AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1141970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1141970 MtrunA17_Chr8g0350731 82.643 628 109 0 1 628 29 656 0.0 1070
Msa1141970 MtrunA17_Chr7g0223711 81.583 619 113 1 1 618 1 619 0.0 1050
Msa1141970 MtrunA17_Chr7g0223631 82.039 618 97 2 1 618 1 604 0.0 1021
Msa1141970 MtrunA17_Chr7g0223751 78.435 626 135 0 1 626 1 626 0.0 1020
Msa1141970 MtrunA17_Chr7g0223701 77.445 634 134 3 1 625 1 634 0.0 999
Msa1141970 MtrunA17_Chr7g0223621 76.797 612 142 0 1 612 1 612 0.0 978
Msa1141970 MtrunA17_Chr7g0223731 75.122 615 153 0 1 615 1 615 0.0 964
Msa1141970 MtrunA17_Chr7g0223031 74.510 612 156 0 1 612 1 612 0.0 958
Msa1141970 MtrunA17_Chr7g0248131 74.359 624 155 4 1 619 1 624 0.0 933
Msa1141970 MtrunA17_Chr7g0248151 74.074 621 158 2 1 618 1 621 0.0 921
Msa1141970 MtrunA17_Chr7g0223741 73.064 594 159 1 1 593 1 594 0.0 918
Msa1141970 MtrunA17_Chr7g0223681 80.492 528 103 0 91 618 2 529 0.0 865
Msa1141970 MtrunA17_Chr7g0223541 74.820 556 139 1 74 628 31 586 0.0 864
Msa1141970 MtrunA17_Chr7g0223781 68.750 608 187 2 1 607 1 606 0.0 859
Msa1141970 MtrunA17_Chr2g0293581 67.258 620 199 4 1 616 1 620 0.0 847
Msa1141970 MtrunA17_Chr7g0223801 65.472 614 211 1 1 614 1 613 0.0 838
Msa1141970 MtrunA17_Chr7g0221661 66.069 613 207 1 1 612 1 613 0.0 833
Msa1141970 MtrunA17_Chr5g0427901 64.331 628 208 3 1 614 1 626 0.0 825
Msa1141970 MtrunA17_Chr7g0223181 65.696 618 207 4 1 615 1 616 0.0 825
Msa1141970 MtrunA17_Chr2g0298851 65.154 617 211 4 1 614 1 616 0.0 823
Msa1141970 MtrunA17_Chr4g0031321 66.066 610 202 4 1 607 1 608 0.0 823
Msa1141970 MtrunA17_Chr4g0031301 65.902 610 203 4 1 607 1 608 0.0 821
Msa1141970 MtrunA17_Chr7g0262821 64.895 621 213 4 1 618 1 619 0.0 817
Msa1141970 MtrunA17_Chr7g0223291 64.320 625 218 4 1 622 1 623 0.0 816
Msa1141970 MtrunA17_Chr7g0223721 64.448 616 217 2 1 614 1 616 0.0 810
Msa1141970 MtrunA17_Chr7g0233311 63.695 617 221 2 1 614 1 617 0.0 810
Msa1141970 MtrunA17_Chr7g0223851 63.754 618 222 2 1 616 10 627 0.0 808
Msa1141970 MtrunA17_Chr2g0298861 63.446 621 213 4 1 607 1 621 0.0 805
Msa1141970 MtrunA17_Chr4g0073741 63.607 621 220 5 1 618 1 618 0.0 800
Msa1141970 MtrunA17_Chr4g0040931 63.383 609 221 2 1 607 1 609 0.0 794
Msa1141970 MtrunA17_Chr7g0225671 63.857 617 218 4 2 616 11 624 0.0 794
Msa1141970 MtrunA17_Chr2g0287631 65.154 617 212 3 1 614 1 617 0.0 791
Msa1141970 MtrunA17_Chr7g0217971 62.312 597 201 1 1 597 1 573 0.0 770
Msa1141970 MtrunA17_Chr7g0223821 62.806 613 221 3 1 607 1 612 0.0 769
Msa1141970 MtrunA17_Chr2g0296391 69.508 528 159 2 1 526 1 528 0.0 764
Msa1141970 MtrunA17_Chr4g0012541 60.680 618 232 3 1 616 1 609 0.0 746
Msa1141970 MtrunA17_Chr7g0233301 59.319 617 217 3 1 614 1 586 0.0 742
Msa1141970 MtrunA17_Chr7g0223831 58.983 629 224 6 1 626 1 598 0.0 727
Msa1141970 MtrunA17_Chr7g0215261 58.891 613 213 5 1 609 1 578 0.0 723
Msa1141970 MtrunA17_Chr8g0390821 56.203 669 224 8 1 615 1 654 0.0 715
Msa1141970 MtrunA17_Chr7g0228281 57.282 618 217 4 1 616 62 634 0.0 700
Msa1141970 MtrunA17_Chr2g0293601 65.637 518 142 3 1 516 1 484 0.0 696
Msa1141970 MtrunA17_Chr6g0462601 57.302 630 256 5 1 619 1 628 0.0 694
Msa1141970 MtrunA17_Chr6g0462681 57.027 619 261 4 1 616 1 617 0.0 686
Msa1141970 MtrunA17_Chr2g0331381 62.082 538 143 3 9 546 6 482 0.0 674
Msa1141970 MtrunA17_Chr6g0462711 56.210 628 259 6 8 623 9 632 0.0 674
Msa1141970 MtrunA17_Chr6g0462641 57.993 588 232 5 1 578 1 583 0.0 668
Msa1141970 MtrunA17_Chr6g0462771 57.659 581 231 5 8 578 8 583 0.0 652
Msa1141970 MtrunA17_Chr2g0284681 57.679 560 226 6 9 559 8 565 0.0 641
Msa1141970 MtrunA17_Chr8g0388761 52.462 589 269 8 7 590 36 618 0.0 607
Msa1141970 MtrunA17_Chr8g0388671 52.632 589 268 8 7 590 36 618 0.0 605
Msa1141970 MtrunA17_Chr2g0293561 73.529 374 99 0 1 374 1 374 0.0 603
Msa1141970 MtrunA17_Chr1g0166551 51.974 608 179 4 9 614 5 501 0.0 597
Msa1141970 MtrunA17_Chr6g0462611 54.862 545 243 3 74 616 22 565 0.0 579
Msa1141970 MtrunA17_Chr2g0299921 71.059 387 108 2 2 388 1022 1404 0.0 574
Msa1141970 MtrunA17_Chr2g0299921 68.462 390 118 3 2 390 1406 1791 1.93e-170 530
Msa1141970 MtrunA17_Chr2g0299791 68.814 388 117 2 1 388 1034 1417 0.0 554
Msa1141970 MtrunA17_Chr2g0299851 67.268 388 123 2 1 388 1030 1413 0.0 552
Msa1141970 MtrunA17_Chr2g0299821 66.076 395 130 2 1 393 1 393 0.0 542
Msa1141970 MtrunA17_Chr2g0299821 45.161 93 40 4 451 534 390 480 1.94e-12 70.1
Msa1141970 MtrunA17_Chr2g0293271 58.756 434 109 3 21 454 43 406 8.75e-174 500
Msa1141970 MtrunA17_Chr2g0299881 64.925 402 129 6 2 395 1031 1428 4.84e-171 525
Msa1141970 MtrunA17_Chr2g0299881 56.716 67 29 0 184 250 1409 1475 3.23e-17 86.3
Msa1141970 MtrunA17_Chr6g0462861 46.780 590 282 10 1 579 1 569 5.28e-164 484
Msa1141970 MtrunA17_Chr2g0279901 45.878 558 278 11 10 560 57 597 2.06e-152 455
Msa1141970 MtrunA17_Chr1g0151991 71.134 291 84 0 1 291 1 291 4.55e-152 440
Msa1141970 MtrunA17_Chr7g0245521 73.626 273 72 0 1 273 1 273 1.07e-151 438
Msa1141970 MtrunA17_Chr4g0049501 44.624 558 286 10 10 560 54 595 3.01e-150 449
Msa1141970 MtrunA17_Chr2g0277021 43.051 590 312 13 10 592 72 644 1.19e-142 431
Msa1141970 MtrunA17_Chr7g0245531 58.466 313 129 1 305 616 2 314 3.58e-120 359
Msa1141970 MtrunA17_Chr7g0223761 50.404 371 141 3 241 609 3 332 8.66e-117 352
Msa1141970 MtrunA17_Chr7g0223671 84.324 185 29 0 74 258 8 192 2.85e-113 337
Msa1141970 MtrunA17_Chr1g0152001 55.405 296 130 2 315 609 1 295 2.71e-107 326
Msa1141970 MtrunA17_Chr1g0188601 74.869 191 48 0 92 282 1 191 7.51e-103 310
Msa1141970 MtrunA17_Chr6g0462631 49.394 330 118 5 91 416 13 297 1.18e-98 303
Msa1141970 MtrunA17_Chr6g0462751 46.532 346 125 4 67 409 12 300 3.38e-94 292
Msa1141970 MtrunA17_Chr1g0188611 51.864 295 133 3 322 614 1 288 1.79e-81 258
Msa1141970 MtrunA17_Chr5g0394391 34.127 504 304 13 8 493 28 521 1.16e-80 265
Msa1141970 MtrunA17_Chr7g0223771 73.856 153 40 0 93 245 1 153 3.91e-78 245
Msa1141970 MtrunA17_Chr6g0462791 65.730 178 60 1 109 286 2 178 6.75e-77 242
Msa1141970 MtrunA17_Chr4g0004331 35.862 435 256 7 10 428 4 431 4.45e-75 257
Msa1141970 MtrunA17_Chr2g0331901 33.710 442 276 5 10 438 4 441 1.44e-74 255
Msa1141970 MtrunA17_Chr5g0444001 34.112 428 272 6 10 431 4 427 1.60e-70 238
Msa1141970 MtrunA17_Chr4g0046881 75.172 145 33 1 131 275 10 151 2.41e-70 224
Msa1141970 MtrunA17_Chr3g0098761 31.838 468 296 7 10 475 4 450 4.22e-69 239
Msa1141970 MtrunA17_Chr7g0223861 72.519 131 36 0 78 208 4 134 2.79e-62 202
Msa1141970 MtrunA17_Chr4g0064621 33.078 523 315 14 8 504 139 652 2.27e-60 213
Msa1141970 MtrunA17_Chr3g0120101 27.941 544 343 13 10 510 27 564 8.73e-57 206
Msa1141970 MtrunA17_Chr6g0462701 53.889 180 59 1 91 270 13 168 8.59e-56 186
Msa1141970 MtrunA17_Chr4g0046871 81.553 103 19 0 333 435 3 105 4.98e-52 174
Msa1141970 MtrunA17_Chr4g0060241 29.515 515 315 17 8 498 19 509 9.93e-51 184
Msa1141970 MtrunA17_Chr5g0394221 40.217 276 159 5 291 563 61 333 1.02e-50 179
Msa1141970 MtrunA17_Chr6g0481391 63.934 122 41 1 38 159 13 131 9.47e-47 160
Msa1141970 MtrunA17_Chr5g0442171 33.934 333 192 10 170 487 1 320 7.30e-45 162
Msa1141970 MtrunA17_Chr7g0245541 44.000 200 111 1 417 615 1 200 6.07e-44 155
Msa1141970 MtrunA17_Chr7g0223691 89.041 73 8 0 1 73 1 73 1.43e-41 145
Msa1141970 MtrunA17_Chr6g0462691 51.408 142 68 1 322 462 1 142 1.96e-41 147
Msa1141970 MtrunA17_Chr5g0394231 36.207 232 95 5 74 304 5 184 4.43e-41 147
Msa1141970 MtrunA17_Chr1g0188591 76.712 73 17 0 1 73 1 73 8.75e-33 121
Msa1141970 MtrunA17_Chr6g0462621 76.712 73 15 1 1 73 1 71 1.54e-30 114
Msa1141970 MtrunA17_Chr6g0481381 71.622 74 21 0 176 249 1 74 1.90e-30 118
Msa1141970 MtrunA17_Chr7g0223791 69.512 82 17 3 56 137 18 91 9.55e-28 110
Msa1141970 MtrunA17_Chr7g0223791 35.484 93 60 0 480 572 89 181 6.68e-12 64.7
Msa1141970 MtrunA17_Chr7g0221651 51.190 84 41 0 215 298 1 84 1.72e-23 95.1
Msa1141970 MtrunA17_Chr7g0223881 53.012 83 38 1 281 363 2 83 6.23e-23 93.2
Msa1141970 MtrunA17_Chr7g0223661 45.690 116 20 1 315 430 1 73 3.70e-22 90.9
Msa1141970 MtrunA17_Chr7g0223871 38.281 128 78 1 490 616 7 134 2.13e-18 82.0
Msa1141970 MtrunA17_Chr6g0462801 54.545 66 25 1 322 382 1 66 4.81e-16 73.2
Msa1141970 MtrunA17_Chr2g0284661 49.383 81 40 1 368 447 61 141 1.94e-15 73.9
Msa1141970 MtrunA17_Chr2g0284661 50.820 61 28 1 225 283 5 65 1.38e-11 62.8
Msa1141970 MtrunA17_Chr2g0299891 69.767 43 13 0 315 357 1 43 8.59e-15 69.7
Msa1141970 MtrunA17_Chr4g0064651 39.362 94 55 2 397 488 29 122 1.17e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1141970 AT3G12580.1 65.238 630 214 4 1 627 1 628 0.0 832
Msa1141970 AT5G02500.1 64.239 618 216 4 1 615 1 616 0.0 812
Msa1141970 AT5G02490.1 63.916 618 218 4 1 615 1 616 0.0 807
Msa1141970 AT3G09440.1 64.401 618 215 4 1 615 1 616 0.0 803
Msa1141970 AT3G09440.4 64.401 618 215 4 1 615 1 616 0.0 803
Msa1141970 AT3G09440.2 64.401 618 215 4 1 615 1 616 0.0 803
Msa1141970 AT3G09440.3 64.401 618 215 4 1 615 1 616 0.0 803
Msa1141970 AT1G56410.1 63.124 621 222 5 1 618 1 617 0.0 791
Msa1141970 AT1G16030.1 62.802 621 225 5 1 618 1 618 0.0 789
Msa1141970 AT5G28540.1 53.135 606 273 8 7 607 35 634 0.0 626
Msa1141970 AT5G42020.1 53.135 606 273 8 7 607 35 634 0.0 624
Msa1141970 AT5G42020.3 53.135 606 273 8 7 607 40 639 0.0 624
Msa1141970 AT5G02500.2 74.742 388 96 1 1 388 1 386 0.0 620
Msa1141970 AT5G02500.2 37.624 101 63 0 515 615 386 486 5.48e-12 68.9
Msa1141970 AT1G09080.2 52.202 613 283 7 7 615 40 646 0.0 612
Msa1141970 AT1G09080.1 52.202 613 283 7 7 615 50 656 0.0 611
Msa1141970 AT5G42020.2 56.173 486 202 8 7 487 35 514 0.0 536
Msa1141970 AT5G09590.1 44.604 556 285 10 10 558 60 599 1.50e-147 443
Msa1141970 AT4G37910.1 44.624 558 286 10 10 560 55 596 4.57e-143 431
Msa1141970 AT4G37910.2 44.624 558 286 10 10 560 55 596 4.57e-143 431
Msa1141970 AT4G24280.1 44.624 558 287 11 10 560 81 623 9.84e-143 432
Msa1141970 AT5G49910.1 41.774 620 336 14 10 621 81 683 1.09e-141 429
Msa1141970 AT1G11660.4 30.066 602 359 11 10 558 4 596 3.21e-78 264
Msa1141970 AT1G11660.3 30.066 602 359 11 10 558 4 596 3.21e-78 264
Msa1141970 AT1G11660.1 30.066 602 359 11 10 558 4 596 3.21e-78 264
Msa1141970 AT1G79930.2 34.722 432 265 5 10 428 4 431 6.61e-77 261
Msa1141970 AT1G79920.3 35.023 434 261 6 10 428 4 431 1.16e-76 259
Msa1141970 AT1G79920.2 35.023 434 261 6 10 428 4 431 1.16e-76 259
Msa1141970 AT1G79920.4 35.023 434 261 6 10 428 4 431 1.16e-76 259
Msa1141970 AT1G79920.1 35.023 434 261 6 10 428 4 431 1.33e-76 259
Msa1141970 AT1G79930.1 34.722 432 265 5 10 428 4 431 2.43e-76 260
Msa1141970 AT1G11660.2 30.619 565 332 10 47 558 2 559 2.62e-72 247
Msa1141970 AT2G32120.1 32.816 515 311 15 8 506 29 524 1.24e-70 239
Msa1141970 AT2G32120.2 32.816 515 311 15 8 506 29 524 1.24e-70 239
Msa1141970 AT4G16660.1 27.672 524 336 12 6 493 23 539 3.15e-58 210
Msa1141970 AT4G16660.2 27.672 524 336 12 6 493 47 563 3.77e-58 211

Find 156 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTACTGTGAAGTAATTT+TGG 0.095272 7_4:+15753779 Msa1141970:five_prime_UTR
CTCAACCTCCTCAAGGCTTT+TGG 0.126998 7_4:-15756170 None:intergenic
TCTACTGTTGTGGCCCTTTA+AGG 0.152881 7_4:+15755650 Msa1141970:CDS
CATTAAGAATGTTCCAAATT+TGG 0.168759 7_4:+15756550 Msa1141970:CDS
ACATCTTGCAGTACCAAATT+TGG 0.176778 7_4:-15756563 None:intergenic
TGTAGTGTATTGTAGTATTT+TGG 0.180452 7_4:-15755067 None:intergenic
TCCTTGTTGGTGGCTCTTCT+AGG 0.204201 7_4:+15756405 Msa1141970:CDS
TTTGAATTGACTTCAAAATT+TGG 0.211928 7_4:-15755104 None:intergenic
GTGATAATCCTTAGTGATTA+AGG 0.230689 7_4:+15753664 Msa1141970:five_prime_UTR
GCAGATGCAAAGAGGTTAAT+TGG 0.250254 7_4:+15755594 Msa1141970:intron
ATTAGATAAAGAGAAGAAAA+AGG 0.268935 7_4:+15753730 Msa1141970:five_prime_UTR
AGACTATCAAGAGAGGAAAT+TGG 0.272565 7_4:+15756917 Msa1141970:CDS
AACCCAACCAACACTGTCTT+TGG 0.279913 7_4:+15755361 Msa1141970:CDS
AATGTTGAAGCTGCTTATTT+TGG 0.289308 7_4:+15757303 Msa1141970:three_prime_UTR
TGCTTATGGTGCAGCTGTTC+AGG 0.300910 7_4:+15756508 Msa1141970:CDS
GGAAATTGGGAGAATGATTC+AGG 0.304359 7_4:+15756931 Msa1141970:CDS
GATCAATTCTGCAATGATAA+AGG 0.305844 7_4:+15757099 Msa1141970:CDS
TCTCTAGGTAAGGCAATAAA+AGG 0.313719 7_4:+15756596 Msa1141970:CDS
ATTACAATTATGAATGAAAA+AGG 0.315076 7_4:+15756893 Msa1141970:CDS
TGCAATAGCTGCTTCACTTT+GGG 0.324854 7_4:-15756431 None:intergenic
GAAAATAATGAAGGATAATA+TGG 0.327716 7_4:+15757042 Msa1141970:CDS
CTTACTCGTGTGTTGGAGTA+TGG 0.335848 7_4:+15755212 Msa1141970:CDS
CCTGATGAGGCTGTTGCTTA+TGG 0.340665 7_4:+15756494 Msa1141970:CDS
CAAGTTTGAGCAATTGAATA+TGG 0.343806 7_4:+15756301 Msa1141970:CDS
CCTCGGTTTGTTTGAGCTCC+CGG 0.344457 7_4:+15756763 Msa1141970:CDS
CCGCGAGGTGCACGTGAAAC+CGG 0.357680 7_4:-15756782 None:intergenic
GTAATCACTGCATTCTTAAC+AGG 0.359063 7_4:-15755807 None:intergenic
CAGCATCACCAATCAGCCTT+TGG 0.360159 7_4:-15755318 None:intergenic
ATCAATTCTGCAATGATAAA+GGG 0.364361 7_4:+15757100 Msa1141970:CDS
AGCACCGGATATGACCTTAA+AGG 0.369858 7_4:-15755664 None:intergenic
ATAAACCCAAATGAAAATAC+TGG 0.376884 7_4:-15756705 None:intergenic
CTGCCTGTGAGAGGGCAAAA+AGG 0.378093 7_4:+15756195 Msa1141970:CDS
GTGATGTAGTTTAGCGGATT+GGG 0.378983 7_4:-15753553 None:intergenic
CTCTGATGAGGAAAGTGATT+CGG 0.383117 7_4:+15757234 Msa1141970:CDS
ATACAGACGTATCTTCCTTC+TGG 0.385016 7_4:-15757144 None:intergenic
CCCAAAATTACTTCACAGTA+AGG 0.386314 7_4:-15753780 None:intergenic
CCATAAGCAACAGCCTCATC+AGG 0.392319 7_4:-15756494 None:intergenic
GACTATCAAGAGAGGAAATT+GGG 0.399203 7_4:+15756918 Msa1141970:CDS
TATTCTCTTGTCTTCTTGAC+AGG 0.401842 7_4:-15756659 None:intergenic
AAGAACAAAGAGGATATTAG+TGG 0.402789 7_4:+15756143 Msa1141970:CDS
TTGATCTTCACTTTGTCTAA+AGG 0.405234 7_4:-15757082 None:intergenic
AATATCACCTGCATCTTTAG+TGG 0.406579 7_4:-15755865 None:intergenic
AAGGGGAAAAGTTTGATTGA+TGG 0.409606 7_4:+15757118 Msa1141970:CDS
AGCATCACCAATCAGCCTTT+GGG 0.410141 7_4:-15755317 None:intergenic
TACCAAAGACAGTGTTGGTT+GGG 0.410143 7_4:-15755363 None:intergenic
ACTGCGGCGGCTCTTGCATA+TGG 0.414217 7_4:+15755924 Msa1141970:CDS
ACTAATTCCCAAAGGCTGAT+TGG 0.414254 7_4:+15755310 Msa1141970:CDS
TCTGATGAGGAAAGTGATTC+GGG 0.420687 7_4:+15757235 Msa1141970:CDS
CATATTCAATTGCTCAAACT+TGG 0.426023 7_4:-15756300 None:intergenic
GGCAATAAAAGGAGATATCA+TGG 0.426308 7_4:+15756607 Msa1141970:CDS
GACAGGAATAGACGAGTTCC+TGG 0.426963 7_4:-15756642 None:intergenic
TTTGATGTCAAGGCCACTGC+TGG 0.427311 7_4:+15756050 Msa1141970:CDS
AAAGATGCAGGTGATATTGC+TGG 0.430331 7_4:+15755870 Msa1141970:CDS
TTGCAATAGCTGCTTCACTT+TGG 0.431323 7_4:-15756432 None:intergenic
ATTCAAATCTTCTCTACAAA+CGG 0.432854 7_4:+15755120 Msa1141970:five_prime_UTR
GCTATGAACAAGATCAATAA+AGG 0.432948 7_4:+15757208 Msa1141970:CDS
GCACCGGATATGACCTTAAA+GGG 0.434687 7_4:-15755663 None:intergenic
GTAGATGACATTGTCCTTGT+TGG 0.443783 7_4:+15756392 Msa1141970:CDS
TTGCTGATGCTAAGATGGAC+AGG 0.455472 7_4:+15756363 Msa1141970:CDS
TAAAGGAGCGAGCTTGGAAC+TGG 0.456104 7_4:-15757065 None:intergenic
GGATCTCTTTGAAAAGTGTA+TGG 0.458969 7_4:+15756322 Msa1141970:CDS
AGTCAAAGCAGTCAATGCTT+TGG 0.459893 7_4:+15756997 Msa1141970:CDS
TTTGTCTAAAGGAGCGAGCT+TGG 0.465590 7_4:-15757071 None:intergenic
TTGCCTTACCTAGAGACAAT+GGG 0.468774 7_4:-15756589 None:intergenic
TGTGATGTAGTTTAGCGGAT+TGG 0.469341 7_4:-15753554 None:intergenic
TTGTAGTTCACAAGAATTGT+CGG 0.473999 7_4:-15755696 None:intergenic
TGGCCCTTTAAGGTCATATC+CGG 0.475690 7_4:+15755660 Msa1141970:CDS
ACTTTGTCAAGGAGTTTAAG+AGG 0.477094 7_4:+15756120 Msa1141970:CDS
TGATAATCCTTAGTGATTAA+GGG 0.483485 7_4:+15753665 Msa1141970:five_prime_UTR
GACCTAGATGCTATATATCA+AGG 0.488303 7_4:+15756248 Msa1141970:CDS
TCAGGAAGCTGACAATTTCA+AGG 0.490366 7_4:+15756949 Msa1141970:CDS
AAGCATTCCCTTAATCACTA+AGG 0.490569 7_4:-15753672 None:intergenic
GAAATTATTCACAATGATCA+AGG 0.492859 7_4:+15755256 Msa1141970:CDS
GATGACATTGTCCTTGTTGG+TGG 0.494528 7_4:+15756395 Msa1141970:CDS
TGTGAATCATTGAAATAAGC+AGG 0.496737 7_4:-15755834 None:intergenic
CAGGCTGCTTTGCTTTGCGA+AGG 0.499600 7_4:+15756527 Msa1141970:CDS
TTGTCTTGCTGATGCTAAGA+TGG 0.502095 7_4:+15756358 Msa1141970:CDS
TCTCATGTGATGTAGTTTAG+CGG 0.502286 7_4:-15753559 None:intergenic
GAGCATGGAGTAGAGATTGA+AGG 0.504895 7_4:+15753932 Msa1141970:five_prime_UTR
ATGATTATCTTTACAATGTG+AGG 0.513333 7_4:+15757020 Msa1141970:CDS
TCATGGATGTTGTGATTCCC+AGG 0.515360 7_4:+15756624 Msa1141970:CDS
TTTATCTTTGACATTGGCGG+TGG 0.515845 7_4:+15755987 Msa1141970:CDS
AAATATGAGGGAGTTGCAAT+CGG 0.516973 7_4:+15755172 Msa1141970:CDS
GGCACGACTTACTCGTGTGT+TGG 0.523542 7_4:+15755205 Msa1141970:CDS
ACACACTAGAGAGGAGAGAA+GGG 0.524014 7_4:+15753884 Msa1141970:five_prime_UTR
CACACACTAGAGAGGAGAGA+AGG 0.526680 7_4:+15753883 Msa1141970:five_prime_UTR
ACATCACATGAGAAGAGAAA+AGG 0.527406 7_4:+15753569 Msa1141970:five_prime_UTR
GTTGCAATCGGAATTGACCT+TGG 0.528825 7_4:+15755184 Msa1141970:CDS
CAATGTGAGGAAAATAATGA+AGG 0.538560 7_4:+15757033 Msa1141970:CDS
TACCCCATTGTCTCTAGGTA+AGG 0.539302 7_4:+15756586 Msa1141970:CDS
TGTCGGTTTGTCATCAGCAC+CGG 0.539904 7_4:-15755679 None:intergenic
ATTGCCTTACCTAGAGACAA+TGG 0.547952 7_4:-15756590 None:intergenic
AAATAAGGTCTTTGATGTCA+AGG 0.548086 7_4:+15756040 Msa1141970:CDS
CAATCTCTTGCATCTGTGAG+AGG 0.551808 7_4:-15755764 None:intergenic
GATGTTACCCCATTGTCTCT+AGG 0.557331 7_4:+15756581 Msa1141970:CDS
TGCTTTGCAATAGATGCTGA+TGG 0.559642 7_4:+15756821 Msa1141970:CDS
CGAAGAGCCACTAAAGATGC+AGG 0.564548 7_4:+15755858 Msa1141970:CDS
TACCTTGATATATAGCATCT+AGG 0.567285 7_4:-15756250 None:intergenic
TATGCAAGAGCCGCCGCAGT+CGG 0.567463 7_4:-15755921 None:intergenic
GATAATAAACGAACCGACTG+CGG 0.570334 7_4:+15755908 Msa1141970:CDS
ATGCAAAGAGGTTAATTGGA+AGG 0.571352 7_4:+15755598 Msa1141970:CDS
GGCAGTTCTCAACCTCCTCA+AGG 0.573614 7_4:-15756177 None:intergenic
CGATAAAGGAGAGACACAAA+GGG 0.576825 7_4:+15753639 Msa1141970:five_prime_UTR
TAAATTACCAAAGACAGTGT+TGG 0.578436 7_4:-15755368 None:intergenic
TTTGATTGATGGCAACCAGA+AGG 0.578508 7_4:+15757129 Msa1141970:CDS
AACAGTGAGAACAACTTCCT+CGG 0.580816 7_4:+15756746 Msa1141970:CDS
TTGGTGAAATTGAATTCAAG+AGG 0.583755 7_4:+15753804 Msa1141970:five_prime_UTR
TTACCAAAGACAGTGTTGGT+TGG 0.584440 7_4:-15755364 None:intergenic
TCTTGTGAACTACAAGGGTG+AGG 0.592468 7_4:+15755704 Msa1141970:CDS
AATATTAAATGTCTCTGCAG+TGG 0.594411 7_4:+15756844 Msa1141970:CDS
TTGCTTTCACTAATTCCCAA+AGG 0.594534 7_4:+15755302 Msa1141970:CDS
TCAGAGAGAAGAGAAGAGCA+TGG 0.595929 7_4:+15753917 Msa1141970:five_prime_UTR
TATAGCATCTAGGTCAATTG+TGG 0.597011 7_4:-15756240 None:intergenic
GGTTGAGAACTGCCTGTGAG+AGG 0.597343 7_4:+15756186 Msa1141970:CDS
TAGGTGAGTGTCTCCAGCAG+TGG 0.598292 7_4:-15756063 None:intergenic
GACAATTCTTGTGAACTACA+AGG 0.599895 7_4:+15755698 Msa1141970:CDS
GTTGAGAACTGCCTGTGAGA+GGG 0.603407 7_4:+15756187 Msa1141970:CDS
TCAATTCTGCAATGATAAAG+GGG 0.603500 7_4:+15757101 Msa1141970:CDS
TAAAGCATTGCAAATCAACA+AGG 0.603747 7_4:+15753833 Msa1141970:five_prime_UTR
CAATAAAGGTTACTCTGATG+AGG 0.603780 7_4:+15757222 Msa1141970:CDS
CCCAAATGAAAATACTGGAT+AGG 0.606810 7_4:-15756700 None:intergenic
ACGATAAAGGAGAGACACAA+AGG 0.608222 7_4:+15753638 Msa1141970:five_prime_UTR
ACAGGAATAGACGAGTTCCT+GGG 0.608529 7_4:-15756641 None:intergenic
TATCAAAGTCTTCACCGCCT+AGG 0.609377 7_4:-15756082 None:intergenic
TGAAGACTTTGATAACAGAA+TGG 0.610392 7_4:+15756091 Msa1141970:CDS
TTCATTCACTTGAAGCACGA+TGG 0.611483 7_4:+15755144 Msa1141970:exon
TGCTGATGCTAAGATGGACA+GGG 0.617353 7_4:+15756364 Msa1141970:CDS
GTTTAAGAGGAAGAACAAAG+AGG 0.619405 7_4:+15756133 Msa1141970:CDS
CAGTAGATCATTCTGAACAA+TGG 0.620189 7_4:-15755634 None:intergenic
TTAGTGAAAGCAACACAAGA+AGG 0.625764 7_4:-15755292 None:intergenic
TTCAGAATGATCTACTGTTG+TGG 0.632222 7_4:+15755640 Msa1141970:CDS
AGAACAAAGAGGATATTAGT+GGG 0.633089 7_4:+15756144 Msa1141970:CDS
AATGGTGAATCACTTTGTCA+AGG 0.634243 7_4:+15756109 Msa1141970:CDS
CATAAGCAACAGCCTCATCA+GGG 0.634330 7_4:-15756493 None:intergenic
ACTGCTGGAGACACTCACCT+AGG 0.643459 7_4:+15756065 Msa1141970:CDS
AATAAACGAACCGACTGCGG+CGG 0.650930 7_4:+15755911 Msa1141970:CDS
ACACACTACACACACTAGAG+AGG 0.653071 7_4:+15753875 Msa1141970:five_prime_UTR
CACACGAGTAAGTCGTGCCA+AGG 0.653849 7_4:-15755201 None:intergenic
TGAGAAGAGAAAAGGAACAG+AGG 0.654298 7_4:+15753577 Msa1141970:five_prime_UTR
AAAAGGAAGACTATCAAGAG+AGG 0.655033 7_4:+15756910 Msa1141970:CDS
TTACTAAAGCAAGACCTCGA+CGG 0.655534 7_4:-15757492 None:intergenic
CAAAAGCATCAACCCTGATG+AGG 0.655652 7_4:+15756481 Msa1141970:CDS
GCATGAGCAGAACGATCGTG+TGG 0.659349 7_4:+15755234 Msa1141970:CDS
ACAATTCTTGTGAACTACAA+GGG 0.663306 7_4:+15755699 Msa1141970:CDS
GTGGGAACCCAAAAGCCTTG+AGG 0.668086 7_4:+15756162 Msa1141970:CDS
GGAACCCAAAAGCCTTGAGG+AGG 0.669169 7_4:+15756165 Msa1141970:CDS
TCCTAGAAGAGCCACCAACA+AGG 0.672363 7_4:-15756406 None:intergenic
AAAGCATTGCAAATCAACAA+GGG 0.678487 7_4:+15753834 Msa1141970:five_prime_UTR
CACACTAGAGAGGAGAGAAG+GGG 0.681269 7_4:+15753885 Msa1141970:five_prime_UTR
TGCCTTACCTAGAGACAATG+GGG 0.684179 7_4:-15756588 None:intergenic
TTGCTGGTCTCAATGTAATG+CGG 0.689400 7_4:+15755886 Msa1141970:CDS
ACAGATGCAAGAGATTGCAG+AGG 0.712941 7_4:+15755770 Msa1141970:CDS
GACACTTTCATACGACACTG+AGG 0.726186 7_4:+15756217 Msa1141970:CDS
GCTGGAGACACTCACCTAGG+CGG 0.737514 7_4:+15756068 Msa1141970:CDS
TAAAGGAGAGACACAAAGGG+CGG 0.745151 7_4:+15753642 Msa1141970:five_prime_UTR
GCTGATGCTAAGATGGACAG+GGG 0.747969 7_4:+15756365 Msa1141970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAATCTTAATTAGTT+TGG + chr7_4:15754614-15754633 Msa1141970:intron 10.0%
!! TATTCTTACAATAAAAAATA+AGG + chr7_4:15756025-15756044 Msa1141970:CDS 10.0%
!!! AATATTTTTATCTTTGACAT+TGG + chr7_4:15755981-15756000 Msa1141970:CDS 15.0%
!! ATTACAATTATGAATGAAAA+AGG + chr7_4:15756893-15756912 Msa1141970:CDS 15.0%
!!! AAAAAGATTCTTAATTTGTA+AGG - chr7_4:15757428-15757447 None:intergenic 15.0%
!!! TGTTTTGTTTTATACGATAA+AGG + chr7_4:15753625-15753644 Msa1141970:five_prime_UTR 20.0%
!!! ACCTTTTTTAAACAAACAAT+TGG + chr7_4:15753695-15753714 Msa1141970:five_prime_UTR 20.0%
!! ATTAGATAAAGAGAAGAAAA+AGG + chr7_4:15753730-15753749 Msa1141970:five_prime_UTR 20.0%
!! TTAGATAAAGAGAAGAAAAA+GGG + chr7_4:15753731-15753750 Msa1141970:five_prime_UTR 20.0%
!!! TTAAATTTGTCATCTTTTGT+TGG + chr7_4:15753955-15753974 Msa1141970:intron 20.0%
!!! ATTGATTTTATCACATGATT+AGG + chr7_4:15754148-15754167 Msa1141970:intron 20.0%
!!! ATCAAACAAAGTGTTAATTT+AGG + chr7_4:15754353-15754372 Msa1141970:intron 20.0%
!!! GGATTAATAGTTTTAGTAAA+GGG + chr7_4:15754406-15754425 Msa1141970:intron 20.0%
!! TTAATTAGAACTAGACATAA+AGG + chr7_4:15754454-15754473 Msa1141970:intron 20.0%
!! AACAATTAACATACTAACAT+CGG - chr7_4:15754843-15754862 None:intergenic 20.0%
!!! TTTGAATTGACTTCAAAATT+TGG - chr7_4:15755107-15755126 None:intergenic 20.0%
!! AACTAAAAATTAAACAATGC+TGG - chr7_4:15755408-15755427 None:intergenic 20.0%
!! ATATTATACATCACCATATT+AGG + chr7_4:15755478-15755497 Msa1141970:intron 20.0%
!! TATTATACATCACCATATTA+GGG + chr7_4:15755479-15755498 Msa1141970:intron 20.0%
!! GTTGATATGAAAATGAAAAT+AGG + chr7_4:15755547-15755566 Msa1141970:intron 20.0%
!! GAAAATAATGAAGGATAATA+TGG + chr7_4:15757042-15757061 Msa1141970:CDS 20.0%
!!! TGTATTTGTAGAATTTTTGA+AGG + chr7_4:15757162-15757181 Msa1141970:CDS 20.0%
!! TTTTTCTCTTCTTCTTTATG+CGG - chr7_4:15753603-15753622 None:intergenic 25.0%
! TGATAATCCTTAGTGATTAA+GGG + chr7_4:15753665-15753684 Msa1141970:five_prime_UTR 25.0%
! GCCAATTGTTTGTTTAAAAA+AGG - chr7_4:15753699-15753718 None:intergenic 25.0%
!! TGAATAGCTAACTATTTTCT+AGG + chr7_4:15754036-15754055 Msa1141970:intron 25.0%
!! GAATAGCTAACTATTTTCTA+GGG + chr7_4:15754037-15754056 Msa1141970:intron 25.0%
! ATCAATAGAACAAACTTGAT+TGG - chr7_4:15754134-15754153 None:intergenic 25.0%
! AACTGATTATTAACATGCAA+AGG - chr7_4:15754184-15754203 None:intergenic 25.0%
! TGATTGGAAGACTAAAATTA+AGG - chr7_4:15754283-15754302 None:intergenic 25.0%
!! GAAAAGCATAAAGTGTAAAA+AGG - chr7_4:15754311-15754330 None:intergenic 25.0%
! ACTAAAACTATTAATCCGTT+TGG - chr7_4:15754403-15754422 None:intergenic 25.0%
!!! CGGATTAATAGTTTTAGTAA+AGG + chr7_4:15754405-15754424 Msa1141970:intron 25.0%
!!! AATAGTTTTAGTAAAGGGAT+TGG + chr7_4:15754411-15754430 Msa1141970:intron 25.0%
!! TACTTGTTAATTAATCCATG+TGG + chr7_4:15754637-15754656 Msa1141970:intron 25.0%
!!! TGTATTGTAGTATTTTGGAA+AGG - chr7_4:15755065-15755084 None:intergenic 25.0%
!! TGTAGTGTATTGTAGTATTT+TGG - chr7_4:15755070-15755089 None:intergenic 25.0%
! ATTCAAATCTTCTCTACAAA+CGG + chr7_4:15755120-15755139 Msa1141970:five_prime_UTR 25.0%
! GAAATTATTCACAATGATCA+AGG + chr7_4:15755256-15755275 Msa1141970:CDS 25.0%
! TTGCATCTGCAAAAAATTAA+GGG - chr7_4:15755584-15755603 None:intergenic 25.0%
! TTTGCATCTGCAAAAAATTA+AGG - chr7_4:15755585-15755604 None:intergenic 25.0%
!! ATTTTTATCTTTGACATTGG+CGG + chr7_4:15755984-15756003 Msa1141970:CDS 25.0%
! CATTAAGAATGTTCCAAATT+TGG + chr7_4:15756550-15756569 Msa1141970:CDS 25.0%
! ATAAACCCAAATGAAAATAC+TGG - chr7_4:15756708-15756727 None:intergenic 25.0%
!!! TATTTTCATTTGGGTTTATG+AGG + chr7_4:15756709-15756728 Msa1141970:CDS 25.0%
!!! ATTTTCATTTGGGTTTATGA+GGG + chr7_4:15756710-15756729 Msa1141970:CDS 25.0%
!! ATTGCAAAGCAAACTTTTAT+CGG - chr7_4:15756812-15756831 None:intergenic 25.0%
! ATGATTATCTTTACAATGTG+AGG + chr7_4:15757020-15757039 Msa1141970:CDS 25.0%
! ATCAATTCTGCAATGATAAA+GGG + chr7_4:15757100-15757119 Msa1141970:CDS 25.0%
GTGATAATCCTTAGTGATTA+AGG + chr7_4:15753664-15753683 Msa1141970:five_prime_UTR 30.0%
! GAGAAGAAAAAGGGTTTTTA+CGG + chr7_4:15753740-15753759 Msa1141970:five_prime_UTR 30.0%
! ACCTTACTGTGAAGTAATTT+TGG + chr7_4:15753779-15753798 Msa1141970:five_prime_UTR 30.0%
! CCTTACTGTGAAGTAATTTT+GGG + chr7_4:15753780-15753799 Msa1141970:five_prime_UTR 30.0%
! CTTACTGTGAAGTAATTTTG+GGG + chr7_4:15753781-15753800 Msa1141970:five_prime_UTR 30.0%
TTGGTGAAATTGAATTCAAG+AGG + chr7_4:15753804-15753823 Msa1141970:five_prime_UTR 30.0%
!! TAAAGCATTGCAAATCAACA+AGG + chr7_4:15753833-15753852 Msa1141970:five_prime_UTR 30.0%
!! AAAGCATTGCAAATCAACAA+GGG + chr7_4:15753834-15753853 Msa1141970:five_prime_UTR 30.0%
!!! CTAACTATTTTCTAGGGTTT+AGG + chr7_4:15754043-15754062 Msa1141970:intron 30.0%
TCTAGTCTCAATTGTCTTAT+AGG - chr7_4:15754243-15754262 None:intergenic 30.0%
GTGTAAAAAGGTTGAATGAT+TGG - chr7_4:15754299-15754318 None:intergenic 30.0%
AACAAGTAGTAGAATAGCTT+CGG - chr7_4:15754583-15754602 None:intergenic 30.0%
AAAAGATTATCGTATCCACA+TGG - chr7_4:15754655-15754674 None:intergenic 30.0%
!! GAGTACAAGAAGTATTTGTT+GGG - chr7_4:15754724-15754743 None:intergenic 30.0%
!! TGAGTACAAGAAGTATTTGT+TGG - chr7_4:15754725-15754744 None:intergenic 30.0%
AAATACTTCTTGTACTCACT+CGG + chr7_4:15754727-15754746 Msa1141970:intron 30.0%
AATAGTAGTCACATTGAAGA+AGG + chr7_4:15754881-15754900 Msa1141970:intron 30.0%
ACGATGGCAAAAAAATATGA+GGG + chr7_4:15755160-15755179 Msa1141970:exon 30.0%
TAAATTACCAAAGACAGTGT+TGG - chr7_4:15755371-15755390 None:intergenic 30.0%
AAAGTAAACAAGCCCTAATA+TGG - chr7_4:15755494-15755513 None:intergenic 30.0%
!!! AATTTTTTGCAGATGCAAAG+AGG + chr7_4:15755586-15755605 Msa1141970:intron 30.0%
TTGTAGTTCACAAGAATTGT+CGG - chr7_4:15755699-15755718 None:intergenic 30.0%
ACAATTCTTGTGAACTACAA+GGG + chr7_4:15755699-15755718 Msa1141970:CDS 30.0%
TGTGAATCATTGAAATAAGC+AGG - chr7_4:15755837-15755856 None:intergenic 30.0%
AAATAAGGTCTTTGATGTCA+AGG + chr7_4:15756040-15756059 Msa1141970:CDS 30.0%
! TGAAGACTTTGATAACAGAA+TGG + chr7_4:15756091-15756110 Msa1141970:CDS 30.0%
AAGAACAAAGAGGATATTAG+TGG + chr7_4:15756143-15756162 Msa1141970:CDS 30.0%
AGAACAAAGAGGATATTAGT+GGG + chr7_4:15756144-15756163 Msa1141970:CDS 30.0%
TACCTTGATATATAGCATCT+AGG - chr7_4:15756253-15756272 None:intergenic 30.0%
! ACTTTTGTTCATCAATCACT+CGG + chr7_4:15756276-15756295 Msa1141970:CDS 30.0%
CATATTCAATTGCTCAAACT+TGG - chr7_4:15756303-15756322 None:intergenic 30.0%
CAAGTTTGAGCAATTGAATA+TGG + chr7_4:15756301-15756320 Msa1141970:CDS 30.0%
!!! CTATTGCAAGACTTTTTCAA+GGG + chr7_4:15756446-15756465 Msa1141970:CDS 30.0%
! ACCTATCCAGTATTTTCATT+TGG + chr7_4:15756699-15756718 Msa1141970:CDS 30.0%
! CCTATCCAGTATTTTCATTT+GGG + chr7_4:15756700-15756719 Msa1141970:CDS 30.0%
AATATTAAATGTCTCTGCAG+TGG + chr7_4:15756844-15756863 Msa1141970:CDS 30.0%
CAATGTGAGGAAAATAATGA+AGG + chr7_4:15757033-15757052 Msa1141970:CDS 30.0%
TTGATCTTCACTTTGTCTAA+AGG - chr7_4:15757085-15757104 None:intergenic 30.0%
GATCAATTCTGCAATGATAA+AGG + chr7_4:15757099-15757118 Msa1141970:CDS 30.0%
TCAATTCTGCAATGATAAAG+GGG + chr7_4:15757101-15757120 Msa1141970:CDS 30.0%
GCTATGAACAAGATCAATAA+AGG + chr7_4:15757208-15757227 Msa1141970:CDS 30.0%
! AATGTTGAAGCTGCTTATTT+TGG + chr7_4:15757303-15757322 Msa1141970:three_prime_UTR 30.0%
TCTCATGTGATGTAGTTTAG+CGG - chr7_4:15753562-15753581 None:intergenic 35.0%
ACATCACATGAGAAGAGAAA+AGG + chr7_4:15753569-15753588 Msa1141970:five_prime_UTR 35.0%
AAGCATTCCCTTAATCACTA+AGG - chr7_4:15753675-15753694 None:intergenic 35.0%
CCCAAAATTACTTCACAGTA+AGG - chr7_4:15753783-15753802 None:intergenic 35.0%
!!! ACTATTTTCTAGGGTTTAGG+TGG + chr7_4:15754046-15754065 Msa1141970:intron 35.0%
ATTAATCGCGAATGACCAAA+CGG + chr7_4:15754385-15754404 Msa1141970:intron 35.0%
GTAAATCAACAAAGAGAGAG+AGG - chr7_4:15754514-15754533 None:intergenic 35.0%
! TACTAACATCGGTTGTTTGA+AGG - chr7_4:15754832-15754851 None:intergenic 35.0%
CACGATGGCAAAAAAATATG+AGG + chr7_4:15755159-15755178 Msa1141970:exon 35.0%
AAATATGAGGGAGTTGCAAT+CGG + chr7_4:15755172-15755191 Msa1141970:CDS 35.0%
TTAGTGAAAGCAACACAAGA+AGG - chr7_4:15755295-15755314 None:intergenic 35.0%
TTGCTTTCACTAATTCCCAA+AGG + chr7_4:15755302-15755321 Msa1141970:CDS 35.0%
! GTTTGAAGAAGCCTGATTTT+TGG - chr7_4:15755344-15755363 None:intergenic 35.0%
ATGCAAAGAGGTTAATTGGA+AGG + chr7_4:15755598-15755617 Msa1141970:CDS 35.0%
CAGTAGATCATTCTGAACAA+TGG - chr7_4:15755637-15755656 None:intergenic 35.0%
TTCAGAATGATCTACTGTTG+TGG + chr7_4:15755640-15755659 Msa1141970:CDS 35.0%
GACAATTCTTGTGAACTACA+AGG + chr7_4:15755698-15755717 Msa1141970:CDS 35.0%
GTAATCACTGCATTCTTAAC+AGG - chr7_4:15755810-15755829 None:intergenic 35.0%
AATATCACCTGCATCTTTAG+TGG - chr7_4:15755868-15755887 None:intergenic 35.0%
!! CACAATTAGCTCTCTTTTGA+AGG - chr7_4:15755950-15755969 None:intergenic 35.0%
AATGGTGAATCACTTTGTCA+AGG + chr7_4:15756109-15756128 Msa1141970:CDS 35.0%
ACTTTGTCAAGGAGTTTAAG+AGG + chr7_4:15756120-15756139 Msa1141970:CDS 35.0%
GTTTAAGAGGAAGAACAAAG+AGG + chr7_4:15756133-15756152 Msa1141970:CDS 35.0%
TATAGCATCTAGGTCAATTG+TGG - chr7_4:15756243-15756262 None:intergenic 35.0%
GACCTAGATGCTATATATCA+AGG + chr7_4:15756248-15756267 Msa1141970:CDS 35.0%
! CTTTTGTTCATCAATCACTC+GGG + chr7_4:15756277-15756296 Msa1141970:CDS 35.0%
! GGATCTCTTTGAAAAGTGTA+TGG + chr7_4:15756322-15756341 Msa1141970:CDS 35.0%
!!! GCTATTGCAAGACTTTTTCA+AGG + chr7_4:15756445-15756464 Msa1141970:CDS 35.0%
ACATCTTGCAGTACCAAATT+TGG - chr7_4:15756566-15756585 None:intergenic 35.0%
TCTCTAGGTAAGGCAATAAA+AGG + chr7_4:15756596-15756615 Msa1141970:CDS 35.0%
GGCAATAAAAGGAGATATCA+TGG + chr7_4:15756607-15756626 Msa1141970:CDS 35.0%
TATTCTCTTGTCTTCTTGAC+AGG - chr7_4:15756662-15756681 None:intergenic 35.0%
CCCAAATGAAAATACTGGAT+AGG - chr7_4:15756703-15756722 None:intergenic 35.0%
! CAAAGCAAACTTTTATCGGA+AGG - chr7_4:15756808-15756827 None:intergenic 35.0%
AAAAGGAAGACTATCAAGAG+AGG + chr7_4:15756910-15756929 Msa1141970:CDS 35.0%
AGACTATCAAGAGAGGAAAT+TGG + chr7_4:15756917-15756936 Msa1141970:CDS 35.0%
GACTATCAAGAGAGGAAATT+GGG + chr7_4:15756918-15756937 Msa1141970:CDS 35.0%
AAGGGGAAAAGTTTGATTGA+TGG + chr7_4:15757118-15757137 Msa1141970:CDS 35.0%
CAATAAAGGTTACTCTGATG+AGG + chr7_4:15757222-15757241 Msa1141970:CDS 35.0%
TGAGAAGAGAAAAGGAACAG+AGG + chr7_4:15753577-15753596 Msa1141970:five_prime_UTR 40.0%
ACGATAAAGGAGAGACACAA+AGG + chr7_4:15753638-15753657 Msa1141970:five_prime_UTR 40.0%
CGATAAAGGAGAGACACAAA+GGG + chr7_4:15753639-15753658 Msa1141970:five_prime_UTR 40.0%
!!! CTGTGAAGTAATTTTGGGGT+TGG + chr7_4:15753785-15753804 Msa1141970:five_prime_UTR 40.0%
AACAAAGAGAGAGAGGTCTA+GGG - chr7_4:15754507-15754526 None:intergenic 40.0%
GTAAAAAGTAACGACGAGGT+AGG - chr7_4:15754553-15754572 None:intergenic 40.0%
CCAAGTAAAAAGTAACGACG+AGG - chr7_4:15754557-15754576 None:intergenic 40.0%
!!! CCTCGTCGTTACTTTTTACT+TGG + chr7_4:15754554-15754573 Msa1141970:intron 40.0%
CTTCAATGTGATAGCTAGTG+TGG - chr7_4:15754929-15754948 None:intergenic 40.0%
ACTAGCTATCACATTGAAGC+AGG + chr7_4:15754930-15754949 Msa1141970:intron 40.0%
CATTGAAGCAGGAAAAGTCA+TGG + chr7_4:15754941-15754960 Msa1141970:intron 40.0%
GAAAAGTCATGGCTTCTGAT+AGG + chr7_4:15754952-15754971 Msa1141970:intron 40.0%
TTCATTCACTTGAAGCACGA+TGG + chr7_4:15755144-15755163 Msa1141970:exon 40.0%
ACTAATTCCCAAAGGCTGAT+TGG + chr7_4:15755310-15755329 Msa1141970:CDS 40.0%
!! TACCAAAGACAGTGTTGGTT+GGG - chr7_4:15755366-15755385 None:intergenic 40.0%
!! TTACCAAAGACAGTGTTGGT+TGG - chr7_4:15755367-15755386 None:intergenic 40.0%
GCAGATGCAAAGAGGTTAAT+TGG + chr7_4:15755594-15755613 Msa1141970:intron 40.0%
!!! AGAGATTGCAGAGGCATTTT+TGG + chr7_4:15755779-15755798 Msa1141970:CDS 40.0%
AAAGATGCAGGTGATATTGC+TGG + chr7_4:15755870-15755889 Msa1141970:CDS 40.0%
! TTGCTGGTCTCAATGTAATG+CGG + chr7_4:15755886-15755905 Msa1141970:CDS 40.0%
GATAATAAACGAACCGACTG+CGG + chr7_4:15755908-15755927 Msa1141970:CDS 40.0%
TTTATCTTTGACATTGGCGG+TGG + chr7_4:15755987-15756006 Msa1141970:CDS 40.0%
TTGTCTTGCTGATGCTAAGA+TGG + chr7_4:15756358-15756377 Msa1141970:CDS 40.0%
GTAGATGACATTGTCCTTGT+TGG + chr7_4:15756392-15756411 Msa1141970:CDS 40.0%
TGCAATAGCTGCTTCACTTT+GGG - chr7_4:15756434-15756453 None:intergenic 40.0%
TTGCAATAGCTGCTTCACTT+TGG - chr7_4:15756435-15756454 None:intergenic 40.0%
!!! GCAAGACTTTTTCAAGGGAA+AGG + chr7_4:15756451-15756470 Msa1141970:CDS 40.0%
TTGCCTTACCTAGAGACAAT+GGG - chr7_4:15756592-15756611 None:intergenic 40.0%
ATTGCCTTACCTAGAGACAA+TGG - chr7_4:15756593-15756612 None:intergenic 40.0%
AACAGTGAGAACAACTTCCT+CGG + chr7_4:15756746-15756765 Msa1141970:CDS 40.0%
TGCTTTGCAATAGATGCTGA+TGG + chr7_4:15756821-15756840 Msa1141970:CDS 40.0%
TCTGCAGTGGAAGAAAAAAG+TGG + chr7_4:15756857-15756876 Msa1141970:CDS 40.0%
GGAAATTGGGAGAATGATTC+AGG + chr7_4:15756931-15756950 Msa1141970:CDS 40.0%
TCAGGAAGCTGACAATTTCA+AGG + chr7_4:15756949-15756968 Msa1141970:CDS 40.0%
AGTCAAAGCAGTCAATGCTT+TGG + chr7_4:15756997-15757016 Msa1141970:CDS 40.0%
! TTTGATTGATGGCAACCAGA+AGG + chr7_4:15757129-15757148 Msa1141970:CDS 40.0%
ATACAGACGTATCTTCCTTC+TGG - chr7_4:15757147-15757166 None:intergenic 40.0%
CTCTGATGAGGAAAGTGATT+CGG + chr7_4:15757234-15757253 Msa1141970:CDS 40.0%
TCTGATGAGGAAAGTGATTC+GGG + chr7_4:15757235-15757254 Msa1141970:CDS 40.0%
TAAAAATTCAGAGTCCGTCG+AGG + chr7_4:15757478-15757497 Msa1141970:three_prime_UTR 40.0%
TTACTAAAGCAAGACCTCGA+CGG - chr7_4:15757495-15757514 None:intergenic 40.0%
TAAAGGAGAGACACAAAGGG+CGG + chr7_4:15753642-15753661 Msa1141970:five_prime_UTR 45.0%
ACACACTACACACACTAGAG+AGG + chr7_4:15753875-15753894 Msa1141970:five_prime_UTR 45.0%
ACACACTAGAGAGGAGAGAA+GGG + chr7_4:15753884-15753903 Msa1141970:five_prime_UTR 45.0%
TCAGAGAGAAGAGAAGAGCA+TGG + chr7_4:15753917-15753936 Msa1141970:five_prime_UTR 45.0%
GAGCATGGAGTAGAGATTGA+AGG + chr7_4:15753932-15753951 Msa1141970:five_prime_UTR 45.0%
CAACAAAGAGAGAGAGGTCT+AGG - chr7_4:15754508-15754527 None:intergenic 45.0%
GTTGCAATCGGAATTGACCT+TGG + chr7_4:15755184-15755203 Msa1141970:CDS 45.0%
CTTACTCGTGTGTTGGAGTA+TGG + chr7_4:15755212-15755231 Msa1141970:CDS 45.0%
AGCATCACCAATCAGCCTTT+GGG - chr7_4:15755320-15755339 None:intergenic 45.0%
! TGGTGATGCTGCCAAAAATC+AGG + chr7_4:15755330-15755349 Msa1141970:CDS 45.0%
AACCCAACCAACACTGTCTT+TGG + chr7_4:15755361-15755380 Msa1141970:CDS 45.0%
TCTACTGTTGTGGCCCTTTA+AGG + chr7_4:15755650-15755669 Msa1141970:CDS 45.0%
!! TGGCCCTTTAAGGTCATATC+CGG + chr7_4:15755660-15755679 Msa1141970:CDS 45.0%
GCACCGGATATGACCTTAAA+GGG - chr7_4:15755666-15755685 None:intergenic 45.0%
! AGCACCGGATATGACCTTAA+AGG - chr7_4:15755667-15755686 None:intergenic 45.0%
TCTTGTGAACTACAAGGGTG+AGG + chr7_4:15755704-15755723 Msa1141970:CDS 45.0%
CAATCTCTTGCATCTGTGAG+AGG - chr7_4:15755767-15755786 None:intergenic 45.0%
ACAGATGCAAGAGATTGCAG+AGG + chr7_4:15755770-15755789 Msa1141970:CDS 45.0%
TATCAAAGTCTTCACCGCCT+AGG - chr7_4:15756085-15756104 None:intergenic 45.0%
! TCAACCTCCTCAAGGCTTTT+GGG - chr7_4:15756172-15756191 None:intergenic 45.0%
GACACTTTCATACGACACTG+AGG + chr7_4:15756217-15756236 Msa1141970:CDS 45.0%
TTGCTGATGCTAAGATGGAC+AGG + chr7_4:15756363-15756382 Msa1141970:CDS 45.0%
TGCTGATGCTAAGATGGACA+GGG + chr7_4:15756364-15756383 Msa1141970:CDS 45.0%
GATGACATTGTCCTTGTTGG+TGG + chr7_4:15756395-15756414 Msa1141970:CDS 45.0%
!! CAAAAGCATCAACCCTGATG+AGG + chr7_4:15756481-15756500 Msa1141970:CDS 45.0%
CATAAGCAACAGCCTCATCA+GGG - chr7_4:15756496-15756515 None:intergenic 45.0%
GATGTTACCCCATTGTCTCT+AGG + chr7_4:15756581-15756600 Msa1141970:CDS 45.0%
TACCCCATTGTCTCTAGGTA+AGG + chr7_4:15756586-15756605 Msa1141970:CDS 45.0%
TGCCTTACCTAGAGACAATG+GGG - chr7_4:15756591-15756610 None:intergenic 45.0%
TCATGGATGTTGTGATTCCC+AGG + chr7_4:15756624-15756643 Msa1141970:CDS 45.0%
ACAGGAATAGACGAGTTCCT+GGG - chr7_4:15756644-15756663 None:intergenic 45.0%
TTTGTCTAAAGGAGCGAGCT+TGG - chr7_4:15757074-15757093 None:intergenic 45.0%
CACACACTAGAGAGGAGAGA+AGG + chr7_4:15753883-15753902 Msa1141970:five_prime_UTR 50.0%
CACACTAGAGAGGAGAGAAG+GGG + chr7_4:15753885-15753904 Msa1141970:five_prime_UTR 50.0%
ATCGTACTGCAGCTAACTGG+TGG + chr7_4:15754216-15754235 Msa1141970:intron 50.0%
CAGCATCACCAATCAGCCTT+TGG - chr7_4:15755321-15755340 None:intergenic 50.0%
!! TGTCGGTTTGTCATCAGCAC+CGG - chr7_4:15755682-15755701 None:intergenic 50.0%
CGAAGAGCCACTAAAGATGC+AGG + chr7_4:15755858-15755877 Msa1141970:CDS 50.0%
AATAAACGAACCGACTGCGG+CGG + chr7_4:15755911-15755930 Msa1141970:CDS 50.0%
TTTGATGTCAAGGCCACTGC+TGG + chr7_4:15756050-15756069 Msa1141970:CDS 50.0%
! CTCAACCTCCTCAAGGCTTT+TGG - chr7_4:15756173-15756192 None:intergenic 50.0%
GTTGAGAACTGCCTGTGAGA+GGG + chr7_4:15756187-15756206 Msa1141970:CDS 50.0%
! TGTCCTTTTTGCCCTCTCAC+AGG - chr7_4:15756201-15756220 None:intergenic 50.0%
GCTGATGCTAAGATGGACAG+GGG + chr7_4:15756365-15756384 Msa1141970:CDS 50.0%
!! TCCTTGTTGGTGGCTCTTCT+AGG + chr7_4:15756405-15756424 Msa1141970:CDS 50.0%
TCCTAGAAGAGCCACCAACA+AGG - chr7_4:15756409-15756428 None:intergenic 50.0%
CCATAAGCAACAGCCTCATC+AGG - chr7_4:15756497-15756516 None:intergenic 50.0%
! CCTGATGAGGCTGTTGCTTA+TGG + chr7_4:15756494-15756513 Msa1141970:CDS 50.0%
TGCTTATGGTGCAGCTGTTC+AGG + chr7_4:15756508-15756527 Msa1141970:CDS 50.0%
GACAGGAATAGACGAGTTCC+TGG - chr7_4:15756645-15756664 None:intergenic 50.0%
TAAAGGAGCGAGCTTGGAAC+TGG - chr7_4:15757068-15757087 None:intergenic 50.0%
GCGATCGTACTGCAGCTAAC+TGG + chr7_4:15754213-15754232 Msa1141970:intron 55.0%
! GAGAGAGAGGTCTAGGGTTG+CGG - chr7_4:15754501-15754520 None:intergenic 55.0%
CACACGAGTAAGTCGTGCCA+AGG - chr7_4:15755204-15755223 None:intergenic 55.0%
GGCACGACTTACTCGTGTGT+TGG + chr7_4:15755205-15755224 Msa1141970:CDS 55.0%
GCATGAGCAGAACGATCGTG+TGG + chr7_4:15755234-15755253 Msa1141970:CDS 55.0%
TAGGTGAGTGTCTCCAGCAG+TGG - chr7_4:15756066-15756085 None:intergenic 55.0%
ACTGCTGGAGACACTCACCT+AGG + chr7_4:15756065-15756084 Msa1141970:CDS 55.0%
GTGGGAACCCAAAAGCCTTG+AGG + chr7_4:15756162-15756181 Msa1141970:CDS 55.0%
GGAACCCAAAAGCCTTGAGG+AGG + chr7_4:15756165-15756184 Msa1141970:CDS 55.0%
GGCAGTTCTCAACCTCCTCA+AGG - chr7_4:15756180-15756199 None:intergenic 55.0%
GGTTGAGAACTGCCTGTGAG+AGG + chr7_4:15756186-15756205 Msa1141970:CDS 55.0%
CTGCCTGTGAGAGGGCAAAA+AGG + chr7_4:15756195-15756214 Msa1141970:CDS 55.0%
! CAGGCTGCTTTGCTTTGCGA+AGG + chr7_4:15756527-15756546 Msa1141970:CDS 55.0%
! CCTCGGTTTGTTTGAGCTCC+CGG + chr7_4:15756763-15756782 Msa1141970:CDS 55.0%
! ACTTTTATCGGAAGGCCGCG+AGG - chr7_4:15756800-15756819 None:intergenic 55.0%
TATGCAAGAGCCGCCGCAGT+CGG - chr7_4:15755924-15755943 None:intergenic 60.0%
ACTGCGGCGGCTCTTGCATA+TGG + chr7_4:15755924-15755943 Msa1141970:CDS 60.0%
GCTGGAGACACTCACCTAGG+CGG + chr7_4:15756068-15756087 Msa1141970:CDS 60.0%
CCGGGAGCTCAAACAAACCG+AGG - chr7_4:15756766-15756785 None:intergenic 60.0%
CGCGAGGTGCACGTGAAACC+GGG - chr7_4:15756784-15756803 None:intergenic 65.0%
CCGCGAGGTGCACGTGAAAC+CGG - chr7_4:15756785-15756804 None:intergenic 65.0%
CCGGTTTCACGTGCACCTCG+CGG + chr7_4:15756782-15756801 Msa1141970:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 15753555 15757515 15753555 ID=Msa1141970;Name=Msa1141970
chr7_4 mRNA 15753555 15757515 15753555 ID=Msa1141970-mRNA-1;Parent=Msa1141970;Name=Msa1141970-mRNA-1;_AED=0.15;_eAED=0.15;_QI=508|1|1|1|0.5|0.33|3|248|629
chr7_4 exon 15753555 15753953 15753555 ID=Msa1141970-mRNA-1:exon:3584;Parent=Msa1141970-mRNA-1
chr7_4 exon 15755054 15755382 15755054 ID=Msa1141970-mRNA-1:exon:3585;Parent=Msa1141970-mRNA-1
chr7_4 exon 15755598 15757515 15755598 ID=Msa1141970-mRNA-1:exon:3586;Parent=Msa1141970-mRNA-1
chr7_4 five_prime_UTR 15753555 15753953 15753555 ID=Msa1141970-mRNA-1:five_prime_utr;Parent=Msa1141970-mRNA-1
chr7_4 five_prime_UTR 15755054 15755162 15755054 ID=Msa1141970-mRNA-1:five_prime_utr;Parent=Msa1141970-mRNA-1
chr7_4 CDS 15755163 15755382 15755163 ID=Msa1141970-mRNA-1:cds;Parent=Msa1141970-mRNA-1
chr7_4 CDS 15755598 15757267 15755598 ID=Msa1141970-mRNA-1:cds;Parent=Msa1141970-mRNA-1
chr7_4 three_prime_UTR 15757268 15757515 15757268 ID=Msa1141970-mRNA-1:three_prime_utr;Parent=Msa1141970-mRNA-1
Gene Sequence

>Msa1141970

ATGGCAAAAAAATATGAGGGAGTTGCAATCGGAATTGACCTTGGCACGACTTACTCGTGTGTTGGAGTATGGCATGAGCAGAACGATCGTGTGGAAATTATTCACAATGATCAAGGAAACAAAACAACACCTTCTTGTGTTGCTTTCACTAATTCCCAAAGGCTGATTGGTGATGCTGCCAAAAATCAGGCTTCTTCAAACCCAACCAACACTGTCTTTGATGCAAAGAGGTTAATTGGAAGGAAATATAGTGATTCCATTGTTCAGAATGATCTACTGTTGTGGCCCTTTAAGGTCATATCCGGTGCTGATGACAAACCGACAATTCTTGTGAACTACAAGGGTGAGGAAAAGCACTTTGTTGCTGAAGAAATATCATCTGTGATCCTCTCACAGATGCAAGAGATTGCAGAGGCATTTTTGGAGTCACCTGTTAAGAATGCAGTGATTACTGTACCTGCTTATTTCAATGATTCACAACGAAGAGCCACTAAAGATGCAGGTGATATTGCTGGTCTCAATGTAATGCGGATAATAAACGAACCGACTGCGGCGGCTCTTGCATATGGCCTTCAAAAGAGAGCTAATTGTGTTGATAAGAGAAATATTTTTATCTTTGACATTGGCGGTGGAACTTTTGATGTGTCTATTCTTACAATAAAAAATAAGGTCTTTGATGTCAAGGCCACTGCTGGAGACACTCACCTAGGCGGTGAAGACTTTGATAACAGAATGGTGAATCACTTTGTCAAGGAGTTTAAGAGGAAGAACAAAGAGGATATTAGTGGGAACCCAAAAGCCTTGAGGAGGTTGAGAACTGCCTGTGAGAGGGCAAAAAGGACACTTTCATACGACACTGAGGCCACAATTGACCTAGATGCTATATATCAAGGTATTGACTTTTGTTCATCAATCACTCGGGCCAAGTTTGAGCAATTGAATATGGATCTCTTTGAAAAGTGTATGGATACTGTTAATAGTTGTCTTGCTGATGCTAAGATGGACAGGGGTAGTGTAGATGACATTGTCCTTGTTGGTGGCTCTTCTAGGATTCCCAAAGTGAAGCAGCTATTGCAAGACTTTTTCAAGGGAAAGGAATTGTGCAAAAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTTCAGGCTGCTTTGCTTTGCGAAGGCATTAAGAATGTTCCAAATTTGGTACTGCAAGATGTTACCCCATTGTCTCTAGGTAAGGCAATAAAAGGAGATATCATGGATGTTGTGATTCCCAGGAACTCGTCTATTCCTGTCAAGAAGACAAGAGAATATGTTACAACTGAAGATAACCTATCCAGTATTTTCATTTGGGTTTATGAGGGTGAAAGATCAATGAACAGTGAGAACAACTTCCTCGGTTTGTTTGAGCTCCCGGTTTCACGTGCACCTCGCGGCCTTCCGATAAAAGTTTGCTTTGCAATAGATGCTGATGGAATATTAAATGTCTCTGCAGTGGAAGAAAAAAGTGGTAATAAGAAAGACATTACAATTATGAATGAAAAAGGAAGACTATCAAGAGAGGAAATTGGGAGAATGATTCAGGAAGCTGACAATTTCAAGGCTCAAGATATGATGTTCAGAAAGAAAGTCAAAGCAGTCAATGCTTTGGATGATTATCTTTACAATGTGAGGAAAATAATGAAGGATAATATGGCCAGTTCCAAGCTCGCTCCTTTAGACAAAGTGAAGATCAATTCTGCAATGATAAAGGGGAAAAGTTTGATTGATGGCAACCAGAAGGAAGATACGTCTGTATTTGTAGAATTTTTGAAGGAGCTTGAGAGCATCTCTGAGTCTGCTATGAACAAGATCAATAAAGGTTACTCTGATGAGGAAAGTGATTCGGGCTCTGATTGA
Protein sequence

>Msa1141970

MAKKYEGVAIGIDLGTTYSCVGVWHEQNDRVEIIHNDQGNKTTPSCVAFTNSQRLIGDAAKNQASSNPTNTVFDAKRLIGRKYSDSIVQNDLLLWPFKVISGADDKPTILVNYKGEEKHFVAEEISSVILSQMQEIAEAFLESPVKNAVITVPAYFNDSQRRATKDAGDIAGLNVMRIINEPTAAALAYGLQKRANCVDKRNIFIFDIGGGTFDVSILTIKNKVFDVKATAGDTHLGGEDFDNRMVNHFVKEFKRKNKEDISGNPKALRRLRTACERAKRTLSYDTEATIDLDAIYQGIDFCSSITRAKFEQLNMDLFEKCMDTVNSCLADAKMDRGSVDDIVLVGGSSRIPKVKQLLQDFFKGKELCKSINPDEAVAYGAAVQAALLCEGIKNVPNLVLQDVTPLSLGKAIKGDIMDVVIPRNSSIPVKKTREYVTTEDNLSSIFIWVYEGERSMNSENNFLGLFELPVSRAPRGLPIKVCFAIDADGILNVSAVEEKSGNKKDITIMNEKGRLSREEIGRMIQEADNFKAQDMMFRKKVKAVNALDDYLYNVRKIMKDNMASSKLAPLDKVKINSAMIKGKSLIDGNQKEDTSVFVEFLKELESISESAMNKINKGYSDEESDSGSD*