AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 43 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATATATGTCCAGAATTT+TGG 0.147464 7_4:+46030451 Msa1157150:three_prime_UTR
CATCAACACTTTAACATTCT+TGG 0.221440 7_4:-46030704 None:intergenic
TACTTTGAAAACCAAAATTC+TGG 0.271661 7_4:-46030462 None:intergenic
GAATATGTGAAAGAATTTAT+AGG 0.272111 7_4:-46030538 None:intergenic
CCAAATGCTCCTACCCTTGA+TGG 0.283305 7_4:-46030882 None:intergenic
CTCAAAGTATATTCCATTCT+AGG 0.283413 7_4:-46030419 None:intergenic
CCTTAGATTCATTATTGTAT+TGG 0.309848 7_4:+46030502 Msa1157150:three_prime_UTR
CCAATACAATAATGAATCTA+AGG 0.313428 7_4:-46030502 None:intergenic
CTCATAAAGATAAGGAAGTT+TGG 0.337948 7_4:+46030779 Msa1157150:three_prime_UTR
ATAAATGGCCTCTGTTGTAT+TGG 0.355749 7_4:+46029574 None:intergenic
CCATCAAGGGTAGGAGCATT+TGG 0.380245 7_4:+46030882 Msa1157150:three_prime_UTR
CCAAGGTTTAATTTCCTCTC+TGG 0.382241 7_4:-46030679 None:intergenic
TCTTAACACAAATGATTCTC+TGG 0.426684 7_4:-46030616 None:intergenic
AAATTGGTACCTGTCATGTT+TGG 0.444000 7_4:-46030099 None:intergenic
TTAAGAATCCACACAGCAAA+TGG 0.453121 7_4:-46029605 None:intergenic
ATATACTTTGAGCATAGCCT+TGG 0.480996 7_4:+46030430 Msa1157150:three_prime_UTR
AGCATTGACAACCGCATTTG+TGG 0.487180 7_4:+46030057 Msa1157150:CDS
CTTTAACATTCTTGGATCCA+AGG 0.492851 7_4:-46030696 None:intergenic
GCCCATAACAGCTATTGAAA+AGG 0.501298 7_4:+46030726 Msa1157150:three_prime_UTR
CTTCATCTCCATTTGCTGTG+TGG 0.503675 7_4:+46029597 Msa1157150:CDS
TGAGCTGATGATATCTCCAT+TGG 0.524301 7_4:+46030383 Msa1157150:three_prime_UTR
GTTTATCAATAAAACCATCA+AGG 0.525145 7_4:+46030868 Msa1157150:three_prime_UTR
AGGGTTAGCTGAGCCTAGAA+TGG 0.531169 7_4:+46030406 Msa1157150:three_prime_UTR
AAATCAAGCTCATAAAGATA+AGG 0.542392 7_4:+46030771 Msa1157150:three_prime_UTR
GCTGATGATATCTCCATTGG+AGG 0.544157 7_4:+46030386 Msa1157150:three_prime_UTR
AATTCTGGACATATATTCCA+AGG 0.548611 7_4:-46030447 None:intergenic
TGGTGATGCCAGATAAATGC+AGG 0.566455 7_4:+46030012 Msa1157150:intron
CTTTCCATTCCAAACATGAC+AGG 0.566892 7_4:+46030090 Msa1157150:CDS
AGGCTCAGCTAACCCTCCAA+TGG 0.569211 7_4:-46030399 None:intergenic
TCAATAAAACCATCAAGGGT+AGG 0.573610 7_4:+46030873 Msa1157150:three_prime_UTR
TTTATCAATAAAACCATCAA+GGG 0.578767 7_4:+46030869 Msa1157150:three_prime_UTR
GGTACCTGTCATGTTTGGAA+TGG 0.579812 7_4:-46030094 None:intergenic
TGCCAGATAAATGCAGGAAG+AGG 0.585925 7_4:+46030018 Msa1157150:intron
CCAGAGAGGAAATTAAACCT+TGG 0.586961 7_4:+46030679 Msa1157150:three_prime_UTR
TGAAATCGATGGTATTTGCA+TGG 0.606172 7_4:+46030826 Msa1157150:three_prime_UTR
CTGTCATGTTTGGAATGGAA+AGG 0.607349 7_4:-46030089 None:intergenic
GCATGGATAAGACTAATATG+AGG 0.610390 7_4:+46030843 Msa1157150:three_prime_UTR
AAGTTTGGTTATTTGAGATG+TGG 0.619666 7_4:+46030794 Msa1157150:three_prime_UTR
CTGATGATATCTCCATTGGA+GGG 0.658515 7_4:+46030387 Msa1157150:three_prime_UTR
TAACACAAATGATTCTCTGG+TGG 0.665197 7_4:-46030613 None:intergenic
GGAGAAACTCACCACAAATG+CGG 0.686116 7_4:-46030068 None:intergenic
GGTTGTGTGAATGAAATCGA+TGG 0.720556 7_4:+46030815 Msa1157150:three_prime_UTR
AGATGAAGCCAATACAACAG+AGG 0.729885 7_4:-46029582 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAGAAAAAGAAAA+GGG - chr7_4:46029725-46029744 None:intergenic 15.0%
!!! ATAAGTATCTAAAATAAAAG+TGG - chr7_4:46030296-46030315 None:intergenic 15.0%
!! TATTCATGAAAAAAATTTCA+AGG + chr7_4:46030645-46030664 Msa1157150:three_prime_UTR 15.0%
!! AAAGAAAAAGAAAAAGAAAA+GGG - chr7_4:46029725-46029744 None:intergenic 15.0%
!!! ATAAGTATCTAAAATAAAAG+TGG - chr7_4:46030296-46030315 None:intergenic 15.0%
!! TATTCATGAAAAAAATTTCA+AGG + chr7_4:46030645-46030664 Msa1157150:three_prime_UTR 15.0%
!!! AAAGTGACTAATTTTTGAAA+TGG - chr7_4:46029638-46029657 None:intergenic 20.0%
!! GAAAGAAAAAGAAAAAGAAA+AGG - chr7_4:46029726-46029745 None:intergenic 20.0%
!!! AAAAAAATTGCTTTGAAGAA+AGG - chr7_4:46030148-46030167 None:intergenic 20.0%
!!! AAGTTTTCTTCTTTCTTTAT+TGG - chr7_4:46030183-46030202 None:intergenic 20.0%
!! GAATATGTGAAAGAATTTAT+AGG - chr7_4:46030541-46030560 None:intergenic 20.0%
!! TTTATCAATAAAACCATCAA+GGG + chr7_4:46030869-46030888 Msa1157150:three_prime_UTR 20.0%
!!! AAAGTGACTAATTTTTGAAA+TGG - chr7_4:46029638-46029657 None:intergenic 20.0%
!! GAAAGAAAAAGAAAAAGAAA+AGG - chr7_4:46029726-46029745 None:intergenic 20.0%
!!! AAAAAAATTGCTTTGAAGAA+AGG - chr7_4:46030148-46030167 None:intergenic 20.0%
!!! AAGTTTTCTTCTTTCTTTAT+TGG - chr7_4:46030183-46030202 None:intergenic 20.0%
!! GAATATGTGAAAGAATTTAT+AGG - chr7_4:46030541-46030560 None:intergenic 20.0%
!! TTTATCAATAAAACCATCAA+GGG + chr7_4:46030869-46030888 Msa1157150:three_prime_UTR 20.0%
!!! GACTAATTTTTGAAATGGAA+TGG - chr7_4:46029633-46029652 None:intergenic 25.0%
! CATCTTGAAATTAAAATGCA+TGG - chr7_4:46029925-46029944 None:intergenic 25.0%
! ATAATTACAGGTGCATATTT+AGG + chr7_4:46030246-46030265 Msa1157150:intron 25.0%
!! TACTTTGAAAACCAAAATTC+TGG - chr7_4:46030465-46030484 None:intergenic 25.0%
!!! GAATTTTGGTTTTCAAAGTA+AGG + chr7_4:46030465-46030484 Msa1157150:three_prime_UTR 25.0%
! CCAATACAATAATGAATCTA+AGG - chr7_4:46030505-46030524 None:intergenic 25.0%
! CCTTAGATTCATTATTGTAT+TGG + chr7_4:46030502-46030521 Msa1157150:three_prime_UTR 25.0%
!!! TCTATGTTTTTAGAAAGAGT+CGG + chr7_4:46030583-46030602 Msa1157150:three_prime_UTR 25.0%
! AAATCAAGCTCATAAAGATA+AGG + chr7_4:46030771-46030790 Msa1157150:three_prime_UTR 25.0%
! GTTTATCAATAAAACCATCA+AGG + chr7_4:46030868-46030887 Msa1157150:three_prime_UTR 25.0%
!!! GACTAATTTTTGAAATGGAA+TGG - chr7_4:46029633-46029652 None:intergenic 25.0%
! CATCTTGAAATTAAAATGCA+TGG - chr7_4:46029925-46029944 None:intergenic 25.0%
! ATAATTACAGGTGCATATTT+AGG + chr7_4:46030246-46030265 Msa1157150:intron 25.0%
!! TACTTTGAAAACCAAAATTC+TGG - chr7_4:46030465-46030484 None:intergenic 25.0%
!!! GAATTTTGGTTTTCAAAGTA+AGG + chr7_4:46030465-46030484 Msa1157150:three_prime_UTR 25.0%
! CCAATACAATAATGAATCTA+AGG - chr7_4:46030505-46030524 None:intergenic 25.0%
! CCTTAGATTCATTATTGTAT+TGG + chr7_4:46030502-46030521 Msa1157150:three_prime_UTR 25.0%
!!! TCTATGTTTTTAGAAAGAGT+CGG + chr7_4:46030583-46030602 Msa1157150:three_prime_UTR 25.0%
! AAATCAAGCTCATAAAGATA+AGG + chr7_4:46030771-46030790 Msa1157150:three_prime_UTR 25.0%
! GTTTATCAATAAAACCATCA+AGG + chr7_4:46030868-46030887 Msa1157150:three_prime_UTR 25.0%
TGGATCAGTGAAGAAAAATA+AGG - chr7_4:46029669-46029688 None:intergenic 30.0%
! ATTTTTCTTCACTGATCCAA+AGG + chr7_4:46029670-46029689 Msa1157150:CDS 30.0%
CTAACATTTATGCTTACCTT+TGG - chr7_4:46029689-46029708 None:intergenic 30.0%
GTTGAGTGATAGATTAATCA+TGG - chr7_4:46029766-46029785 None:intergenic 30.0%
TCCTACACAAATCAAAATGA+AGG + chr7_4:46029822-46029841 Msa1157150:intron 30.0%
!!! TCCTTCATTTTGATTTGTGT+AGG - chr7_4:46029826-46029845 None:intergenic 30.0%
ATATTTGAGCAATGTTAGTG+GGG - chr7_4:46029951-46029970 None:intergenic 30.0%
CATATTTGAGCAATGTTAGT+GGG - chr7_4:46029952-46029971 None:intergenic 30.0%
! AGACGATTCTTACTTGATTT+TGG + chr7_4:46029984-46030003 Msa1157150:intron 30.0%
ATGCAGAAGAGATGAAAAAT+TGG - chr7_4:46030118-46030137 None:intergenic 30.0%
TCAGTCACTACAATAATTAC+AGG + chr7_4:46030234-46030253 Msa1157150:intron 30.0%
CTCAAAGTATATTCCATTCT+AGG - chr7_4:46030422-46030441 None:intergenic 30.0%
AATTCTGGACATATATTCCA+AGG - chr7_4:46030450-46030469 None:intergenic 30.0%
! GGAATATATGTCCAGAATTT+TGG + chr7_4:46030451-46030470 Msa1157150:three_prime_UTR 30.0%
! TGGTTTTCAAAGTAAGGAAA+AGG + chr7_4:46030471-46030490 Msa1157150:three_prime_UTR 30.0%
TCTTAACACAAATGATTCTC+TGG - chr7_4:46030619-46030638 None:intergenic 30.0%
CATCAACACTTTAACATTCT+TGG - chr7_4:46030707-46030726 None:intergenic 30.0%
! TCCTTTTCAATAGCTGTTAT+GGG - chr7_4:46030730-46030749 None:intergenic 30.0%
CTCATAAAGATAAGGAAGTT+TGG + chr7_4:46030779-46030798 Msa1157150:three_prime_UTR 30.0%
! AAGTTTGGTTATTTGAGATG+TGG + chr7_4:46030794-46030813 Msa1157150:three_prime_UTR 30.0%
TGGATCAGTGAAGAAAAATA+AGG - chr7_4:46029669-46029688 None:intergenic 30.0%
! ATTTTTCTTCACTGATCCAA+AGG + chr7_4:46029670-46029689 Msa1157150:CDS 30.0%
CTAACATTTATGCTTACCTT+TGG - chr7_4:46029689-46029708 None:intergenic 30.0%
GTTGAGTGATAGATTAATCA+TGG - chr7_4:46029766-46029785 None:intergenic 30.0%
TCCTACACAAATCAAAATGA+AGG + chr7_4:46029822-46029841 Msa1157150:intron 30.0%
!!! TCCTTCATTTTGATTTGTGT+AGG - chr7_4:46029826-46029845 None:intergenic 30.0%
ATATTTGAGCAATGTTAGTG+GGG - chr7_4:46029951-46029970 None:intergenic 30.0%
CATATTTGAGCAATGTTAGT+GGG - chr7_4:46029952-46029971 None:intergenic 30.0%
! AGACGATTCTTACTTGATTT+TGG + chr7_4:46029984-46030003 Msa1157150:intron 30.0%
ATGCAGAAGAGATGAAAAAT+TGG - chr7_4:46030118-46030137 None:intergenic 30.0%
TCAGTCACTACAATAATTAC+AGG + chr7_4:46030234-46030253 Msa1157150:intron 30.0%
CTCAAAGTATATTCCATTCT+AGG - chr7_4:46030422-46030441 None:intergenic 30.0%
AATTCTGGACATATATTCCA+AGG - chr7_4:46030450-46030469 None:intergenic 30.0%
! GGAATATATGTCCAGAATTT+TGG + chr7_4:46030451-46030470 Msa1157150:three_prime_UTR 30.0%
! TGGTTTTCAAAGTAAGGAAA+AGG + chr7_4:46030471-46030490 Msa1157150:three_prime_UTR 30.0%
TCTTAACACAAATGATTCTC+TGG - chr7_4:46030619-46030638 None:intergenic 30.0%
CATCAACACTTTAACATTCT+TGG - chr7_4:46030707-46030726 None:intergenic 30.0%
! TCCTTTTCAATAGCTGTTAT+GGG - chr7_4:46030730-46030749 None:intergenic 30.0%
CTCATAAAGATAAGGAAGTT+TGG + chr7_4:46030779-46030798 Msa1157150:three_prime_UTR 30.0%
! AAGTTTGGTTATTTGAGATG+TGG + chr7_4:46030794-46030813 Msa1157150:three_prime_UTR 30.0%
TTAAGAATCCACACAGCAAA+TGG - chr7_4:46029608-46029627 None:intergenic 35.0%
GCATATTTGAGCAATGTTAG+TGG - chr7_4:46029953-46029972 None:intergenic 35.0%
AAATTGGTACCTGTCATGTT+TGG - chr7_4:46030102-46030121 None:intergenic 35.0%
AGCTGTTATGTTTATGATCC+AGG + chr7_4:46030331-46030350 Msa1157150:intron 35.0%
ATATACTTTGAGCATAGCCT+TGG + chr7_4:46030430-46030449 Msa1157150:three_prime_UTR 35.0%
TAACACAAATGATTCTCTGG+TGG - chr7_4:46030616-46030635 None:intergenic 35.0%
CTTTAACATTCTTGGATCCA+AGG - chr7_4:46030699-46030718 None:intergenic 35.0%
! GTCCTTTTCAATAGCTGTTA+TGG - chr7_4:46030731-46030750 None:intergenic 35.0%
TGAAATCGATGGTATTTGCA+TGG + chr7_4:46030826-46030845 Msa1157150:three_prime_UTR 35.0%
GCATGGATAAGACTAATATG+AGG + chr7_4:46030843-46030862 Msa1157150:three_prime_UTR 35.0%
TCAATAAAACCATCAAGGGT+AGG + chr7_4:46030873-46030892 Msa1157150:three_prime_UTR 35.0%
TTAAGAATCCACACAGCAAA+TGG - chr7_4:46029608-46029627 None:intergenic 35.0%
GCATATTTGAGCAATGTTAG+TGG - chr7_4:46029953-46029972 None:intergenic 35.0%
AAATTGGTACCTGTCATGTT+TGG - chr7_4:46030102-46030121 None:intergenic 35.0%
AGCTGTTATGTTTATGATCC+AGG + chr7_4:46030331-46030350 Msa1157150:intron 35.0%
ATATACTTTGAGCATAGCCT+TGG + chr7_4:46030430-46030449 Msa1157150:three_prime_UTR 35.0%
TAACACAAATGATTCTCTGG+TGG - chr7_4:46030616-46030635 None:intergenic 35.0%
CTTTAACATTCTTGGATCCA+AGG - chr7_4:46030699-46030718 None:intergenic 35.0%
! GTCCTTTTCAATAGCTGTTA+TGG - chr7_4:46030731-46030750 None:intergenic 35.0%
TGAAATCGATGGTATTTGCA+TGG + chr7_4:46030826-46030845 Msa1157150:three_prime_UTR 35.0%
GCATGGATAAGACTAATATG+AGG + chr7_4:46030843-46030862 Msa1157150:three_prime_UTR 35.0%
TCAATAAAACCATCAAGGGT+AGG + chr7_4:46030873-46030892 Msa1157150:three_prime_UTR 35.0%
AGATGAAGCCAATACAACAG+AGG - chr7_4:46029585-46029604 None:intergenic 40.0%
TTTGTGTAGGATTGCACATC+TGG - chr7_4:46029813-46029832 None:intergenic 40.0%
!! CTTACTTGATTTTGGTCCCT+TGG + chr7_4:46029992-46030011 Msa1157150:intron 40.0%
CATTTATCTGGCATCACCAA+GGG - chr7_4:46030011-46030030 None:intergenic 40.0%
TTCCTCTTCCTGCATTTATC+TGG - chr7_4:46030023-46030042 None:intergenic 40.0%
! CTGTCATGTTTGGAATGGAA+AGG - chr7_4:46030092-46030111 None:intergenic 40.0%
CTTTCCATTCCAAACATGAC+AGG + chr7_4:46030090-46030109 Msa1157150:CDS 40.0%
TGAGCTGATGATATCTCCAT+TGG + chr7_4:46030383-46030402 Msa1157150:three_prime_UTR 40.0%
CTGATGATATCTCCATTGGA+GGG + chr7_4:46030387-46030406 Msa1157150:three_prime_UTR 40.0%
! CCAAGGTTTAATTTCCTCTC+TGG - chr7_4:46030682-46030701 None:intergenic 40.0%
CCAGAGAGGAAATTAAACCT+TGG + chr7_4:46030679-46030698 Msa1157150:three_prime_UTR 40.0%
GCCCATAACAGCTATTGAAA+AGG + chr7_4:46030726-46030745 Msa1157150:three_prime_UTR 40.0%
GGTTGTGTGAATGAAATCGA+TGG + chr7_4:46030815-46030834 Msa1157150:three_prime_UTR 40.0%
AGATGAAGCCAATACAACAG+AGG - chr7_4:46029585-46029604 None:intergenic 40.0%
TTTGTGTAGGATTGCACATC+TGG - chr7_4:46029813-46029832 None:intergenic 40.0%
!! CTTACTTGATTTTGGTCCCT+TGG + chr7_4:46029992-46030011 Msa1157150:intron 40.0%
CATTTATCTGGCATCACCAA+GGG - chr7_4:46030011-46030030 None:intergenic 40.0%
TTCCTCTTCCTGCATTTATC+TGG - chr7_4:46030023-46030042 None:intergenic 40.0%
! CTGTCATGTTTGGAATGGAA+AGG - chr7_4:46030092-46030111 None:intergenic 40.0%
CTTTCCATTCCAAACATGAC+AGG + chr7_4:46030090-46030109 Msa1157150:CDS 40.0%
TGAGCTGATGATATCTCCAT+TGG + chr7_4:46030383-46030402 Msa1157150:three_prime_UTR 40.0%
CTGATGATATCTCCATTGGA+GGG + chr7_4:46030387-46030406 Msa1157150:three_prime_UTR 40.0%
! CCAAGGTTTAATTTCCTCTC+TGG - chr7_4:46030682-46030701 None:intergenic 40.0%
CCAGAGAGGAAATTAAACCT+TGG + chr7_4:46030679-46030698 Msa1157150:three_prime_UTR 40.0%
GCCCATAACAGCTATTGAAA+AGG + chr7_4:46030726-46030745 Msa1157150:three_prime_UTR 40.0%
GGTTGTGTGAATGAAATCGA+TGG + chr7_4:46030815-46030834 Msa1157150:three_prime_UTR 40.0%
!! CTTCATCTCCATTTGCTGTG+TGG + chr7_4:46029597-46029616 Msa1157150:CDS 45.0%
GCATTTATCTGGCATCACCA+AGG - chr7_4:46030012-46030031 None:intergenic 45.0%
! TGGTGATGCCAGATAAATGC+AGG + chr7_4:46030012-46030031 Msa1157150:intron 45.0%
TGCCAGATAAATGCAGGAAG+AGG + chr7_4:46030018-46030037 Msa1157150:intron 45.0%
!! AGCATTGACAACCGCATTTG+TGG + chr7_4:46030057-46030076 Msa1157150:CDS 45.0%
GGAGAAACTCACCACAAATG+CGG - chr7_4:46030071-46030090 None:intergenic 45.0%
GGTACCTGTCATGTTTGGAA+TGG - chr7_4:46030097-46030116 None:intergenic 45.0%
CAGAGCTAGAACTTAATGCC+TGG - chr7_4:46030352-46030371 None:intergenic 45.0%
GCTGATGATATCTCCATTGG+AGG + chr7_4:46030386-46030405 Msa1157150:three_prime_UTR 45.0%
!! AGGTTTTGTGTGAACCAGAG+AGG + chr7_4:46030665-46030684 Msa1157150:three_prime_UTR 45.0%
!! CTTCATCTCCATTTGCTGTG+TGG + chr7_4:46029597-46029616 Msa1157150:CDS 45.0%
GCATTTATCTGGCATCACCA+AGG - chr7_4:46030012-46030031 None:intergenic 45.0%
! TGGTGATGCCAGATAAATGC+AGG + chr7_4:46030012-46030031 Msa1157150:intron 45.0%
TGCCAGATAAATGCAGGAAG+AGG + chr7_4:46030018-46030037 Msa1157150:intron 45.0%
!! AGCATTGACAACCGCATTTG+TGG + chr7_4:46030057-46030076 Msa1157150:CDS 45.0%
GGAGAAACTCACCACAAATG+CGG - chr7_4:46030071-46030090 None:intergenic 45.0%
GGTACCTGTCATGTTTGGAA+TGG - chr7_4:46030097-46030116 None:intergenic 45.0%
CAGAGCTAGAACTTAATGCC+TGG - chr7_4:46030352-46030371 None:intergenic 45.0%
GCTGATGATATCTCCATTGG+AGG + chr7_4:46030386-46030405 Msa1157150:three_prime_UTR 45.0%
!! AGGTTTTGTGTGAACCAGAG+AGG + chr7_4:46030665-46030684 Msa1157150:three_prime_UTR 45.0%
!! AGGGTTAGCTGAGCCTAGAA+TGG + chr7_4:46030406-46030425 Msa1157150:three_prime_UTR 50.0%
CCAAATGCTCCTACCCTTGA+TGG - chr7_4:46030885-46030904 None:intergenic 50.0%
!! CCATCAAGGGTAGGAGCATT+TGG + chr7_4:46030882-46030901 Msa1157150:three_prime_UTR 50.0%
!! AGGGTTAGCTGAGCCTAGAA+TGG + chr7_4:46030406-46030425 Msa1157150:three_prime_UTR 50.0%
CCAAATGCTCCTACCCTTGA+TGG - chr7_4:46030885-46030904 None:intergenic 50.0%
AGGCTCAGCTAACCCTCCAA+TGG - chr7_4:46030402-46030421 None:intergenic 55.0%
AGGCTCAGCTAACCCTCCAA+TGG - chr7_4:46030402-46030421 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46029578 46030904 46029578 ID=Msa1157150;Name=Msa1157150
chr7_4 mRNA 46029578 46030904 46029578 ID=Msa1157150-mRNA-1;Parent=Msa1157150;Name=Msa1157150-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.66|1|0.5|0.66|3|538|71
chr7_4 exon 46029578 46029691 46029578 ID=Msa1157150-mRNA-1:exon:11951;Parent=Msa1157150-mRNA-1
chr7_4 exon 46030024 46030111 46030024 ID=Msa1157150-mRNA-1:exon:11952;Parent=Msa1157150-mRNA-1
chr7_4 exon 46030353 46030904 46030353 ID=Msa1157150-mRNA-1:exon:11953;Parent=Msa1157150-mRNA-1
chr7_4 CDS 46029578 46029691 46029578 ID=Msa1157150-mRNA-1:cds;Parent=Msa1157150-mRNA-1
chr7_4 CDS 46030024 46030111 46030024 ID=Msa1157150-mRNA-1:cds;Parent=Msa1157150-mRNA-1
chr7_4 CDS 46030353 46030366 46030353 ID=Msa1157150-mRNA-1:cds;Parent=Msa1157150-mRNA-1
chr7_4 three_prime_UTR 46030367 46030904 46030367 ID=Msa1157150-mRNA-1:three_prime_utr;Parent=Msa1157150-mRNA-1
Gene Sequence

>Msa1157150

ATGGCCTCTGTTGTATTGGCTTCATCTCCATTTGCTGTGTGGATTCTTAACTCCATTCCATTTCAAAAATTAGTCACTTTTTCTCAATCCTTATTTTTCTTCACTGATCCAAAGATAAATGCAGGAAGAGGAAGAAGAATTGCTTTGAGCATTGACAACCGCATTTGTGGTGAGTTTCTCCTTTCCATTCCAAACATGACAGGCATTAAGTTCTAG
Protein sequence

>Msa1157150

MASVVLASSPFAVWILNSIPFQKLVTFSQSLFFFTDPKINAGRGRRIALSIDNRICGEFLLSIPNMTGIKF*