 452 70 3 11 459 1 450 0.0 776
Msa1008360 MtrunA17_Chr7g0218831 67.114 447 136 2 13 459 4 439 0.0 637
Msa1008360 MtrunA17_Chr7g0218841 66.964 448 136 3 13 459 4 440 0.0 630
Msa1008360 MtrunA17_Chr7g0218791 57.556 450 184 3 11 459 1 444 0.0 541
Msa1008360 MtrunA17_Chr3g0118661 33.483 445 259 10 6 422 4 439 2.17e-75 244
Msa1008360 MtrunA17_Chr3g0078841 32.211 475 281 11 14 456 9 474 4.15e-74 241
Msa1008360 MtrunA17_Chr3g0118671 32.278 474 280 11 15 456 6 470 2.01e-72 236
Msa1008360 MtrunA17_Chr5g0426431 32.773 476 279 13 13 457 10 475 4.48e-72 235
Msa1008360 MtrunA17_Chr3g0092641 32.225 481 283 14 6 457 3 469 4.80e-72 235
Msa1008360 MtrunA17_Chr3g0118691 31.579 475 284 11 14 456 14 479 5.53e-72 235
Msa1008360 MtrunA17_Chr3g0118771 32.211 475 281 13 14 456 20 485 6.90e-72 235
Msa1008360 MtrunA17_Chr6g0454341 31.789 475 283 11 14 456 9 474 1.13e-71 234
Msa1008360 MtrunA17_Chr6g0454331 31.458 480 284 13 14 457 6 476 5.06e-71 233
Msa1008360 MtrunA17_Chr8g0336331 32.135 473 281 11 15 456 10 473 9.71e-71 232
Msa1008360 MtrunA17_Chr5g0448551 30.349 458 290 11 11 456 3 443 3.05e-70 230
Msa1008360 MtrunA17_Chr6g0454401 32.568 479 277 15 14 456 9 477 8.63e-70 229
Msa1008360 MtrunA17_Chr3g0118701 32.965 452 265 12 14 436 14 456 8.71e-70 229
Msa1008360 MtrunA17_Chr3g0118711 31.637 452 271 10 14 436 12 454 1.03e-69 229
Msa1008360 MtrunA17_Chr6g0454321 31.798 456 270 12 15 438 10 456 4.39e-69 231
Msa1008360 MtrunA17_Chr2g0278711 31.656 477 281 14 14 457 10 474 6.15e-69 227
Msa1008360 MtrunA17_Chr7g0217881 31.838 468 276 12 14 456 9 458 2.31e-68 225
Msa1008360 MtrunA17_Chr6g0454151 31.315 479 288 12 14 460 9 478 4.70e-68 225
Msa1008360 MtrunA17_Chr6g0464871 31.478 467 273 11 13 456 21 463 2.50e-67 223
Msa1008360 MtrunA17_Chr6g0454301 31.579 475 284 11 14 456 262 727 1.03e-66 227
Msa1008360 MtrunA17_Chr6g0454301 35.776 232 131 5 243 460 3 230 5.23e-39 150
Msa1008360 MtrunA17_Chr6g0454191 30.962 478 286 12 14 456 9 477 2.38e-66 220
Msa1008360 MtrunA17_Chr6g0454291 30.689 479 285 13 14 456 6 473 2.60e-66 220
Msa1008360 MtrunA17_Chr6g0454261 29.916 478 290 12 14 456 9 476 5.60e-66 219
Msa1008360 MtrunA17_Chr6g0453951 30.498 482 290 14 14 460 56 527 6.60e-66 220
Msa1008360 MtrunA17_Chr6g0454181 30.818 477 287 13 14 456 9 476 1.13e-65 218
Msa1008360 MtrunA17_Chr6g0464921 31.983 469 269 13 14 457 10 453 2.48e-65 217
Msa1008360 MtrunA17_Chr6g0454131 32.150 479 277 13 14 456 9 475 7.69e-65 216
Msa1008360 MtrunA17_Chr6g0454141 29.707 478 291 12 14 456 9 476 8.18e-65 216
Msa1008360 MtrunA17_Chr6g0454211 30.753 478 286 13 14 456 296 763 1.10e-64 222
Msa1008360 MtrunA17_Chr6g0454211 35.625 160 63 5 229 376 105 236 1.66e-20 94.7
Msa1008360 MtrunA17_Chr7g0249981 30.108 465 278 13 15 457 25 464 1.35e-64 216
Msa1008360 MtrunA17_Chr6g0464841 31.635 471 275 12 9 456 5 451 2.69e-64 214
Msa1008360 MtrunA17_Chr6g0464861 31.183 465 274 11 14 456 10 450 6.71e-64 213
Msa1008360 MtrunA17_Chr3g0118751 31.635 471 260 14 14 456 5 441 7.39e-64 213
Msa1008360 MtrunA17_Chr8g0359821 31.524 479 279 14 14 456 9 474 7.53e-64 214
Msa1008360 MtrunA17_Chr6g0454361 31.524 479 283 14 14 457 10 478 1.64e-63 213
Msa1008360 MtrunA17_Chr6g0454201 32.150 479 278 15 14 456 10 477 3.47e-63 212
Msa1008360 MtrunA17_Chr6g0454121 31.303 476 285 12 14 456 9 475 7.13e-63 211
Msa1008360 MtrunA17_Chr6g0453961 29.461 482 296 12 14 460 18 490 7.31e-62 209
Msa1008360 MtrunA17_Chr6g0464881 29.512 471 285 12 13 460 9 455 9.49e-62 207
Msa1008360 MtrunA17_Chr4g0053501 30.544 478 271 15 15 457 11 462 2.90e-61 207
Msa1008360 MtrunA17_Chr6g0452771 30.689 479 285 12 14 456 9 476 4.32e-61 206
Msa1008360 MtrunA17_Chr5g0412111 30.849 483 276 13 11 458 1 460 1.21e-60 205
Msa1008360 MtrunA17_Chr1g0207981 27.862 463 309 7 15 457 13 470 1.75e-60 205
Msa1008360 MtrunA17_Chr7g0250001 28.817 465 284 11 15 457 6 445 2.73e-60 204
Msa1008360 MtrunA17_Chr4g0050341 31.020 461 268 14 14 437 18 465 1.31e-59 203
Msa1008360 MtrunA17_Chr4g0053321 28.689 488 293 13 2 457 13 477 3.31e-59 202
Msa1008360 MtrunA17_Chr5g0412131 31.315 479 278 14 12 458 9 468 7.07e-59 200
Msa1008360 MtrunA17_Chr5g0414331 30.277 469 273 16 15 458 13 452 7.13e-59 200
Msa1008360 MtrunA17_Chr5g0423981 29.474 475 269 14 14 460 9 445 6.37e-58 197
Msa1008360 MtrunA17_Chr5g0414321 29.449 472 277 14 15 460 11 452 1.51e-57 196
Msa1008360 MtrunA17_Chr6g0454351 29.046 482 280 14 14 460 11 465 1.82e-57 196
Msa1008360 MtrunA17_Chr3g0112761 31.749 463 271 12 15 456 8 446 8.17e-57 194
Msa1008360 MtrunA17_Chr6g0454251 30.479 397 236 11 14 377 6 395 2.30e-54 186
Msa1008360 MtrunA17_Chr3g0122001 29.046 482 286 14 15 457 486 950 2.83e-54 195
Msa1008360 MtrunA17_Chr3g0122001 28.157 483 290 16 15 457 6 471 5.54e-47 174
Msa1008360 MtrunA17_Chr7g0249931 28.964 473 275 16 15 457 40 481 3.41e-54 188
Msa1008360 MtrunA17_Chr3g0098111 29.787 470 290 16 15 456 9 466 3.67e-54 188
Msa1008360 MtrunA17_Chr3g0121991 29.200 500 290 17 1 457 65 543 4.14e-54 189
Msa1008360 MtrunA17_Chr8g0377921 29.132 484 281 18 13 457 1 461 6.16e-54 187
Msa1008360 MtrunA17_Chr8g0380531 29.274 468 284 14 15 457 10 455 9.21e-54 186
Msa1008360 MtrunA17_Chr1g0207861 30.591 474 281 16 15 456 8 465 6.29e-53 185
Msa1008360 MtrunA17_Chr1g0207971 29.399 466 282 16 15 456 8 450 1.54e-52 183
Msa1008360 MtrunA17_Chr5g0412101 29.792 480 281 14 14 458 11 469 5.62e-52 182
Msa1008360 MtrunA17_Chr3g0112771 30.621 467 267 14 17 457 14 449 1.87e-51 180
Msa1008360 MtrunA17_Chr1g0161351 30.213 470 288 17 15 456 37 494 1.27e-50 179
Msa1008360 MtrunA17_Chr8g0365811 29.325 474 285 17 17 456 497 954 1.60e-50 184
Msa1008360 MtrunA17_Chr8g0365811 31.308 428 257 14 17 416 11 429 2.55e-48 178
Msa1008360 MtrunA17_Chr8g0347281 28.601 486 263 16 14 452 17 465 3.72e-50 177
Msa1008360 MtrunA17_Chr4g0032331 29.424 469 287 16 13 460 5 450 5.96e-50 176
Msa1008360 MtrunA17_Chr6g0454221 39.738 229 119 4 243 456 3 227 1.65e-49 171
Msa1008360 MtrunA17_Chr1g0207931 28.261 460 257 12 15 457 92 495 2.54e-49 176
Msa1008360 MtrunA17_Chr5g0401721 28.964 473 290 15 17 457 10 468 5.76e-49 174
Msa1008360 MtrunA17_Chr8g0377941 28.326 466 294 14 17 457 9 459 7.45e-49 174
Msa1008360 MtrunA17_Chr7g0243681 28.690 481 291 14 15 457 11 477 1.20e-48 173
Msa1008360 MtrunA17_Chr7g0243631 28.343 501 291 18 4 457 5 484 8.62e-48 171
Msa1008360 MtrunA17_Chr5g0431441 28.602 465 289 13 15 456 18 462 1.04e-47 171
Msa1008360 MtrunA17_Chr6g0454271 36.948 249 135 6 226 456 39 283 2.99e-47 164
Msa1008360 MtrunA17_Chr7g0232401 32.184 348 203 11 137 457 124 465 2.38e-46 167
Msa1008360 MtrunA17_Chr1g0207951 29.449 472 275 16 15 456 124 567 3.73e-46 172
Msa1008360 MtrunA17_Chr1g0207951 28.511 470 288 15 15 456 656 1105 2.74e-43 163
Msa1008360 MtrunA17_Chr5g0393591 27.352 457 282 13 13 457 15 433 1.14e-45 164
Msa1008360 MtrunA17_Chr8g0347271 26.931 479 280 13 14 452 18 466 1.60e-45 165
Msa1008360 MtrunA17_Chr1g0207831 29.583 480 271 17 16 456 9 460 1.73e-45 164
Msa1008360 MtrunA17_Chr8g0335161 32.041 387 207 14 109 455 92 462 1.88e-45 164
Msa1008360 MtrunA17_Chr7g0275681 27.984 486 298 17 13 460 10 481 3.45e-44 161
Msa1008360 MtrunA17_Chr7g0243931 27.329 483 300 14 15 457 17 488 6.49e-44 161
Msa1008360 MtrunA17_Chr4g0060511 27.366 486 299 15 15 457 11 485 7.65e-44 160
Msa1008360 MtrunA17_Chr7g0275511 27.105 487 281 14 14 455 14 471 1.01e-43 160
Msa1008360 MtrunA17_Chr6g0459311 27.637 474 285 18 18 455 16 467 1.11e-43 159
Msa1008360 MtrunA17_Chr6g0449931 28.452 478 285 16 15 455 6 463 1.31e-43 159
Msa1008360 MtrunA17_Chr5g0426401 34.130 293 163 10 190 457 21 308 1.51e-43 155
Msa1008360 MtrunA17_Chr7g0243771 27.216 485 294 14 15 457 6 473 2.38e-43 159
Msa1008360 MtrunA17_Chr6g0486251 27.447 470 291 16 18 455 9 460 2.84e-43 158
Msa1008360 MtrunA17_Chr6g0486201 27.447 470 291 16 18 455 9 460 2.84e-43 158
Msa1008360 MtrunA17_Chr3g0118721 36.207 232 127 6 242 456 59 286 2.66e-42 151
Msa1008360 MtrunA17_Chr7g0249961 36.052 233 133 5 238 457 28 257 3.07e-42 150
Msa1008360 MtrunA17_Chr8g0335141 27.731 476 291 18 14 455 8 464 6.23e-42 155
Msa1008360 MtrunA17_Chr8g0334851 28.536 403 235 14 88 452 75 462 1.90e-41 154
Msa1008360 MtrunA17_Chr8g0336691 29.111 371 229 8 109 451 1006 1370 2.16e-41 157
Msa1008360 MtrunA17_Chr8g0336691 27.559 381 231 8 109 455 100 469 1.84e-39 152
Msa1008360 MtrunA17_Chr8g0336691 30.163 368 210 10 109 455 567 908 2.33e-37 145
Msa1008360 MtrunA17_Chr7g0243801 26.471 476 301 13 19 457 11 474 2.26e-41 154
Msa1008360 MtrunA17_Chr7g0232411 26.582 474 297 16 15 455 6 461 2.52e-41 153
Msa1008360 MtrunA17_Chr7g0243951 27.459 488 292 18 15 457 11 481 3.02e-41 153
Msa1008360 MtrunA17_Chr7g0243861 25.051 487 306 13 15 457 14 485 3.20e-41 153
Msa1008360 MtrunA17_Chr7g0243871 27.500 480 289 14 17 457 11 470 3.83e-41 153
Msa1008360 MtrunA17_Chr8g0339451 31.063 367 208 13 125 455 102 459 3.93e-41 152
Msa1008360 MtrunA17_Chr7g0265041 26.423 492 311 15 11 460 7 489 4.08e-41 153
Msa1008360 MtrunA17_Chr8g0336651 29.101 378 231 8 109 455 868 1239 4.23e-41 157
Msa1008360 MtrunA17_Chr8g0336651 36.287 237 118 8 248 459 237 465 8.19e-36 141
Msa1008360 MtrunA17_Chr8g0336651 32.197 264 136 6 210 455 532 770 1.30e-35 140
Msa1008360 MtrunA17_Chr5g0431421 26.947 475 277 16 15 457 10 446 4.81e-41 152
Msa1008360 MtrunA17_Chr5g0431361 27.119 472 289 16 12 457 9 451 5.86e-41 152
Msa1008360 MtrunA17_Chr5g0431401 26.105 475 281 16 15 457 10 446 1.53e-40 150
Msa1008360 MtrunA17_Chr8g0373301 27.089 395 242 12 95 455 80 462 1.70e-40 151
Msa1008360 MtrunA17_Chr6g0462571 28.846 364 226 10 116 455 103 457 2.27e-40 150
Msa1008360 MtrunA17_Chr7g0232391 27.637 474 292 17 15 455 6 461 2.78e-40 150
Msa1008360 MtrunA17_Chr7g0243781 27.044 477 294 13 19 457 13 473 3.54e-40 150
Msa1008360 MtrunA17_Chr4g0044511 26.923 494 286 17 5 451 30 495 5.62e-40 150
Msa1008360 MtrunA17_Chr6g0462541 29.810 369 215 11 116 455 106 459 1.05e-39 149
Msa1008360 MtrunA17_Chr7g0265141 27.888 502 288 18 9 457 3 483 1.17e-39 149
Msa1008360 MtrunA17_Chr8g0334861 29.412 374 224 11 116 457 96 461 1.40e-39 148
Msa1008360 MtrunA17_Chr2g0307961 26.087 483 282 14 14 453 12 462 1.47e-39 148
Msa1008360 MtrunA17_Chr6g0462531 28.000 475 273 18 18 449 5 453 1.82e-39 148
Msa1008360 MtrunA17_Chr1g0153451 28.000 375 234 9 109 455 93 459 2.36e-39 147
Msa1008360 MtrunA17_Chr5g0429711 28.358 469 290 18 15 457 11 459 2.70e-39 147
Msa1008360 MtrunA17_Chr3g0079731 27.721 487 290 18 18 457 7 478 3.25e-39 147
Msa1008360 MtrunA17_Chr8g0339461 33.103 290 154 9 196 455 188 467 4.11e-39 147
Msa1008360 MtrunA17_Chr5g0431371 25.678 479 292 15 8 457 3 446 4.83e-39 146
Msa1008360 MtrunA17_Chr5g0442561 24.691 486 301 17 19 460 9 473 4.93e-39 147
Msa1008360 MtrunA17_Chr7g0232331 28.070 456 275 19 15 436 6 442 1.02e-38 146
Msa1008360 MtrunA17_Chr5g0440421 25.761 493 307 17 14 457 9 491 1.54e-38 146
Msa1008360 MtrunA17_Chr7g0235051 26.681 476 271 16 15 452 11 446 2.25e-38 145
Msa1008360 MtrunA17_Chr5g0442541 25.053 475 302 13 19 458 9 464 2.46e-38 145
Msa1008360 MtrunA17_Chr8g0339441 38.462 208 106 5 270 455 218 425 2.65e-38 144
Msa1008360 MtrunA17_Chr6g0462551 27.793 367 227 12 116 455 105 460 5.43e-38 144
Msa1008360 MtrunA17_Chr3g0106231 27.079 469 277 14 15 456 18 448 6.89e-38 144
Msa1008360 MtrunA17_Chr4g0066261 27.846 492 281 19 15 457 13 479 9.38e-38 144
Msa1008360 MtrunA17_Chr7g0232311 32.432 296 166 9 190 456 170 460 9.54e-38 143
Msa1008360 MtrunA17_Chr6g0454171 34.298 242 122 7 229 456 88 306 9.70e-38 140
Msa1008360 MtrunA17_Chr1g0153461 36.667 210 114 5 267 457 1 210 1.37e-37 136
Msa1008360 MtrunA17_Chr5g0442581 24.587 484 308 15 19 460 9 477 1.86e-37 144
Msa1008360 MtrunA17_Chr7g0243761 27.273 473 283 17 15 457 11 452 2.49e-37 142
Msa1008360 MtrunA17_Chr4g0066201 27.122 483 276 18 19 457 22 472 6.47e-37 141
Msa1008360 MtrunA17_Chr5g0442601 23.469 490 326 16 9 460 398 876 6.83e-37 144
Msa1008360 MtrunA17_Chr5g0442601 34.503 171 92 5 247 397 166 336 7.85e-24 105
Msa1008360 MtrunA17_Chr4g0044521 26.552 467 281 18 20 449 14 455 8.20e-37 140
Msa1008360 MtrunA17_Chr7g0265101 26.220 492 296 17 15 456 9 483 8.48e-37 141
Msa1008360 MtrunA17_Chr5g0419761 26.994 489 295 16 15 456 9 482 1.71e-36 140
Msa1008360 MtrunA17_Chr5g0442491 23.640 478 318 12 19 460 9 475 2.76e-36 139
Msa1008360 MtrunA17_Chr8g0336731 28.084 381 229 12 109 456 119 487 3.50e-36 139
Msa1008360 MtrunA17_Chr8g0336741 26.211 454 290 11 12 437 10 446 5.30e-36 138
Msa1008360 MtrunA17_Chr6g0462521 29.014 355 215 12 116 449 101 439 8.18e-36 137
Msa1008360 MtrunA17_Chr8g0339601 33.209 268 147 8 218 455 61 326 9.40e-36 135
Msa1008360 MtrunA17_Chr7g0232341 36.967 211 112 6 245 436 234 442 1.07e-35 137
Msa1008360 MtrunA17_Chr5g0442521 23.222 478 317 12 19 458 9 474 1.27e-35 137
Msa1008360 MtrunA17_Chr8g0355011 27.052 329 190 8 125 439 46 338 1.46e-35 135
Msa1008360 MtrunA17_Chr7g0265051 26.453 499 284 21 15 456 9 481 2.07e-35 137
Msa1008360 MtrunA17_Chr4g0066171 28.247 485 267 20 19 457 25 474 2.55e-35 137
Msa1008360 MtrunA17_Chr4g0066221 26.639 488 291 19 15 457 13 478 2.71e-35 137
Msa1008360 MtrunA17_Chr7g0265151 25.911 494 292 16 15 456 9 480 3.36e-35 136
Msa1008360 MtrunA17_Chr4g0066281 25.873 487 281 17 16 457 13 464 4.76e-35 136
Msa1008360 MtrunA17_Chr8g0366391 25.780 481 303 17 15 456 9 474 4.80e-35 136
Msa1008360 MtrunA17_Chr5g0419771 25.502 498 291 16 15 456 36 509 1.00e-34 135
Msa1008360 MtrunA17_Chr5g0403641 34.959 246 118 11 227 436 237 476 1.38e-34 135
Msa1008360 MtrunA17_Chr4g0044481 28.502 414 222 18 15 398 27 396 1.87e-34 133
Msa1008360 MtrunA17_Chr8g0361371 26.943 386 232 15 109 456 94 467 1.96e-34 134
Msa1008360 MtrunA17_Chr4g0072761 26.957 460 293 16 15 456 15 449 2.01e-34 134
Msa1008360 MtrunA17_Chr4g0066151 25.257 487 285 16 19 457 22 477 2.08e-34 134
Msa1008360 MtrunA17_Chr4g0011051 24.224 483 307 15 15 451 9 478 3.60e-34 134
Msa1008360 MtrunA17_Chr2g0329111 25.314 478 285 15 17 447 8 460 5.53e-34 133
Msa1008360 MtrunA17_Chr8g0339631 26.343 391 249 12 96 455 82 464 9.26e-34 132
Msa1008360 MtrunA17_Chr4g0072771 25.439 456 308 12 15 456 25 462 1.66e-33 131
Msa1008360 MtrunA17_Chr5g0432731 33.074 257 145 8 223 460 49 297 2.10e-33 127
Msa1008360 MtrunA17_Chr5g0448521 25.337 371 242 10 123 460 100 468 2.19e-33 131
Msa1008360 MtrunA17_Chr5g0429681 27.883 477 285 21 16 457 45 497 2.38e-33 131
Msa1008360 MtrunA17_Chr4g0066131 24.593 492 284 17 19 458 17 473 3.51e-33 130
Msa1008360 MtrunA17_Chr5g0410941 25.462 487 295 18 15 457 25 487 4.92e-33 130
Msa1008360 MtrunA17_Chr8g0382021 23.368 475 298 12 20 456 39 485 1.05e-32 129
Msa1008360 MtrunA17_Chr8g0334831 25.316 395 236 14 109 456 93 475 1.22e-32 129
Msa1008360 MtrunA17_Chr4g0014061 32.143 224 128 5 254 458 253 471 1.24e-32 129
Msa1008360 MtrunA17_Chr8g0336261 41.844 141 75 2 292 429 1 137 1.55e-32 120
Msa1008360 MtrunA17_Chr5g0442511 30.508 236 138 7 247 458 259 492 1.71e-32 129
Msa1008360 MtrunA17_Chr4g0029131 26.432 454 291 13 15 445 12 445 1.83e-32 130
Msa1008360 MtrunA17_Chr1g0159551 22.388 469 301 12 20 456 19 456 2.22e-32 128
Msa1008360 MtrunA17_Chr7g0243711 36.715 207 112 5 270 457 108 314 6.35e-32 124
Msa1008360 MtrunA17_Chr5g0401851 24.319 477 305 18 17 451 12 474 6.75e-32 127
Msa1008360 MtrunA17_Chr6g0454371 35.429 175 103 3 292 460 1 171 1.82e-31 119
Msa1008360 MtrunA17_Chr1g0173121 30.531 226 137 4 247 456 238 459 2.23e-31 125
Msa1008360 MtrunA17_Chr3g0106251 33.673 196 117 3 268 456 101 290 2.81e-31 122
Msa1008360 MtrunA17_Chr2g0294931 25.413 484 297 16 19 457 15 479 5.24e-31 125
Msa1008360 MtrunA17_Chr5g0428081 25.309 486 299 16 15 457 13 477 9.88e-31 124
Msa1008360 MtrunA17_Chr3g0079711 33.514 185 101 6 295 457 2 186 1.60e-30 117
Msa1008360 MtrunA17_Chr7g0218311 25.259 483 302 15 15 457 18 481 2.34e-30 123
Msa1008360 MtrunA17_Chr4g0044501 24.255 470 306 12 15 449 10 464 2.40e-30 122
Msa1008360 MtrunA17_Chr7g0243911 36.957 184 100 4 270 437 22 205 3.43e-30 117
Msa1008360 MtrunA17_Chr2g0302991 26.385 379 217 10 119 457 104 460 3.46e-30 122
Msa1008360 MtrunA17_Chr6g0463891 25.620 484 300 17 17 456 14 481 3.50e-30 122
Msa1008360 MtrunA17_Chr8g0367221 28.404 426 244 19 15 406 12 410 5.95e-30 124
Msa1008360 MtrunA17_Chr8g0367221 26.478 423 257 14 15 406 798 1197 2.25e-28 119
Msa1008360 MtrunA17_Chr8g0367221 25.111 450 292 13 15 437 1288 1719 5.44e-26 112
Msa1008360 MtrunA17_Chr6g0463861 26.025 488 285 21 15 456 13 470 7.07e-30 121
Msa1008360 MtrunA17_Chr7g0241781 26.234 385 235 12 15 387 9 356 1.57e-29 119
Msa1008360 MtrunA17_Chr5g0416741 23.124 493 301 14 17 457 15 481 1.88e-29 120
Msa1008360 MtrunA17_Chr5g0409591 35.359 181 98 4 270 431 275 455 1.89e-29 120
Msa1008360 MtrunA17_Chr7g0243851 33.816 207 118 4 270 457 234 440 4.19e-29 119
Msa1008360 MtrunA17_Chr6g0463851 24.847 491 298 18 15 457 13 480 7.28e-29 118
Msa1008360 MtrunA17_Chr8g0370941 31.148 244 128 7 248 454 243 483 1.43e-28 118
Msa1008360 MtrunA17_Chr1g0179901 29.752 242 141 6 248 460 253 494 1.54e-28 117
Msa1008360 MtrunA17_Chr8g0374931 24.893 466 295 17 15 453 13 450 1.79e-28 117
Msa1008360 MtrunA17_Chr8g0374901 25.052 483 298 16 18 457 15 476 1.90e-28 117
Msa1008360 MtrunA17_Chr7g0250021 28.701 331 189 12 15 323 12 317 2.17e-28 114
Msa1008360 MtrunA17_Chr7g0265111 33.333 207 118 6 270 456 306 512 2.23e-28 117
Msa1008360 MtrunA17_Chr8g0374971 25.514 486 294 18 18 457 15 478 3.18e-28 117
Msa1008360 MtrunA17_Chr2g0294921 25.052 479 309 17 15 456 162 627 3.33e-28 117
Msa1008360 MtrunA17_Chr8g0369341 24.947 469 315 16 15 456 7 465 3.52e-28 116
Msa1008360 MtrunA17_Chr7g0243811 25.500 400 242 14 27 397 1 373 4.13e-28 115
Msa1008360 MtrunA17_Chr2g0302961 30.638 235 140 6 243 457 232 463 4.52e-28 116
Msa1008360 MtrunA17_Chr1g0196851 24.784 464 289 17 15 445 49 485 6.43e-28 116
Msa1008360 MtrunA17_Chr4g0029151 28.326 466 267 18 15 445 20 453 1.48e-27 114
Msa1008360 MtrunA17_Chr7g0241801 24.726 457 290 15 15 458 9 424 1.75e-27 114
Msa1008360 MtrunA17_Chr5g0420801 24.094 469 311 15 15 457 7 456 2.25e-27 114
Msa1008360 MtrunA17_Chr8g0350881 24.805 512 269 17 16 457 13 478 8.68e-27 112
Msa1008360 MtrunA17_Chr7g0243611 28.269 283 166 8 136 398 5 270 1.01e-26 109
Msa1008360 MtrunA17_Chr8g0336251 25.602 457 281 13 15 436 7 439 1.47e-26 111
Msa1008360 MtrunA17_Chr2g0294941 34.831 178 94 4 270 426 166 342 1.47e-26 110
Msa1008360 MtrunA17_Chr8g0374941 25.532 470 271 20 18 437 14 454 2.19e-26 113
Msa1008360 MtrunA17_Chr8g0374941 30.374 214 122 6 270 457 1203 1415 1.38e-25 110
Msa1008360 MtrunA17_Chr8g0374941 23.747 459 293 12 18 437 479 919 1.02e-23 105
Msa1008360 MtrunA17_Chr2g0283041 27.027 444 258 22 15 425 7 417 3.75e-26 110
Msa1008360 MtrunA17_Chr8g0336321 25.821 457 280 14 15 436 7 439 3.76e-26 110
Msa1008360 MtrunA17_Chr8g0361411 23.950 476 295 15 15 456 8 450 9.69e-26 109
Msa1008360 MtrunA17_Chr2g0319761 27.215 474 270 18 15 449 8 445 1.70e-25 108
Msa1008360 MtrunA17_Chr4g0042931 31.579 228 133 7 247 457 240 461 2.15e-24 105
Msa1008360 MtrunA17_Chr8g0355221 28.947 266 151 8 227 457 222 484 5.24e-24 104
Msa1008360 MtrunA17_Chr4g0040711 32.609 184 114 4 272 445 261 444 6.28e-24 103
Msa1008360 MtrunA17_Chr4g0040691 33.152 184 113 4 272 445 261 444 7.58e-24 103
Msa1008360 MtrunA17_Chr1g0165701 28.906 256 154 8 228 457 228 481 1.29e-23 103
Msa1008360 MtrunA17_Chr4g0042891 30.702 228 131 5 247 457 246 463 2.72e-23 102
Msa1008360 MtrunA17_Chr1g0207881 38.060 134 76 3 330 456 248 381 3.03e-23 101
Msa1008360 MtrunA17_Chr6g0482061 30.000 260 155 8 201 438 204 458 4.86e-23 101
Msa1008360 MtrunA17_Chr7g0232351 38.514 148 72 5 245 376 234 378 6.07e-23 100
Msa1008360 MtrunA17_Chr6g0454231 27.982 218 107 6 243 449 29 207 6.32e-22 98.2
Msa1008360 MtrunA17_Chr6g0454231 28.659 164 108 2 14 173 249 407 1.30e-15 79.0
Msa1008360 MtrunA17_Chr8g0337381 36.585 123 76 2 338 458 3 125 7.61e-22 91.3
Msa1008360 MtrunA17_Chr2g0319751 25.771 454 288 14 15 443 485 914 1.11e-21 98.6
Msa1008360 MtrunA17_Chr2g0319751 23.904 456 279 19 15 445 8 420 1.23e-13 73.6
Msa1008360 MtrunA17_Chr5g0431431 26.379 417 213 17 15 419 10 344 2.07e-21 95.5
Msa1008360 MtrunA17_Chr4g0029161 25.333 450 273 15 15 445 12 417 3.17e-21 95.9
Msa1008360 MtrunA17_Chr5g0416821 22.083 480 311 15 17 457 16 471 1.49e-20 94.0
Msa1008360 MtrunA17_Chr8g0357361 35.211 142 87 4 270 407 118 258 3.00e-20 90.5
Msa1008360 MtrunA17_Chr5g0427571 29.915 234 134 7 227 436 46 273 3.01e-20 90.9
Msa1008360 MtrunA17_Chr2g0319791 26.940 464 279 21 15 445 8 444 3.84e-20 92.8
Msa1008360 MtrunA17_Chr2g0278721 23.841 453 298 13 15 437 517 952 6.33e-20 93.2
Msa1008360 MtrunA17_Chr2g0278721 23.778 450 293 14 15 437 15 441 5.74e-18 87.0
Msa1008360 MtrunA17_Chr6g0454281 32.143 168 102 3 14 174 9 171 9.84e-20 87.4
Msa1008360 MtrunA17_Chr5g0426411 30.952 168 108 3 14 178 11 173 3.20e-19 85.1
Msa1008360 MtrunA17_Chr3g0092031 33.125 160 99 5 272 426 6 162 1.17e-18 84.3
Msa1008360 MtrunA17_Chr4g0069611 24.062 453 261 17 15 426 15 425 2.83e-18 87.0
Msa1008360 MtrunA17_Chr2g0278741 24.222 450 291 13 15 437 97 523 2.91e-18 87.4
Msa1008360 MtrunA17_Chr6g0466841 22.551 439 285 12 15 426 18 428 3.14e-18 87.0
Msa1008360 MtrunA17_Chr6g0466831 22.581 465 303 14 15 454 18 450 5.08e-18 86.3
Msa1008360 MtrunA17_Chr2g0319731 25.597 461 284 18 15 445 25 456 1.32e-17 85.1
Msa1008360 MtrunA17_Chr2g0319801 25.216 464 282 15 15 445 8 439 1.51e-17 84.7
Msa1008360 MtrunA17_Chr4g0066141 34.307 137 76 3 335 457 213 349 1.99e-17 83.6
Msa1008360 MtrunA17_Chr7g0243731 46.575 73 38 1 335 406 6 78 4.17e-17 75.9
Msa1008360 MtrunA17_Chr7g0231631 26.054 261 149 8 227 457 11 257 4.64e-17 81.3
Msa1008360 MtrunA17_Chr2g0302851 23.543 429 293 11 15 426 16 426 7.38e-17 82.8
Msa1008360 MtrunA17_Chr2g0321331 32.222 180 94 7 277 445 91 253 5.35e-16 78.2
Msa1008360 MtrunA17_Chr6g0464091 36.232 138 81 4 272 405 279 413 1.02e-15 79.3
Msa1008360 MtrunA17_Chr4g0039881 23.239 426 278 13 25 426 2 402 3.13e-15 77.4
Msa1008360 MtrunA17_Chr6g0453981 43.011 93 45 2 233 317 113 205 4.67e-15 74.3
Msa1008360 MtrunA17_Chr8g0336271 27.778 162 109 2 15 173 10 166 2.06e-14 73.6
Msa1008360 MtrunA17_Chr8g0334841 43.011 93 49 2 243 335 64 152 3.52e-13 67.8
Msa1008360 MtrunA17_Chr6g0454391 42.029 69 36 1 351 419 11 75 7.98e-12 62.4
Msa1008360 MtrunA17_Chr6g0453941 51.724 58 28 0 260 317 201 258 2.97e-11 63.9
Msa1008360 MtrunA17_Chr3g0118741 46.552 58 26 1 14 71 5 57 4.81e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008360 AT3G02100.1 40.773 466 244 9 10 458 8 458 4.79e-125 372
Msa1008360 AT1G22340.1 32.075 477 282 14 14 457 12 479 2.12e-75 244
Msa1008360 AT1G22400.1 31.723 476 281 12 14 458 12 474 6.21e-74 241
Msa1008360 AT1G22360.1 32.983 476 276 14 15 457 10 475 2.63e-73 239
Msa1008360 AT1G78270.1 32.558 473 280 13 14 458 12 473 3.39e-73 239
Msa1008360 AT1G22380.1 31.513 476 285 13 14 457 12 478 5.05e-72 236
Msa1008360 AT1G22370.2 32.367 414 252 7 14 404 12 420 2.26e-70 231
Msa1008360 AT1G22360.2 33.793 435 249 12 15 416 10 438 1.74e-69 228
Msa1008360 AT3G22250.1 28.228 457 279 9 14 441 7 443 5.69e-65 216
Msa1008360 AT5G59590.1 30.323 465 285 13 10 457 5 447 2.66e-63 212
Msa1008360 AT3G21560.1 30.480 479 279 14 14 457 11 470 9.50e-62 209
Msa1008360 AT1G05675.1 30.258 466 281 12 15 457 6 450 2.41e-61 207
Msa1008360 AT1G05680.1 30.490 469 276 13 15 457 6 450 1.86e-60 204
Msa1008360 AT5G59580.1 29.701 468 288 15 8 457 1 445 2.15e-60 204
Msa1008360 AT3G46670.1 29.870 462 279 13 17 458 11 447 2.56e-60 204
Msa1008360 AT3G46660.1 28.884 457 292 11 17 458 16 454 8.88e-60 202
Msa1008360 AT3G11340.1 29.828 466 280 12 14 460 8 445 6.70e-59 200
Msa1008360 AT3G55700.1 31.250 464 275 16 15 457 8 448 1.24e-58 200
Msa1008360 AT4G15550.1 28.719 484 287 18 14 460 12 474 2.98e-57 196
Msa1008360 AT2G31750.1 29.741 464 280 10 17 456 10 451 3.33e-57 196
Msa1008360 AT2G31750.2 29.741 464 280 10 17 456 10 451 7.39e-57 196
Msa1008360 AT5G05880.1 28.755 466 280 14 17 458 10 447 4.42e-56 192
Msa1008360 AT3G46700.1 28.384 458 287 12 15 456 9 441 7.88e-56 192
Msa1008360 AT3G46690.1 29.221 462 288 14 15 457 9 450 2.31e-55 191
Msa1008360 AT5G05900.1 28.478 460 288 11 17 458 10 446 4.82e-55 190
Msa1008360 AT5G38040.1 29.890 455 270 14 25 457 20 447 6.06e-55 189
Msa1008360 AT3G46680.1 30.172 464 278 16 15 457 9 447 1.04e-54 189
Msa1008360 AT3G55710.1 30.769 468 280 15 13 457 6 452 8.85e-54 187
Msa1008360 AT4G15480.1 28.326 466 303 13 15 457 19 476 1.01e-53 187
Msa1008360 AT5G38010.1 28.842 475 273 13 15 457 10 451 1.08e-53 186
Msa1008360 AT2G43840.1 29.638 469 273 15 15 457 7 444 1.43e-53 186
Msa1008360 AT2G43840.2 29.424 469 274 15 15 457 7 444 2.10e-53 186
Msa1008360 AT4G15490.1 28.723 470 295 18 15 457 8 464 3.80e-53 186
Msa1008360 AT4G15500.1 28.571 476 293 16 10 457 4 460 4.17e-53 185
Msa1008360 AT2G23260.1 29.202 476 270 17 15 457 10 451 4.65e-53 185
Msa1008360 AT3G46650.1 27.669 459 284 11 15 460 10 433 1.48e-52 183
Msa1008360 AT1G05560.1 26.471 476 292 13 11 456 1 448 1.71e-52 184
Msa1008360 AT1G05560.2 26.415 477 293 13 10 456 50 498 2.43e-52 184
Msa1008360 AT2G36970.1 28.151 476 294 13 14 457 9 468 3.46e-52 183
Msa1008360 AT4G14090.1 27.646 463 295 12 14 457 12 453 1.21e-51 181
Msa1008360 AT3G46720.1 30.752 452 269 15 15 451 9 431 1.27e-51 181
Msa1008360 AT5G05860.1 28.200 461 289 12 15 457 9 445 3.60e-51 179
Msa1008360 AT2G30140.2 28.480 467 279 15 15 457 13 448 1.15e-50 178
Msa1008360 AT2G23250.1 28.571 455 274 13 25 457 8 433 1.56e-50 177
Msa1008360 AT2G26480.1 27.660 470 281 16 17 460 10 446 2.45e-50 177
Msa1008360 AT2G30140.1 28.358 469 278 16 15 457 13 449 2.61e-50 177
Msa1008360 AT2G43820.1 27.907 473 276 16 15 457 7 444 8.87e-49 173
Msa1008360 AT5G05890.1 28.785 469 284 15 15 458 8 451 1.02e-48 173
Msa1008360 AT5G05870.1 26.866 469 293 13 15 457 8 452 1.81e-48 172
Msa1008360 AT1G05530.1 27.010 485 281 15 11 456 1 451 1.94e-48 172
Msa1008360 AT2G31790.1 27.957 465 293 11 15 456 8 453 2.64e-48 172
Msa1008360 AT2G28080.1 26.681 461 303 14 19 457 22 469 5.14e-48 172
Msa1008360 AT2G30150.2 28.051 467 289 17 11 456 9 449 1.80e-45 164
Msa1008360 AT2G15490.1 28.067 481 286 16 15 451 7 471 1.98e-45 165
Msa1008360 AT2G15480.1 28.968 504 260 20 15 456 10 477 6.45e-45 164
Msa1008360 AT1G01420.1 28.692 474 282 17 14 452 7 459 1.82e-44 162
Msa1008360 AT1G01420.2 28.692 474 282 17 14 452 10 462 2.10e-44 162
Msa1008360 AT2G15490.3 28.092 477 288 16 15 451 7 468 2.23e-44 162
Msa1008360 AT3G16520.3 28.954 373 232 12 110 459 98 460 2.55e-44 161
Msa1008360 AT2G36800.1 28.074 488 289 16 15 456 12 483 2.86e-44 162
Msa1008360 AT1G22370.1 35.802 243 135 5 183 404 8 250 7.68e-44 156
Msa1008360 AT2G30150.1 28.105 459 283 17 19 456 1 433 4.15e-43 157
Msa1008360 AT3G16520.2 29.738 343 219 10 110 435 98 435 7.80e-43 157
Msa1008360 AT2G15480.2 29.134 508 253 21 15 451 10 481 7.91e-43 158
Msa1008360 AT3G16520.1 29.738 343 219 10 110 435 98 435 7.96e-43 157
Msa1008360 AT2G36760.1 26.327 490 284 15 15 451 14 479 5.98e-42 155
Msa1008360 AT2G36770.1 27.329 483 288 19 15 451 14 479 1.48e-41 154
Msa1008360 AT2G29740.1 26.964 471 310 14 15 457 8 472 2.95e-41 153
Msa1008360 AT3G21790.1 25.873 487 303 13 15 457 4 476 3.30e-41 154
Msa1008360 AT3G53160.1 26.994 489 278 20 15 449 8 471 7.64e-41 152
Msa1008360 AT1G24100.1 25.000 480 287 16 15 456 11 455 9.64e-41 152
Msa1008360 AT2G36780.1 27.044 477 297 17 15 451 14 479 1.06e-40 152
Msa1008360 AT4G01070.1 26.226 469 301 14 14 452 7 460 2.33e-40 151
Msa1008360 AT3G21750.1 24.324 481 308 14 15 457 4 466 1.72e-39 149
Msa1008360 AT4G34131.1 26.506 498 279 16 15 456 10 476 1.95e-39 149
Msa1008360 AT1G07250.1 25.902 471 313 12 15 456 6 469 3.56e-39 148
Msa1008360 AT4G34138.1 26.283 487 290 17 11 448 1 467 5.61e-39 147
Msa1008360 AT2G36790.1 27.273 484 297 15 15 456 13 483 2.84e-38 145
Msa1008360 AT3G21780.1 26.371 474 307 11 15 457 4 466 3.43e-38 145
Msa1008360 AT4G36770.1 28.879 464 260 21 15 437 4 438 4.17e-38 144
Msa1008360 AT2G36750.1 26.434 488 295 15 15 456 10 479 1.01e-37 144
Msa1008360 AT1G01390.1 28.238 471 289 18 14 452 7 460 1.33e-37 143
Msa1008360 AT1G01390.2 27.615 478 297 18 7 452 17 477 1.41e-37 144
Msa1008360 AT3G21760.1 25.934 482 311 12 15 457 4 478 2.28e-37 143
Msa1008360 AT4G15260.1 25.287 348 230 6 138 457 7 352 4.57e-37 139
Msa1008360 AT3G21800.1 22.756 479 322 9 16 457 6 473 4.95e-37 142
Msa1008360 AT4G15280.1 23.431 478 321 12 15 457 4 471 5.36e-37 142
Msa1008360 AT4G15280.2 23.431 478 321 12 15 457 36 503 1.04e-36 141
Msa1008360 AT2G29750.1 26.569 478 302 14 15 457 8 471 2.49e-36 140
Msa1008360 AT5G12890.1 27.071 495 290 20 15 460 10 482 4.36e-36 139
Msa1008360 AT5G17050.1 24.342 456 319 11 15 457 12 454 1.01e-35 138
Msa1008360 AT4G34135.1 25.813 461 259 15 15 422 11 441 2.65e-35 137
Msa1008360 AT1G07260.1 23.241 469 329 11 15 457 6 469 4.11e-34 134
Msa1008360 AT2G29730.1 25.527 474 302 18 15 456 5 459 6.87e-34 133
Msa1008360 AT3G53150.1 23.960 505 303 12 15 457 22 507 7.12e-34 134
Msa1008360 AT3G50740.1 25.918 463 283 14 14 437 6 447 3.81e-33 131
Msa1008360 AT5G26310.1 27.176 471 260 20 14 437 6 440 1.33e-32 129
Msa1008360 AT2G16890.2 25.979 485 279 18 15 452 9 460 2.36e-32 129
Msa1008360 AT5G66690.1 25.745 470 268 16 14 437 6 440 4.09e-32 128
Msa1008360 AT5G37950.1 27.548 363 227 9 30 376 1 343 4.71e-32 125
Msa1008360 AT5G37950.2 27.596 366 217 9 30 376 1 337 5.98e-32 125
Msa1008360 AT5G17040.1 23.810 462 318 11 11 460 1 440 1.15e-31 126
Msa1008360 AT5G03490.1 23.640 478 294 14 14 456 18 459 2.63e-31 125
Msa1008360 AT1G07240.1 23.395 483 322 16 11 456 1 472 3.99e-31 125
Msa1008360 AT2G18570.1 24.565 460 289 15 11 435 1 437 7.47e-31 124
Msa1008360 AT1G51210.1 25.221 452 272 17 14 437 19 432 1.40e-30 123
Msa1008360 AT2G18560.1 33.171 205 114 6 247 435 150 347 1.41e-30 122
Msa1008360 AT1G10400.1 25.793 473 302 17 15 457 7 460 1.63e-30 123
Msa1008360 AT5G17040.2 30.493 223 143 5 244 460 122 338 3.84e-30 120
Msa1008360 AT2G16890.3 25.835 449 257 16 15 420 9 424 3.87e-30 122
Msa1008360 AT5G17030.1 24.464 466 305 18 15 457 12 453 1.07e-29 121
Msa1008360 AT5G14860.1 23.789 475 297 14 15 451 8 455 1.25e-29 121
Msa1008360 AT2G29710.1 23.241 469 319 15 16 457 6 460 1.35e-29 120
Msa1008360 AT1G30530.1 23.179 453 309 14 21 457 19 448 1.56e-29 120
Msa1008360 AT1G73880.1 31.797 217 140 3 247 457 250 464 5.09e-29 119
Msa1008360 AT2G22930.1 25.740 439 283 17 15 436 6 418 5.18e-29 119
Msa1008360 AT5G49690.1 24.211 475 296 16 15 457 10 452 5.71e-29 119
Msa1008360 AT1G64910.1 25.107 466 297 17 15 457 6 442 2.29e-27 114
Msa1008360 AT5G53990.1 24.204 471 295 18 15 457 6 442 5.23e-27 113
Msa1008360 AT4G27560.1 24.700 417 271 13 15 414 7 397 7.92e-27 112
Msa1008360 AT5G65550.1 22.348 443 292 17 15 428 9 428 2.86e-26 111
Msa1008360 AT5G54010.1 24.313 473 291 17 15 457 6 441 2.41e-25 108
Msa1008360 AT4G27570.1 24.000 425 280 12 15 422 7 405 4.78e-25 107
Msa1008360 AT1G64920.1 24.211 475 294 17 15 457 6 446 5.51e-25 107
Msa1008360 AT3G29630.1 24.468 470 291 15 15 457 6 438 3.91e-22 99.0
Msa1008360 AT4G09500.2 23.110 463 303 18 15 457 6 435 5.85e-22 98.6
Msa1008360 AT1G50580.1 26.030 461 283 17 15 450 6 433 8.01e-22 98.2
Msa1008360 AT1G06000.1 29.329 283 169 12 199 456 154 430 5.27e-21 95.5
Msa1008360 AT3G29630.2 24.009 454 287 13 15 457 6 412 1.47e-20 94.0
Msa1008360 AT4G09500.1 31.765 170 106 5 278 437 225 394 7.93e-20 91.7
Msa1008360 AT2G22590.1 23.377 462 284 19 15 437 15 445 9.88e-20 92.0
Msa1008360 AT5G54060.1 24.729 461 300 18 25 457 23 464 5.04e-18 86.7
Msa1008360 AT4G01070.2 24.233 326 222 11 14 329 7 317 1.48e-14 75.1
Msa1008360 AT4G34135.2 23.229 353 199 12 15 324 11 334 1.28e-12 69.3
Msa1008360 AT2G23210.1 23.649 296 170 13 15 285 10 274 7.36e-12 66.2

Find 102 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATACCCATTTGATTGAAAA+TGG 0.194794 7_1:+8568275 None:intergenic
GTGTCCAGCTTTGGCATATT+TGG 0.212574 7_1:+8565865 None:intergenic
TATTATTGTTACCTTCAATA+TGG 0.223301 7_1:-8567911 Msa1008360:CDS
CTAAGGCTAATTCTTTAAAT+TGG 0.229806 7_1:+8565548 None:intergenic
GAATTAGACAAGGATGAAAA+TGG 0.235869 7_1:-8565235 Msa1008360:CDS
ACTCCATCATCAATTAGTTT+AGG 0.236606 7_1:+8567796 None:intergenic
CTCCATCATCAATTAGTTTA+GGG 0.245474 7_1:+8567797 None:intergenic
TGGTAGGAACTTTGGTGATA+TGG 0.260975 7_1:+8565714 None:intergenic
CTAATTCTTTAAATTGGTTT+TGG 0.262998 7_1:+8565554 None:intergenic
AATAATAATATTTCTATTGT+TGG 0.266027 7_1:-8568117 Msa1008360:CDS
GAGCTGAATTTCTTGATCTT+TGG 0.276157 7_1:+8565891 None:intergenic
GGACAAAGCTTAGGAATTAA+AGG 0.285150 7_1:-8567871 Msa1008360:CDS
CTAAAGGCAAGATCGTTAAT+TGG 0.299082 7_1:-8565432 Msa1008360:CDS
CCACCAATGTCCTAACTTCA+TGG 0.310232 7_1:+8565777 None:intergenic
GACTAGCTCAGCAACTTCTT+TGG 0.311316 7_1:-8567836 Msa1008360:CDS
AGAAATATTATTATTGTTGT+TGG 0.325606 7_1:+8568125 None:intergenic
TTGAAAATGGAAAATGAAAA+TGG 0.334251 7_1:+8568288 None:intergenic
CTTCAATATGGGATGGGCTT+TGG 0.339287 7_1:-8567899 Msa1008360:CDS
ACCAGAATATACACCTTCTA+TGG 0.339651 7_1:+8565339 None:intergenic
CATAGAAGATGTTAATGCTT+TGG 0.370749 7_1:-8567956 Msa1008360:CDS
TCTTCATCTTCCAAACCATC+TGG 0.377840 7_1:+8568048 None:intergenic
CTGGTAAACCTTTCTTGTGT+TGG 0.383314 7_1:-8565321 Msa1008360:CDS
ACCATAGAAGGTGTATATTC+TGG 0.392168 7_1:-8565340 Msa1008360:CDS
AGTGATCTTGCAGCCATGTT+TGG 0.392435 7_1:+8568179 None:intergenic
TTGGATAACATAGTAGAAAA+TGG 0.393196 7_1:-8565118 Msa1008360:CDS
GATTTATATGACCTGGGATT+GGG 0.397267 7_1:+8568229 None:intergenic
ATTATTGTTACCTTCAATAT+GGG 0.398070 7_1:-8567910 Msa1008360:CDS
GGTTGGAATTCTACCATAGA+AGG 0.402078 7_1:-8565352 Msa1008360:CDS
ATATGTTTCCTTCGGTAGTT+TGG 0.403181 7_1:-8565587 Msa1008360:CDS
CTTCGGTAGTTTGGCAGTAA+TGG 0.405126 7_1:-8565578 Msa1008360:CDS
TTGAGAAAATAACTTTCCTT+TGG 0.407054 7_1:+8568013 None:intergenic
TGTCACTCTCCCAGATGGTT+TGG 0.408682 7_1:-8568058 Msa1008360:CDS
AAGACATGACTTCCTTAGAT+TGG 0.418488 7_1:-8565639 Msa1008360:CDS
GGATTTATATGACCTGGGAT+TGG 0.419130 7_1:+8568228 None:intergenic
TTAGTTCCAAGGAATTCATC+AGG 0.421180 7_1:+8565451 None:intergenic
ATGGGATGGGCTTTGGAAGT+TGG 0.427573 7_1:-8567892 Msa1008360:CDS
TTAACATCTTCTATGAGCTT+AGG 0.431939 7_1:+8567964 None:intergenic
ACAGCAACAAAAGTTCATTC+TGG 0.432292 7_1:-8565666 Msa1008360:CDS
GAGATGCAAACCATGAAGTT+AGG 0.437422 7_1:-8565787 Msa1008360:CDS
TTGGAAGTTGGACAAAGCTT+AGG 0.440936 7_1:-8567880 Msa1008360:CDS
TCCATCATCAATGGGCCAAT+TGG 0.441886 7_1:+8565694 None:intergenic
CAATTTAAAGAATTAGCCTT+AGG 0.449998 7_1:-8565547 Msa1008360:CDS
ATTTGTGATGTGTGGAAGGT+TGG 0.452190 7_1:-8565262 Msa1008360:CDS
GGGCCAATTGGTAGGAACTT+TGG 0.452202 7_1:+8565706 None:intergenic
GCATACCCTGATGAATTCCT+TGG 0.453780 7_1:-8565457 Msa1008360:CDS
TAAAGGCAAGATCGTTAATT+GGG 0.466925 7_1:-8565431 Msa1008360:CDS
TTGCTTATCTAGCCAATCTA+AGG 0.467824 7_1:+8565627 None:intergenic
ATAAATTGATCAGTTGCAAA+TGG 0.468563 7_1:+8565298 None:intergenic
CTCTCCAAATATGCCAAAGC+TGG 0.471314 7_1:-8565869 Msa1008360:CDS
TCACCAAAGTTCCTACCAAT+TGG 0.471332 7_1:-8565709 Msa1008360:CDS
TGTGGCTGAATTCTGTGTTA+AGG 0.472295 7_1:+8568154 None:intergenic
GTTTCATTAGTCATTGTGGT+TGG 0.474452 7_1:-8565369 Msa1008360:CDS
ACCAATTGGCCCATTGATGA+TGG 0.475756 7_1:-8565695 Msa1008360:CDS
AATTAGACAAGGATGAAAAT+GGG 0.477251 7_1:-8565234 Msa1008360:CDS
ATATGACCTGGGATTGGGTA+TGG 0.477526 7_1:+8568234 None:intergenic
TCCAAAGAAAAGGCTTGTTA+AGG 0.478158 7_1:+8565515 None:intergenic
GCAAATGGCCAACACAAGAA+AGG 0.481754 7_1:+8565313 None:intergenic
CGATCTTGCCTTTAGTTCCA+AGG 0.484646 7_1:+8565440 None:intergenic
GATGAATTCCTTGGAACTAA+AGG 0.486930 7_1:-8565448 Msa1008360:CDS
AAAAGAAGAGATAAAGAAGA+AGG 0.488960 7_1:-8565203 Msa1008360:CDS
GGACGAACAATCCAAAGAAA+AGG 0.490004 7_1:+8565505 None:intergenic
TTTACCTTGTTGTCATTACT+CGG 0.492713 7_1:+8565484 None:intergenic
AGAAAGATCATTGAAACTAA+AGG 0.497391 7_1:-8565149 Msa1008360:CDS
TGTTACCTTCAATATGGGAT+GGG 0.503672 7_1:-8567905 Msa1008360:CDS
TTGTTACCTTCAATATGGGA+TGG 0.510585 7_1:-8567906 Msa1008360:CDS
GCTTGTTTCATTAGTCATTG+TGG 0.513693 7_1:-8565373 Msa1008360:CDS
CTTCATCTTCCAAACCATCT+GGG 0.517567 7_1:+8568049 None:intergenic
ATGAGGGGATTTATATGACC+TGG 0.518532 7_1:+8568222 None:intergenic
AGAAGAGATAAAGAAGAAGG+TGG 0.522824 7_1:-8565200 Msa1008360:CDS
TCTGTCGTATATGTTTCCTT+CGG 0.524672 7_1:-8565595 Msa1008360:CDS
ATCAAATACGATCTTGTCAA+AGG 0.528049 7_1:+8565822 None:intergenic
ATCCCTAAACTAATTGATGA+TGG 0.529148 7_1:-8567799 Msa1008360:CDS
CAAAGCCCATCCCATATTGA+AGG 0.533037 7_1:+8567900 None:intergenic
CTAATGAAACAAGCTATAGC+AGG 0.547241 7_1:+8565382 None:intergenic
AACTTTGTCACTCTCCCAGA+TGG 0.551842 7_1:-8568063 Msa1008360:CDS
GAAACATATACGACAGAATG+AGG 0.551900 7_1:+8565601 None:intergenic
CCATGAAGTTAGGACATTGG+TGG 0.558698 7_1:-8565777 Msa1008360:CDS
GTCATTCCATACCCAATCCC+AGG 0.558824 7_1:-8568240 Msa1008360:CDS
GAAACTAAAGGAGTTAACAT+TGG 0.559214 7_1:-8565137 Msa1008360:CDS
AATGGAAAATGAAAATGGCA+TGG 0.577695 7_1:+8568293 None:intergenic
AACATGACATAATTGCATGA+GGG 0.580442 7_1:+8568206 None:intergenic
TCTATGAGCTTAGGAAGCAA+AGG 0.590890 7_1:+8567973 None:intergenic
ATCTTGTCAAAGGTCCGCCA+TGG 0.592117 7_1:+8565832 None:intergenic
TCATCAATGGGCCAATTGGT+AGG 0.594029 7_1:+8565698 None:intergenic
TGAGGGGATTTATATGACCT+GGG 0.594731 7_1:+8568223 None:intergenic
AAACATGACATAATTGCATG+AGG 0.596705 7_1:+8568205 None:intergenic
GTTAAGGAGATCAAGTCCTA+AGG 0.597997 7_1:+8565531 None:intergenic
TAGTTCCAAGGAATTCATCA+GGG 0.601310 7_1:+8565452 None:intergenic
ACATGACATAATTGCATGAG+GGG 0.606077 7_1:+8568207 None:intergenic
GATGGAGTAATTGATTCAGC+AGG 0.610610 7_1:-8567781 Msa1008360:intron
ATATATTTGTGATGTGTGGA+AGG 0.614853 7_1:-8565266 Msa1008360:CDS
AGTCATATATTTGTGATGTG+TGG 0.621801 7_1:-8565270 Msa1008360:CDS
AAACCATGAAGTTAGGACAT+TGG 0.627911 7_1:-8565780 Msa1008360:CDS
GGTTGGATTTGAATTAGACA+AGG 0.633037 7_1:-8565245 Msa1008360:CDS
ATGGAATGACAAGAAAGTGA+GGG 0.641476 7_1:+8568253 None:intergenic
TATGGAATGACAAGAAAGTG+AGG 0.642099 7_1:+8568252 None:intergenic
TGAAACAAGCTATAGCAGGA+TGG 0.655376 7_1:+8565386 None:intergenic
ATGAGCTTAGGAAGCAAAGG+AGG 0.658953 7_1:+8567976 None:intergenic
CATTACTGCCAAACTACCGA+AGG 0.660154 7_1:+8565579 None:intergenic
AAGACAACAGAAGTGACCAA+AGG 0.664139 7_1:-8568029 Msa1008360:CDS
ACATATACGACAGAATGAGG+TGG 0.716919 7_1:+8565604 None:intergenic
TCGTCCGAGTAATGACAACA+AGG 0.724446 7_1:-8565488 Msa1008360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAATATTTCTATTGT+TGG - chr7_1:8565246-8565265 Msa1008360:CDS 10.0%
!!! CTATATATATTGATTTAAAA+CGG - chr7_1:8566968-8566987 Msa1008360:intron 10.0%
!! AGAAATATTATTATTGTTGT+TGG + chr7_1:8565241-8565260 None:intergenic 15.0%
!!! TTTTCTTTGTTTTGTTTTAT+TGG - chr7_1:8565618-8565637 Msa1008360:CDS 15.0%
!! GTTTGTATATATGATTAAAT+GGG + chr7_1:8565853-8565872 None:intergenic 15.0%
!! AGTTTGTATATATGATTAAA+TGG + chr7_1:8565854-8565873 None:intergenic 15.0%
!! TTAATATTGAAACTCATTTA+GGG + chr7_1:8566082-8566101 None:intergenic 15.0%
!! ATTAATATTGAAACTCATTT+AGG + chr7_1:8566083-8566102 None:intergenic 15.0%
!! ATATTAATTAAAATAACCAC+TGG - chr7_1:8566249-8566268 Msa1008360:intron 15.0%
!! TATTAATTAAAATAACCACT+GGG - chr7_1:8566250-8566269 Msa1008360:intron 15.0%
!!! AACTAATTAATTAAAGCTTT+TGG - chr7_1:8566568-8566587 Msa1008360:intron 15.0%
!!! ACTAATTAATTAAAGCTTTT+GGG - chr7_1:8566569-8566588 Msa1008360:intron 15.0%
!!! TGATTTAATTTATCTATTAC+AGG - chr7_1:8567441-8567460 Msa1008360:intron 15.0%
!! TTGAAAATGGAAAATGAAAA+TGG + chr7_1:8565078-8565097 None:intergenic 20.0%
!!! ATTTTCCATTTTCAATCAAA+TGG - chr7_1:8565083-8565102 Msa1008360:CDS 20.0%
!!! TTTTCCATTTTCAATCAAAT+GGG - chr7_1:8565084-8565103 Msa1008360:CDS 20.0%
!!! TTATTGTTTCTTCATTTTTG+AGG + chr7_1:8565281-8565300 None:intergenic 20.0%
!! TATTATTGTTACCTTCAATA+TGG - chr7_1:8565452-8565471 Msa1008360:CDS 20.0%
!! ATTATTGTTACCTTCAATAT+GGG - chr7_1:8565453-8565472 Msa1008360:CDS 20.0%
!!! ATTTTTTTAAAACTCACTTC+CGG - chr7_1:8565911-8565930 Msa1008360:intron 20.0%
!! GACAAATCAAGAAATAAATA+AGG + chr7_1:8566476-8566495 None:intergenic 20.0%
!!! TAATTAACCTTGTTTGATTT+TGG - chr7_1:8566854-8566873 Msa1008360:intron 20.0%
!! AATATATATAGCCTAAAACA+TGG + chr7_1:8566959-8566978 None:intergenic 20.0%
!!! CTAATTCTTTAAATTGGTTT+TGG + chr7_1:8567812-8567831 None:intergenic 20.0%
!! ATCTCAAAAACTTTATCAAT+TGG - chr7_1:8568282-8568301 Msa1008360:CDS 20.0%
!! TCTCAAAAACTTTATCAATT+GGG - chr7_1:8568283-8568302 Msa1008360:CDS 20.0%
! TTGAGAAAATAACTTTCCTT+TGG + chr7_1:8565353-8565372 None:intergenic 25.0%
!!! GAATTAAAGGTGTTTTTCTT+TGG - chr7_1:8565505-8565524 Msa1008360:CDS 25.0%
!!! ATTTTTGGAAATAGTCAAAG+TGG + chr7_1:8565675-8565694 None:intergenic 25.0%
!!! TTTTTTTTAAAACTCGGTTC+CGG - chr7_1:8565775-8565794 Msa1008360:CDS 25.0%
!!! AAAATAAAATGTTGGCTTTG+TGG + chr7_1:8566192-8566211 None:intergenic 25.0%
!!! TTTTCCTCAAGTTTTTTCTT+AGG - chr7_1:8566443-8566462 Msa1008360:intron 25.0%
!! TAAAATGTTTCTAACCACAA+TGG + chr7_1:8566707-8566726 None:intergenic 25.0%
! ATTTCAACCAAAATCAAACA+AGG + chr7_1:8566864-8566883 None:intergenic 25.0%
!!! TGTTTGATTTTGGTTGAAAT+CGG - chr7_1:8566864-8566883 Msa1008360:intron 25.0%
! TCAATGCTGCAAATATATTA+AGG - chr7_1:8567021-8567040 Msa1008360:intron 25.0%
! GTTAGTAGTTAATTCGTTAT+GGG + chr7_1:8567339-8567358 None:intergenic 25.0%
! TGTTAGTAGTTAATTCGTTA+TGG + chr7_1:8567340-8567359 None:intergenic 25.0%
! CTAAGGCTAATTCTTTAAAT+TGG + chr7_1:8567818-8567837 None:intergenic 25.0%
!!! CAATTTAAAGAATTAGCCTT+AGG - chr7_1:8567816-8567835 Msa1008360:CDS 25.0%
!!! TGGTTCAATATCTTTTTTTG+CGG + chr7_1:8567960-8567979 None:intergenic 25.0%
! ATAAATTGATCAGTTGCAAA+TGG + chr7_1:8568068-8568087 None:intergenic 25.0%
! AATTAGACAAGGATGAAAAT+GGG - chr7_1:8568129-8568148 Msa1008360:CDS 25.0%
! AAAAGAAGAGATAAAGAAGA+AGG - chr7_1:8568160-8568179 Msa1008360:CDS 25.0%
! AGAAAGATCATTGAAACTAA+AGG - chr7_1:8568214-8568233 Msa1008360:CDS 25.0%
! TTGGATAACATAGTAGAAAA+TGG - chr7_1:8568245-8568264 Msa1008360:CDS 25.0%
GATACCCATTTGATTGAAAA+TGG + chr7_1:8565091-8565110 None:intergenic 30.0%
AACATGACATAATTGCATGA+GGG + chr7_1:8565160-8565179 None:intergenic 30.0%
AAACATGACATAATTGCATG+AGG + chr7_1:8565161-8565180 None:intergenic 30.0%
!!! TGTCATGTTTTAACCAAACA+TGG - chr7_1:8565171-8565190 Msa1008360:CDS 30.0%
!!! TATTGTTGTTGGTTCTTTTG+TGG + chr7_1:8565230-8565249 None:intergenic 30.0%
TTAACATCTTCTATGAGCTT+AGG + chr7_1:8565402-8565421 None:intergenic 30.0%
CATAGAAGATGTTAATGCTT+TGG - chr7_1:8565407-8565426 Msa1008360:CDS 30.0%
ATCCCTAAACTAATTGATGA+TGG - chr7_1:8565564-8565583 Msa1008360:CDS 30.0%
! CTCCATCATCAATTAGTTTA+GGG + chr7_1:8565569-8565588 None:intergenic 30.0%
! ACTCCATCATCAATTAGTTT+AGG + chr7_1:8565570-8565589 None:intergenic 30.0%
!! CAGCAGACAGATTTAATTTT+TGG + chr7_1:8565690-8565709 None:intergenic 30.0%
TTATACATCTGGGTAAAGTT+TGG - chr7_1:8565715-8565734 Msa1008360:CDS 30.0%
AAAGTCAGAAACTAACAACT+AGG - chr7_1:8565993-8566012 Msa1008360:intron 30.0%
ATTAAAATAACCACTGGGTT+AGG - chr7_1:8566255-8566274 Msa1008360:intron 30.0%
TCCATTGGTAAAAAAAACGT+AGG - chr7_1:8566374-8566393 Msa1008360:intron 30.0%
!!! ACCTACGTTTTTTTTACCAA+TGG + chr7_1:8566378-8566397 None:intergenic 30.0%
ACTTCCTAAGAAAAAACTTG+AGG + chr7_1:8566450-8566469 None:intergenic 30.0%
!! ACTTTTTAGTAAAGCCATTG+TGG - chr7_1:8566690-8566709 Msa1008360:intron 30.0%
ACGTGAAAATAGTTCTTTGT+AGG - chr7_1:8567274-8567293 Msa1008360:intron 30.0%
TAGTTCTTTGTAGGATATCT+AGG - chr7_1:8567283-8567302 Msa1008360:intron 30.0%
GAGAGAGAAATATTTATAGC+AGG + chr7_1:8567317-8567336 None:intergenic 30.0%
ATCAAATACGATCTTGTCAA+AGG + chr7_1:8567544-8567563 None:intergenic 30.0%
!!! TGTCATTTTCCATCATCAAT+GGG + chr7_1:8567680-8567699 None:intergenic 30.0%
! TTTACCTTGTTGTCATTACT+CGG + chr7_1:8567882-8567901 None:intergenic 30.0%
TAAAGGCAAGATCGTTAATT+GGG - chr7_1:8567932-8567951 Msa1008360:CDS 30.0%
AGTCATATATTTGTGATGTG+TGG - chr7_1:8568093-8568112 Msa1008360:CDS 30.0%
ATATATTTGTGATGTGTGGA+AGG - chr7_1:8568097-8568116 Msa1008360:CDS 30.0%
GAATTAGACAAGGATGAAAA+TGG - chr7_1:8568128-8568147 Msa1008360:CDS 30.0%
GAAACTAAAGGAGTTAACAT+TGG - chr7_1:8568226-8568245 Msa1008360:CDS 30.0%
ATGGAATGACAAGAAAGTGA+GGG + chr7_1:8565113-8565132 None:intergenic 35.0%
TATGGAATGACAAGAAAGTG+AGG + chr7_1:8565114-8565133 None:intergenic 35.0%
GATTTATATGACCTGGGATT+GGG + chr7_1:8565137-8565156 None:intergenic 35.0%
ACATGACATAATTGCATGAG+GGG + chr7_1:8565159-8565178 None:intergenic 35.0%
TTGTTACCTTCAATATGGGA+TGG - chr7_1:8565457-8565476 Msa1008360:CDS 35.0%
TGTTACCTTCAATATGGGAT+GGG - chr7_1:8565458-8565477 Msa1008360:CDS 35.0%
GGACAAAGCTTAGGAATTAA+AGG - chr7_1:8565492-8565511 Msa1008360:CDS 35.0%
! TGCTGTGTTGTTATACATCT+GGG - chr7_1:8565705-8565724 Msa1008360:CDS 35.0%
ATTGGACACCTCAGATTAAT+CGG + chr7_1:8565809-8565828 None:intergenic 35.0%
! CTTGAGAGAAGTACACTTTA+AGG - chr7_1:8566029-8566048 Msa1008360:intron 35.0%
AATCTTGATGAGGTATGCTT+TGG + chr7_1:8566351-8566370 None:intergenic 35.0%
CAATGGAGATAATCTTGATG+AGG + chr7_1:8566361-8566380 None:intergenic 35.0%
CTCATCAAGATTATCTCCAT+TGG - chr7_1:8566359-8566378 Msa1008360:intron 35.0%
CCTTAGTTCAATAAGTTGTG+AGG + chr7_1:8566618-8566637 None:intergenic 35.0%
CCTCACAACTTATTGAACTA+AGG - chr7_1:8566615-8566634 Msa1008360:intron 35.0%
! GGAAGTACAAATGTACAATG+TGG - chr7_1:8566885-8566904 Msa1008360:intron 35.0%
! CTACACAAGTACCATGTTTT+AGG - chr7_1:8566945-8566964 Msa1008360:intron 35.0%
TTAAGGTAGAGATGTTCTAC+AGG - chr7_1:8567038-8567057 Msa1008360:intron 35.0%
TAAGGTAGAGATGTTCTACA+GGG - chr7_1:8567039-8567058 Msa1008360:intron 35.0%
ATGATAGTTTCATGTGGTCT+CGG + chr7_1:8567070-8567089 None:intergenic 35.0%
AGACACATGATAGTTTCATG+TGG + chr7_1:8567076-8567095 None:intergenic 35.0%
! ATTTTACAGTTGCAGTATGG+TGG + chr7_1:8567205-8567224 None:intergenic 35.0%
! GGTATTTTACAGTTGCAGTA+TGG + chr7_1:8567208-8567227 None:intergenic 35.0%
CAAGTAAGGTGGAGTTTAAT+AGG + chr7_1:8567367-8567386 None:intergenic 35.0%
CTAAGAATCCAAGACAAGTA+AGG + chr7_1:8567381-8567400 None:intergenic 35.0%
GAGCTGAATTTCTTGATCTT+TGG + chr7_1:8567475-8567494 None:intergenic 35.0%
AAACCATGAAGTTAGGACAT+TGG - chr7_1:8567583-8567602 Msa1008360:intron 35.0%
!!! CTGTCATTTTCCATCATCAA+TGG + chr7_1:8567681-8567700 None:intergenic 35.0%
ACAGCAACAAAAGTTCATTC+TGG - chr7_1:8567697-8567716 Msa1008360:intron 35.0%
AAGACATGACTTCCTTAGAT+TGG - chr7_1:8567724-8567743 Msa1008360:intron 35.0%
TTGCTTATCTAGCCAATCTA+AGG + chr7_1:8567739-8567758 None:intergenic 35.0%
GAAACATATACGACAGAATG+AGG + chr7_1:8567765-8567784 None:intergenic 35.0%
TCTGTCGTATATGTTTCCTT+CGG - chr7_1:8567768-8567787 Msa1008360:intron 35.0%
ATATGTTTCCTTCGGTAGTT+TGG - chr7_1:8567776-8567795 Msa1008360:intron 35.0%
! TCCTTAACAAGCCTTTTCTT+TGG - chr7_1:8567847-8567866 Msa1008360:CDS 35.0%
!! TCCAAAGAAAAGGCTTGTTA+AGG + chr7_1:8567851-8567870 None:intergenic 35.0%
TAGTTCCAAGGAATTCATCA+GGG + chr7_1:8567914-8567933 None:intergenic 35.0%
TTAGTTCCAAGGAATTCATC+AGG + chr7_1:8567915-8567934 None:intergenic 35.0%
GATGAATTCCTTGGAACTAA+AGG - chr7_1:8567915-8567934 Msa1008360:CDS 35.0%
CTAAAGGCAAGATCGTTAAT+TGG - chr7_1:8567931-8567950 Msa1008360:CDS 35.0%
CTAATGAAACAAGCTATAGC+AGG + chr7_1:8567984-8568003 None:intergenic 35.0%
GCTTGTTTCATTAGTCATTG+TGG - chr7_1:8567990-8568009 Msa1008360:CDS 35.0%
GTTTCATTAGTCATTGTGGT+TGG - chr7_1:8567994-8568013 Msa1008360:CDS 35.0%
! ACCATAGAAGGTGTATATTC+TGG - chr7_1:8568023-8568042 Msa1008360:CDS 35.0%
ACCAGAATATACACCTTCTA+TGG + chr7_1:8568027-8568046 None:intergenic 35.0%
GGTTGGATTTGAATTAGACA+AGG - chr7_1:8568118-8568137 Msa1008360:CDS 35.0%
AGAAGAGATAAAGAAGAAGG+TGG - chr7_1:8568163-8568182 Msa1008360:CDS 35.0%
GGATTTATATGACCTGGGAT+TGG + chr7_1:8565138-8565157 None:intergenic 40.0%
TGAGGGGATTTATATGACCT+GGG + chr7_1:8565143-8565162 None:intergenic 40.0%
ATGAGGGGATTTATATGACC+TGG + chr7_1:8565144-8565163 None:intergenic 40.0%
TGTGGCTGAATTCTGTGTTA+AGG + chr7_1:8565212-8565231 None:intergenic 40.0%
CTTCATCTTCCAAACCATCT+GGG + chr7_1:8565317-8565336 None:intergenic 40.0%
TCTTCATCTTCCAAACCATC+TGG + chr7_1:8565318-8565337 None:intergenic 40.0%
AAGACAACAGAAGTGACCAA+AGG - chr7_1:8565334-8565353 Msa1008360:CDS 40.0%
TCTATGAGCTTAGGAAGCAA+AGG + chr7_1:8565393-8565412 None:intergenic 40.0%
TTGGAAGTTGGACAAAGCTT+AGG - chr7_1:8565483-8565502 Msa1008360:CDS 40.0%
! GATGGAGTAATTGATTCAGC+AGG - chr7_1:8565582-8565601 Msa1008360:CDS 40.0%
! CTGCTGTGTTGTTATACATC+TGG - chr7_1:8565704-8565723 Msa1008360:CDS 40.0%
TTTAAATGACCCCCCACAAA+TGG + chr7_1:8565976-8565995 None:intergenic 40.0%
TCCCAAACTAACAACTAGCT+AGG - chr7_1:8566052-8566071 Msa1008360:intron 40.0%
! GCCTAGCTAGTTGTTAGTTT+GGG + chr7_1:8566056-8566075 None:intergenic 40.0%
! TGGGTTAGGTTTAGCAAACA+GGG - chr7_1:8566269-8566288 Msa1008360:intron 40.0%
TGAATGTAGGGTAGCTTATG+AGG - chr7_1:8566295-8566314 Msa1008360:intron 40.0%
TGTTGAATTGTATTGCCGTG+TGG - chr7_1:8566776-8566795 Msa1008360:intron 40.0%
GTTGAATTGTATTGCCGTGT+GGG - chr7_1:8566777-8566796 Msa1008360:intron 40.0%
TGGTACTCTCACAAGTACTT+GGG - chr7_1:8566905-8566924 Msa1008360:intron 40.0%
CTTGGGTGTAGTACATCTAA+AGG - chr7_1:8566922-8566941 Msa1008360:intron 40.0%
TGATAGTTTCATGTGGTCTC+GGG + chr7_1:8567069-8567088 None:intergenic 40.0%
! ACATGTCACTTGGAAGCAAA+AGG + chr7_1:8567159-8567178 None:intergenic 40.0%
TTTGCTTCCAAGTGACATGT+TGG - chr7_1:8567159-8567178 Msa1008360:intron 40.0%
!! CTTCTGAGACGAAGAACATT+CGG + chr7_1:8567229-8567248 None:intergenic 40.0%
AAACTCCACCTTACTTGTCT+TGG - chr7_1:8567370-8567389 Msa1008360:intron 40.0%
AGAATCCAAGACAAGTAAGG+TGG + chr7_1:8567378-8567397 None:intergenic 40.0%
!!! ACGTTTTTAGTGTCCAGCTT+TGG + chr7_1:8567510-8567529 None:intergenic 40.0%
TGGACACTAAAAACGTTCCA+TGG - chr7_1:8567514-8567533 Msa1008360:intron 40.0%
ACACTAAAAACGTTCCATGG+CGG - chr7_1:8567517-8567536 Msa1008360:intron 40.0%
GAGATGCAAACCATGAAGTT+AGG - chr7_1:8567576-8567595 Msa1008360:intron 40.0%
! TGGTAGGAACTTTGGTGATA+TGG + chr7_1:8567652-8567671 None:intergenic 40.0%
TCACCAAAGTTCCTACCAAT+TGG - chr7_1:8567654-8567673 Msa1008360:intron 40.0%
ACATATACGACAGAATGAGG+TGG + chr7_1:8567762-8567781 None:intergenic 40.0%
GTTAAGGAGATCAAGTCCTA+AGG + chr7_1:8567835-8567854 None:intergenic 40.0%
GGACGAACAATCCAAAGAAA+AGG + chr7_1:8567861-8567880 None:intergenic 40.0%
TGAAACAAGCTATAGCAGGA+TGG + chr7_1:8567980-8567999 None:intergenic 40.0%
GGTTGGAATTCTACCATAGA+AGG - chr7_1:8568011-8568030 Msa1008360:CDS 40.0%
CTGGTAAACCTTTCTTGTGT+TGG - chr7_1:8568042-8568061 Msa1008360:CDS 40.0%
ATTTGTGATGTGTGGAAGGT+TGG - chr7_1:8568101-8568120 Msa1008360:CDS 40.0%
ATATGACCTGGGATTGGGTA+TGG + chr7_1:8565132-8565151 None:intergenic 45.0%
AGTGATCTTGCAGCCATGTT+TGG + chr7_1:8565187-8565206 None:intergenic 45.0%
AACTTTGTCACTCTCCCAGA+TGG - chr7_1:8565300-8565319 Msa1008360:CDS 45.0%
ATGAGCTTAGGAAGCAAAGG+AGG + chr7_1:8565390-8565409 None:intergenic 45.0%
CAAAGCCCATCCCATATTGA+AGG + chr7_1:8565466-8565485 None:intergenic 45.0%
! CTTCAATATGGGATGGGCTT+TGG - chr7_1:8565464-8565483 Msa1008360:CDS 45.0%
! GACTAGCTCAGCAACTTCTT+TGG - chr7_1:8565527-8565546 Msa1008360:CDS 45.0%
! CCTCAGATTAATCGGCTCTT+GGG + chr7_1:8565801-8565820 None:intergenic 45.0%
! ACCTCAGATTAATCGGCTCT+TGG + chr7_1:8565802-8565821 None:intergenic 45.0%
CAATACCACCGTCCATTTGT+GGG - chr7_1:8565825-8565844 Msa1008360:CDS 45.0%
AATACCACCGTCCATTTGTG+GGG - chr7_1:8565826-8565845 Msa1008360:CDS 45.0%
ATTAAATGGGCCCCCACAAA+TGG + chr7_1:8565840-8565859 None:intergenic 45.0%
! CCTCAGATTAGTCGACTCTT+GGG + chr7_1:8565937-8565956 None:intergenic 45.0%
! ACCTCAGATTAGTCGACTCT+TGG + chr7_1:8565938-8565957 None:intergenic 45.0%
CAATCCCACTGTCCATTTGT+GGG - chr7_1:8565961-8565980 Msa1008360:intron 45.0%
AATCCCACTGTCCATTTGTG+GGG - chr7_1:8565962-8565981 Msa1008360:intron 45.0%
TTCTCTCAAGATCTCGAGGT+TGG + chr7_1:8566019-8566038 None:intergenic 45.0%
GTACTTCTCTCAAGATCTCG+AGG + chr7_1:8566023-8566042 None:intergenic 45.0%
CGCCTAGCTAGTTGTTAGTT+TGG + chr7_1:8566057-8566076 None:intergenic 45.0%
!! TGTTGGCTTTGTGGTTGAGT+GGG + chr7_1:8566183-8566202 None:intergenic 45.0%
!! ATGTTGGCTTTGTGGTTGAG+TGG + chr7_1:8566184-8566203 None:intergenic 45.0%
! GTTTGCTAAACCTAACCCAG+TGG + chr7_1:8566268-8566287 None:intergenic 45.0%
! CTGGGTTAGGTTTAGCAAAC+AGG - chr7_1:8566268-8566287 Msa1008360:intron 45.0%
GGGTTAGGTTTAGCAAACAG+GGG - chr7_1:8566270-8566289 Msa1008360:intron 45.0%
CAAACAGGGGACTGAATGTA+GGG - chr7_1:8566283-8566302 Msa1008360:intron 45.0%
TTGTATTGCCGTGTGGGTAA+CGG - chr7_1:8566783-8566802 Msa1008360:intron 45.0%
ACAACTTTCCGTTACCCACA+CGG + chr7_1:8566794-8566813 None:intergenic 45.0%
GTGGTACTCTCACAAGTACT+TGG - chr7_1:8566904-8566923 Msa1008360:intron 45.0%
TACCCATCTCATGTGTTCTC+AGG - chr7_1:8567100-8567119 Msa1008360:intron 45.0%
GACCTGAGAACACATGAGAT+GGG + chr7_1:8567105-8567124 None:intergenic 45.0%
! TGGAAGCAAAAGGTGCATTG+CGG + chr7_1:8567149-8567168 None:intergenic 45.0%
TCATGAGCCAACATGTCACT+TGG + chr7_1:8567169-8567188 None:intergenic 45.0%
TTACAGTTGCAGTATGGTGG+TGG + chr7_1:8567202-8567221 None:intergenic 45.0%
CGAATGTTCTTCGTCTCAGA+AGG - chr7_1:8567227-8567246 Msa1008360:intron 45.0%
CTCTCCAAATATGCCAAAGC+TGG - chr7_1:8567494-8567513 Msa1008360:intron 45.0%
! GTGTCCAGCTTTGGCATATT+TGG + chr7_1:8567501-8567520 None:intergenic 45.0%
CCACCAATGTCCTAACTTCA+TGG + chr7_1:8567589-8567608 None:intergenic 45.0%
CCATGAAGTTAGGACATTGG+TGG - chr7_1:8567586-8567605 Msa1008360:intron 45.0%
TCATCAATGGGCCAATTGGT+AGG + chr7_1:8567668-8567687 None:intergenic 45.0%
ACCAATTGGCCCATTGATGA+TGG - chr7_1:8567668-8567687 Msa1008360:intron 45.0%
TCCATCATCAATGGGCCAAT+TGG + chr7_1:8567672-8567691 None:intergenic 45.0%
CATTACTGCCAAACTACCGA+AGG + chr7_1:8567787-8567806 None:intergenic 45.0%
CTTCGGTAGTTTGGCAGTAA+TGG - chr7_1:8567785-8567804 Msa1008360:CDS 45.0%
TCGTCCGAGTAATGACAACA+AGG - chr7_1:8567875-8567894 Msa1008360:CDS 45.0%
GCATACCCTGATGAATTCCT+TGG - chr7_1:8567906-8567925 Msa1008360:CDS 45.0%
! CGATCTTGCCTTTAGTTCCA+AGG + chr7_1:8567926-8567945 None:intergenic 45.0%
GCAAATGGCCAACACAAGAA+AGG + chr7_1:8568053-8568072 None:intergenic 45.0%
!!! TTTTTATTTTTTTTAAAACT+CGG - chr7_1:8565769-8565788 Msa1008360:CDS 5.0%
!! TAAAAATAAAAATAAAATGT+TGG + chr7_1:8566200-8566219 None:intergenic 5.0%
GTCATTCCATACCCAATCCC+AGG - chr7_1:8565123-8565142 Msa1008360:CDS 50.0%
TGTCACTCTCCCAGATGGTT+TGG - chr7_1:8565305-8565324 Msa1008360:CDS 50.0%
!! ATGGGATGGGCTTTGGAAGT+TGG - chr7_1:8565471-8565490 Msa1008360:CDS 50.0%
! AGATTAATCGGCTCTTGGGC+CGG + chr7_1:8565797-8565816 None:intergenic 50.0%
CCCAAGAGCCGATTAATCTG+AGG - chr7_1:8565798-8565817 Msa1008360:CDS 50.0%
CCACAAATGGACGGTGGTAT+TGG + chr7_1:8565827-8565846 None:intergenic 50.0%
CCAATACCACCGTCCATTTG+TGG - chr7_1:8565824-8565843 Msa1008360:CDS 50.0%
ATACCACCGTCCATTTGTGG+GGG - chr7_1:8565827-8565846 Msa1008360:CDS 50.0%
! AGATTAGTCGACTCTTGGGC+CGG + chr7_1:8565933-8565952 None:intergenic 50.0%
CCCAAGAGTCGACTAATCTG+AGG - chr7_1:8565934-8565953 Msa1008360:intron 50.0%
CCACAAATGGACAGTGGGAT+TGG + chr7_1:8565963-8565982 None:intergenic 50.0%
CCAATCCCACTGTCCATTTG+TGG - chr7_1:8565960-8565979 Msa1008360:intron 50.0%
ATCCCACTGTCCATTTGTGG+GGG - chr7_1:8565963-8565982 Msa1008360:intron 50.0%
GAATCAGCGTGGTCTAGTCT+CGG + chr7_1:8566152-8566171 None:intergenic 50.0%
GGGAGAGTTAAGAATCAGCG+TGG + chr7_1:8566163-8566182 None:intergenic 50.0%
GCAAACAGGGGACTGAATGT+AGG - chr7_1:8566282-8566301 Msa1008360:intron 50.0%
AGTTTCATGTGGTCTCGGGT+CGG + chr7_1:8567065-8567084 None:intergenic 50.0%
CGACCTGAGAACACATGAGA+TGG + chr7_1:8567106-8567125 None:intergenic 50.0%
CGGTAGAGAAAGTTCAGCAG+GGG + chr7_1:8567129-8567148 None:intergenic 50.0%
GCGGTAGAGAAAGTTCAGCA+GGG + chr7_1:8567130-8567149 None:intergenic 50.0%
TGCGGTAGAGAAAGTTCAGC+AGG + chr7_1:8567131-8567150 None:intergenic 50.0%
ATCTTGTCAAAGGTCCGCCA+TGG + chr7_1:8567534-8567553 None:intergenic 50.0%
GGGCCAATTGGTAGGAACTT+TGG + chr7_1:8567660-8567679 None:intergenic 50.0%
AATGGGCCCCCACAAATGGA+CGG + chr7_1:8565836-8565855 None:intergenic 55.0%
TCCCACTGTCCATTTGTGGG+GGG - chr7_1:8565964-8565983 Msa1008360:intron 55.0%
ACCCCCCACAAATGGACAGT+GGG + chr7_1:8565968-8565987 None:intergenic 55.0%
GACCCCCCACAAATGGACAG+TGG + chr7_1:8565969-8565988 None:intergenic 60.0%
GGGCCCCCACAAATGGACGG+TGG + chr7_1:8565833-8565852 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 8565072 8568313 8565072 ID=Msa1008360;Name=Msa1008360
chr7_1 mRNA 8565072 8568313 8565072 ID=Msa1008360-mRNA-1;Parent=Msa1008360;Name=Msa1008360-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|1|0|1|1|1|2|0|460
chr7_1 exon 8567782 8568313 8567782 ID=Msa1008360-mRNA-1:exon:2541;Parent=Msa1008360-mRNA-1
chr7_1 exon 8565072 8565922 8565072 ID=Msa1008360-mRNA-1:exon:2540;Parent=Msa1008360-mRNA-1
chr7_1 CDS 8567782 8568313 8567782 ID=Msa1008360-mRNA-1:cds;Parent=Msa1008360-mRNA-1
chr7_1 CDS 8565072 8565922 8565072 ID=Msa1008360-mRNA-1:cds;Parent=Msa1008360-mRNA-1
Gene Sequence

>Msa1008360

ATGCCATTTTCATTTTCCATTTTCAATCAAATGGGTATCCCTCACTTTCTTGTCATTCCATACCCAATCCCAGGTCATATAAATCCCCTCATGCAATTATGTCATGTTTTAACCAAACATGGCTGCAAGATCACTTTCCTTAACACAGAATTCAGCCACAAAAGAACCAACAACAATAATAATATTTCTATTGTTGGAAAAGACAACCTCAAAAATGAAGAAACAATAAACTTTGTCACTCTCCCAGATGGTTTGGAAGATGAAGACAACAGAAGTGACCAAAGGAAAGTTATTTTCTCAATCAAAAGAAACATGCCTCCTTTGCTTCCTAAGCTCATAGAAGATGTTAATGCTTTGGATGCTGAAAATAAGATTTCTTGTATTATTGTTACCTTCAATATGGGATGGGCTTTGGAAGTTGGACAAAGCTTAGGAATTAAAGGTGTTTTTCTTTGGACTAGCTCAGCAACTTCTTTGGCTTATTGTTATAGCATCCCTAAACTAATTGATGATGGAGTAATTGATTCAGCAGGAATTTATACCAAAGATCAAGAAATTCAGCTCTCTCCAAATATGCCAAAGCTGGACACTAAAAACGTTCCATGGCGGACCTTTGACAAGATCGTATTTGATCATCTTGCACAAGAGATGCAAACCATGAAGTTAGGACATTGGTGGCTTTGCAACACAACTTATGATCTTGAGCAAGCAACATTTTCCATATCACCAAAGTTCCTACCAATTGGCCCATTGATGATGGAAAATGACAGCAACAAAAGTTCATTCTGGCAAGAAGACATGACTTCCTTAGATTGGCTAGATAAGCAACCACCTCATTCTGTCGTATATGTTTCCTTCGGTAGTTTGGCAGTAATGGACCAAAACCAATTTAAAGAATTAGCCTTAGGACTTGATCTCCTTAACAAGCCTTTTCTTTGGATTGTTCGTCCGAGTAATGACAACAAGGTAAACTACGCATACCCTGATGAATTCCTTGGAACTAAAGGCAAGATCGTTAATTGGGCACCGCAAAAAAAGATATTGAACCATCCTGCTATAGCTTGTTTCATTAGTCATTGTGGTTGGAATTCTACCATAGAAGGTGTATATTCTGGTAAACCTTTCTTGTGTTGGCCATTTGCAACTGATCAATTTATGAACAAGTCATATATTTGTGATGTGTGGAAGGTTGGATTTGAATTAGACAAGGATGAAAATGGGCTAGTACTAAAAGAAGAGATAAAGAAGAAGGTGGAACAATTGCTTGATGATCAAGATGTAAAAGAAAGATCATTGAAACTAAAGGAGTTAACATTGGATAACATAGTAGAAAATGGTCAATCTTCGAAGAATCTCAAAAACTTTATCAATTGGGCAATGTAA
Protein sequence

>Msa1008360

MPFSFSIFNQMGIPHFLVIPYPIPGHINPLMQLCHVLTKHGCKITFLNTEFSHKRTNNNNNISIVGKDNLKNEETINFVTLPDGLEDEDNRSDQRKVIFSIKRNMPPLLPKLIEDVNALDAENKISCIIVTFNMGWALEVGQSLGIKGVFLWTSSATSLAYCYSIPKLIDDGVIDSAGIYTKDQEIQLSPNMPKLDTKNVPWRTFDKIVFDHLAQEMQTMKLGHWWLCNTTYDLEQATFSISPKFLPIGPLMMENDSNKSSFWQEDMTSLDWLDKQPPHSVVYVSFGSLAVMDQNQFKELALGLDLLNKPFLWIVRPSNDNKVNYAYPDEFLGTKGKIVNWAPQKKILNHPAIACFISHCGWNSTIEGVYSGKPFLCWPFATDQFMNKSYICDVWKVGFELDKDENGLVLKEEIKKKVEQLLDDQDVKERSLKLKELTLDNIVENGQSSKNLKNFINWAM*