AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1060020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1060020 MtrunA17_Chr2g0302631 64.679 218 9 2 116 265 1 218 4.11e-73 238
Msa1060020 MtrunA17_Chr3g0122511 95.960 99 4 0 11 109 185 283 1.98e-61 209
Msa1060020 MtrunA17_Chr1g0203821 86.458 96 9 1 288 379 255 350 2.69e-49 172
Msa1060020 MtrunA17_Chr4g0069251 48.598 214 45 3 116 265 1 213 2.03e-48 172
Msa1060020 MtrunA17_Chr8g0365301 96.429 56 2 0 347 402 3 58 7.29e-30 110
Msa1060020 MtrunA17_Chr4g0047511 94.643 56 3 0 347 402 3 58 2.12e-29 108
Msa1060020 MtrunA17_Chr7g0271451 34.498 229 71 6 116 265 1 229 6.02e-20 92.0
Msa1060020 MtrunA17_Chr3g0096351 31.754 211 77 6 120 265 7 215 5.06e-13 70.9
Msa1060020 MtrunA17_Chr5g0443121 34.404 218 64 8 120 265 7 217 2.34e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1060020 AT5G52030.1 61.468 109 33 3 282 381 121 229 1.53e-34 129
Msa1060020 AT5G52030.2 64.706 102 27 3 286 378 269 370 1.08e-32 128
Msa1060020 AT1G67370.1 55.556 90 35 2 11 97 195 282 2.23e-25 109
Msa1060020 AT5G18500.2 47.857 140 54 5 142 265 64 200 2.07e-21 96.7
Msa1060020 AT5G18500.5 47.857 140 54 5 142 265 64 200 2.07e-21 96.7
Msa1060020 AT5G18500.4 47.857 140 54 5 142 265 64 200 2.07e-21 96.7
Msa1060020 AT5G18500.1 47.857 140 54 5 142 265 64 200 2.07e-21 96.7
Msa1060020 AT5G18500.3 47.857 140 54 5 142 265 64 200 2.07e-21 96.7
Msa1060020 AT5G18500.6 47.857 140 54 5 142 265 64 200 2.07e-21 96.7
Msa1060020 AT2G42960.2 33.953 215 73 8 118 265 5 217 2.11e-15 77.8
Msa1060020 AT2G42960.3 33.953 215 73 8 118 265 5 217 3.01e-15 78.2
Msa1060020 AT2G42960.5 33.953 215 73 8 118 265 5 217 3.01e-15 78.2
Msa1060020 AT2G42960.4 33.953 215 73 8 118 265 5 217 3.01e-15 78.2
Msa1060020 AT2G42960.1 33.953 215 73 8 118 265 5 217 3.01e-15 78.2
Msa1060020 AT1G56720.3 31.308 214 82 6 116 265 1 213 4.45e-15 77.4
Msa1060020 AT1G56720.1 31.308 214 82 6 116 265 1 213 4.45e-15 77.4
Msa1060020 AT1G56720.2 31.308 214 82 6 116 265 1 213 4.45e-15 77.4
Msa1060020 AT1G56720.4 31.308 214 82 6 116 265 1 213 4.45e-15 77.4
Msa1060020 AT3G59110.1 35.135 222 68 9 118 265 5 224 5.15e-15 77.4
Msa1060020 AT3G17420.1 41.727 139 50 6 143 264 63 187 3.18e-14 74.7
Msa1060020 AT4G32200.1 61.818 55 17 2 11 61 214 268 4.08e-13 72.0
Msa1060020 AT4G32200.2 61.818 55 17 2 11 61 214 268 4.14e-13 72.0
Msa1060020 AT1G09440.1 70.455 44 13 0 222 265 148 191 8.77e-12 67.4
Msa1060020 AT1G09440.2 70.455 44 13 0 222 265 148 191 8.77e-12 67.4

Find 87 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGATGTCATTAATTTAA+TGG 0.159794 7_2:-47500712 Msa1060020:CDS
GTCATGCAGCCATCGGATTA+TGG 0.202427 7_2:-47503698 None:intergenic
TTTGCAAAAGACATTATTAT+TGG 0.219336 7_2:-47501979 Msa1060020:CDS
ATTGAAAGCATGGGTATTAA+TGG 0.226541 7_2:-47502478 Msa1060020:CDS
ATTATGGGCCTCCTTTCTTC+AGG 0.236669 7_2:-47503682 Msa1060020:CDS
CTTCTGGCAGTGAAAGAAAA+TGG 0.242628 7_2:-47500475 Msa1060020:CDS
AGGTTGTGAATAACTGTAAA+AGG 0.244188 7_2:-47500848 Msa1060020:CDS
TTAGGAGCATATCGGCTTAT+AGG 0.259018 7_2:-47502116 Msa1060020:intron
TTTATTTGACAACAACAAAA+TGG 0.295901 7_2:-47502547 Msa1060020:CDS
CAATTAGTGGTATAGAAAAT+TGG 0.317060 7_2:+47500657 None:intergenic
ATGGCATCTGATCTAAATTC+AGG 0.325194 7_2:-47502528 Msa1060020:CDS
TCTTGGATACTTCTAATGTT+TGG 0.360110 7_2:-47501327 Msa1060020:CDS
TTATGGGCCTCCTTTCTTCA+GGG 0.388519 7_2:-47503681 Msa1060020:CDS
TTGAGATTTCGAGACCTTGC+TGG 0.392448 7_2:-47500768 Msa1060020:CDS
TCATGCAGCCATCGGATTAT+GGG 0.405554 7_2:-47503697 None:intergenic
CTTATCACTCAAGCTCATAA+AGG 0.409710 7_2:+47502269 None:intergenic
CAACAAGAACAGGAAGATAA+TGG 0.409972 7_2:-47503116 Msa1060020:CDS
GACAGAGAAACAACAAGAAC+AGG 0.411951 7_2:-47503126 Msa1060020:intron
ATTATTGAGGAGTTTCTTAA+CGG 0.412389 7_2:+47501900 None:intergenic
TTGAAAGCATGGGTATTAAT+GGG 0.417741 7_2:-47502477 Msa1060020:CDS
ATACCACTAATTGGCAAAAC+AGG 0.418276 7_2:-47500647 Msa1060020:CDS
ACCTATTGGTTGCAAGTTCA+AGG 0.418671 7_2:+47502001 None:intergenic
GACATTATTATTGGAGAAGG+TGG 0.422046 7_2:-47501970 Msa1060020:CDS
TTAATGGTTCTTTATAGCTT+AGG 0.424486 7_2:-47500696 Msa1060020:CDS
ATCCACTGAAAATGGAGGTT+GGG 0.427292 7_2:-47503618 Msa1060020:CDS
ATCGAGGTCAACTTATCAAC+AGG 0.429933 7_2:-47501933 Msa1060020:CDS
GTATCAGAACTCTTGCTTCA+AGG 0.434040 7_2:-47500625 Msa1060020:intron
AAAAGGGTGGTAGGTGTGAT+TGG 0.444853 7_2:-47500831 Msa1060020:CDS
GGAGATAATAGTAGTCAATC+AGG 0.447697 7_2:-47502201 Msa1060020:CDS
AAGAAGAAGCAAATCATCCT+TGG 0.454004 7_2:-47503648 Msa1060020:CDS
CATCATCACTCATATCATCT+TGG 0.455480 7_2:+47503431 None:intergenic
TTCTGGCAGTGAAAGAAAAT+GGG 0.457408 7_2:-47500474 Msa1060020:CDS
ATGTATAAGAGGTGGCAATA+AGG 0.459297 7_2:+47501016 None:intergenic
GAGTGGAGTAGACCAACTTC+TGG 0.463098 7_2:-47500491 Msa1060020:CDS
TTTCTTTCACTGCCAGAAGT+TGG 0.480033 7_2:+47500479 None:intergenic
TATGCACTGTTAGCCGATGC+AGG 0.484873 7_2:-47500795 Msa1060020:CDS
GATCTGAATGGCTCTCAGTC+AGG 0.486961 7_2:-47502156 Msa1060020:CDS
GCCTTGAACTTGCAACCAAT+AGG 0.490412 7_2:-47502002 Msa1060020:CDS
GTATTAATGGGAATAGTGGT+TGG 0.491829 7_2:-47502465 Msa1060020:intron
GTGGTAGGTGTGATTGGAAA+AGG 0.496641 7_2:-47500825 Msa1060020:CDS
AATCCACTGAAAATGGAGGT+TGG 0.506050 7_2:-47503619 Msa1060020:CDS
GAAGGGATGATCATTGCTCT+TGG 0.507602 7_2:-47501344 Msa1060020:intron
TGGCATCTGATCTAAATTCA+GGG 0.510805 7_2:-47502527 Msa1060020:CDS
CAACAATATATTGATCCCCT+TGG 0.510967 7_2:+47503235 None:intergenic
TAATAGCTTACAAATTATTG+AGG 0.512738 7_2:+47501887 None:intergenic
ATGGGTATTAATGGGAATAG+TGG 0.513957 7_2:-47502469 Msa1060020:CDS
CTGTTCTGCAGTATCTTGCA+TGG 0.516086 7_2:-47500887 Msa1060020:intron
CAATATATTGTTGCACCCAT+AGG 0.519632 7_2:-47503225 Msa1060020:intron
GATAATGGCAAGATTGATGA+AGG 0.521464 7_2:-47503101 Msa1060020:intron
AAAGACATTATTATTGGAGA+AGG 0.523442 7_2:-47501973 Msa1060020:CDS
GTATCTCGTTCATGTATAAG+AGG 0.530170 7_2:+47501005 None:intergenic
GGTTGTGAATAACTGTAAAA+GGG 0.530726 7_2:-47500847 Msa1060020:CDS
TGAGATTTCGAGACCTTGCT+GGG 0.531713 7_2:-47500767 Msa1060020:CDS
ATGGGCCTCCTTTCTTCAGG+GGG 0.533618 7_2:-47503679 Msa1060020:CDS
AGAAGAAGCAAATCATCCTT+GGG 0.537678 7_2:-47503647 Msa1060020:CDS
TAGTGACGGCGATTCTCGAA+AGG 0.537864 7_2:-47502244 Msa1060020:CDS
TTTCAGGTTGATCATACTCA+AGG 0.538633 7_2:-47503258 Msa1060020:intron
CCCTCATTGTCATCCTCACA+AGG 0.538991 7_2:+47503457 None:intergenic
ATGGTCTCTGAAGCGGAGAA+AGG 0.541912 7_2:-47500868 Msa1060020:CDS
TTTATAGGTGAAGAGTGTGC+TGG 0.547236 7_2:-47503482 Msa1060020:intron
ATAAGAGGTGGCAATAAGGA+TGG 0.555215 7_2:+47501020 None:intergenic
TATGGGCCTCCTTTCTTCAG+GGG 0.560733 7_2:-47503680 Msa1060020:CDS
GTTGATCATACTCAAGGCCA+AGG 0.565008 7_2:-47503252 Msa1060020:CDS
AAATCTCAAATTCCCTGCAT+CGG 0.569426 7_2:+47500782 None:intergenic
CGGCTAACAGTGCATATATG+TGG 0.581552 7_2:+47500802 None:intergenic
ATCTTGCATGGTCTCTGAAG+CGG 0.593986 7_2:-47500875 Msa1060020:CDS
TTGAGTGATAAGTTTAGTGA+CGG 0.597655 7_2:-47502258 Msa1060020:CDS
CGTTTAGAGAAAGATCTGAA+TGG 0.607298 7_2:-47502168 Msa1060020:CDS
CCACTGTATCATGTTGAGAG+TGG 0.610898 7_2:-47500508 Msa1060020:CDS
AATAACTGTAAAAGGGTGGT+AGG 0.617141 7_2:-47500840 Msa1060020:CDS
ATGCACTGTTAGCCGATGCA+GGG 0.622174 7_2:-47500794 Msa1060020:CDS
GGAGTTTCTTAACGGCCACA+AGG 0.628154 7_2:+47501908 None:intergenic
TGTGAATAACTGTAAAAGGG+TGG 0.639677 7_2:-47500844 Msa1060020:CDS
TCTCGTTCATGTATAAGAGG+TGG 0.648526 7_2:+47501008 None:intergenic
AAAGGAGGCCCATAATCCGA+TGG 0.652105 7_2:+47503689 None:intergenic
TTGATCATACTCAAGGCCAA+GGG 0.654884 7_2:-47503251 Msa1060020:CDS
CCTTGTGAGGATGACAATGA+GGG 0.661913 7_2:-47503457 Msa1060020:CDS
GAGTGTGCTGGACCCTTGTG+AGG 0.663564 7_2:-47503470 Msa1060020:CDS
GGTTATGAAGTTGTCTATCG+AGG 0.670585 7_2:-47501949 Msa1060020:CDS
CCACTCTCAACATGATACAG+TGG 0.672362 7_2:+47500508 None:intergenic
ACTTATCAACAGGAACCTTG+TGG 0.674632 7_2:-47501923 Msa1060020:CDS
CCCTTGTGAGGATGACAATG+AGG 0.675744 7_2:-47503458 Msa1060020:CDS
TCTCAGTCAGGTGAAGATAG+CGG 0.685113 7_2:-47502144 Msa1060020:CDS
CAGTCAGGTGAAGATAGCGG+CGG 0.686231 7_2:-47502141 Msa1060020:CDS
TGATCATACTCAAGGCCAAG+GGG 0.695983 7_2:-47503250 Msa1060020:CDS
CCTCATTGTCATCCTCACAA+GGG 0.708392 7_2:+47503458 None:intergenic
TTATTATGATACTGACAGTG+AGG 0.740460 7_2:-47503392 Msa1060020:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGAAAAATATTTAATACT+TGG + chr7_2:47500623-47500642 None:intergenic 10.0%
!! AATTCAAAACTAAAAAATAA+AGG + chr7_2:47502315-47502334 None:intergenic 10.0%
!!! AACTTGTTAAAATAATATAC+TGG + chr7_2:47501001-47501020 None:intergenic 15.0%
!!! ATTGTTTTCTTTAAAATTGT+TGG - chr7_2:47503586-47503605 Msa1060020:CDS 15.0%
!!! TTTGAGATTTTACAATTTTC+AGG - chr7_2:47500879-47500898 Msa1060020:CDS 20.0%
!! CTCAGAAAATAAAATATACT+TGG - chr7_2:47501192-47501211 Msa1060020:intron 20.0%
!!! TTGTTACTGAAATTTTTGAA+TGG - chr7_2:47501396-47501415 Msa1060020:intron 20.0%
!! TCAAATAAATCTGCAAATAT+CGG + chr7_2:47501595-47501614 None:intergenic 20.0%
!! TTTATTTGACAACAACAAAA+TGG - chr7_2:47501606-47501625 Msa1060020:intron 20.0%
!!! TCAAAGAAAACAAATGTTTT+TGG - chr7_2:47501652-47501671 Msa1060020:intron 20.0%
!! TTTGCAAAAGACATTATTAT+TGG - chr7_2:47502174-47502193 Msa1060020:CDS 20.0%
!! TAATAGCTTACAAATTATTG+AGG + chr7_2:47502269-47502288 None:intergenic 20.0%
!!! TTATGAACCAAGTTTTATAA+CGG - chr7_2:47502333-47502352 Msa1060020:intron 20.0%
!! AATGTATGATATTAACAAAC+AGG + chr7_2:47502397-47502416 None:intergenic 20.0%
!!! GTCATAAACTATTTGTTTTT+TGG + chr7_2:47502445-47502464 None:intergenic 20.0%
!!! TATGACAAGTTTTAAATTGA+AGG - chr7_2:47502459-47502478 Msa1060020:intron 20.0%
!!! ATTCATTTTCAACACTTTTA+AGG - chr7_2:47502716-47502735 Msa1060020:intron 20.0%
!!! TTCATTTTCAACACTTTTAA+GGG - chr7_2:47502717-47502736 Msa1060020:intron 20.0%
!!! TTCATTGTTTTTTTTGTTGA+AGG - chr7_2:47502791-47502810 Msa1060020:intron 20.0%
!!! TCATTGTTTTTTTTGTTGAA+GGG - chr7_2:47502792-47502811 Msa1060020:intron 20.0%
!! ATATATAAAACTCTCAACTA+AGG - chr7_2:47502951-47502970 Msa1060020:intron 20.0%
!! GATTGATGTCATTAATTTAA+TGG - chr7_2:47503441-47503460 Msa1060020:CDS 20.0%
!! GATATCTTCTTGCATTTTAT+AGG - chr7_2:47500656-47500675 Msa1060020:CDS 25.0%
! AAATAATCCTAATCACCTAT+GGG + chr7_2:47500946-47500965 None:intergenic 25.0%
! AAAATAATCCTAATCACCTA+TGG + chr7_2:47500947-47500966 None:intergenic 25.0%
!! AAAACAATTTTATGTTCGAG+AGG + chr7_2:47501093-47501112 None:intergenic 25.0%
! AAAATAACTCTATTGTGACT+TGG + chr7_2:47501169-47501188 None:intergenic 25.0%
! TTCATTTATGCTTGATTAGT+TGG - chr7_2:47501236-47501255 Msa1060020:intron 25.0%
! TTTGAACAAAAACTGCATTA+TGG + chr7_2:47501277-47501296 None:intergenic 25.0%
!! ATTGTTTGTGTAAATTTGCT+TGG - chr7_2:47501506-47501525 Msa1060020:intron 25.0%
!!! TATTTCTTGCTTTAAGAAAG+AGG - chr7_2:47501746-47501765 Msa1060020:intron 25.0%
!!! CTTCTGAAATAGATAGAATA+TGG + chr7_2:47501807-47501826 None:intergenic 25.0%
!!! GTTTTGATTCAAACAAAGAA+TGG - chr7_2:47501931-47501950 Msa1060020:CDS 25.0%
! AAAGACATTATTATTGGAGA+AGG - chr7_2:47502180-47502199 Msa1060020:CDS 25.0%
! ATTATTGAGGAGTTTCTTAA+CGG + chr7_2:47502256-47502275 None:intergenic 25.0%
! AACAAAAACAACAATTGTTG+CGG + chr7_2:47502495-47502514 None:intergenic 25.0%
!!! TTTGTTTTTTCAGCTTTTGT+AGG - chr7_2:47502509-47502528 Msa1060020:CDS 25.0%
!!! TTGTTTTTTCAGCTTTTGTA+GGG - chr7_2:47502510-47502529 Msa1060020:CDS 25.0%
!! GTTTCTCATTGAATTTTTGT+TGG + chr7_2:47502557-47502576 None:intergenic 25.0%
! AAAAAAACAATGAATCGTTG+TGG + chr7_2:47502785-47502804 None:intergenic 25.0%
!!! TTGAGTTGAAAAATGGAAAA+TGG + chr7_2:47502856-47502875 None:intergenic 25.0%
! TTAATGGTTCTTTATAGCTT+AGG - chr7_2:47503457-47503476 Msa1060020:CDS 25.0%
! CAATTAGTGGTATAGAAAAT+TGG + chr7_2:47503499-47503518 None:intergenic 25.0%
!! CAATTTTCTATACCACTAAT+TGG - chr7_2:47503497-47503516 Msa1060020:intron 25.0%
AAAATGCAAGAAGATATCGT+CGG + chr7_2:47500654-47500673 None:intergenic 30.0%
TTATTATGATACTGACAGTG+AGG - chr7_2:47500761-47500780 Msa1060020:CDS 30.0%
AAGATTGATGAAGGTAAACT+AGG - chr7_2:47501061-47501080 Msa1060020:CDS 30.0%
! TTTATGCTTGATTAGTTGGA+AGG - chr7_2:47501240-47501259 Msa1060020:intron 30.0%
TAACAAAAGAGGGAGATAAA+TGG + chr7_2:47501300-47501319 None:intergenic 30.0%
CATTTCCAGATAACAAAAGA+GGG + chr7_2:47501310-47501329 None:intergenic 30.0%
TCATTTCCAGATAACAAAAG+AGG + chr7_2:47501311-47501330 None:intergenic 30.0%
GAGAAACTTAATCATACATC+TGG + chr7_2:47501422-47501441 None:intergenic 30.0%
ATCGGAGTTGAAAAATTAGA+AGG + chr7_2:47501577-47501596 None:intergenic 30.0%
!!! ATGTTTTTGGATTGAAAGCA+TGG - chr7_2:47501665-47501684 Msa1060020:intron 30.0%
!!! TGTTTTTGGATTGAAAGCAT+GGG - chr7_2:47501666-47501685 Msa1060020:intron 30.0%
! ATTGAAAGCATGGGTATTAA+TGG - chr7_2:47501675-47501694 Msa1060020:intron 30.0%
! TTGAAAGCATGGGTATTAAT+GGG - chr7_2:47501676-47501695 Msa1060020:intron 30.0%
GTTCATTATAATCATCCTTG+TGG - chr7_2:47501714-47501733 Msa1060020:intron 30.0%
GAAATATTTATAGCACCACA+AGG + chr7_2:47501732-47501751 None:intergenic 30.0%
! CTCATAAAGGAACAATTTTG+CGG + chr7_2:47501874-47501893 None:intergenic 30.0%
TTGAGTGATAAGTTTAGTGA+CGG - chr7_2:47501895-47501914 Msa1060020:intron 30.0%
! AATGTCTTTTGCAAACCTAT+TGG + chr7_2:47502169-47502188 None:intergenic 30.0%
AATCACACCGTTATAAAACT+TGG + chr7_2:47502343-47502362 None:intergenic 30.0%
!! ACTATGTTTGTTGTAGCAAA+AGG - chr7_2:47502417-47502436 Msa1060020:intron 30.0%
! TTGGCATTTTCCTAAGAAAA+GGG + chr7_2:47502599-47502618 None:intergenic 30.0%
! TTTGGCATTTTCCTAAGAAA+AGG + chr7_2:47502600-47502619 None:intergenic 30.0%
!! GTTTTAAACTTAGCTCATCA+TGG + chr7_2:47502635-47502654 None:intergenic 30.0%
! AGTGTTGAAAATGAATGAAG+CGG + chr7_2:47502712-47502731 None:intergenic 30.0%
TCTTGGATACTTCTAATGTT+TGG - chr7_2:47502826-47502845 Msa1060020:intron 30.0%
!! CTTGAGTTTGAGTTGAAAAA+TGG + chr7_2:47502863-47502882 None:intergenic 30.0%
!! CATTTTTCAACTCAAACTCA+AGG - chr7_2:47502861-47502880 Msa1060020:intron 30.0%
ACTTTGAGTACATTCATTCA+TGG + chr7_2:47502916-47502935 None:intergenic 30.0%
AAAACTAAAGAGCCAAATCT+TGG - chr7_2:47503041-47503060 Msa1060020:intron 30.0%
CTGAAACTAATACCAAGATT+TGG + chr7_2:47503056-47503075 None:intergenic 30.0%
! CTATTGTTTACTTGAGTTGT+AGG + chr7_2:47503236-47503255 None:intergenic 30.0%
AGGTTGTGAATAACTGTAAA+AGG - chr7_2:47503305-47503324 Msa1060020:intron 30.0%
GGTTGTGAATAACTGTAAAA+GGG - chr7_2:47503306-47503325 Msa1060020:intron 30.0%
CTGGGAAAAATTCAAATGAT+GGG - chr7_2:47503404-47503423 Msa1060020:CDS 30.0%
TGGGAAAAATTCAAATGATG+GGG - chr7_2:47503405-47503424 Msa1060020:CDS 30.0%
AAGAAGAAGCAAATCATCCT+TGG - chr7_2:47500505-47500524 Msa1060020:CDS 35.0%
AGAAGAAGCAAATCATCCTT+GGG - chr7_2:47500506-47500525 Msa1060020:CDS 35.0%
GGTGAAAAATCCACTGAAAA+TGG - chr7_2:47500527-47500546 Msa1060020:intron 35.0%
GAAAAATCCACTGAAAATGG+AGG - chr7_2:47500530-47500549 Msa1060020:intron 35.0%
!!! AGCATTTTGTGTTAGCTCTA+AGG - chr7_2:47500571-47500590 Msa1060020:intron 35.0%
!!! GCATTTTGTGTTAGCTCTAA+GGG - chr7_2:47500572-47500591 Msa1060020:intron 35.0%
!! TTAGCTCTAAGGGTATTTGA+AGG - chr7_2:47500582-47500601 Msa1060020:intron 35.0%
!! TTTAATACTTGGCTTTGAGC+AGG + chr7_2:47500612-47500631 None:intergenic 35.0%
CATCATCACTCATATCATCT+TGG + chr7_2:47500725-47500744 None:intergenic 35.0%
GAGTAACACATTTACCTTAG+TGG + chr7_2:47500856-47500875 None:intergenic 35.0%
!! TTTCAGGTTGATCATACTCA+AGG - chr7_2:47500895-47500914 Msa1060020:intron 35.0%
CAACAATATATTGATCCCCT+TGG + chr7_2:47500921-47500940 None:intergenic 35.0%
CAATATATTGTTGCACCCAT+AGG - chr7_2:47500928-47500947 Msa1060020:intron 35.0%
CAACAAGAACAGGAAGATAA+TGG - chr7_2:47501037-47501056 Msa1060020:CDS 35.0%
! GATAATGGCAAGATTGATGA+AGG - chr7_2:47501052-47501071 Msa1060020:CDS 35.0%
!! TATCTCCCTCTTTTGTTATC+TGG - chr7_2:47501302-47501321 Msa1060020:CDS 35.0%
ATTTGCTTGGTTGAGAAGTT+TGG - chr7_2:47501519-47501538 Msa1060020:intron 35.0%
ATGGCATCTGATCTAAATTC+AGG - chr7_2:47501625-47501644 Msa1060020:intron 35.0%
TGGCATCTGATCTAAATTCA+GGG - chr7_2:47501626-47501645 Msa1060020:intron 35.0%
ATGGGTATTAATGGGAATAG+TGG - chr7_2:47501684-47501703 Msa1060020:intron 35.0%
GTATTAATGGGAATAGTGGT+TGG - chr7_2:47501688-47501707 Msa1060020:intron 35.0%
TTAAGAAAGAGGTCTAGAAG+AGG - chr7_2:47501757-47501776 Msa1060020:intron 35.0%
CTTATCACTCAAGCTCATAA+AGG + chr7_2:47501887-47501906 None:intergenic 35.0%
GGAGATAATAGTAGTCAATC+AGG - chr7_2:47501952-47501971 Msa1060020:CDS 35.0%
CGTTTAGAGAAAGATCTGAA+TGG - chr7_2:47501985-47502004 Msa1060020:CDS 35.0%
GACATTATTATTGGAGAAGG+TGG - chr7_2:47502183-47502202 Msa1060020:CDS 35.0%
!! AGGCTGCAATGAAAGTATTA+AGG + chr7_2:47502295-47502314 None:intergenic 35.0%
!! TTCCTATTTCTAGAGCATCA+TGG - chr7_2:47502362-47502381 Msa1060020:intron 35.0%
ATGAGAAACCTCTTTAACAC+TGG - chr7_2:47502568-47502587 Msa1060020:intron 35.0%
TAGGAAAATGCCAAAGATAG+AGG - chr7_2:47502605-47502624 Msa1060020:intron 35.0%
ATCGTTGTGGTATAAGGAAA+TGG + chr7_2:47502772-47502791 None:intergenic 35.0%
CAATGAATCGTTGTGGTATA+AGG + chr7_2:47502778-47502797 None:intergenic 35.0%
! TTTTCAACTCAAACTCAAGG+TGG - chr7_2:47502864-47502883 Msa1060020:intron 35.0%
ATGTATAAGAGGTGGCAATA+AGG + chr7_2:47503140-47503159 None:intergenic 35.0%
GTATCTCGTTCATGTATAAG+AGG + chr7_2:47503151-47503170 None:intergenic 35.0%
TGTGAATAACTGTAAAAGGG+TGG - chr7_2:47503309-47503328 Msa1060020:intron 35.0%
AATAACTGTAAAAGGGTGGT+AGG - chr7_2:47503313-47503332 Msa1060020:intron 35.0%
AAATCTCAAATTCCCTGCAT+CGG + chr7_2:47503374-47503393 None:intergenic 35.0%
! CATTTGAATTTTTCCCAGCA+AGG + chr7_2:47503402-47503421 None:intergenic 35.0%
GCTGGGAAAAATTCAAATGA+TGG - chr7_2:47503403-47503422 Msa1060020:CDS 35.0%
GGGAAAAATTCAAATGATGG+GGG - chr7_2:47503406-47503425 Msa1060020:CDS 35.0%
ATACCACTAATTGGCAAAAC+AGG - chr7_2:47503506-47503525 Msa1060020:intron 35.0%
! ATACCTGTTTTGCCAATTAG+TGG + chr7_2:47503512-47503531 None:intergenic 35.0%
TTCTGGCAGTGAAAGAAAAT+GGG - chr7_2:47503679-47503698 Msa1060020:CDS 35.0%
!! TTCAGTGGATTTTTCACCCA+AGG + chr7_2:47500525-47500544 None:intergenic 40.0%
AATCCACTGAAAATGGAGGT+TGG - chr7_2:47500534-47500553 Msa1060020:intron 40.0%
ATCCACTGAAAATGGAGGTT+GGG - chr7_2:47500535-47500554 Msa1060020:intron 40.0%
! TTTATAGGTGAAGAGTGTGC+TGG - chr7_2:47500671-47500690 Msa1060020:CDS 40.0%
CTGAAAGACATGAACCACTA+AGG - chr7_2:47500839-47500858 Msa1060020:CDS 40.0%
TTGATCATACTCAAGGCCAA+GGG - chr7_2:47500902-47500921 Msa1060020:intron 40.0%
GACAGAGAAACAACAAGAAC+AGG - chr7_2:47501027-47501046 Msa1060020:CDS 40.0%
!! TTAGGAGCATATCGGCTTAT+AGG - chr7_2:47502037-47502056 Msa1060020:intron 40.0%
TAACCAAGGTGAGAGAATTC+AGG + chr7_2:47502108-47502127 None:intergenic 40.0%
TGAATTCTCTCACCTTGGTT+AGG - chr7_2:47502107-47502126 Msa1060020:intron 40.0%
GAATTCTCTCACCTTGGTTA+GGG - chr7_2:47502108-47502127 Msa1060020:intron 40.0%
! ACCTATTGGTTGCAAGTTCA+AGG + chr7_2:47502155-47502174 None:intergenic 40.0%
GGTTATGAAGTTGTCTATCG+AGG - chr7_2:47502204-47502223 Msa1060020:CDS 40.0%
ATCGAGGTCAACTTATCAAC+AGG - chr7_2:47502220-47502239 Msa1060020:CDS 40.0%
ACTTATCAACAGGAACCTTG+TGG - chr7_2:47502230-47502249 Msa1060020:CDS 40.0%
!! CACCATGATGCTCTAGAAAT+AGG + chr7_2:47502367-47502386 None:intergenic 40.0%
! ACTGGTGTTTCCCTTTTCTT+AGG - chr7_2:47502586-47502605 Msa1060020:intron 40.0%
TCATGGCATTCCTCTATCTT+TGG + chr7_2:47502618-47502637 None:intergenic 40.0%
GAACTCTTCATTCCTGCTAT+CGG + chr7_2:47502666-47502685 None:intergenic 40.0%
ATGAAGCGGTTGAGATTGAA+AGG + chr7_2:47502698-47502717 None:intergenic 40.0%
GAAAAACTGAGCTGCTCATA+AGG + chr7_2:47503109-47503128 None:intergenic 40.0%
ATAAGAGGTGGCAATAAGGA+TGG + chr7_2:47503136-47503155 None:intergenic 40.0%
TCTCGTTCATGTATAAGAGG+TGG + chr7_2:47503148-47503167 None:intergenic 40.0%
!!! CGATGCAATTTTTGAGTGAG+AGG + chr7_2:47503188-47503207 None:intergenic 40.0%
TAGGACTTGTCACATGCAAA+AGG + chr7_2:47503217-47503236 None:intergenic 40.0%
! TCAAATGATGGGGGTTCTAA+TGG - chr7_2:47503415-47503434 Msa1060020:CDS 40.0%
GTATCAGAACTCTTGCTTCA+AGG - chr7_2:47503528-47503547 Msa1060020:intron 40.0%
TTTCTTTCACTGCCAGAAGT+TGG + chr7_2:47503677-47503696 None:intergenic 40.0%
CTTCTGGCAGTGAAAGAAAA+TGG - chr7_2:47503678-47503697 Msa1060020:CDS 40.0%
ATTATGGGCCTCCTTTCTTC+AGG - chr7_2:47500471-47500490 Msa1060020:CDS 45.0%
TTATGGGCCTCCTTTCTTCA+GGG - chr7_2:47500472-47500491 Msa1060020:CDS 45.0%
! TTCCCAACCTCCATTTTCAG+TGG + chr7_2:47500540-47500559 None:intergenic 45.0%
CCTCATTGTCATCCTCACAA+GGG + chr7_2:47500698-47500717 None:intergenic 45.0%
CCTTGTGAGGATGACAATGA+GGG - chr7_2:47500696-47500715 Msa1060020:CDS 45.0%
TACTGACAGTGAGGTAAGTG+AGG - chr7_2:47500770-47500789 Msa1060020:CDS 45.0%
GTTGATCATACTCAAGGCCA+AGG - chr7_2:47500901-47500920 Msa1060020:intron 45.0%
TGATCATACTCAAGGCCAAG+GGG - chr7_2:47500903-47500922 Msa1060020:intron 45.0%
TGTTGCACCCATAGGTGATT+AGG - chr7_2:47500936-47500955 Msa1060020:intron 45.0%
! TTGCGATTTTGCACACACAG+AGG + chr7_2:47501448-47501467 None:intergenic 45.0%
AAAGAGGTCTAGAAGAGGCA+AGG - chr7_2:47501762-47501781 Msa1060020:intron 45.0%
AAGAGGTCTAGAAGAGGCAA+GGG - chr7_2:47501763-47501782 Msa1060020:intron 45.0%
TCTCAGTCAGGTGAAGATAG+CGG - chr7_2:47502009-47502028 Msa1060020:intron 45.0%
AATTCAGGCAGACCAGAACA+CGG + chr7_2:47502093-47502112 None:intergenic 45.0%
GCCTTGAACTTGCAACCAAT+AGG - chr7_2:47502151-47502170 Msa1060020:CDS 45.0%
GGGAAACACCAGTGTTAAAG+AGG + chr7_2:47502579-47502598 None:intergenic 45.0%
!! AAACCTTTAGAGCCGATAGC+AGG - chr7_2:47502651-47502670 Msa1060020:intron 45.0%
!! ATTCCTGCTATCGGCTCTAA+AGG + chr7_2:47502657-47502676 None:intergenic 45.0%
GCGGTTGAGATTGAAAGGTA+GGG + chr7_2:47502693-47502712 None:intergenic 45.0%
AGCGGTTGAGATTGAAAGGT+AGG + chr7_2:47502694-47502713 None:intergenic 45.0%
! GGCTACATGACTTGCACTTA+GGG - chr7_2:47502738-47502757 Msa1060020:intron 45.0%
GAAGGGATGATCATTGCTCT+TGG - chr7_2:47502809-47502828 Msa1060020:intron 45.0%
CTGTTCTGCAGTATCTTGCA+TGG - chr7_2:47503266-47503285 Msa1060020:intron 45.0%
! ATCTTGCATGGTCTCTGAAG+CGG - chr7_2:47503278-47503297 Msa1060020:intron 45.0%
AAAAGGGTGGTAGGTGTGAT+TGG - chr7_2:47503322-47503341 Msa1060020:intron 45.0%
GTGGTAGGTGTGATTGGAAA+AGG - chr7_2:47503328-47503347 Msa1060020:intron 45.0%
CGGCTAACAGTGCATATATG+TGG + chr7_2:47503354-47503373 None:intergenic 45.0%
TTGAGATTTCGAGACCTTGC+TGG - chr7_2:47503385-47503404 Msa1060020:intron 45.0%
TGAGATTTCGAGACCTTGCT+GGG - chr7_2:47503386-47503405 Msa1060020:intron 45.0%
CCACTCTCAACATGATACAG+TGG + chr7_2:47503648-47503667 None:intergenic 45.0%
CCACTGTATCATGTTGAGAG+TGG - chr7_2:47503645-47503664 Msa1060020:CDS 45.0%
TATGGGCCTCCTTTCTTCAG+GGG - chr7_2:47500473-47500492 Msa1060020:CDS 50.0%
CCCTTGTGAGGATGACAATG+AGG - chr7_2:47500695-47500714 Msa1060020:CDS 50.0%
CCCTCATTGTCATCCTCACA+AGG + chr7_2:47500699-47500718 None:intergenic 50.0%
TAGTGACGGCGATTCTCGAA+AGG - chr7_2:47501909-47501928 Msa1060020:CDS 50.0%
GATCTGAATGGCTCTCAGTC+AGG - chr7_2:47501997-47502016 Msa1060020:CDS 50.0%
!! GTGAAGATAGCGGCGGTTTT+AGG - chr7_2:47502019-47502038 Msa1060020:intron 50.0%
!!! CGGCGGTTTTAGGAGCATAT+CGG - chr7_2:47502029-47502048 Msa1060020:intron 50.0%
CTGCCTGAATTCTCTCACCT+TGG - chr7_2:47502102-47502121 Msa1060020:intron 50.0%
TAAACCAGTGGCCCTAACCA+AGG + chr7_2:47502122-47502141 None:intergenic 50.0%
!! AGGGCCACTGGTTTACGTTA+AGG - chr7_2:47502127-47502146 Msa1060020:CDS 50.0%
!! GGGCCACTGGTTTACGTTAA+GGG - chr7_2:47502128-47502147 Msa1060020:CDS 50.0%
!! GGCCACTGGTTTACGTTAAG+GGG - chr7_2:47502129-47502148 Msa1060020:CDS 50.0%
GGAGTTTCTTAACGGCCACA+AGG + chr7_2:47502248-47502267 None:intergenic 50.0%
! GGGCTACATGACTTGCACTT+AGG - chr7_2:47502737-47502756 Msa1060020:intron 50.0%
!! ATGGTCTCTGAAGCGGAGAA+AGG - chr7_2:47503285-47503304 Msa1060020:intron 50.0%
TATGCACTGTTAGCCGATGC+AGG - chr7_2:47503358-47503377 Msa1060020:intron 50.0%
ATGCACTGTTAGCCGATGCA+GGG - chr7_2:47503359-47503378 Msa1060020:intron 50.0%
! ATGATGGGGGTTCTAATGGC+TGG - chr7_2:47503419-47503438 Msa1060020:CDS 50.0%
GAGTGGAGTAGACCAACTTC+TGG - chr7_2:47503662-47503681 Msa1060020:CDS 50.0%
ATGGGCCTCCTTTCTTCAGG+GGG - chr7_2:47500474-47500493 Msa1060020:CDS 55.0%
AGGTCTAGAAGAGGCAAGGG+TGG - chr7_2:47501766-47501785 Msa1060020:intron 55.0%
AAGGGTGGCATGCTTGCTCT+TGG - chr7_2:47501781-47501800 Msa1060020:intron 55.0%
! CAGTCAGGTGAAGATAGCGG+CGG - chr7_2:47502012-47502031 Msa1060020:intron 55.0%
! CACGGTGATGACGCGGATAT+AGG + chr7_2:47502075-47502094 None:intergenic 55.0%
! ACCAGAACACGGTGATGACG+CGG + chr7_2:47502082-47502101 None:intergenic 55.0%
GGCCCCTTAACGTAAACCAG+TGG + chr7_2:47502134-47502153 None:intergenic 55.0%
TGCAGCCCCCTGAAGAAAGG+AGG + chr7_2:47500482-47500501 None:intergenic 60.0%
CACTGCAGCCCCCTGAAGAA+AGG + chr7_2:47500485-47500504 None:intergenic 60.0%
GAGTGTGCTGGACCCTTGTG+AGG - chr7_2:47500683-47500702 Msa1060020:CDS 60.0%
TCCGCGTCATCACCGTGTTC+TGG - chr7_2:47502078-47502097 Msa1060020:intron 60.0%
CTCACCTTGGTTAGGGCCAC+TGG - chr7_2:47502115-47502134 Msa1060020:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 47500465 47503710 47500465 ID=Msa1060020;Name=Msa1060020
chr7_2 mRNA 47500465 47503710 47500465 ID=Msa1060020-mRNA-1;Parent=Msa1060020;Name=Msa1060020-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.4|0.36|0.90|0.8|0.72|11|0|434
chr7_2 exon 47503582 47503710 47503582 ID=Msa1060020-mRNA-1:exon:8592;Parent=Msa1060020-mRNA-1
chr7_2 exon 47503393 47503497 47503393 ID=Msa1060020-mRNA-1:exon:8591;Parent=Msa1060020-mRNA-1
chr7_2 exon 47503226 47503274 47503226 ID=Msa1060020-mRNA-1:exon:8590;Parent=Msa1060020-mRNA-1
chr7_2 exon 47503102 47503143 47503102 ID=Msa1060020-mRNA-1:exon:8589;Parent=Msa1060020-mRNA-1
chr7_2 exon 47502466 47502570 47502466 ID=Msa1060020-mRNA-1:exon:8588;Parent=Msa1060020-mRNA-1
chr7_2 exon 47502117 47502351 47502117 ID=Msa1060020-mRNA-1:exon:8587;Parent=Msa1060020-mRNA-1
chr7_2 exon 47501898 47502026 47501898 ID=Msa1060020-mRNA-1:exon:8586;Parent=Msa1060020-mRNA-1
chr7_2 exon 47501293 47501362 47501293 ID=Msa1060020-mRNA-1:exon:8585;Parent=Msa1060020-mRNA-1
chr7_2 exon 47501004 47501105 47501004 ID=Msa1060020-mRNA-1:exon:8584;Parent=Msa1060020-mRNA-1
chr7_2 exon 47500626 47500898 47500626 ID=Msa1060020-mRNA-1:exon:8583;Parent=Msa1060020-mRNA-1
chr7_2 exon 47500465 47500530 47500465 ID=Msa1060020-mRNA-1:exon:8582;Parent=Msa1060020-mRNA-1
chr7_2 CDS 47503582 47503710 47503582 ID=Msa1060020-mRNA-1:cds;Parent=Msa1060020-mRNA-1
chr7_2 CDS 47503393 47503497 47503393 ID=Msa1060020-mRNA-1:cds;Parent=Msa1060020-mRNA-1
chr7_2 CDS 47503226 47503274 47503226 ID=Msa1060020-mRNA-1:cds;Parent=Msa1060020-mRNA-1
chr7_2 CDS 47503102 47503143 47503102 ID=Msa1060020-mRNA-1:cds;Parent=Msa1060020-mRNA-1
chr7_2 CDS 47502466 47502570 47502466 ID=Msa1060020-mRNA-1:cds;Parent=Msa1060020-mRNA-1
chr7_2 CDS 47502117 47502351 47502117 ID=Msa1060020-mRNA-1:cds;Parent=Msa1060020-mRNA-1
chr7_2 CDS 47501898 47502026 47501898 ID=Msa1060020-mRNA-1:cds;Parent=Msa1060020-mRNA-1
chr7_2 CDS 47501293 47501362 47501293 ID=Msa1060020-mRNA-1:cds;Parent=Msa1060020-mRNA-1
chr7_2 CDS 47501004 47501105 47501004 ID=Msa1060020-mRNA-1:cds;Parent=Msa1060020-mRNA-1
chr7_2 CDS 47500626 47500898 47500626 ID=Msa1060020-mRNA-1:cds;Parent=Msa1060020-mRNA-1
chr7_2 CDS 47500465 47500530 47500465 ID=Msa1060020-mRNA-1:cds;Parent=Msa1060020-mRNA-1
Gene Sequence

>Msa1060020

CATCGGATTATGGGCCTCCTTTCTTCAGGGGGCTGCAGTGAAGAAGAAGCAAATCATCCTTGGGTGAAAAATCCACTGAAAATGGAGGTTGGGAATGTAAACAACAAGCATTTTGTGTTAGCTCTAAGGGTGAAGAGTGTGCTGGACCCTTGTGAGGATGACAATGAGGGACTCCAAGATGATATGAGTGATGATGAAATGCAGAATAATGATTATTATGATACTGACAGTGAGGTTGATCATACTCAAGGCCAAGGGGATCAATATATTGTTGCACCCATAGAGAAACAACAAGAACAGGAAGATAATGGCAAGATTGATGAAGATTTATTTGACAACAACAAAATGGCATCTGATCTAAATTCAGGGTTGTCAAAGAAAACAAATGTTTTTGGATTGAAAGCATGGGTATTAATGGGAATAGTGGTTGAAGAGATCAAAGAAATTAGTGTCGATCAAGTTTCATCGAATAATCATCCGCAAAATTGTTCCTTTATGAGCTTGAGTGATAAGTTTAGTGACGGCGATTCTCGAAAGGTTTTGATTCAAACAAAGAATGGAGATAATAGTAGTCAATCAGGCTCATTTAATCGTTTAGAGAAAGATCTGAATGGCTCTCAGTCAGGTGAAGATAGCGGCGGTTTTAGGAGCATATCGGCTTATAGGGGCCTTGAACTTGCAACCAATAGGTTTGCAAAAGACATTATTATTGGAGAAGGTGGTTATGAAGTTGTCTATCGAGGTCAACTTATCAACAGGAACCTTGTGGCCGTTAAGAAACTCCTCAATAATTTGGATGATCATTGCTCTTGGATACTTCTAATGTTTGGTTGTCCATTTTCCATTTTTCAACTCAAACTCAAGTTTCAGAAAGCAAGTTCAGATGATGCTACACTTCAGCCTTATGAGCAGCTCAGTTTTTCATATCCATCCTTATTGCCACCTCTTATACATGAACGAGATACTTATCTTGCATGGTCTCTGAAGCGGAGAAAGGTTGTGAATAACTGTAAAAGGGTGGTAGGTGTGATTGGAAAAGGCCACATATATGCACTGTTAGCCGATGCAGGGAATTTGAGATTTCGAGACCTTGCTGGGAAAAATTCAAATGATGGGGGTTCTAATGGCTGGATTGATGTCATTAATTTAATGGTTCTTTATAGCTTAGGCAATTTGAGTCTCTATCCAATTTTCTATACCACTAATTGGCAAAACAGGTATCAGAACTCTTGCTTCAAGCCACTGTATCATGTTGAGAGTGGAGTAGACCAACTTCTGGCAGTGAAAGAAAATGGGCTCAAATAG

Protein sequence

>Msa1060020

HRIMGLLSSGGCSEEEANHPWVKNPLKMEVGNVNNKHFVLALRVKSVLDPCEDDNEGLQDDMSDDEMQNNDYYDTDSEVDHTQGQGDQYIVAPIEKQQEQEDNGKIDEDLFDNNKMASDLNSGLSKKTNVFGLKAWVLMGIVVEEIKEISVDQVSSNNHPQNCSFMSLSDKFSDGDSRKVLIQTKNGDNSSQSGSFNRLEKDLNGSQSGEDSGGFRSISAYRGLELATNRFAKDIIIGEGGYEVVYRGQLINRNLVAVKKLLNNLDDHCSWILLMFGCPFSIFQLKLKFQKASSDDATLQPYEQLSFSYPSLLPPLIHERDTYLAWSLKRRKVVNNCKRVVGVIGKGHIYALLADAGNLRFRDLAGKNSNDGGSNGWIDVINLMVLYSLGNLSLYPIFYTTNWQNRYQNSCFKPLYHVESGVDQLLAVKENGLK*