AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1059060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 40 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATATATGTCCAGAATTT+TGG 0.147464 7_2:+44611667 Msa1059060:three_prime_UTR
CATCAACACTTTAACATTCT+TGG 0.221440 7_2:-44611944 None:intergenic
TACTTTGAAAACCAAAATTC+TGG 0.271661 7_2:-44611678 None:intergenic
GAATATGTGAAAGAATTTAT+AGG 0.272111 7_2:-44611754 None:intergenic
CTCAAAGTATATTCCATTCT+AGG 0.283413 7_2:-44611635 None:intergenic
CGAAATGCTCCTACCCTTGA+TGG 0.290315 7_2:-44612122 None:intergenic
CCTTAGATTCATTATTGTAT+TGG 0.309848 7_2:+44611718 Msa1059060:three_prime_UTR
CCAATACAATAATGAATCTA+AGG 0.313428 7_2:-44611718 None:intergenic
ATAAATGGCCTCTGTTGTAT+TGG 0.355749 7_2:+44610787 None:intergenic
ACTTAACACAAATGATTCTC+TGG 0.393595 7_2:-44611832 None:intergenic
TATTCATGAAAAGAATTTCA+AGG 0.422314 7_2:+44611866 Msa1059060:three_prime_UTR
AAATTGGTACCTGTCATGTT+TGG 0.444000 7_2:-44611309 None:intergenic
ATATACTTTGAGCATAGCCT+TGG 0.480996 7_2:+44611646 Msa1059060:three_prime_UTR
TGTGGTTGTGTGAATGAAAT+CGG 0.486841 7_2:+44612052 Msa1059060:three_prime_UTR
AGCATTGACAACCGCATTTG+TGG 0.487180 7_2:+44611267 Msa1059060:CDS
CTTTAACATTCTTGGATCCA+AGG 0.492851 7_2:-44611936 None:intergenic
GCCCATAACAGCTATTGAAA+AGG 0.501298 7_2:+44611966 Msa1059060:three_prime_UTR
GAGTTAAGAATGTCAGCAAA+TGG 0.508624 7_2:-44610818 None:intergenic
GTTTATCAATAAAACCATCA+AGG 0.525145 7_2:+44612108 Msa1059060:three_prime_UTR
TGAGCTGATGACATCTCCAT+TGG 0.528589 7_2:+44611599 Msa1059060:three_prime_UTR
AGGGTTAGCTGAGCCTAGAA+TGG 0.531169 7_2:+44611622 Msa1059060:three_prime_UTR
GCTGATGACATCTCCATTGG+AGG 0.545535 7_2:+44611602 Msa1059060:three_prime_UTR
AATTCTGGACATATATTCCA+AGG 0.548611 7_2:-44611663 None:intergenic
CTTTCCATTCCAAACATGAC+AGG 0.566892 7_2:+44611300 Msa1059060:CDS
AGGCTCAGCTAACCCTCCAA+TGG 0.569211 7_2:-44611615 None:intergenic
TCAATAAAACCATCAAGGGT+AGG 0.573610 7_2:+44612113 Msa1059060:three_prime_UTR
TTTATCAATAAAACCATCAA+GGG 0.578767 7_2:+44612109 Msa1059060:three_prime_UTR
GGTACCTGTCATGTTTGGAA+TGG 0.579812 7_2:-44611304 None:intergenic
TGGTGATGCCAGATAAATGC+TGG 0.584761 7_2:+44611222 Msa1059060:intron
TGCCAGATAAATGCTGGAAG+AGG 0.585925 7_2:+44611228 Msa1059060:intron
CCAGAGAGGAAATTAAACCT+TGG 0.599380 7_2:+44611919 Msa1059060:intron
TGAAATCGGTGGTATTTGCA+TGG 0.604800 7_2:+44612066 Msa1059060:three_prime_UTR
GCATGGATAAGAGTAATATG+AGG 0.606077 7_2:+44612083 Msa1059060:three_prime_UTR
CTGTCATGTTTGGAATGGAA+AGG 0.607349 7_2:-44611299 None:intergenic
AAGTTTGGTTATTTGAGATG+TGG 0.619666 7_2:+44612034 Msa1059060:three_prime_UTR
CTGATGACATCTCCATTGGA+GGG 0.632134 7_2:+44611603 Msa1059060:three_prime_UTR
TAACACAAATGATTCTCTGG+TGG 0.664569 7_2:-44611829 None:intergenic
GGAGAAACTCACCACAAATG+CGG 0.686116 7_2:-44611278 None:intergenic
AGATGAAGCCAATACAACAG+AGG 0.729885 7_2:-44610795 None:intergenic
GGTTGTGTGAATGAAATCGG+TGG 0.776842 7_2:+44612055 Msa1059060:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAGAAAAAGAAAA+GGG - chr7_2:44610935-44610954 None:intergenic 15.0%
!!! ATAAGTATCTAAAATAAAAG+TGG - chr7_2:44611512-44611531 None:intergenic 15.0%
!! AAAGAAAAAGAAAAAGAAAA+GGG - chr7_2:44610935-44610954 None:intergenic 15.0%
!!! ATAAGTATCTAAAATAAAAG+TGG - chr7_2:44611512-44611531 None:intergenic 15.0%
!! GAAAGAAAAAGAAAAAGAAA+AGG - chr7_2:44610936-44610955 None:intergenic 20.0%
!!! AAAAAAATTGCTTTGAAGAA+AGG - chr7_2:44611358-44611377 None:intergenic 20.0%
!!! AAGTTTTCTTCTTTCTTTAT+TGG - chr7_2:44611392-44611411 None:intergenic 20.0%
!! GAATATGTGAAAGAATTTAT+AGG - chr7_2:44611757-44611776 None:intergenic 20.0%
!! TATTCATGAAAAGAATTTCA+AGG + chr7_2:44611866-44611885 Msa1059060:three_prime_UTR 20.0%
!! TTTATCAATAAAACCATCAA+GGG + chr7_2:44612109-44612128 Msa1059060:three_prime_UTR 20.0%
!! GAAAGAAAAAGAAAAAGAAA+AGG - chr7_2:44610936-44610955 None:intergenic 20.0%
!!! AAAAAAATTGCTTTGAAGAA+AGG - chr7_2:44611358-44611377 None:intergenic 20.0%
!!! AAGTTTTCTTCTTTCTTTAT+TGG - chr7_2:44611392-44611411 None:intergenic 20.0%
!! GAATATGTGAAAGAATTTAT+AGG - chr7_2:44611757-44611776 None:intergenic 20.0%
!! TATTCATGAAAAGAATTTCA+AGG + chr7_2:44611866-44611885 Msa1059060:three_prime_UTR 20.0%
!! TTTATCAATAAAACCATCAA+GGG + chr7_2:44612109-44612128 Msa1059060:three_prime_UTR 20.0%
!!! AAAGTGACTAATTTTTGGAA+TGG - chr7_2:44610848-44610867 None:intergenic 25.0%
!! GAGAAAAAGTGACTAATTTT+TGG - chr7_2:44610853-44610872 None:intergenic 25.0%
! CATCTTGAAATTAAAATGCA+TGG - chr7_2:44611135-44611154 None:intergenic 25.0%
!! AGACTATTCTTACTTGATTT+TGG + chr7_2:44611194-44611213 Msa1059060:intron 25.0%
! TTAGTCACTACAATAATTAC+AGG + chr7_2:44611450-44611469 Msa1059060:intron 25.0%
!! TACTTTGAAAACCAAAATTC+TGG - chr7_2:44611681-44611700 None:intergenic 25.0%
!!! GAATTTTGGTTTTCAAAGTA+AGG + chr7_2:44611681-44611700 Msa1059060:three_prime_UTR 25.0%
! CCAATACAATAATGAATCTA+AGG - chr7_2:44611721-44611740 None:intergenic 25.0%
! CCTTAGATTCATTATTGTAT+TGG + chr7_2:44611718-44611737 Msa1059060:three_prime_UTR 25.0%
!!! TCTATGTTTTTAGAAAGAGT+CGG + chr7_2:44611799-44611818 Msa1059060:three_prime_UTR 25.0%
! AAATCAAGCTCAAAAAGATA+AGG + chr7_2:44612011-44612030 Msa1059060:three_prime_UTR 25.0%
! GTTTATCAATAAAACCATCA+AGG + chr7_2:44612108-44612127 Msa1059060:three_prime_UTR 25.0%
!!! AAAGTGACTAATTTTTGGAA+TGG - chr7_2:44610848-44610867 None:intergenic 25.0%
!! GAGAAAAAGTGACTAATTTT+TGG - chr7_2:44610853-44610872 None:intergenic 25.0%
! CATCTTGAAATTAAAATGCA+TGG - chr7_2:44611135-44611154 None:intergenic 25.0%
!! AGACTATTCTTACTTGATTT+TGG + chr7_2:44611194-44611213 Msa1059060:intron 25.0%
! TTAGTCACTACAATAATTAC+AGG + chr7_2:44611450-44611469 Msa1059060:intron 25.0%
!! TACTTTGAAAACCAAAATTC+TGG - chr7_2:44611681-44611700 None:intergenic 25.0%
!!! GAATTTTGGTTTTCAAAGTA+AGG + chr7_2:44611681-44611700 Msa1059060:three_prime_UTR 25.0%
! CCAATACAATAATGAATCTA+AGG - chr7_2:44611721-44611740 None:intergenic 25.0%
! CCTTAGATTCATTATTGTAT+TGG + chr7_2:44611718-44611737 Msa1059060:three_prime_UTR 25.0%
!!! TCTATGTTTTTAGAAAGAGT+CGG + chr7_2:44611799-44611818 Msa1059060:three_prime_UTR 25.0%
! AAATCAAGCTCAAAAAGATA+AGG + chr7_2:44612011-44612030 Msa1059060:three_prime_UTR 25.0%
! GTTTATCAATAAAACCATCA+AGG + chr7_2:44612108-44612127 Msa1059060:three_prime_UTR 25.0%
TGGATCAGTGAAGAAAAATA+AGG - chr7_2:44610879-44610898 None:intergenic 30.0%
! ATTTTTCTTCACTGATCCAA+AGG + chr7_2:44610880-44610899 Msa1059060:CDS 30.0%
CTAACATTTATGCTTACCTT+TGG - chr7_2:44610899-44610918 None:intergenic 30.0%
GTTGAGTGATAGATTAATCA+TGG - chr7_2:44610976-44610995 None:intergenic 30.0%
TCCTACACAAATCAAAATGA+AGG + chr7_2:44611032-44611051 Msa1059060:intron 30.0%
!!! TCCTTCATTTTGATTTGTGT+AGG - chr7_2:44611036-44611055 None:intergenic 30.0%
ATATTTGAGCAATGTTAGTG+GGG - chr7_2:44611161-44611180 None:intergenic 30.0%
CATATTTGAGCAATGTTAGT+GGG - chr7_2:44611162-44611181 None:intergenic 30.0%
ATGCAGAAGAGATGAAAAAT+TGG - chr7_2:44611328-44611347 None:intergenic 30.0%
AGTTGTTATGTTTATGATCC+AGG + chr7_2:44611547-44611566 Msa1059060:intron 30.0%
CTCAAAGTATATTCCATTCT+AGG - chr7_2:44611638-44611657 None:intergenic 30.0%
AATTCTGGACATATATTCCA+AGG - chr7_2:44611666-44611685 None:intergenic 30.0%
! GGAATATATGTCCAGAATTT+TGG + chr7_2:44611667-44611686 Msa1059060:three_prime_UTR 30.0%
! TGGTTTTCAAAGTAAGGAAA+AGG + chr7_2:44611687-44611706 Msa1059060:three_prime_UTR 30.0%
ACTTAACACAAATGATTCTC+TGG - chr7_2:44611835-44611854 None:intergenic 30.0%
!! CAAGGTTTTGTGTGAATATT+TGG + chr7_2:44611884-44611903 Msa1059060:intron 30.0%
!! TTTTGTGTGAATATTTGGTG+CGG + chr7_2:44611889-44611908 Msa1059060:intron 30.0%
CATCAACACTTTAACATTCT+TGG - chr7_2:44611947-44611966 None:intergenic 30.0%
! TCCTTTTCAATAGCTGTTAT+GGG - chr7_2:44611970-44611989 None:intergenic 30.0%
CTCAAAAAGATAAGGAAGTT+TGG + chr7_2:44612019-44612038 Msa1059060:three_prime_UTR 30.0%
! AAGTTTGGTTATTTGAGATG+TGG + chr7_2:44612034-44612053 Msa1059060:three_prime_UTR 30.0%
TGGATCAGTGAAGAAAAATA+AGG - chr7_2:44610879-44610898 None:intergenic 30.0%
! ATTTTTCTTCACTGATCCAA+AGG + chr7_2:44610880-44610899 Msa1059060:CDS 30.0%
CTAACATTTATGCTTACCTT+TGG - chr7_2:44610899-44610918 None:intergenic 30.0%
GTTGAGTGATAGATTAATCA+TGG - chr7_2:44610976-44610995 None:intergenic 30.0%
TCCTACACAAATCAAAATGA+AGG + chr7_2:44611032-44611051 Msa1059060:intron 30.0%
!!! TCCTTCATTTTGATTTGTGT+AGG - chr7_2:44611036-44611055 None:intergenic 30.0%
ATATTTGAGCAATGTTAGTG+GGG - chr7_2:44611161-44611180 None:intergenic 30.0%
CATATTTGAGCAATGTTAGT+GGG - chr7_2:44611162-44611181 None:intergenic 30.0%
ATGCAGAAGAGATGAAAAAT+TGG - chr7_2:44611328-44611347 None:intergenic 30.0%
AGTTGTTATGTTTATGATCC+AGG + chr7_2:44611547-44611566 Msa1059060:intron 30.0%
CTCAAAGTATATTCCATTCT+AGG - chr7_2:44611638-44611657 None:intergenic 30.0%
AATTCTGGACATATATTCCA+AGG - chr7_2:44611666-44611685 None:intergenic 30.0%
! GGAATATATGTCCAGAATTT+TGG + chr7_2:44611667-44611686 Msa1059060:three_prime_UTR 30.0%
! TGGTTTTCAAAGTAAGGAAA+AGG + chr7_2:44611687-44611706 Msa1059060:three_prime_UTR 30.0%
ACTTAACACAAATGATTCTC+TGG - chr7_2:44611835-44611854 None:intergenic 30.0%
!! CAAGGTTTTGTGTGAATATT+TGG + chr7_2:44611884-44611903 Msa1059060:intron 30.0%
!! TTTTGTGTGAATATTTGGTG+CGG + chr7_2:44611889-44611908 Msa1059060:intron 30.0%
CATCAACACTTTAACATTCT+TGG - chr7_2:44611947-44611966 None:intergenic 30.0%
! TCCTTTTCAATAGCTGTTAT+GGG - chr7_2:44611970-44611989 None:intergenic 30.0%
CTCAAAAAGATAAGGAAGTT+TGG + chr7_2:44612019-44612038 Msa1059060:three_prime_UTR 30.0%
! AAGTTTGGTTATTTGAGATG+TGG + chr7_2:44612034-44612053 Msa1059060:three_prime_UTR 30.0%
GAGTTAAGAATGTCAGCAAA+TGG - chr7_2:44610821-44610840 None:intergenic 35.0%
GCATATTTGAGCAATGTTAG+TGG - chr7_2:44611163-44611182 None:intergenic 35.0%
AAATTGGTACCTGTCATGTT+TGG - chr7_2:44611312-44611331 None:intergenic 35.0%
TTATTGTAGTGACTAACTGC+TGG - chr7_2:44611446-44611465 None:intergenic 35.0%
ATATACTTTGAGCATAGCCT+TGG + chr7_2:44611646-44611665 Msa1059060:three_prime_UTR 35.0%
TAACACAAATGATTCTCTGG+TGG - chr7_2:44611832-44611851 None:intergenic 35.0%
CTTTAACATTCTTGGATCCA+AGG - chr7_2:44611939-44611958 None:intergenic 35.0%
! GTCCTTTTCAATAGCTGTTA+TGG - chr7_2:44611971-44611990 None:intergenic 35.0%
TGTGGTTGTGTGAATGAAAT+CGG + chr7_2:44612052-44612071 Msa1059060:three_prime_UTR 35.0%
GCATGGATAAGAGTAATATG+AGG + chr7_2:44612083-44612102 Msa1059060:three_prime_UTR 35.0%
TCAATAAAACCATCAAGGGT+AGG + chr7_2:44612113-44612132 Msa1059060:three_prime_UTR 35.0%
GAGTTAAGAATGTCAGCAAA+TGG - chr7_2:44610821-44610840 None:intergenic 35.0%
GCATATTTGAGCAATGTTAG+TGG - chr7_2:44611163-44611182 None:intergenic 35.0%
AAATTGGTACCTGTCATGTT+TGG - chr7_2:44611312-44611331 None:intergenic 35.0%
TTATTGTAGTGACTAACTGC+TGG - chr7_2:44611446-44611465 None:intergenic 35.0%
ATATACTTTGAGCATAGCCT+TGG + chr7_2:44611646-44611665 Msa1059060:three_prime_UTR 35.0%
TAACACAAATGATTCTCTGG+TGG - chr7_2:44611832-44611851 None:intergenic 35.0%
CTTTAACATTCTTGGATCCA+AGG - chr7_2:44611939-44611958 None:intergenic 35.0%
! GTCCTTTTCAATAGCTGTTA+TGG - chr7_2:44611971-44611990 None:intergenic 35.0%
TGTGGTTGTGTGAATGAAAT+CGG + chr7_2:44612052-44612071 Msa1059060:three_prime_UTR 35.0%
GCATGGATAAGAGTAATATG+AGG + chr7_2:44612083-44612102 Msa1059060:three_prime_UTR 35.0%
TCAATAAAACCATCAAGGGT+AGG + chr7_2:44612113-44612132 Msa1059060:three_prime_UTR 35.0%
AGATGAAGCCAATACAACAG+AGG - chr7_2:44610798-44610817 None:intergenic 40.0%
TTTGTGTAGGATTGCACATC+TGG - chr7_2:44611023-44611042 None:intergenic 40.0%
!! CTTACTTGATTTTGGTCCCT+TGG + chr7_2:44611202-44611221 Msa1059060:intron 40.0%
CATTTATCTGGCATCACCAA+GGG - chr7_2:44611221-44611240 None:intergenic 40.0%
TTCCTCTTCCAGCATTTATC+TGG - chr7_2:44611233-44611252 None:intergenic 40.0%
! CTGTCATGTTTGGAATGGAA+AGG - chr7_2:44611302-44611321 None:intergenic 40.0%
CTTTCCATTCCAAACATGAC+AGG + chr7_2:44611300-44611319 Msa1059060:CDS 40.0%
! CCAAGGTTTAATTTCCTCTC+TGG - chr7_2:44611922-44611941 None:intergenic 40.0%
CCAGAGAGGAAATTAAACCT+TGG + chr7_2:44611919-44611938 Msa1059060:intron 40.0%
GCCCATAACAGCTATTGAAA+AGG + chr7_2:44611966-44611985 Msa1059060:three_prime_UTR 40.0%
TGAAATCGGTGGTATTTGCA+TGG + chr7_2:44612066-44612085 Msa1059060:three_prime_UTR 40.0%
AGATGAAGCCAATACAACAG+AGG - chr7_2:44610798-44610817 None:intergenic 40.0%
TTTGTGTAGGATTGCACATC+TGG - chr7_2:44611023-44611042 None:intergenic 40.0%
!! CTTACTTGATTTTGGTCCCT+TGG + chr7_2:44611202-44611221 Msa1059060:intron 40.0%
CATTTATCTGGCATCACCAA+GGG - chr7_2:44611221-44611240 None:intergenic 40.0%
TTCCTCTTCCAGCATTTATC+TGG - chr7_2:44611233-44611252 None:intergenic 40.0%
! CTGTCATGTTTGGAATGGAA+AGG - chr7_2:44611302-44611321 None:intergenic 40.0%
CTTTCCATTCCAAACATGAC+AGG + chr7_2:44611300-44611319 Msa1059060:CDS 40.0%
! CCAAGGTTTAATTTCCTCTC+TGG - chr7_2:44611922-44611941 None:intergenic 40.0%
CCAGAGAGGAAATTAAACCT+TGG + chr7_2:44611919-44611938 Msa1059060:intron 40.0%
GCCCATAACAGCTATTGAAA+AGG + chr7_2:44611966-44611985 Msa1059060:three_prime_UTR 40.0%
TGAAATCGGTGGTATTTGCA+TGG + chr7_2:44612066-44612085 Msa1059060:three_prime_UTR 40.0%
GCATTTATCTGGCATCACCA+AGG - chr7_2:44611222-44611241 None:intergenic 45.0%
! TGGTGATGCCAGATAAATGC+TGG + chr7_2:44611222-44611241 Msa1059060:intron 45.0%
TGCCAGATAAATGCTGGAAG+AGG + chr7_2:44611228-44611247 Msa1059060:intron 45.0%
!! AGCATTGACAACCGCATTTG+TGG + chr7_2:44611267-44611286 Msa1059060:CDS 45.0%
GGAGAAACTCACCACAAATG+CGG - chr7_2:44611281-44611300 None:intergenic 45.0%
GGTACCTGTCATGTTTGGAA+TGG - chr7_2:44611307-44611326 None:intergenic 45.0%
CAGAGCTAGAACTTAATGCC+TGG - chr7_2:44611568-44611587 None:intergenic 45.0%
TGAGCTGATGACATCTCCAT+TGG + chr7_2:44611599-44611618 Msa1059060:three_prime_UTR 45.0%
CTGATGACATCTCCATTGGA+GGG + chr7_2:44611603-44611622 Msa1059060:three_prime_UTR 45.0%
GGTTGTGTGAATGAAATCGG+TGG + chr7_2:44612055-44612074 Msa1059060:three_prime_UTR 45.0%
GCATTTATCTGGCATCACCA+AGG - chr7_2:44611222-44611241 None:intergenic 45.0%
! TGGTGATGCCAGATAAATGC+TGG + chr7_2:44611222-44611241 Msa1059060:intron 45.0%
TGCCAGATAAATGCTGGAAG+AGG + chr7_2:44611228-44611247 Msa1059060:intron 45.0%
!! AGCATTGACAACCGCATTTG+TGG + chr7_2:44611267-44611286 Msa1059060:CDS 45.0%
GGAGAAACTCACCACAAATG+CGG - chr7_2:44611281-44611300 None:intergenic 45.0%
GGTACCTGTCATGTTTGGAA+TGG - chr7_2:44611307-44611326 None:intergenic 45.0%
CAGAGCTAGAACTTAATGCC+TGG - chr7_2:44611568-44611587 None:intergenic 45.0%
TGAGCTGATGACATCTCCAT+TGG + chr7_2:44611599-44611618 Msa1059060:three_prime_UTR 45.0%
CTGATGACATCTCCATTGGA+GGG + chr7_2:44611603-44611622 Msa1059060:three_prime_UTR 45.0%
GGTTGTGTGAATGAAATCGG+TGG + chr7_2:44612055-44612074 Msa1059060:three_prime_UTR 45.0%
GCTGATGACATCTCCATTGG+AGG + chr7_2:44611602-44611621 Msa1059060:three_prime_UTR 50.0%
!! AGGGTTAGCTGAGCCTAGAA+TGG + chr7_2:44611622-44611641 Msa1059060:three_prime_UTR 50.0%
CGAAATGCTCCTACCCTTGA+TGG - chr7_2:44612125-44612144 None:intergenic 50.0%
GCTGATGACATCTCCATTGG+AGG + chr7_2:44611602-44611621 Msa1059060:three_prime_UTR 50.0%
!! AGGGTTAGCTGAGCCTAGAA+TGG + chr7_2:44611622-44611641 Msa1059060:three_prime_UTR 50.0%
CGAAATGCTCCTACCCTTGA+TGG - chr7_2:44612125-44612144 None:intergenic 50.0%
AGGCTCAGCTAACCCTCCAA+TGG - chr7_2:44611618-44611637 None:intergenic 55.0%
AGGCTCAGCTAACCCTCCAA+TGG - chr7_2:44611618-44611637 None:intergenic 55.0%
GGTGCGGAACAACACCAGAG+AGG + chr7_2:44611905-44611924 Msa1059060:intron 60.0%
GGTGCGGAACAACACCAGAG+AGG + chr7_2:44611905-44611924 Msa1059060:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 44610791 44612144 44610791 ID=Msa1059060;Name=Msa1059060
chr7_2 mRNA 44610791 44612144 44610791 ID=Msa1059060-mRNA-1;Parent=Msa1059060;Name=Msa1059060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.75|1|0.66|0.5|4|541|70
chr7_2 exon 44610791 44610901 44610791 ID=Msa1059060-mRNA-1:exon:8084;Parent=Msa1059060-mRNA-1
chr7_2 exon 44611234 44611321 44611234 ID=Msa1059060-mRNA-1:exon:8085;Parent=Msa1059060-mRNA-1
chr7_2 exon 44611569 44611901 44611569 ID=Msa1059060-mRNA-1:exon:8086;Parent=Msa1059060-mRNA-1
chr7_2 exon 44611923 44612144 44611923 ID=Msa1059060-mRNA-1:exon:8087;Parent=Msa1059060-mRNA-1
chr7_2 CDS 44610791 44610901 44610791 ID=Msa1059060-mRNA-1:cds;Parent=Msa1059060-mRNA-1
chr7_2 CDS 44611234 44611321 44611234 ID=Msa1059060-mRNA-1:cds;Parent=Msa1059060-mRNA-1
chr7_2 CDS 44611569 44611582 44611569 ID=Msa1059060-mRNA-1:cds;Parent=Msa1059060-mRNA-1
chr7_2 three_prime_UTR 44611583 44611901 44611583 ID=Msa1059060-mRNA-1:three_prime_utr;Parent=Msa1059060-mRNA-1
chr7_2 three_prime_UTR 44611923 44612144 44611923 ID=Msa1059060-mRNA-1:three_prime_utr;Parent=Msa1059060-mRNA-1
Gene Sequence

>Msa1059060

ATGGCCTCTGTTGTATTGGCTTCATCTCCATTTGCTGACATTCTTAACTCAATTCCATTCCAAAAATTAGTCACTTTTTCTCAATCCTTATTTTTCTTCACTGATCCAAAGATAAATGCTGGAAGAGGAAGAAGAATTGCTTTGAGCATTGACAACCGCATTTGTGGTGAGTTTCTCCTTTCCATTCCAAACATGACAGGCATTAAGTTCTAG
Protein sequence

>Msa1059060

MASVVLASSPFADILNSIPFQKLVTFSQSLFFFTDPKINAGRGRRIALSIDNRICGEFLLSIPNMTGIKF*