AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1053640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1053640 MtrunA17_Chr8g0350731 82.803 628 108 0 1 628 29 656 0.0 1071
Msa1053640 MtrunA17_Chr7g0223711 81.583 619 113 1 1 618 1 619 0.0 1051
Msa1053640 MtrunA17_Chr7g0223751 78.754 626 133 0 1 626 1 626 0.0 1025
Msa1053640 MtrunA17_Chr7g0223631 81.877 618 98 2 1 618 1 604 0.0 1020
Msa1053640 MtrunA17_Chr7g0223701 77.445 634 134 3 1 625 1 634 0.0 1000
Msa1053640 MtrunA17_Chr7g0223621 77.124 612 140 0 1 612 1 612 0.0 981
Msa1053640 MtrunA17_Chr7g0223731 75.447 615 151 0 1 615 1 615 0.0 967
Msa1053640 MtrunA17_Chr7g0223031 74.837 612 154 0 1 612 1 612 0.0 961
Msa1053640 MtrunA17_Chr7g0248131 74.840 624 152 4 1 619 1 624 0.0 939
Msa1053640 MtrunA17_Chr7g0248151 74.235 621 157 2 1 618 1 621 0.0 924
Msa1053640 MtrunA17_Chr7g0223741 73.569 594 156 1 1 593 1 594 0.0 923
Msa1053640 MtrunA17_Chr7g0223541 75.000 556 138 1 74 628 31 586 0.0 865
Msa1053640 MtrunA17_Chr7g0223681 80.303 528 104 0 91 618 2 529 0.0 864
Msa1053640 MtrunA17_Chr7g0223781 68.750 608 187 2 1 607 1 606 0.0 859
Msa1053640 MtrunA17_Chr2g0293581 67.258 620 199 4 1 616 1 620 0.0 847
Msa1053640 MtrunA17_Chr7g0223801 65.635 614 210 1 1 614 1 613 0.0 840
Msa1053640 MtrunA17_Chr7g0221661 65.905 613 208 1 1 612 1 613 0.0 831
Msa1053640 MtrunA17_Chr7g0223181 65.858 618 206 4 1 615 1 616 0.0 827
Msa1053640 MtrunA17_Chr5g0427901 64.331 628 208 3 1 614 1 626 0.0 827
Msa1053640 MtrunA17_Chr4g0031321 66.230 610 201 4 1 607 1 608 0.0 826
Msa1053640 MtrunA17_Chr2g0298851 65.316 617 210 4 1 614 1 616 0.0 825
Msa1053640 MtrunA17_Chr4g0031301 66.066 610 202 4 1 607 1 608 0.0 824
Msa1053640 MtrunA17_Chr7g0262821 65.056 621 212 4 1 618 1 619 0.0 820
Msa1053640 MtrunA17_Chr7g0223291 64.480 625 217 4 1 622 1 623 0.0 819
Msa1053640 MtrunA17_Chr7g0223721 64.448 616 217 2 1 614 1 616 0.0 812
Msa1053640 MtrunA17_Chr7g0233311 63.695 617 221 2 1 614 1 617 0.0 811
Msa1053640 MtrunA17_Chr7g0223851 63.916 618 221 2 1 616 10 627 0.0 810
Msa1053640 MtrunA17_Chr4g0073741 64.090 621 217 5 1 618 1 618 0.0 807
Msa1053640 MtrunA17_Chr2g0298861 63.607 621 212 4 1 607 1 621 0.0 806
Msa1053640 MtrunA17_Chr4g0040931 63.547 609 220 2 1 607 1 609 0.0 796
Msa1053640 MtrunA17_Chr7g0225671 64.019 617 217 4 2 616 11 624 0.0 796
Msa1053640 MtrunA17_Chr2g0287631 65.154 617 212 3 1 614 1 617 0.0 790
Msa1053640 MtrunA17_Chr7g0223821 62.969 613 220 3 1 607 1 612 0.0 771
Msa1053640 MtrunA17_Chr7g0217971 62.312 597 201 1 1 597 1 573 0.0 770
Msa1053640 MtrunA17_Chr2g0296391 69.508 528 159 2 1 526 1 528 0.0 761
Msa1053640 MtrunA17_Chr4g0012541 60.841 618 231 3 1 616 1 609 0.0 748
Msa1053640 MtrunA17_Chr7g0233301 59.319 617 217 3 1 614 1 586 0.0 743
Msa1053640 MtrunA17_Chr7g0223831 59.141 629 223 6 1 626 1 598 0.0 729
Msa1053640 MtrunA17_Chr7g0215261 59.054 613 212 5 1 609 1 578 0.0 725
Msa1053640 MtrunA17_Chr8g0390821 56.353 669 223 8 1 615 1 654 0.0 716
Msa1053640 MtrunA17_Chr7g0228281 57.767 618 214 5 1 616 62 634 0.0 704
Msa1053640 MtrunA17_Chr6g0462601 57.302 630 256 5 1 619 1 628 0.0 696
Msa1053640 MtrunA17_Chr2g0293601 65.637 518 142 3 1 516 1 484 0.0 693
Msa1053640 MtrunA17_Chr6g0462681 59.380 581 232 3 1 579 1 579 0.0 688
Msa1053640 MtrunA17_Chr6g0462711 56.369 628 258 6 8 623 9 632 0.0 676
Msa1053640 MtrunA17_Chr2g0331381 62.082 538 143 3 9 546 6 482 0.0 675
Msa1053640 MtrunA17_Chr6g0462641 57.993 588 232 5 1 578 1 583 0.0 670
Msa1053640 MtrunA17_Chr6g0462771 57.659 581 231 5 8 578 8 583 0.0 653
Msa1053640 MtrunA17_Chr2g0284681 58.214 560 223 6 9 559 8 565 0.0 647
Msa1053640 MtrunA17_Chr8g0388761 52.971 589 266 8 7 590 36 618 0.0 612
Msa1053640 MtrunA17_Chr8g0388671 53.141 589 265 8 7 590 36 618 0.0 611
Msa1053640 MtrunA17_Chr2g0293561 74.064 374 97 0 1 374 1 374 0.0 606
Msa1053640 MtrunA17_Chr1g0166551 52.138 608 178 4 9 614 5 501 0.0 597
Msa1053640 MtrunA17_Chr6g0462611 54.862 545 243 3 74 616 22 565 0.0 580
Msa1053640 MtrunA17_Chr2g0299921 71.318 387 107 2 2 388 1022 1404 0.0 575
Msa1053640 MtrunA17_Chr2g0299921 68.718 390 117 3 2 390 1406 1791 9.35e-171 531
Msa1053640 MtrunA17_Chr2g0299791 69.072 388 116 2 1 388 1034 1417 0.0 555
Msa1053640 MtrunA17_Chr2g0299851 67.526 388 122 2 1 388 1030 1413 0.0 552
Msa1053640 MtrunA17_Chr2g0299821 66.329 395 129 2 1 393 1 393 0.0 543
Msa1053640 MtrunA17_Chr2g0299821 45.161 93 40 4 451 534 390 480 1.85e-12 70.1
Msa1053640 MtrunA17_Chr2g0293271 58.756 434 109 3 21 454 43 406 1.38e-173 499
Msa1053640 MtrunA17_Chr2g0299881 65.174 402 128 6 2 395 1031 1428 1.29e-171 527
Msa1053640 MtrunA17_Chr2g0299881 58.209 67 28 0 184 250 1409 1475 1.47e-17 87.4
Msa1053640 MtrunA17_Chr6g0462861 46.780 590 282 10 1 579 1 569 1.04e-164 486
Msa1053640 MtrunA17_Chr2g0279901 46.237 558 276 11 10 560 57 597 5.79e-154 459
Msa1053640 MtrunA17_Chr1g0151991 71.478 291 83 0 1 291 1 291 1.33e-152 441
Msa1053640 MtrunA17_Chr7g0245521 73.993 273 71 0 1 273 1 273 4.43e-152 439
Msa1053640 MtrunA17_Chr4g0049501 44.982 558 284 10 10 560 54 595 1.80e-151 452
Msa1053640 MtrunA17_Chr2g0277021 43.390 590 310 12 10 592 72 644 2.02e-144 436
Msa1053640 MtrunA17_Chr7g0245531 58.147 313 130 1 305 616 2 314 4.35e-120 359
Msa1053640 MtrunA17_Chr7g0223761 50.404 371 141 3 241 609 3 332 5.44e-117 352
Msa1053640 MtrunA17_Chr7g0223671 84.865 185 28 0 74 258 8 192 1.03e-113 338
Msa1053640 MtrunA17_Chr1g0152001 55.405 296 130 2 315 609 1 295 1.05e-107 327
Msa1053640 MtrunA17_Chr1g0188601 75.916 191 46 0 92 282 1 191 7.82e-104 313
Msa1053640 MtrunA17_Chr6g0462631 49.394 330 118 5 91 416 13 297 1.33e-98 303
Msa1053640 MtrunA17_Chr6g0462751 46.286 350 128 4 67 413 12 304 4.06e-94 292
Msa1053640 MtrunA17_Chr1g0188611 51.525 295 134 3 322 614 1 288 1.23e-80 256
Msa1053640 MtrunA17_Chr5g0394391 33.730 504 306 13 8 493 28 521 8.31e-80 263
Msa1053640 MtrunA17_Chr7g0223771 74.510 153 39 0 93 245 1 153 1.29e-78 246
Msa1053640 MtrunA17_Chr6g0462791 66.292 178 59 1 109 286 2 178 2.46e-77 243
Msa1053640 MtrunA17_Chr2g0331901 33.937 442 275 6 10 438 4 441 9.24e-75 256
Msa1053640 MtrunA17_Chr4g0004331 34.722 432 265 5 10 428 4 431 9.52e-75 256
Msa1053640 MtrunA17_Chr4g0046881 75.862 145 32 1 131 275 10 151 1.02e-70 225
Msa1053640 MtrunA17_Chr5g0444001 33.879 428 273 6 10 431 4 427 1.94e-70 237
Msa1053640 MtrunA17_Chr3g0098761 31.624 468 297 7 10 475 4 450 8.16e-69 238
Msa1053640 MtrunA17_Chr7g0223861 73.282 131 35 0 78 208 4 134 1.12e-62 203
Msa1053640 MtrunA17_Chr4g0064621 33.078 523 315 14 8 504 139 652 1.32e-60 214
Msa1053640 MtrunA17_Chr3g0120101 27.941 544 343 13 10 510 27 564 1.75e-57 208
Msa1053640 MtrunA17_Chr6g0462701 54.444 180 58 1 91 270 13 168 2.68e-56 188
Msa1053640 MtrunA17_Chr4g0046871 80.583 103 20 0 333 435 3 105 6.34e-51 171
Msa1053640 MtrunA17_Chr4g0060241 29.320 515 316 17 8 498 19 509 8.13e-51 184
Msa1053640 MtrunA17_Chr5g0394221 41.825 263 147 5 291 550 61 320 8.30e-50 177
Msa1053640 MtrunA17_Chr6g0481391 63.934 122 41 1 38 159 13 131 9.97e-47 160
Msa1053640 MtrunA17_Chr5g0442171 33.934 333 192 10 170 487 1 320 2.55e-45 163
Msa1053640 MtrunA17_Chr7g0245541 43.500 200 112 1 417 615 1 200 2.90e-43 154
Msa1053640 MtrunA17_Chr7g0223691 89.041 73 8 0 1 73 1 73 1.36e-41 145
Msa1053640 MtrunA17_Chr5g0394231 36.638 232 94 5 74 304 5 184 2.04e-41 148
Msa1053640 MtrunA17_Chr6g0462691 50.704 142 69 1 322 462 1 142 6.93e-41 146
Msa1053640 MtrunA17_Chr1g0188591 76.712 73 17 0 1 73 1 73 8.84e-33 121
Msa1053640 MtrunA17_Chr6g0481381 72.973 74 20 0 176 249 1 74 8.51e-31 119
Msa1053640 MtrunA17_Chr6g0462621 76.712 73 15 1 1 73 1 71 1.60e-30 114
Msa1053640 MtrunA17_Chr7g0223791 69.512 82 17 3 56 137 18 91 1.04e-27 110
Msa1053640 MtrunA17_Chr7g0223791 35.484 93 60 0 480 572 89 181 1.89e-12 66.2
Msa1053640 MtrunA17_Chr7g0221651 51.190 84 41 0 215 298 1 84 1.39e-23 95.1
Msa1053640 MtrunA17_Chr7g0223881 53.012 83 38 1 281 363 2 83 4.84e-23 93.6
Msa1053640 MtrunA17_Chr7g0223661 44.828 116 21 1 315 430 1 73 7.39e-22 90.1
Msa1053640 MtrunA17_Chr7g0223871 39.062 128 77 1 490 616 7 134 6.06e-19 83.6
Msa1053640 MtrunA17_Chr2g0284661 49.383 81 40 1 368 447 61 141 8.68e-16 74.7
Msa1053640 MtrunA17_Chr2g0284661 52.459 61 27 1 225 283 5 65 4.36e-12 64.3
Msa1053640 MtrunA17_Chr6g0462801 53.030 66 26 1 322 382 1 66 2.12e-15 71.6
Msa1053640 MtrunA17_Chr2g0299891 67.442 43 14 0 315 357 1 43 3.68e-14 67.8
Msa1053640 MtrunA17_Chr4g0064651 39.362 94 55 2 397 488 29 122 6.56e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1053640 AT3G12580.1 65.397 630 213 4 1 627 1 628 0.0 836
Msa1053640 AT5G02500.1 64.401 618 215 4 1 615 1 616 0.0 816
Msa1053640 AT5G02490.1 64.239 618 216 4 1 615 1 616 0.0 811
Msa1053640 AT3G09440.1 64.563 618 214 4 1 615 1 616 0.0 806
Msa1053640 AT3G09440.4 64.563 618 214 4 1 615 1 616 0.0 806
Msa1053640 AT3G09440.2 64.563 618 214 4 1 615 1 616 0.0 806
Msa1053640 AT3G09440.3 64.563 618 214 4 1 615 1 616 0.0 806
Msa1053640 AT1G56410.1 63.285 621 221 5 1 618 1 617 0.0 793
Msa1053640 AT1G16030.1 62.963 621 224 5 1 618 1 618 0.0 792
Msa1053640 AT5G28540.1 53.630 606 270 8 7 607 35 634 0.0 632
Msa1053640 AT5G42020.1 53.630 606 270 8 7 607 35 634 0.0 630
Msa1053640 AT5G42020.3 53.630 606 270 8 7 607 40 639 0.0 630
Msa1053640 AT5G02500.2 75.000 388 95 1 1 388 1 386 0.0 620
Msa1053640 AT5G02500.2 37.624 101 63 0 515 615 386 486 1.42e-12 70.9
Msa1053640 AT1G09080.1 52.692 613 280 7 7 615 50 656 0.0 617
Msa1053640 AT1G09080.2 52.692 613 280 7 7 615 40 646 0.0 617
Msa1053640 AT5G42020.2 56.790 486 199 8 7 487 35 514 0.0 541
Msa1053640 AT5G09590.1 45.126 554 281 10 10 556 60 597 5.91e-149 447
Msa1053640 AT4G37910.1 44.982 558 284 10 10 560 55 596 2.15e-144 435
Msa1053640 AT4G37910.2 44.982 558 284 10 10 560 55 596 2.15e-144 435
Msa1053640 AT4G24280.1 42.741 613 326 13 10 614 81 676 8.04e-144 434
Msa1053640 AT5G49910.1 42.097 620 334 13 10 621 81 683 2.16e-143 434
Msa1053640 AT1G11660.4 29.900 602 360 11 10 558 4 596 3.79e-78 264
Msa1053640 AT1G11660.3 29.900 602 360 11 10 558 4 596 3.79e-78 264
Msa1053640 AT1G11660.1 29.900 602 360 11 10 558 4 596 3.79e-78 264
Msa1053640 AT1G79930.2 34.491 432 266 5 10 428 4 431 7.95e-77 261
Msa1053640 AT1G79920.1 34.793 434 262 6 10 428 4 431 8.36e-77 259
Msa1053640 AT1G79920.3 34.793 434 262 6 10 428 4 431 1.15e-76 259
Msa1053640 AT1G79920.2 34.793 434 262 6 10 428 4 431 1.15e-76 259
Msa1053640 AT1G79920.4 34.793 434 262 6 10 428 4 431 1.15e-76 259
Msa1053640 AT1G79930.1 34.491 432 266 5 10 428 4 431 2.33e-76 260
Msa1053640 AT1G11660.2 30.442 565 333 10 47 558 2 559 2.99e-72 247
Msa1053640 AT2G32120.1 32.427 515 313 14 8 506 29 524 3.85e-70 238
Msa1053640 AT2G32120.2 32.427 515 313 14 8 506 29 524 3.85e-70 238
Msa1053640 AT4G16660.1 27.672 524 336 12 6 493 23 539 1.30e-58 211
Msa1053640 AT4G16660.2 27.672 524 336 12 6 493 47 563 2.27e-58 211

Find 144 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTACTGTGAAGTAATTT+TGG 0.095272 7_2:-24304635 Msa1053640:five_prime_UTR
CTCAACCTCCTCAAGGCTTT+TGG 0.126998 7_2:+24302260 None:intergenic
TCTACTGTTGTGGCCCTTTA+AGG 0.152881 7_2:-24302780 Msa1053640:CDS
CATTAAGAATGTTCCAAATT+TGG 0.168759 7_2:-24301880 Msa1053640:CDS
ACATCTTGCAGTACCAAATT+TGG 0.176778 7_2:+24301867 None:intergenic
TGTAGTGTATTGTAGTATTT+TGG 0.180452 7_2:+24303357 None:intergenic
TCCTTGTTGGTGGCTCTTCT+AGG 0.204201 7_2:-24302025 Msa1053640:CDS
TTTGAATTGACTTCAAAATT+TGG 0.211928 7_2:+24303320 None:intergenic
GCAGATGCAAAGAGGTTAAT+TGG 0.250254 7_2:-24302836 Msa1053640:intron
AGACTATCAAGAGAGGAAAT+TGG 0.272565 7_2:-24301513 Msa1053640:CDS
AACCCAACCAACACTGTCTT+TGG 0.279913 7_2:-24303063 Msa1053640:intron
AATGTTGAAGCTGCTTATTT+TGG 0.289308 7_2:-24301127 Msa1053640:three_prime_UTR
ATTACAATTATGAATGAAAA+AGG 0.298174 7_2:-24301537 Msa1053640:CDS
GGAAATTGGGAGAATGATTC+AGG 0.304359 7_2:-24301499 Msa1053640:CDS
GATCAATTCTGCAATGATAA+AGG 0.305844 7_2:-24301331 Msa1053640:CDS
TGCTTATGGTGCCGCTGTTC+AGG 0.322627 7_2:-24301922 Msa1053640:CDS
TCTCTAGGTACGGCAATAAA+AGG 0.322674 7_2:-24301834 Msa1053640:CDS
TGCAATAGCTGCTTCACTTT+GGG 0.324854 7_2:+24301999 None:intergenic
GAAAATAATGAAGGATAATA+TGG 0.330020 7_2:-24301388 Msa1053640:CDS
CTTACTCGTGTGTTGGAGTA+TGG 0.335848 7_2:-24303212 Msa1053640:CDS
CCTGATGAGGCTGTTGCTTA+TGG 0.340665 7_2:-24301936 Msa1053640:CDS
CAAGTTTGAGCAATTGAATA+TGG 0.343806 7_2:-24302129 Msa1053640:CDS
CCTCGGTTTGTTTGAGCTCC+CGG 0.344457 7_2:-24301667 Msa1053640:CDS
CCGCGAGGTGCACGTGAAAC+CGG 0.357680 7_2:+24301648 None:intergenic
GTAATCACTGCATTCTTAAC+AGG 0.359063 7_2:+24302623 None:intergenic
CAGCATCACCAATCAGCCTT+TGG 0.360159 7_2:+24303106 None:intergenic
AAAGAGATTCTTAATTTGTA+AGG 0.363987 7_2:+24301005 None:intergenic
ATCAATTCTGCAATGATAAA+GGG 0.364361 7_2:-24301330 Msa1053640:CDS
AGCACCGGATATGACCTTAA+AGG 0.369858 7_2:+24302766 None:intergenic
GTTTAAGAGGAAGAACAAAA+AGG 0.374551 7_2:-24302297 Msa1053640:CDS
ATAAACCCAAATGAAAATAC+TGG 0.376884 7_2:+24301725 None:intergenic
CTGCCTGTGAGAGGGCAAAA+AGG 0.378093 7_2:-24302235 Msa1053640:CDS
CTCTGATGAGGAAAGTGATT+CGG 0.383117 7_2:-24301196 Msa1053640:CDS
ATACAGACGTATCTTCCTTC+TGG 0.385016 7_2:+24301286 None:intergenic
CCATAAGCAACAGCCTCATC+AGG 0.392319 7_2:+24301936 None:intergenic
CCCAAAATTACTTCACAGTA+AGG 0.393135 7_2:+24304634 None:intergenic
GACTATCAAGAGAGGAAATT+GGG 0.399203 7_2:-24301512 Msa1053640:CDS
TATTCTCTTGTCTTCTTGAC+AGG 0.401842 7_2:+24301771 None:intergenic
TTGATCTTCACTTTGTCTAA+AGG 0.405234 7_2:+24301348 None:intergenic
AATATCACCTGCATCTTTAG+TGG 0.406579 7_2:+24302565 None:intergenic
AAGGGGAAAAGTTTGATTGA+TGG 0.409606 7_2:-24301312 Msa1053640:CDS
AGCATCACCAATCAGCCTTT+GGG 0.410141 7_2:+24303107 None:intergenic
TACCAAAGACAGTGTTGGTT+GGG 0.410143 7_2:+24303061 None:intergenic
ACTGCGGCGGCTCTTGCATA+TGG 0.414217 7_2:-24302506 Msa1053640:CDS
ACTAATTCCCAAAGGCTGAT+TGG 0.414254 7_2:-24303114 Msa1053640:CDS
TCTGATGAGGAAAGTGATTC+GGG 0.420687 7_2:-24301195 Msa1053640:CDS
CATATTCAATTGCTCAAACT+TGG 0.426023 7_2:+24302130 None:intergenic
GACAGGAATAGACGAGTTCC+TGG 0.426963 7_2:+24301788 None:intergenic
TTTGATGTCAAGGCCACTGC+TGG 0.427311 7_2:-24302380 Msa1053640:CDS
AAAGATGCAGGTGATATTGC+TGG 0.430331 7_2:-24302560 Msa1053640:CDS
TTGCAATAGCTGCTTCACTT+TGG 0.431323 7_2:+24301998 None:intergenic
ATTCAAATCTTCTCTACAAA+CGG 0.432854 7_2:-24303304 Msa1053640:five_prime_UTR
GCTATGAACAAGATCAATAA+AGG 0.432948 7_2:-24301222 Msa1053640:CDS
GCACCGGATATGACCTTAAA+GGG 0.434687 7_2:+24302767 None:intergenic
GGCAATAAAAGGAGATATCA+TGG 0.454183 7_2:-24301823 Msa1053640:CDS
TTGCTGATGCTAAGATGGAC+AGG 0.455472 7_2:-24302067 Msa1053640:CDS
GGATCTCTTTGAAAAGTGTA+TGG 0.458969 7_2:-24302108 Msa1053640:CDS
AGTCAAAGCAGTCAATGCTT+TGG 0.459893 7_2:-24301433 Msa1053640:CDS
TTTATCTTTGACCTTGGCGG+TGG 0.462714 7_2:-24302443 Msa1053640:CDS
TTTGTCTAAAGGAGCGAGCT+TGG 0.465590 7_2:+24301359 None:intergenic
GTAGATGAAATTGTCCTTGT+TGG 0.472433 7_2:-24302038 Msa1053640:CDS
TTGTAGTTCACAAGAATTGT+CGG 0.473999 7_2:+24302734 None:intergenic
TGGCCCTTTAAGGTCATATC+CGG 0.475690 7_2:-24302770 Msa1053640:CDS
ACTTTGTCAAGGAGTTTAAG+AGG 0.477094 7_2:-24302310 Msa1053640:CDS
TTGCCGTACCTAGAGACAAT+GGG 0.480183 7_2:+24301841 None:intergenic
GACCTAGATGCTATATATCA+AGG 0.488303 7_2:-24302182 Msa1053640:CDS
TCAGGAAGCTGACAATTTCA+AGG 0.490366 7_2:-24301481 Msa1053640:CDS
GAAATTATTCACAATGATCA+AGG 0.492859 7_2:-24303168 Msa1053640:CDS
GATGAAATTGTCCTTGTTGG+TGG 0.494528 7_2:-24302035 Msa1053640:CDS
TGTGAATCATTGAAATAAGC+AGG 0.496737 7_2:+24302596 None:intergenic
CAGGCTGCTTTGCTTTGCGA+AGG 0.499600 7_2:-24301903 Msa1053640:CDS
TTGTCTTGCTGATGCTAAGA+TGG 0.502095 7_2:-24302072 Msa1053640:CDS
GAGCATGGAGTAGAGATTGA+AGG 0.504895 7_2:-24304481 Msa1053640:five_prime_UTR
ATGATTATCTTTACAATGTG+AGG 0.513333 7_2:-24301410 Msa1053640:CDS
TCATGGATGTTGTGATTCCC+AGG 0.515360 7_2:-24301806 Msa1053640:CDS
AAATATGAGGGAGTTGCAAT+CGG 0.516973 7_2:-24303252 Msa1053640:CDS
GGCACGACTTACTCGTGTGT+TGG 0.523542 7_2:-24303219 Msa1053640:CDS
ACACACTAGAGAGGAGAGAA+GGG 0.524014 7_2:-24304530 Msa1053640:five_prime_UTR
GTTGCAATCGGAATTGACCT+TGG 0.528825 7_2:-24303240 Msa1053640:CDS
CAATGTGAGGAAAATAATGA+AGG 0.538560 7_2:-24301397 Msa1053640:CDS
TGTCGGTTTGTCATCAGCAC+CGG 0.539904 7_2:+24302751 None:intergenic
CACACACTAGAGAGGAGAGA+AGG 0.541426 7_2:-24304531 Msa1053640:five_prime_UTR
AAATAAGGTCTTTGATGTCA+AGG 0.548086 7_2:-24302390 Msa1053640:CDS
CAATCTCTTGCATCTGTGAG+AGG 0.551808 7_2:+24302666 None:intergenic
TACCCCATTGTCTCTAGGTA+CGG 0.556219 7_2:-24301844 Msa1053640:CDS
GATGTTACCCCATTGTCTCT+AGG 0.558088 7_2:-24301849 Msa1053640:CDS
TGCTTTGCAATAGATGCTGA+TGG 0.559642 7_2:-24301609 Msa1053640:CDS
AAGCAAAGCAGCCTGAACAG+CGG 0.559679 7_2:+24301911 None:intergenic
CGAAGAGCCACTAAAGATGC+AGG 0.564548 7_2:-24302572 Msa1053640:CDS
TACCTTGATATATAGCATCT+AGG 0.567285 7_2:+24302180 None:intergenic
TATGCAAGAGCCGCCGCAGT+CGG 0.567463 7_2:+24302509 None:intergenic
GATAATAAACGAACCGACTG+CGG 0.570334 7_2:-24302522 Msa1053640:CDS
ATGCAAAGAGGTTAATTGGA+AGG 0.571352 7_2:-24302832 Msa1053640:CDS
GGCAGTTCTCAACCTCCTCA+AGG 0.573614 7_2:+24302253 None:intergenic
TAAATTACCAAAGACAGTGT+TGG 0.578436 7_2:+24303056 None:intergenic
TTTGATTGATGGCAACCAGA+AGG 0.578508 7_2:-24301301 Msa1053640:CDS
ATTGCCGTACCTAGAGACAA+TGG 0.578569 7_2:+24301840 None:intergenic
AACAGTGAGAACAACTTCCT+CGG 0.580816 7_2:-24301684 Msa1053640:CDS
TTACCAAAGACAGTGTTGGT+TGG 0.584440 7_2:+24303060 None:intergenic
TCTTGTGAACTACAAGGGTG+AGG 0.592468 7_2:-24302726 Msa1053640:CDS
AATATTAAATGTCTCTGCAG+TGG 0.594411 7_2:-24301586 Msa1053640:CDS
TTGCTTTCACTAATTCCCAA+AGG 0.594534 7_2:-24303122 Msa1053640:CDS
TCAGAGGGAAGAGAAGAGCA+TGG 0.595929 7_2:-24304496 Msa1053640:five_prime_UTR
TATAGCATCTAGGTCAATTG+TGG 0.597011 7_2:+24302190 None:intergenic
GGTTGAGAACTGCCTGTGAG+AGG 0.597343 7_2:-24302244 Msa1053640:CDS
TAGGTGAGTGTCTCCAGCAG+TGG 0.598292 7_2:+24302367 None:intergenic
GACAATTCTTGTGAACTACA+AGG 0.599895 7_2:-24302732 Msa1053640:CDS
GTTGAGAACTGCCTGTGAGA+GGG 0.603407 7_2:-24302243 Msa1053640:CDS
TCAATTCTGCAATGATAAAG+GGG 0.603500 7_2:-24301329 Msa1053640:CDS
TAAAGCATTGCAAATCAACA+AGG 0.603747 7_2:-24304581 Msa1053640:five_prime_UTR
CAATAAAGGTTACTCTGATG+AGG 0.603780 7_2:-24301208 Msa1053640:CDS
CCCAAATGAAAATACTGGAT+AGG 0.606810 7_2:+24301730 None:intergenic
ACAGGAATAGACGAGTTCCT+GGG 0.608529 7_2:+24301789 None:intergenic
TATCAAAGTCTTCACCGCCT+AGG 0.609377 7_2:+24302348 None:intergenic
TGAAGACTTTGATAACAGAA+TGG 0.610392 7_2:-24302339 Msa1053640:CDS
TTCATTCACTTGAAGCACGA+TGG 0.611483 7_2:-24303280 Msa1053640:exon
TGCTGATGCTAAGATGGACA+GGG 0.617353 7_2:-24302066 Msa1053640:CDS
CATCAAAAGTTCCACCGCCA+AGG 0.617660 7_2:+24302432 None:intergenic
CAGTAGATCATTCTGAACAA+TGG 0.620189 7_2:+24302796 None:intergenic
TTAGTGAAAGCAACACAAGA+AGG 0.625764 7_2:+24303132 None:intergenic
TTCAGAATGATCTACTGTTG+TGG 0.632222 7_2:-24302790 Msa1053640:CDS
TCGGTGAAATTGAATTCAAG+AGG 0.632435 7_2:-24304610 Msa1053640:five_prime_UTR
AATGGTGAATCACTTTGTCA+AGG 0.634243 7_2:-24302321 Msa1053640:CDS
CATAAGCAACAGCCTCATCA+GGG 0.634330 7_2:+24301937 None:intergenic
CAAGAGCATTAACCCTGATG+AGG 0.639574 7_2:-24301949 Msa1053640:CDS
ACTGCTGGAGACACTCACCT+AGG 0.643459 7_2:-24302365 Msa1053640:CDS
AATAAACGAACCGACTGCGG+CGG 0.650930 7_2:-24302519 Msa1053640:CDS
ACACACTACACACACTAGAG+AGG 0.653071 7_2:-24304539 Msa1053640:five_prime_UTR
CACACTAGAGAGGAGAGAAG+GGG 0.653267 7_2:-24304529 Msa1053640:five_prime_UTR
CACACGAGTAAGTCGTGCCA+AGG 0.653849 7_2:+24303223 None:intergenic
AAAAGGAAGACTATCAAGAG+AGG 0.655033 7_2:-24301520 Msa1053640:CDS
GCATGAGCAGAACGATCGTG+TGG 0.659349 7_2:-24303190 Msa1053640:CDS
ACACTAGAGAGGAGAGAAGG+GGG 0.660781 7_2:-24304528 Msa1053640:five_prime_UTR
ACAATTCTTGTGAACTACAA+GGG 0.663306 7_2:-24302731 Msa1053640:CDS
GTGGGAACCCAAAAGCCTTG+AGG 0.668086 7_2:-24302268 Msa1053640:CDS
GGAACCCAAAAGCCTTGAGG+AGG 0.669169 7_2:-24302265 Msa1053640:CDS
TCCTAGAAGAGCCACCAACA+AGG 0.672363 7_2:+24302024 None:intergenic
AAAGCATTGCAAATCAACAA+GGG 0.678487 7_2:-24304580 Msa1053640:five_prime_UTR
TTGCTGGTCTCAATGTAATG+CGG 0.689400 7_2:-24302544 Msa1053640:CDS
ACAGATGCAAGAGATTGCAG+AGG 0.712941 7_2:-24302660 Msa1053640:CDS
TGCCGTACCTAGAGACAATG+GGG 0.716106 7_2:+24301842 None:intergenic
GCTGGAGACACTCACCTAGG+CGG 0.737514 7_2:-24302362 Msa1053640:CDS
GACACTTTCATATGACACTG+AGG 0.737805 7_2:-24302213 Msa1053640:CDS
GCTGATGCTAAGATGGACAG+GGG 0.747969 7_2:-24302065 Msa1053640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAATCTTAATTAGTT+TGG - chr7_2:24301793-24301812 Msa1053640:CDS 10.0%
!! TATTCTTACAATAAAAAATA+AGG - chr7_2:24303198-24303217 Msa1053640:CDS 10.0%
!! ATTACAATTATGAATGAAAA+AGG - chr7_2:24304066-24304085 Msa1053640:intron 15.0%
!!! TTAAATTTGTCATCTTTTGT+TGG - chr7_2:24301145-24301164 Msa1053640:three_prime_UTR 20.0%
!!! ATTGATTTTATCACATGATT+AGG - chr7_2:24301338-24301357 Msa1053640:CDS 20.0%
!!! ATCAAACAAAGTGTTAATTT+AGG - chr7_2:24301543-24301562 Msa1053640:CDS 20.0%
!! AACAATTAACATACTAACAT+CGG + chr7_2:24302022-24302041 None:intergenic 20.0%
!!! TTTGAATTGACTTCAAAATT+TGG + chr7_2:24302286-24302305 None:intergenic 20.0%
!! ATATTATACATCACCATATT+AGG - chr7_2:24302658-24302677 Msa1053640:CDS 20.0%
!! TATTATACATCACCATATTA+GGG - chr7_2:24302659-24302678 Msa1053640:CDS 20.0%
!!! AATATTTTTATCTTTGACCT+TGG - chr7_2:24303154-24303173 Msa1053640:CDS 20.0%
!! GAAAATAATGAAGGATAATA+TGG - chr7_2:24304215-24304234 Msa1053640:intron 20.0%
!!! TGTATTTGTAGAATTTTTGA+AGG - chr7_2:24304335-24304354 Msa1053640:intron 20.0%
!!! AAAGAGATTCTTAATTTGTA+AGG + chr7_2:24304601-24304620 None:intergenic 20.0%
!! TGAATAGCTAACTATTTTCT+AGG - chr7_2:24301226-24301245 Msa1053640:CDS 25.0%
!! GAATAGCTAACTATTTTCTA+GGG - chr7_2:24301227-24301246 Msa1053640:CDS 25.0%
! ATCAATAGAACAAACTTGAT+TGG + chr7_2:24301324-24301343 None:intergenic 25.0%
! AACTGATTATTAACATGCAA+AGG + chr7_2:24301374-24301393 None:intergenic 25.0%
! TGATTGGAAGACTAAAATTA+AGG + chr7_2:24301473-24301492 None:intergenic 25.0%
!! GAAAAGCATAAAGTGTAAAA+AGG + chr7_2:24301501-24301520 None:intergenic 25.0%
!! TACTTGTTAATTAATCCATG+TGG - chr7_2:24301816-24301835 Msa1053640:CDS 25.0%
!!! TGTATTGTAGTATTTTGGAA+AGG + chr7_2:24302244-24302263 None:intergenic 25.0%
!! TGTAGTGTATTGTAGTATTT+TGG + chr7_2:24302249-24302268 None:intergenic 25.0%
! ATTCAAATCTTCTCTACAAA+CGG - chr7_2:24302299-24302318 Msa1053640:CDS 25.0%
! GAAATTATTCACAATGATCA+AGG - chr7_2:24302435-24302454 Msa1053640:CDS 25.0%
! CACTAAAAATTAAACAATGC+TGG + chr7_2:24302587-24302606 None:intergenic 25.0%
! GTTGATATGAAAATGAAAAG+AGG - chr7_2:24302720-24302739 Msa1053640:CDS 25.0%
! TTGCATCTGCAAAAAATTAA+GGG + chr7_2:24302757-24302776 None:intergenic 25.0%
! TTTGCATCTGCAAAAAATTA+AGG + chr7_2:24302758-24302777 None:intergenic 25.0%
! AAGAACAAAAAGGATATTAG+TGG - chr7_2:24303316-24303335 Msa1053640:five_prime_UTR 25.0%
! AGAACAAAAAGGATATTAGT+GGG - chr7_2:24303317-24303336 Msa1053640:five_prime_UTR 25.0%
! CATTAAGAATGTTCCAAATT+TGG - chr7_2:24303723-24303742 Msa1053640:intron 25.0%
! ATAAACCCAAATGAAAATAC+TGG + chr7_2:24303881-24303900 None:intergenic 25.0%
!!! TATTTTCATTTGGGTTTATG+AGG - chr7_2:24303882-24303901 Msa1053640:intron 25.0%
!!! ATTTTCATTTGGGTTTATGA+GGG - chr7_2:24303883-24303902 Msa1053640:intron 25.0%
!! ATTGCAAAGCAAACTTTTAT+CGG + chr7_2:24303985-24304004 None:intergenic 25.0%
! ATGATTATCTTTACAATGTG+AGG - chr7_2:24304193-24304212 Msa1053640:intron 25.0%
! ATCAATTCTGCAATGATAAA+GGG - chr7_2:24304273-24304292 Msa1053640:intron 25.0%
! ACCTTACTGTGAAGTAATTT+TGG - chr7_2:24300968-24300987 Msa1053640:three_prime_UTR 30.0%
! CCTTACTGTGAAGTAATTTT+GGG - chr7_2:24300969-24300988 Msa1053640:three_prime_UTR 30.0%
! CTTACTGTGAAGTAATTTTG+GGG - chr7_2:24300970-24300989 Msa1053640:three_prime_UTR 30.0%
!! TAAAGCATTGCAAATCAACA+AGG - chr7_2:24301022-24301041 Msa1053640:three_prime_UTR 30.0%
!! AAAGCATTGCAAATCAACAA+GGG - chr7_2:24301023-24301042 Msa1053640:three_prime_UTR 30.0%
!!! CTAACTATTTTCTAGGGTTT+AGG - chr7_2:24301233-24301252 Msa1053640:CDS 30.0%
GTGTAAAAAGGTTGAATGAT+TGG + chr7_2:24301489-24301508 None:intergenic 30.0%
AACAAGTAGTAGAATAGCTT+CGG + chr7_2:24301762-24301781 None:intergenic 30.0%
AAAAGATTATCGTATCCACA+TGG + chr7_2:24301834-24301853 None:intergenic 30.0%
!! GAGTACAAGAAGTATTTGTT+GGG + chr7_2:24301903-24301922 None:intergenic 30.0%
!! TGAGTACAAGAAGTATTTGT+TGG + chr7_2:24301904-24301923 None:intergenic 30.0%
AATAGTAGTCACATTGAAGA+AGG - chr7_2:24302060-24302079 Msa1053640:CDS 30.0%
ACGATGGCAAAAAAATATGA+GGG - chr7_2:24302339-24302358 Msa1053640:CDS 30.0%
TAAATTACCAAAGACAGTGT+TGG + chr7_2:24302550-24302569 None:intergenic 30.0%
AAAGTAAACAAGCCCTAATA+TGG + chr7_2:24302674-24302693 None:intergenic 30.0%
!!! AATTTTTTGCAGATGCAAAG+AGG - chr7_2:24302759-24302778 Msa1053640:CDS 30.0%
TTGTAGTTCACAAGAATTGT+CGG + chr7_2:24302872-24302891 None:intergenic 30.0%
ACAATTCTTGTGAACTACAA+GGG - chr7_2:24302872-24302891 Msa1053640:intron 30.0%
TGTGAATCATTGAAATAAGC+AGG + chr7_2:24303010-24303029 None:intergenic 30.0%
! ATTTTTATCTTTGACCTTGG+CGG - chr7_2:24303157-24303176 Msa1053640:CDS 30.0%
AAATAAGGTCTTTGATGTCA+AGG - chr7_2:24303213-24303232 Msa1053640:CDS 30.0%
! TGAAGACTTTGATAACAGAA+TGG - chr7_2:24303264-24303283 Msa1053640:CDS 30.0%
GTTTAAGAGGAAGAACAAAA+AGG - chr7_2:24303306-24303325 Msa1053640:five_prime_UTR 30.0%
TACCTTGATATATAGCATCT+AGG + chr7_2:24303426-24303445 None:intergenic 30.0%
! ACTTTTGTTCATCAATCACT+CGG - chr7_2:24303449-24303468 Msa1053640:intron 30.0%
CATATTCAATTGCTCAAACT+TGG + chr7_2:24303476-24303495 None:intergenic 30.0%
CAAGTTTGAGCAATTGAATA+TGG - chr7_2:24303474-24303493 Msa1053640:intron 30.0%
!!! CTATTGCAAGACTTTTTCAA+GGG - chr7_2:24303619-24303638 Msa1053640:intron 30.0%
! ACCTATCCAGTATTTTCATT+TGG - chr7_2:24303872-24303891 Msa1053640:intron 30.0%
! CCTATCCAGTATTTTCATTT+GGG - chr7_2:24303873-24303892 Msa1053640:intron 30.0%
AATATTAAATGTCTCTGCAG+TGG - chr7_2:24304017-24304036 Msa1053640:intron 30.0%
CAATGTGAGGAAAATAATGA+AGG - chr7_2:24304206-24304225 Msa1053640:intron 30.0%
TTGATCTTCACTTTGTCTAA+AGG + chr7_2:24304258-24304277 None:intergenic 30.0%
GATCAATTCTGCAATGATAA+AGG - chr7_2:24304272-24304291 Msa1053640:intron 30.0%
TCAATTCTGCAATGATAAAG+GGG - chr7_2:24304274-24304293 Msa1053640:intron 30.0%
GCTATGAACAAGATCAATAA+AGG - chr7_2:24304381-24304400 Msa1053640:intron 30.0%
! AATGTTGAAGCTGCTTATTT+TGG - chr7_2:24304476-24304495 Msa1053640:five_prime_UTR 30.0%
CCCAAAATTACTTCACAGTA+AGG + chr7_2:24300972-24300991 None:intergenic 35.0%
TCGGTGAAATTGAATTCAAG+AGG - chr7_2:24300993-24301012 Msa1053640:three_prime_UTR 35.0%
!!! ACTATTTTCTAGGGTTTAGG+TGG - chr7_2:24301236-24301255 Msa1053640:CDS 35.0%
TCTAGTCTCAATTGTCCTAT+AGG + chr7_2:24301433-24301452 None:intergenic 35.0%
! TACTAACATCGGTTGTTTGA+AGG + chr7_2:24302011-24302030 None:intergenic 35.0%
CACGATGGCAAAAAAATATG+AGG - chr7_2:24302338-24302357 Msa1053640:CDS 35.0%
AAATATGAGGGAGTTGCAAT+CGG - chr7_2:24302351-24302370 Msa1053640:CDS 35.0%
TTAGTGAAAGCAACACAAGA+AGG + chr7_2:24302474-24302493 None:intergenic 35.0%
TTGCTTTCACTAATTCCCAA+AGG - chr7_2:24302481-24302500 Msa1053640:CDS 35.0%
! GTTTGAAGAAGCCTGATTTT+TGG + chr7_2:24302523-24302542 None:intergenic 35.0%
ATGCAAAGAGGTTAATTGGA+AGG - chr7_2:24302771-24302790 Msa1053640:CDS 35.0%
CAGTAGATCATTCTGAACAA+TGG + chr7_2:24302810-24302829 None:intergenic 35.0%
TTCAGAATGATCTACTGTTG+TGG - chr7_2:24302813-24302832 Msa1053640:CDS 35.0%
GACAATTCTTGTGAACTACA+AGG - chr7_2:24302871-24302890 Msa1053640:intron 35.0%
GTAATCACTGCATTCTTAAC+AGG + chr7_2:24302983-24303002 None:intergenic 35.0%
AATATCACCTGCATCTTTAG+TGG + chr7_2:24303041-24303060 None:intergenic 35.0%
!! CACAATTAGCTCTCTTTTGA+AGG + chr7_2:24303123-24303142 None:intergenic 35.0%
AATGGTGAATCACTTTGTCA+AGG - chr7_2:24303282-24303301 Msa1053640:exon 35.0%
ACTTTGTCAAGGAGTTTAAG+AGG - chr7_2:24303293-24303312 Msa1053640:five_prime_UTR 35.0%
TATAGCATCTAGGTCAATTG+TGG + chr7_2:24303416-24303435 None:intergenic 35.0%
GACCTAGATGCTATATATCA+AGG - chr7_2:24303421-24303440 Msa1053640:intron 35.0%
! CTTTTGTTCATCAATCACTC+GGG - chr7_2:24303450-24303469 Msa1053640:intron 35.0%
! GGATCTCTTTGAAAAGTGTA+TGG - chr7_2:24303495-24303514 Msa1053640:intron 35.0%
GTAGATGAAATTGTCCTTGT+TGG - chr7_2:24303565-24303584 Msa1053640:intron 35.0%
!!! GCTATTGCAAGACTTTTTCA+AGG - chr7_2:24303618-24303637 Msa1053640:intron 35.0%
ACATCTTGCAGTACCAAATT+TGG + chr7_2:24303739-24303758 None:intergenic 35.0%
GGCAATAAAAGGAGATATCA+TGG - chr7_2:24303780-24303799 Msa1053640:intron 35.0%
TATTCTCTTGTCTTCTTGAC+AGG + chr7_2:24303835-24303854 None:intergenic 35.0%
CCCAAATGAAAATACTGGAT+AGG + chr7_2:24303876-24303895 None:intergenic 35.0%
! CAAAGCAAACTTTTATCGGA+AGG + chr7_2:24303981-24304000 None:intergenic 35.0%
AAAAGGAAGACTATCAAGAG+AGG - chr7_2:24304083-24304102 Msa1053640:intron 35.0%
AGACTATCAAGAGAGGAAAT+TGG - chr7_2:24304090-24304109 Msa1053640:intron 35.0%
GACTATCAAGAGAGGAAATT+GGG - chr7_2:24304091-24304110 Msa1053640:intron 35.0%
AAGGGGAAAAGTTTGATTGA+TGG - chr7_2:24304291-24304310 Msa1053640:intron 35.0%
CAATAAAGGTTACTCTGATG+AGG - chr7_2:24304395-24304414 Msa1053640:intron 35.0%
!!! CTGTGAAGTAATTTTGGGGT+CGG - chr7_2:24300974-24300993 Msa1053640:three_prime_UTR 40.0%
GTAAAAAGTAACGACGAGGT+AGG + chr7_2:24301732-24301751 None:intergenic 40.0%
CCAAGTAAAAAGTAACGACG+AGG + chr7_2:24301736-24301755 None:intergenic 40.0%
!!! CCTCGTCGTTACTTTTTACT+TGG - chr7_2:24301733-24301752 Msa1053640:CDS 40.0%
CTTCAATGTGATAGCTAGTG+TGG + chr7_2:24302108-24302127 None:intergenic 40.0%
ACTAGCTATCACATTGAAGC+AGG - chr7_2:24302109-24302128 Msa1053640:CDS 40.0%
CATTGAAGCAGGAAAAGTCA+TGG - chr7_2:24302120-24302139 Msa1053640:CDS 40.0%
GAAAAGTCATGGCTTCTGAT+AGG - chr7_2:24302131-24302150 Msa1053640:CDS 40.0%
TTCATTCACTTGAAGCACGA+TGG - chr7_2:24302323-24302342 Msa1053640:CDS 40.0%
ACTAATTCCCAAAGGCTGAT+TGG - chr7_2:24302489-24302508 Msa1053640:CDS 40.0%
!! TACCAAAGACAGTGTTGGTT+GGG + chr7_2:24302545-24302564 None:intergenic 40.0%
!! TTACCAAAGACAGTGTTGGT+TGG + chr7_2:24302546-24302565 None:intergenic 40.0%
GCAGATGCAAAGAGGTTAAT+TGG - chr7_2:24302767-24302786 Msa1053640:CDS 40.0%
!!! AGAGATTGCAGAGGCATTTT+TGG - chr7_2:24302952-24302971 Msa1053640:intron 40.0%
AAAGATGCAGGTGATATTGC+TGG - chr7_2:24303043-24303062 Msa1053640:intron 40.0%
! TTGCTGGTCTCAATGTAATG+CGG - chr7_2:24303059-24303078 Msa1053640:intron 40.0%
GATAATAAACGAACCGACTG+CGG - chr7_2:24303081-24303100 Msa1053640:CDS 40.0%
GACACTTTCATATGACACTG+AGG - chr7_2:24303390-24303409 Msa1053640:intron 40.0%
TTGTCTTGCTGATGCTAAGA+TGG - chr7_2:24303531-24303550 Msa1053640:intron 40.0%
GATGAAATTGTCCTTGTTGG+TGG - chr7_2:24303568-24303587 Msa1053640:intron 40.0%
TGCAATAGCTGCTTCACTTT+GGG + chr7_2:24303607-24303626 None:intergenic 40.0%
TTGCAATAGCTGCTTCACTT+TGG + chr7_2:24303608-24303627 None:intergenic 40.0%
!!! GCAAGACTTTTTCAAGGGAA+AGG - chr7_2:24303624-24303643 Msa1053640:intron 40.0%
TCTCTAGGTACGGCAATAAA+AGG - chr7_2:24303769-24303788 Msa1053640:intron 40.0%
AACAGTGAGAACAACTTCCT+CGG - chr7_2:24303919-24303938 Msa1053640:intron 40.0%
TGCTTTGCAATAGATGCTGA+TGG - chr7_2:24303994-24304013 Msa1053640:intron 40.0%
TCTGCAGTGGAAGAAAAAAG+TGG - chr7_2:24304030-24304049 Msa1053640:intron 40.0%
GGAAATTGGGAGAATGATTC+AGG - chr7_2:24304104-24304123 Msa1053640:intron 40.0%
TCAGGAAGCTGACAATTTCA+AGG - chr7_2:24304122-24304141 Msa1053640:intron 40.0%
AGTCAAAGCAGTCAATGCTT+TGG - chr7_2:24304170-24304189 Msa1053640:intron 40.0%
! TTTGATTGATGGCAACCAGA+AGG - chr7_2:24304302-24304321 Msa1053640:intron 40.0%
ATACAGACGTATCTTCCTTC+TGG + chr7_2:24304320-24304339 None:intergenic 40.0%
CTCTGATGAGGAAAGTGATT+CGG - chr7_2:24304407-24304426 Msa1053640:intron 40.0%
TCTGATGAGGAAAGTGATTC+GGG - chr7_2:24304408-24304427 Msa1053640:intron 40.0%
ACACACTACACACACTAGAG+AGG - chr7_2:24301064-24301083 Msa1053640:three_prime_UTR 45.0%
ACACACTAGAGAGGAGAGAA+GGG - chr7_2:24301073-24301092 Msa1053640:three_prime_UTR 45.0%
GAGCATGGAGTAGAGATTGA+AGG - chr7_2:24301122-24301141 Msa1053640:three_prime_UTR 45.0%
ATCGTACTGCACTTAACTGG+TGG - chr7_2:24301406-24301425 Msa1053640:CDS 45.0%
! CACTTAACTGGTGGACCTAT+AGG - chr7_2:24301415-24301434 Msa1053640:CDS 45.0%
ATCGCGAATGACCAAACGAA+AGG - chr7_2:24301579-24301598 Msa1053640:CDS 45.0%
TCGCGAATGACCAAACGAAA+GGG - chr7_2:24301580-24301599 Msa1053640:CDS 45.0%
AATGACCAAACGAAAGGGCT+TGG - chr7_2:24301585-24301604 Msa1053640:CDS 45.0%
AATCACCAAGCCCTTTCGTT+TGG + chr7_2:24301593-24301612 None:intergenic 45.0%
GTTGCAATCGGAATTGACCT+TGG - chr7_2:24302363-24302382 Msa1053640:CDS 45.0%
CTTACTCGTGTGTTGGAGTA+TGG - chr7_2:24302391-24302410 Msa1053640:CDS 45.0%
AGCATCACCAATCAGCCTTT+GGG + chr7_2:24302499-24302518 None:intergenic 45.0%
! TGGTGATGCTGCCAAAAATC+AGG - chr7_2:24302509-24302528 Msa1053640:CDS 45.0%
AACCCAACCAACACTGTCTT+TGG - chr7_2:24302540-24302559 Msa1053640:CDS 45.0%
TCTACTGTTGTGGCCCTTTA+AGG - chr7_2:24302823-24302842 Msa1053640:CDS 45.0%
!! TGGCCCTTTAAGGTCATATC+CGG - chr7_2:24302833-24302852 Msa1053640:CDS 45.0%
GCACCGGATATGACCTTAAA+GGG + chr7_2:24302839-24302858 None:intergenic 45.0%
! AGCACCGGATATGACCTTAA+AGG + chr7_2:24302840-24302859 None:intergenic 45.0%
TCTTGTGAACTACAAGGGTG+AGG - chr7_2:24302877-24302896 Msa1053640:intron 45.0%
CAATCTCTTGCATCTGTGAG+AGG + chr7_2:24302940-24302959 None:intergenic 45.0%
ACAGATGCAAGAGATTGCAG+AGG - chr7_2:24302943-24302962 Msa1053640:intron 45.0%
TTTATCTTTGACCTTGGCGG+TGG - chr7_2:24303160-24303179 Msa1053640:CDS 45.0%
TATCAAAGTCTTCACCGCCT+AGG + chr7_2:24303258-24303277 None:intergenic 45.0%
! TCAACCTCCTCAAGGCTTTT+GGG + chr7_2:24303345-24303364 None:intergenic 45.0%
TTGCTGATGCTAAGATGGAC+AGG - chr7_2:24303536-24303555 Msa1053640:intron 45.0%
TGCTGATGCTAAGATGGACA+GGG - chr7_2:24303537-24303556 Msa1053640:intron 45.0%
!! CAAGAGCATTAACCCTGATG+AGG - chr7_2:24303654-24303673 Msa1053640:intron 45.0%
CATAAGCAACAGCCTCATCA+GGG + chr7_2:24303669-24303688 None:intergenic 45.0%
GATGTTACCCCATTGTCTCT+AGG - chr7_2:24303754-24303773 Msa1053640:intron 45.0%
TACCCCATTGTCTCTAGGTA+CGG - chr7_2:24303759-24303778 Msa1053640:intron 45.0%
TTGCCGTACCTAGAGACAAT+GGG + chr7_2:24303765-24303784 None:intergenic 45.0%
ATTGCCGTACCTAGAGACAA+TGG + chr7_2:24303766-24303785 None:intergenic 45.0%
TCATGGATGTTGTGATTCCC+AGG - chr7_2:24303797-24303816 Msa1053640:intron 45.0%
ACAGGAATAGACGAGTTCCT+GGG + chr7_2:24303817-24303836 None:intergenic 45.0%
TTTGTCTAAAGGAGCGAGCT+TGG + chr7_2:24304247-24304266 None:intergenic 45.0%
CACACACTAGAGAGGAGAGA+AGG - chr7_2:24301072-24301091 Msa1053640:three_prime_UTR 50.0%
CACACTAGAGAGGAGAGAAG+GGG - chr7_2:24301074-24301093 Msa1053640:three_prime_UTR 50.0%
ACACTAGAGAGGAGAGAAGG+GGG - chr7_2:24301075-24301094 Msa1053640:three_prime_UTR 50.0%
TCAGAGGGAAGAGAAGAGCA+TGG - chr7_2:24301107-24301126 Msa1053640:three_prime_UTR 50.0%
GCGATCGTACTGCACTTAAC+TGG - chr7_2:24301403-24301422 Msa1053640:CDS 50.0%
GAGAGAGAGAGAGAGGTCTA+GGG + chr7_2:24301680-24301699 None:intergenic 50.0%
AGAGAGAGAGAGAGAGGTCT+AGG + chr7_2:24301681-24301700 None:intergenic 50.0%
CAACTGAGAGAGAGAGAGAG+AGG + chr7_2:24301687-24301706 None:intergenic 50.0%
CAGCATCACCAATCAGCCTT+TGG + chr7_2:24302500-24302519 None:intergenic 50.0%
!! TGTCGGTTTGTCATCAGCAC+CGG + chr7_2:24302855-24302874 None:intergenic 50.0%
CGAAGAGCCACTAAAGATGC+AGG - chr7_2:24303031-24303050 Msa1053640:intron 50.0%
AATAAACGAACCGACTGCGG+CGG - chr7_2:24303084-24303103 Msa1053640:CDS 50.0%
CATCAAAAGTTCCACCGCCA+AGG + chr7_2:24303174-24303193 None:intergenic 50.0%
TTTGATGTCAAGGCCACTGC+TGG - chr7_2:24303223-24303242 Msa1053640:CDS 50.0%
! CTCAACCTCCTCAAGGCTTT+TGG + chr7_2:24303346-24303365 None:intergenic 50.0%
GTTGAGAACTGCCTGTGAGA+GGG - chr7_2:24303360-24303379 Msa1053640:five_prime_UTR 50.0%
! TGTCCTTTTTGCCCTCTCAC+AGG + chr7_2:24303374-24303393 None:intergenic 50.0%
GCTGATGCTAAGATGGACAG+GGG - chr7_2:24303538-24303557 Msa1053640:intron 50.0%
!! TCCTTGTTGGTGGCTCTTCT+AGG - chr7_2:24303578-24303597 Msa1053640:intron 50.0%
TCCTAGAAGAGCCACCAACA+AGG + chr7_2:24303582-24303601 None:intergenic 50.0%
CCATAAGCAACAGCCTCATC+AGG + chr7_2:24303670-24303689 None:intergenic 50.0%
! CCTGATGAGGCTGTTGCTTA+TGG - chr7_2:24303667-24303686 Msa1053640:intron 50.0%
AAGCAAAGCAGCCTGAACAG+CGG + chr7_2:24303695-24303714 None:intergenic 50.0%
TGCCGTACCTAGAGACAATG+GGG + chr7_2:24303764-24303783 None:intergenic 50.0%
GACAGGAATAGACGAGTTCC+TGG + chr7_2:24303818-24303837 None:intergenic 50.0%
AAGGGGGTCGAACACTTCAG+AGG - chr7_2:24301091-24301110 Msa1053640:three_prime_UTR 55.0%
AGGGGGTCGAACACTTCAGA+GGG - chr7_2:24301092-24301111 Msa1053640:three_prime_UTR 55.0%
CACACGAGTAAGTCGTGCCA+AGG + chr7_2:24302383-24302402 None:intergenic 55.0%
GGCACGACTTACTCGTGTGT+TGG - chr7_2:24302384-24302403 Msa1053640:CDS 55.0%
GCATGAGCAGAACGATCGTG+TGG - chr7_2:24302413-24302432 Msa1053640:CDS 55.0%
TAGGTGAGTGTCTCCAGCAG+TGG + chr7_2:24303239-24303258 None:intergenic 55.0%
ACTGCTGGAGACACTCACCT+AGG - chr7_2:24303238-24303257 Msa1053640:CDS 55.0%
GTGGGAACCCAAAAGCCTTG+AGG - chr7_2:24303335-24303354 Msa1053640:five_prime_UTR 55.0%
GGAACCCAAAAGCCTTGAGG+AGG - chr7_2:24303338-24303357 Msa1053640:five_prime_UTR 55.0%
GGCAGTTCTCAACCTCCTCA+AGG + chr7_2:24303353-24303372 None:intergenic 55.0%
GGTTGAGAACTGCCTGTGAG+AGG - chr7_2:24303359-24303378 Msa1053640:five_prime_UTR 55.0%
CTGCCTGTGAGAGGGCAAAA+AGG - chr7_2:24303368-24303387 Msa1053640:five_prime_UTR 55.0%
!! TGCTTATGGTGCCGCTGTTC+AGG - chr7_2:24303681-24303700 Msa1053640:intron 55.0%
! CAGGCTGCTTTGCTTTGCGA+AGG - chr7_2:24303700-24303719 Msa1053640:intron 55.0%
! CCTCGGTTTGTTTGAGCTCC+CGG - chr7_2:24303936-24303955 Msa1053640:intron 55.0%
! ACTTTTATCGGAAGGCCGCG+AGG + chr7_2:24303973-24303992 None:intergenic 55.0%
TATGCAAGAGCCGCCGCAGT+CGG + chr7_2:24303097-24303116 None:intergenic 60.0%
ACTGCGGCGGCTCTTGCATA+TGG - chr7_2:24303097-24303116 Msa1053640:CDS 60.0%
GCTGGAGACACTCACCTAGG+CGG - chr7_2:24303241-24303260 Msa1053640:CDS 60.0%
CCGGGAGCTCAAACAAACCG+AGG + chr7_2:24303939-24303958 None:intergenic 60.0%
CGCGAGGTGCACGTGAAACC+GGG + chr7_2:24303957-24303976 None:intergenic 65.0%
CCGCGAGGTGCACGTGAAAC+CGG + chr7_2:24303958-24303977 None:intergenic 65.0%
CCGGTTTCACGTGCACCTCG+CGG - chr7_2:24303955-24303974 Msa1053640:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 24300958 24304667 24300958 ID=Msa1053640;Name=Msa1053640
chr7_2 mRNA 24300958 24304667 24300958 ID=Msa1053640-mRNA-1;Parent=Msa1053640;Name=Msa1053640-mRNA-1;_AED=0.15;_eAED=0.15;_QI=318|1|1|1|0.5|0.33|3|227|629
chr7_2 exon 24300958 24302854 24300958 ID=Msa1053640-mRNA-1:exon:5279;Parent=Msa1053640-mRNA-1
chr7_2 exon 24303064 24303392 24303064 ID=Msa1053640-mRNA-1:exon:5278;Parent=Msa1053640-mRNA-1
chr7_2 exon 24304459 24304667 24304459 ID=Msa1053640-mRNA-1:exon:5277;Parent=Msa1053640-mRNA-1
chr7_2 five_prime_UTR 24304459 24304667 24304459 ID=Msa1053640-mRNA-1:five_prime_utr;Parent=Msa1053640-mRNA-1
chr7_2 five_prime_UTR 24303284 24303392 24303284 ID=Msa1053640-mRNA-1:five_prime_utr;Parent=Msa1053640-mRNA-1
chr7_2 CDS 24303064 24303283 24303064 ID=Msa1053640-mRNA-1:cds;Parent=Msa1053640-mRNA-1
chr7_2 CDS 24301185 24302854 24301185 ID=Msa1053640-mRNA-1:cds;Parent=Msa1053640-mRNA-1
chr7_2 three_prime_UTR 24300958 24301184 24300958 ID=Msa1053640-mRNA-1:three_prime_utr;Parent=Msa1053640-mRNA-1
Gene Sequence

>Msa1053640

ATGGCAAAAAAATATGAGGGAGTTGCAATCGGAATTGACCTTGGCACGACTTACTCGTGTGTTGGAGTATGGCATGAGCAGAACGATCGTGTGGAAATTATTCACAATGATCAAGGAAACAAAACAACACCTTCTTGTGTTGCTTTCACTAATTCCCAAAGGCTGATTGGTGATGCTGCCAAAAATCAGGCTTCTTCAAACCCAACCAACACTGTCTTTGATGCAAAGAGGTTAATTGGAAGGAAATATAGTGATTCCATTGTTCAGAATGATCTACTGTTGTGGCCCTTTAAGGTCATATCCGGTGCTGATGACAAACCGACAATTCTTGTGAACTACAAGGGTGAGGAAAAACACTTTGTTGCTGAAGAAATATCATCTGTGATCCTCTCACAGATGCAAGAGATTGCAGAGGCATTTTTGGAGTCACCTGTTAAGAATGCAGTGATTACTGTACCTGCTTATTTCAATGATTCACAACGAAGAGCCACTAAAGATGCAGGTGATATTGCTGGTCTCAATGTAATGCGGATAATAAACGAACCGACTGCGGCGGCTCTTGCATATGGCCTTCAAAAGAGAGCTAATTGTGTTGATAAGAGAAATATTTTTATCTTTGACCTTGGCGGTGGAACTTTTGATGTGTCTATTCTTACAATAAAAAATAAGGTCTTTGATGTCAAGGCCACTGCTGGAGACACTCACCTAGGCGGTGAAGACTTTGATAACAGAATGGTGAATCACTTTGTCAAGGAGTTTAAGAGGAAGAACAAAAAGGATATTAGTGGGAACCCAAAAGCCTTGAGGAGGTTGAGAACTGCCTGTGAGAGGGCAAAAAGGACACTTTCATATGACACTGAGGCCACAATTGACCTAGATGCTATATATCAAGGTATTGACTTTTGTTCATCAATCACTCGGGCCAAGTTTGAGCAATTGAATATGGATCTCTTTGAAAAGTGTATGGATACTGTTAATAGTTGTCTTGCTGATGCTAAGATGGACAGGGGTAGTGTAGATGAAATTGTCCTTGTTGGTGGCTCTTCTAGGATTCCCAAAGTGAAGCAGCTATTGCAAGACTTTTTCAAGGGAAAGGAATTATGCAAGAGCATTAACCCTGATGAGGCTGTTGCTTATGGTGCCGCTGTTCAGGCTGCTTTGCTTTGCGAAGGCATTAAGAATGTTCCAAATTTGGTACTGCAAGATGTTACCCCATTGTCTCTAGGTACGGCAATAAAAGGAGATATCATGGATGTTGTGATTCCCAGGAACTCGTCTATTCCTGTCAAGAAGACAAGAGAATATGTTACAACTGAAGATAACCTATCCAGTATTTTCATTTGGGTTTATGAGGGTGAAAGATCAATGAACAGTGAGAACAACTTCCTCGGTTTGTTTGAGCTCCCGGTTTCACGTGCACCTCGCGGCCTTCCGATAAAAGTTTGCTTTGCAATAGATGCTGATGGAATATTAAATGTCTCTGCAGTGGAAGAAAAAAGTGGTAATAAGAAAGATATTACAATTATGAATGAAAAAGGAAGACTATCAAGAGAGGAAATTGGGAGAATGATTCAGGAAGCTGACAATTTCAAGGCTCAAGATATGATGTTCAGAAAGAAAGTCAAAGCAGTCAATGCTTTGGATGATTATCTTTACAATGTGAGGAAAATAATGAAGGATAATATGGTCAGTTCCAAGCTCGCTCCTTTAGACAAAGTGAAGATCAATTCTGCAATGATAAAGGGGAAAAGTTTGATTGATGGCAACCAGAAGGAAGATACGTCTGTATTTGTAGAATTTTTGAAGGAGCTTGAGAGCATCTCTGAGTCTGCTATGAACAAGATCAATAAAGGTTACTCTGATGAGGAAAGTGATTCGGGCTCTGATTGA
Protein sequence

>Msa1053640

MAKKYEGVAIGIDLGTTYSCVGVWHEQNDRVEIIHNDQGNKTTPSCVAFTNSQRLIGDAAKNQASSNPTNTVFDAKRLIGRKYSDSIVQNDLLLWPFKVISGADDKPTILVNYKGEEKHFVAEEISSVILSQMQEIAEAFLESPVKNAVITVPAYFNDSQRRATKDAGDIAGLNVMRIINEPTAAALAYGLQKRANCVDKRNIFIFDLGGGTFDVSILTIKNKVFDVKATAGDTHLGGEDFDNRMVNHFVKEFKRKNKKDISGNPKALRRLRTACERAKRTLSYDTEATIDLDAIYQGIDFCSSITRAKFEQLNMDLFEKCMDTVNSCLADAKMDRGSVDEIVLVGGSSRIPKVKQLLQDFFKGKELCKSINPDEAVAYGAAVQAALLCEGIKNVPNLVLQDVTPLSLGTAIKGDIMDVVIPRNSSIPVKKTREYVTTEDNLSSIFIWVYEGERSMNSENNFLGLFELPVSRAPRGLPIKVCFAIDADGILNVSAVEEKSGNKKDITIMNEKGRLSREEIGRMIQEADNFKAQDMMFRKKVKAVNALDDYLYNVRKIMKDNMVSSKLAPLDKVKINSAMIKGKSLIDGNQKEDTSVFVEFLKELESISESAMNKINKGYSDEESDSGSD*