AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1050550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1050550 MtrunA17_Chr8g0341721 92.982 171 9 1 1 168 41 211 1.84e-117 333
Msa1050550 MtrunA17_Chr8g0341701 83.626 171 25 1 1 168 41 211 2.25e-105 302
Msa1050550 MtrunA17_Chr8g0341741 81.977 172 27 2 1 168 41 212 1.64e-102 295
Msa1050550 MtrunA17_Chr8g0341731 80.814 172 29 2 1 168 41 212 6.93e-102 293
Msa1050550 MtrunA17_Chr2g0330511 78.363 171 33 2 1 168 40 209 2.21e-97 282
Msa1050550 MtrunA17_Chr2g0309111 76.608 171 37 1 1 168 84 254 7.78e-95 277
Msa1050550 MtrunA17_Chr2g0330491 61.176 170 63 1 1 167 40 209 9.18e-74 222
Msa1050550 MtrunA17_Chr8g0389271 58.721 172 67 3 1 168 38 209 4.77e-69 209
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1050550 AT1G17710.1 70.760 171 46 1 1 167 43 213 1.84e-88 260
Msa1050550 AT1G17710.2 69.231 169 48 1 3 167 13 181 1.14e-84 249
Msa1050550 AT1G73010.1 68.023 172 50 2 1 167 50 221 1.22e-84 251
Msa1050550 AT4G29530.1 55.422 166 70 1 1 162 40 205 2.31e-67 205
Msa1050550 AT4G29530.2 54.938 162 69 1 8 165 36 197 1.00e-63 196

Find 55 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCAAATGTGATCCTTTA+AGG 0.035104 7_2:+15615424 Msa1050550:three_prime_UTR
GATATTATTCTGTGATTAAT+TGG 0.161270 7_2:-15614802 None:intergenic
TGCTCTCAAAATTGGTTCTT+TGG 0.208038 7_2:-15614347 None:intergenic
TATGCCTTTCAATTCTCTTA+TGG 0.235071 7_2:+15614586 Msa1050550:exon
TCTCTCAGTGCTCTCAAAAT+TGG 0.235886 7_2:-15614355 None:intergenic
TTGATTGTGATAGTGATAAT+TGG 0.238396 7_2:+15614520 Msa1050550:five_prime_UTR
ATTTCCATGGCGTTCCTTAA+AGG 0.239410 7_2:-15615438 None:intergenic
ATTAAATCAGCTTATGCATT+AGG 0.247679 7_2:+15614829 Msa1050550:CDS
CGCCATGGAAATTCTTTATA+GGG 0.264710 7_2:+15615449 Msa1050550:three_prime_UTR
ACGCCATGGAAATTCTTTAT+AGG 0.279084 7_2:+15615448 Msa1050550:three_prime_UTR
TAGTGATAATTGGGTGAATT+AGG 0.294368 7_2:+15614530 Msa1050550:five_prime_UTR
ATTATACCTTGCACATGTTT+GGG 0.294621 7_2:-15615038 None:intergenic
GATTATACCTTGCACATGTT+TGG 0.298306 7_2:-15615039 None:intergenic
ATCTACCTTGGTGATGGTGC+TGG 0.308894 7_2:+15615196 Msa1050550:CDS
TTAAATCAGCTTATGCATTA+GGG 0.371086 7_2:+15614830 Msa1050550:CDS
CACAAGAAATAGAAGACAAA+TGG 0.381654 7_2:-15614381 None:intergenic
ATGATGGAGCTTCATTCAAA+TGG 0.391230 7_2:+15614739 Msa1050550:CDS
AAGTAAGGACTAAACTTATA+AGG 0.414897 7_2:-15615505 None:intergenic
TCTACCTTGGTGATGGTGCT+GGG 0.415344 7_2:+15615197 Msa1050550:CDS
CCTTCTTGATTAACATAACC+AGG 0.424126 7_2:-15614952 None:intergenic
ATGCATTAGGGTGTGATTTG+AGG 0.437272 7_2:+15614842 Msa1050550:CDS
CACACTGGAAAATTCTTCCT+TGG 0.458582 7_2:-15615265 None:intergenic
TGATTGTGATAGTGATAATT+GGG 0.461891 7_2:+15614521 Msa1050550:five_prime_UTR
TCTGAGATTAACACTAATCC+TGG 0.477118 7_2:+15614934 Msa1050550:CDS
AACAAGAGGTTTATCTACCT+TGG 0.481752 7_2:+15615184 Msa1050550:CDS
AATGCTATTGAAATTAAGTA+AGG 0.481831 7_2:-15615520 None:intergenic
ACAAGAAATAGAAGACAAAT+GGG 0.488463 7_2:-15614380 None:intergenic
AACCTCTTCAATCTCTTCGA+TGG 0.499828 7_2:-15614767 None:intergenic
CCTGGTTATGTTAATCAAGA+AGG 0.499879 7_2:+15614952 Msa1050550:CDS
CCTTCTCTAAGTCTCAAGCT+AGG 0.506175 7_2:-15615229 None:intergenic
TGATGGAGCTTCATTCAAAT+GGG 0.508401 7_2:+15614740 Msa1050550:CDS
GCTTTGTTGAAGTCATGATA+AGG 0.514128 7_2:-15614991 None:intergenic
AACCCTATAAAGAATTTCCA+TGG 0.519898 7_2:-15615451 None:intergenic
GACTTCAACAAAGCTTCTCA+TGG 0.521531 7_2:+15615000 Msa1050550:CDS
TTTACAGGACAGAATGATGA+TGG 0.525460 7_2:+15614723 Msa1050550:intron
AAGAGAATTGAAAGGCATAG+TGG 0.528235 7_2:-15614582 None:intergenic
AGGTTTATCTACCTTGGTGA+TGG 0.549393 7_2:+15615190 Msa1050550:CDS
AAGGAGTTGATTGAACAAAT+CGG 0.557882 7_2:-15614558 None:intergenic
AGAGAATTGAAAGGCATAGT+GGG 0.565487 7_2:-15614581 None:intergenic
CTACCTTGGTGATGGTGCTG+GGG 0.569867 7_2:+15615198 Msa1050550:CDS
AGATTGAAGAGGTTCTTCAA+AGG 0.570752 7_2:+15614776 Msa1050550:CDS
AATTGAAAGGCATAGTGGGA+AGG 0.577724 7_2:-15614577 None:intergenic
CTTCTCTAAGTCTCAAGCTA+GGG 0.579387 7_2:-15615228 None:intergenic
TTATACCTTGCACATGTTTG+GGG 0.581671 7_2:-15615037 None:intergenic
AAGGTGACTTTGTGATGCCA+AGG 0.594145 7_2:+15615248 Msa1050550:CDS
TATACCTTGCACATGTTTGG+GGG 0.606803 7_2:-15615036 None:intergenic
TGATCCTTTAAGGAACGCCA+TGG 0.615430 7_2:+15615434 Msa1050550:three_prime_UTR
AACCATCGAAGAGATTGAAG+AGG 0.624606 7_2:+15614765 Msa1050550:CDS
CATACCATAAGAGAATTGAA+AGG 0.628950 7_2:-15614590 None:intergenic
TTTGAGTGGTGAGAAAGTGA+AGG 0.640246 7_2:-15614441 None:intergenic
TTGCATATCAAATCCCACAC+TGG 0.647687 7_2:-15615280 None:intergenic
GATTGTTAGTGATGCTAATG+CGG 0.651747 7_2:+15614864 Msa1050550:CDS
CCTAGCTTGAGACTTAGAGA+AGG 0.660953 7_2:+15615229 Msa1050550:CDS
AGTGTGGGATTTGATATGCA+AGG 0.670478 7_2:+15615282 Msa1050550:CDS
AGTCCCCAGCACCATCACCA+AGG 0.694728 7_2:-15615201 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGTAATTTTTTTTTGTA+GGG - chr7_2:15615552-15615571 None:intergenic 10.0%
!!! TATAAGTAATTTTTTTTTGT+AGG - chr7_2:15615553-15615572 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG - chr7_2:15615613-15615632 None:intergenic 10.0%
!!! ATAAGTAATTTTTTTTTGTA+GGG - chr7_2:15615552-15615571 None:intergenic 10.0%
!!! TATAAGTAATTTTTTTTTGT+AGG - chr7_2:15615553-15615572 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG - chr7_2:15615613-15615632 None:intergenic 10.0%
!!! AAACAAAATTTATTTTAGCA+GGG - chr7_2:15615584-15615603 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG - chr7_2:15615585-15615604 None:intergenic 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG - chr7_2:15615584-15615603 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG - chr7_2:15615585-15615604 None:intergenic 15.0%
!!! ACATTTTTTTTTTCTTTGAG+TGG - chr7_2:15614458-15614477 None:intergenic 20.0%
!!! ATTAACTTGTGTTTTGATTT+TGG + chr7_2:15614698-15614717 Msa1050550:intron 20.0%
!! GATATTATTCTGTGATTAAT+TGG - chr7_2:15614805-15614824 None:intergenic 20.0%
!!! GTATTGAATATCAATTTTTG+AGG + chr7_2:15615349-15615368 Msa1050550:three_prime_UTR 20.0%
!!! TATAGGGTTAATTATGTTTT+TGG + chr7_2:15615465-15615484 Msa1050550:three_prime_UTR 20.0%
!! AATGCTATTGAAATTAAGTA+AGG - chr7_2:15615523-15615542 None:intergenic 20.0%
!!! ACATTTTTTTTTTCTTTGAG+TGG - chr7_2:15614458-15614477 None:intergenic 20.0%
!!! ATTAACTTGTGTTTTGATTT+TGG + chr7_2:15614698-15614717 Msa1050550:intron 20.0%
!! GATATTATTCTGTGATTAAT+TGG - chr7_2:15614805-15614824 None:intergenic 20.0%
!!! GTATTGAATATCAATTTTTG+AGG + chr7_2:15615349-15615368 Msa1050550:three_prime_UTR 20.0%
!!! TATAGGGTTAATTATGTTTT+TGG + chr7_2:15615465-15615484 Msa1050550:three_prime_UTR 20.0%
!! AATGCTATTGAAATTAAGTA+AGG - chr7_2:15615523-15615542 None:intergenic 20.0%
! ACAAGAAATAGAAGACAAAT+GGG - chr7_2:15614383-15614402 None:intergenic 25.0%
!! TTGATTGTGATAGTGATAAT+TGG + chr7_2:15614520-15614539 Msa1050550:five_prime_UTR 25.0%
!! TGATTGTGATAGTGATAATT+GGG + chr7_2:15614521-15614540 Msa1050550:five_prime_UTR 25.0%
!!! GTTTTGATTTTGGAATTTAC+AGG + chr7_2:15614708-15614727 Msa1050550:intron 25.0%
! ATTAAATCAGCTTATGCATT+AGG + chr7_2:15614829-15614848 Msa1050550:CDS 25.0%
! TTAAATCAGCTTATGCATTA+GGG + chr7_2:15614830-15614849 Msa1050550:CDS 25.0%
!!! AACACAATTTTGAAGCATTT+GGG + chr7_2:15614895-15614914 Msa1050550:CDS 25.0%
!!! TCTTGTTCGAAATTGATTTT+TGG - chr7_2:15615171-15615190 None:intergenic 25.0%
! AAAAATCAATTTCGAACAAG+AGG + chr7_2:15615170-15615189 Msa1050550:CDS 25.0%
! AAGTAAGGACTAAACTTATA+AGG - chr7_2:15615508-15615527 None:intergenic 25.0%
! ACAAGAAATAGAAGACAAAT+GGG - chr7_2:15614383-15614402 None:intergenic 25.0%
!! TTGATTGTGATAGTGATAAT+TGG + chr7_2:15614520-15614539 Msa1050550:five_prime_UTR 25.0%
!! TGATTGTGATAGTGATAATT+GGG + chr7_2:15614521-15614540 Msa1050550:five_prime_UTR 25.0%
!!! GTTTTGATTTTGGAATTTAC+AGG + chr7_2:15614708-15614727 Msa1050550:intron 25.0%
! ATTAAATCAGCTTATGCATT+AGG + chr7_2:15614829-15614848 Msa1050550:CDS 25.0%
! TTAAATCAGCTTATGCATTA+GGG + chr7_2:15614830-15614849 Msa1050550:CDS 25.0%
!!! AACACAATTTTGAAGCATTT+GGG + chr7_2:15614895-15614914 Msa1050550:CDS 25.0%
!!! TCTTGTTCGAAATTGATTTT+TGG - chr7_2:15615171-15615190 None:intergenic 25.0%
! AAAAATCAATTTCGAACAAG+AGG + chr7_2:15615170-15615189 Msa1050550:CDS 25.0%
! AAGTAAGGACTAAACTTATA+AGG - chr7_2:15615508-15615527 None:intergenic 25.0%
CACAAGAAATAGAAGACAAA+TGG - chr7_2:15614384-15614403 None:intergenic 30.0%
!!! TGAACGTGTTTTTTCATTCT+GGG + chr7_2:15614402-15614421 Msa1050550:five_prime_UTR 30.0%
TAGTGATAATTGGGTGAATT+AGG + chr7_2:15614530-15614549 Msa1050550:five_prime_UTR 30.0%
! AAGGAGTTGATTGAACAAAT+CGG - chr7_2:15614561-15614580 None:intergenic 30.0%
TATGCCTTTCAATTCTCTTA+TGG + chr7_2:15614586-15614605 Msa1050550:exon 30.0%
CATACCATAAGAGAATTGAA+AGG - chr7_2:15614593-15614612 None:intergenic 30.0%
!!! CAACACAATTTTGAAGCATT+TGG + chr7_2:15614894-15614913 Msa1050550:CDS 30.0%
ATTATACCTTGCACATGTTT+GGG - chr7_2:15615041-15615060 None:intergenic 30.0%
TTGTCAAATGTGATCCTTTA+AGG + chr7_2:15615424-15615443 Msa1050550:three_prime_UTR 30.0%
AACCCTATAAAGAATTTCCA+TGG - chr7_2:15615454-15615473 None:intergenic 30.0%
! TATAAGGTCGCAATTTTGTA+TGG - chr7_2:15615492-15615511 None:intergenic 30.0%
CACAAGAAATAGAAGACAAA+TGG - chr7_2:15614384-15614403 None:intergenic 30.0%
!!! TGAACGTGTTTTTTCATTCT+GGG + chr7_2:15614402-15614421 Msa1050550:five_prime_UTR 30.0%
TAGTGATAATTGGGTGAATT+AGG + chr7_2:15614530-15614549 Msa1050550:five_prime_UTR 30.0%
! AAGGAGTTGATTGAACAAAT+CGG - chr7_2:15614561-15614580 None:intergenic 30.0%
TATGCCTTTCAATTCTCTTA+TGG + chr7_2:15614586-15614605 Msa1050550:exon 30.0%
CATACCATAAGAGAATTGAA+AGG - chr7_2:15614593-15614612 None:intergenic 30.0%
!!! CAACACAATTTTGAAGCATT+TGG + chr7_2:15614894-15614913 Msa1050550:CDS 30.0%
ATTATACCTTGCACATGTTT+GGG - chr7_2:15615041-15615060 None:intergenic 30.0%
TTGTCAAATGTGATCCTTTA+AGG + chr7_2:15615424-15615443 Msa1050550:three_prime_UTR 30.0%
AACCCTATAAAGAATTTCCA+TGG - chr7_2:15615454-15615473 None:intergenic 30.0%
! TATAAGGTCGCAATTTTGTA+TGG - chr7_2:15615492-15615511 None:intergenic 30.0%
! TGCTCTCAAAATTGGTTCTT+TGG - chr7_2:15614350-15614369 None:intergenic 35.0%
!!! GTGAACGTGTTTTTTCATTC+TGG + chr7_2:15614401-15614420 Msa1050550:five_prime_UTR 35.0%
! AGAGAATTGAAAGGCATAGT+GGG - chr7_2:15614584-15614603 None:intergenic 35.0%
! AAGAGAATTGAAAGGCATAG+TGG - chr7_2:15614585-15614604 None:intergenic 35.0%
TTTACAGGACAGAATGATGA+TGG + chr7_2:15614723-15614742 Msa1050550:intron 35.0%
! ATGATGGAGCTTCATTCAAA+TGG + chr7_2:15614739-15614758 Msa1050550:CDS 35.0%
TGATGGAGCTTCATTCAAAT+GGG + chr7_2:15614740-15614759 Msa1050550:CDS 35.0%
AGATTGAAGAGGTTCTTCAA+AGG + chr7_2:15614776-15614795 Msa1050550:CDS 35.0%
GATTGTTAGTGATGCTAATG+CGG + chr7_2:15614864-15614883 Msa1050550:CDS 35.0%
! TCTGAGATTAACACTAATCC+TGG + chr7_2:15614934-15614953 Msa1050550:CDS 35.0%
CCTTCTTGATTAACATAACC+AGG - chr7_2:15614955-15614974 None:intergenic 35.0%
CCTGGTTATGTTAATCAAGA+AGG + chr7_2:15614952-15614971 Msa1050550:CDS 35.0%
! GCTTTGTTGAAGTCATGATA+AGG - chr7_2:15614994-15615013 None:intergenic 35.0%
TTATACCTTGCACATGTTTG+GGG - chr7_2:15615040-15615059 None:intergenic 35.0%
GATTATACCTTGCACATGTT+TGG - chr7_2:15615042-15615061 None:intergenic 35.0%
AACAAGAGGTTTATCTACCT+TGG + chr7_2:15615184-15615203 Msa1050550:CDS 35.0%
! AAGGAAGAATTTTCCAGTGT+GGG + chr7_2:15615267-15615286 Msa1050550:CDS 35.0%
ACGCCATGGAAATTCTTTAT+AGG + chr7_2:15615448-15615467 Msa1050550:three_prime_UTR 35.0%
CGCCATGGAAATTCTTTATA+GGG + chr7_2:15615449-15615468 Msa1050550:three_prime_UTR 35.0%
! TGCTCTCAAAATTGGTTCTT+TGG - chr7_2:15614350-15614369 None:intergenic 35.0%
!!! GTGAACGTGTTTTTTCATTC+TGG + chr7_2:15614401-15614420 Msa1050550:five_prime_UTR 35.0%
! AGAGAATTGAAAGGCATAGT+GGG - chr7_2:15614584-15614603 None:intergenic 35.0%
! AAGAGAATTGAAAGGCATAG+TGG - chr7_2:15614585-15614604 None:intergenic 35.0%
TTTACAGGACAGAATGATGA+TGG + chr7_2:15614723-15614742 Msa1050550:intron 35.0%
! ATGATGGAGCTTCATTCAAA+TGG + chr7_2:15614739-15614758 Msa1050550:CDS 35.0%
TGATGGAGCTTCATTCAAAT+GGG + chr7_2:15614740-15614759 Msa1050550:CDS 35.0%
AGATTGAAGAGGTTCTTCAA+AGG + chr7_2:15614776-15614795 Msa1050550:CDS 35.0%
GATTGTTAGTGATGCTAATG+CGG + chr7_2:15614864-15614883 Msa1050550:CDS 35.0%
! TCTGAGATTAACACTAATCC+TGG + chr7_2:15614934-15614953 Msa1050550:CDS 35.0%
CCTTCTTGATTAACATAACC+AGG - chr7_2:15614955-15614974 None:intergenic 35.0%
CCTGGTTATGTTAATCAAGA+AGG + chr7_2:15614952-15614971 Msa1050550:CDS 35.0%
! GCTTTGTTGAAGTCATGATA+AGG - chr7_2:15614994-15615013 None:intergenic 35.0%
TTATACCTTGCACATGTTTG+GGG - chr7_2:15615040-15615059 None:intergenic 35.0%
GATTATACCTTGCACATGTT+TGG - chr7_2:15615042-15615061 None:intergenic 35.0%
AACAAGAGGTTTATCTACCT+TGG + chr7_2:15615184-15615203 Msa1050550:CDS 35.0%
! AAGGAAGAATTTTCCAGTGT+GGG + chr7_2:15615267-15615286 Msa1050550:CDS 35.0%
ACGCCATGGAAATTCTTTAT+AGG + chr7_2:15615448-15615467 Msa1050550:three_prime_UTR 35.0%
CGCCATGGAAATTCTTTATA+GGG + chr7_2:15615449-15615468 Msa1050550:three_prime_UTR 35.0%
TCTCTCAGTGCTCTCAAAAT+TGG - chr7_2:15614358-15614377 None:intergenic 40.0%
TTTGAGTGGTGAGAAAGTGA+AGG - chr7_2:15614444-15614463 None:intergenic 40.0%
! AATTGAAAGGCATAGTGGGA+AGG - chr7_2:15614580-15614599 None:intergenic 40.0%
AACCATCGAAGAGATTGAAG+AGG + chr7_2:15614765-15614784 Msa1050550:CDS 40.0%
AACCTCTTCAATCTCTTCGA+TGG - chr7_2:15614770-15614789 None:intergenic 40.0%
ATGCATTAGGGTGTGATTTG+AGG + chr7_2:15614842-15614861 Msa1050550:CDS 40.0%
GACTTCAACAAAGCTTCTCA+TGG + chr7_2:15615000-15615019 Msa1050550:CDS 40.0%
TATACCTTGCACATGTTTGG+GGG - chr7_2:15615039-15615058 None:intergenic 40.0%
AGGTTTATCTACCTTGGTGA+TGG + chr7_2:15615190-15615209 Msa1050550:CDS 40.0%
CTTCTCTAAGTCTCAAGCTA+GGG - chr7_2:15615231-15615250 None:intergenic 40.0%
CACACTGGAAAATTCTTCCT+TGG - chr7_2:15615268-15615287 None:intergenic 40.0%
! CAAGGAAGAATTTTCCAGTG+TGG + chr7_2:15615266-15615285 Msa1050550:CDS 40.0%
TTGCATATCAAATCCCACAC+TGG - chr7_2:15615283-15615302 None:intergenic 40.0%
AGTGTGGGATTTGATATGCA+AGG + chr7_2:15615282-15615301 Msa1050550:CDS 40.0%
ATTTCCATGGCGTTCCTTAA+AGG - chr7_2:15615441-15615460 None:intergenic 40.0%
TCTCTCAGTGCTCTCAAAAT+TGG - chr7_2:15614358-15614377 None:intergenic 40.0%
TTTGAGTGGTGAGAAAGTGA+AGG - chr7_2:15614444-15614463 None:intergenic 40.0%
! AATTGAAAGGCATAGTGGGA+AGG - chr7_2:15614580-15614599 None:intergenic 40.0%
AACCATCGAAGAGATTGAAG+AGG + chr7_2:15614765-15614784 Msa1050550:CDS 40.0%
AACCTCTTCAATCTCTTCGA+TGG - chr7_2:15614770-15614789 None:intergenic 40.0%
ATGCATTAGGGTGTGATTTG+AGG + chr7_2:15614842-15614861 Msa1050550:CDS 40.0%
GACTTCAACAAAGCTTCTCA+TGG + chr7_2:15615000-15615019 Msa1050550:CDS 40.0%
TATACCTTGCACATGTTTGG+GGG - chr7_2:15615039-15615058 None:intergenic 40.0%
AGGTTTATCTACCTTGGTGA+TGG + chr7_2:15615190-15615209 Msa1050550:CDS 40.0%
CTTCTCTAAGTCTCAAGCTA+GGG - chr7_2:15615231-15615250 None:intergenic 40.0%
CACACTGGAAAATTCTTCCT+TGG - chr7_2:15615268-15615287 None:intergenic 40.0%
! CAAGGAAGAATTTTCCAGTG+TGG + chr7_2:15615266-15615285 Msa1050550:CDS 40.0%
TTGCATATCAAATCCCACAC+TGG - chr7_2:15615283-15615302 None:intergenic 40.0%
AGTGTGGGATTTGATATGCA+AGG + chr7_2:15615282-15615301 Msa1050550:CDS 40.0%
ATTTCCATGGCGTTCCTTAA+AGG - chr7_2:15615441-15615460 None:intergenic 40.0%
CCTTCTCTAAGTCTCAAGCT+AGG - chr7_2:15615232-15615251 None:intergenic 45.0%
CCTAGCTTGAGACTTAGAGA+AGG + chr7_2:15615229-15615248 Msa1050550:CDS 45.0%
AAGGTGACTTTGTGATGCCA+AGG + chr7_2:15615248-15615267 Msa1050550:CDS 45.0%
! TGATCCTTTAAGGAACGCCA+TGG + chr7_2:15615434-15615453 Msa1050550:three_prime_UTR 45.0%
CCTTCTCTAAGTCTCAAGCT+AGG - chr7_2:15615232-15615251 None:intergenic 45.0%
CCTAGCTTGAGACTTAGAGA+AGG + chr7_2:15615229-15615248 Msa1050550:CDS 45.0%
AAGGTGACTTTGTGATGCCA+AGG + chr7_2:15615248-15615267 Msa1050550:CDS 45.0%
! TGATCCTTTAAGGAACGCCA+TGG + chr7_2:15615434-15615453 Msa1050550:three_prime_UTR 45.0%
!! TAAATTATTATTATTATTTC+AGG + chr7_2:15615126-15615145 Msa1050550:intron 5.0%
!! AAATTATTATTATTATTTCA+GGG + chr7_2:15615127-15615146 Msa1050550:intron 5.0%
!! TAAATTATTATTATTATTTC+AGG + chr7_2:15615126-15615145 Msa1050550:intron 5.0%
!! AAATTATTATTATTATTTCA+GGG + chr7_2:15615127-15615146 Msa1050550:intron 5.0%
TTGTCCCCCAAACATGTGCA+AGG + chr7_2:15615032-15615051 Msa1050550:CDS 50.0%
!! ATCTACCTTGGTGATGGTGC+TGG + chr7_2:15615196-15615215 Msa1050550:CDS 50.0%
!! TCTACCTTGGTGATGGTGCT+GGG + chr7_2:15615197-15615216 Msa1050550:CDS 50.0%
TTGTCCCCCAAACATGTGCA+AGG + chr7_2:15615032-15615051 Msa1050550:CDS 50.0%
!! ATCTACCTTGGTGATGGTGC+TGG + chr7_2:15615196-15615215 Msa1050550:CDS 50.0%
!! TCTACCTTGGTGATGGTGCT+GGG + chr7_2:15615197-15615216 Msa1050550:CDS 50.0%
!! CTACCTTGGTGATGGTGCTG+GGG + chr7_2:15615198-15615217 Msa1050550:CDS 55.0%
!! CTACCTTGGTGATGGTGCTG+GGG + chr7_2:15615198-15615217 Msa1050550:CDS 55.0%
AGTCCCCAGCACCATCACCA+AGG - chr7_2:15615204-15615223 None:intergenic 60.0%
AGTCCCCAGCACCATCACCA+AGG - chr7_2:15615204-15615223 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 15614344 15615646 15614344 ID=Msa1050550;Name=Msa1050550
chr7_2 mRNA 15614344 15615646 15614344 ID=Msa1050550-mRNA-1;Parent=Msa1050550;Name=Msa1050550-mRNA-1;_AED=0.04;_eAED=0.04;_QI=243|1|1|1|1|1|3|331|170
chr7_2 exon 15614344 15614607 15614344 ID=Msa1050550-mRNA-1:exon:3660;Parent=Msa1050550-mRNA-1
chr7_2 exon 15614730 15615053 15614730 ID=Msa1050550-mRNA-1:exon:3661;Parent=Msa1050550-mRNA-1
chr7_2 exon 15615148 15615646 15615148 ID=Msa1050550-mRNA-1:exon:3662;Parent=Msa1050550-mRNA-1
chr7_2 five_prime_UTR 15614344 15614586 15614344 ID=Msa1050550-mRNA-1:five_prime_utr;Parent=Msa1050550-mRNA-1
chr7_2 CDS 15614587 15614607 15614587 ID=Msa1050550-mRNA-1:cds;Parent=Msa1050550-mRNA-1
chr7_2 CDS 15614730 15615053 15614730 ID=Msa1050550-mRNA-1:cds;Parent=Msa1050550-mRNA-1
chr7_2 CDS 15615148 15615315 15615148 ID=Msa1050550-mRNA-1:cds;Parent=Msa1050550-mRNA-1
chr7_2 three_prime_UTR 15615316 15615646 15615316 ID=Msa1050550-mRNA-1:three_prime_utr;Parent=Msa1050550-mRNA-1
Gene Sequence

>Msa1050550

ATGCCTTTCAATTCTCTTATGGACAGAATGATGATGGAGCTTCATTCAAATGGGAAAACCATCGAAGAGATTGAAGAGGTTCTTCAAAGGATTCCAATTAATCACAGAATAATATCTGCTATTAAATCAGCTTATGCATTAGGGTGTGATTTGAGGATTGTTAGTGATGCTAATGCGGTTTTCATCAACACAATTTTGAAGCATTTGGGAATAAGTGAATGCTTTTCTGAGATTAACACTAATCCTGGTTATGTTAATCAAGAAGGAAGATTAAAAGTTATGCCTTATCATGACTTCAACAAAGCTTCTCATGGTTGCACTCTTTGTCCCCCAAACATGTGCAAGGGTTTAATCATTGATAGAATCCAAAAATCAATTTCGAACAAGAGGTTTATCTACCTTGGTGATGGTGCTGGGGACTATTGCCCTAGCTTGAGACTTAGAGAAGGTGACTTTGTGATGCCAAGGAAGAATTTTCCAGTGTGGGATTTGATATGCAAGGAAAAATTCTAA
Protein sequence

>Msa1050550

MPFNSLMDRMMMELHSNGKTIEEIEEVLQRIPINHRIISAIKSAYALGCDLRIVSDANAVFINTILKHLGISECFSEINTNPGYVNQEGRLKVMPYHDFNKASHGCTLCPPNMCKGLIIDRIQKSISNKRFIYLGDGAGDYCPSLRLREGDFVMPRKNFPVWDLICKEKF*