Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346180 | XP_013463687.1 | 75.843 | 178 | 17 | 1 | 113 | 264 | 1 | 178 | 1.68e-74 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346180 | sp|F4HRV8|ASY1_ARATH | 54.444 | 90 | 36 | 2 | 8 | 94 | 195 | 282 | 5.23e-23 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346180 | A0A072V7B9 | 75.843 | 178 | 17 | 1 | 113 | 264 | 1 | 178 | 8.01e-75 | 251 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095560 | Msa0346180 | 0.815971 | 7.033016e-52 | -8.615850e-47 |
| Msa0122590 | Msa0346180 | 0.815386 | 9.494492e-52 | -8.615850e-47 |
| Msa0170140 | Msa0346180 | 0.807137 | 5.853475e-50 | -8.615850e-47 |
| Msa0188830 | Msa0346180 | 0.823858 | 1.104670e-53 | -8.615850e-47 |
| Msa0201070 | Msa0346180 | 0.813934 | 1.991076e-51 | -8.615850e-47 |
| Msa0212990 | Msa0346180 | 0.803545 | 3.312727e-49 | -8.615850e-47 |
| Msa0213520 | Msa0346180 | 0.812452 | 4.210428e-51 | -8.615850e-47 |
| Msa0220580 | Msa0346180 | 0.818319 | 2.085948e-52 | -8.615850e-47 |
| Msa0243710 | Msa0346180 | 0.824524 | 7.703241e-54 | -8.615850e-47 |
| Msa0346180 | Msa0376590 | 0.818471 | 1.926836e-52 | -8.615850e-47 |
| Msa0346180 | Msa0380850 | 0.801392 | 9.199382e-49 | -8.615850e-47 |
| Msa0346180 | Msa0426900 | 0.801420 | 9.079244e-49 | -8.615850e-47 |
| Msa0346180 | Msa0436370 | 0.809759 | 1.614285e-50 | -8.615850e-47 |
| Msa0346180 | Msa0484780 | 0.816006 | 6.908716e-52 | -8.615850e-47 |
| Msa0346180 | Msa0490870 | 0.814115 | 1.815481e-51 | -8.615850e-47 |
| Msa0346180 | Msa0503060 | 0.801651 | 8.141346e-49 | -8.615850e-47 |
| Msa0346180 | Msa0516370 | 0.804891 | 1.737590e-49 | -8.615850e-47 |
| Msa0346180 | Msa0536220 | 0.830501 | 2.834929e-55 | -8.615850e-47 |
| Msa0346180 | Msa0538600 | 0.801322 | 9.512420e-49 | -8.615850e-47 |
| Msa0346180 | Msa0572420 | 0.804909 | 1.722290e-49 | -8.615850e-47 |
| Msa0346180 | Msa0572480 | 0.842174 | 3.038347e-58 | -8.615850e-47 |
| Msa0346180 | Msa0610890 | 0.802019 | 6.843343e-49 | -8.615850e-47 |
| Msa0346180 | Msa0657970 | 0.802724 | 4.898432e-49 | -8.615850e-47 |
| Msa0346180 | Msa0760130 | 0.800856 | 1.184600e-48 | -8.615850e-47 |
| Msa0346180 | Msa0761910 | 0.803117 | 4.061490e-49 | -8.615850e-47 |
| Msa0346180 | Msa0828850 | 0.805674 | 1.190883e-49 | -8.615850e-47 |
| Msa0346180 | Msa0927290 | 0.805926 | 1.054391e-49 | -8.615850e-47 |
| Msa0346180 | Msa1059570 | 0.802393 | 5.732373e-49 | -8.615850e-47 |
| Msa0346180 | Msa1060020 | 0.816852 | 4.465816e-52 | -8.615850e-47 |
| Msa0346180 | Msa1075220 | -0.802900 | 4.505019e-49 | -8.615850e-47 |
| Msa0346180 | Msa1082500 | 0.801586 | 8.397613e-49 | -8.615850e-47 |
| Msa0346180 | Msa1084260 | 0.807713 | 4.419263e-50 | -8.615850e-47 |
| Msa0346180 | Msa1085300 | 0.800676 | 1.289161e-48 | -8.615850e-47 |
| Msa0346180 | Msa1239720 | 0.808068 | 3.714430e-50 | -8.615850e-47 |
| Msa0346180 | Msa1291660 | 0.821180 | 4.629660e-53 | -8.615850e-47 |
| Msa0346180 | Msa1314340 | 0.803157 | 3.985299e-49 | -8.615850e-47 |
| Msa0346180 | Msa1379850 | 0.809895 | 1.508875e-50 | -8.615850e-47 |
| Msa0346180 | Msa1392260 | 0.834061 | 3.726467e-56 | -8.615850e-47 |
| Msa0346180 | Msa1410210 | 0.801693 | 7.983653e-49 | -8.615850e-47 |
| Msa0346180 | Msa1420290 | 0.810446 | 1.148203e-50 | -8.615850e-47 |
| Msa0346180 | Msa1429900 | 0.821640 | 3.626526e-53 | -8.615850e-47 |
| Msa0346180 | Msa1451620 | -0.801562 | 8.493282e-49 | -8.615850e-47 |
| Msa0346180 | Msa1454860 | 0.807847 | 4.138959e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346180 | MtrunA17_Chr2g0302631 | 75.843 | 178 | 17 | 1 | 113 | 264 | 1 | 178 | 1.54e-78 | 251 |
| Msa0346180 | MtrunA17_Chr3g0122511 | 94.949 | 99 | 5 | 0 | 8 | 106 | 185 | 283 | 2.86e-60 | 205 |
| Msa0346180 | MtrunA17_Chr1g0203821 | 72.414 | 116 | 27 | 2 | 253 | 363 | 259 | 374 | 5.11e-48 | 167 |
| Msa0346180 | MtrunA17_Chr4g0069251 | 51.124 | 178 | 56 | 4 | 113 | 264 | 1 | 173 | 2.06e-42 | 155 |
| Msa0346180 | MtrunA17_Chr8g0365301 | 94.643 | 56 | 3 | 0 | 308 | 363 | 3 | 58 | 1.42e-29 | 108 |
| Msa0346180 | MtrunA17_Chr4g0047511 | 92.857 | 56 | 4 | 0 | 308 | 363 | 3 | 58 | 3.02e-29 | 108 |
| Msa0346180 | MtrunA17_Chr7g0271451 | 35.263 | 190 | 84 | 6 | 113 | 264 | 1 | 189 | 5.69e-17 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346180 | AT5G52030.1 | 56.780 | 118 | 42 | 3 | 234 | 342 | 112 | 229 | 5.00e-34 | 127 |
| Msa0346180 | AT5G52030.2 | 52.482 | 141 | 52 | 5 | 208 | 339 | 236 | 370 | 5.14e-32 | 125 |
| Msa0346180 | AT1G67370.1 | 54.444 | 90 | 36 | 2 | 8 | 94 | 195 | 282 | 5.32e-24 | 104 |
| Msa0346180 | AT5G18500.2 | 38.806 | 134 | 56 | 7 | 127 | 252 | 33 | 148 | 2.35e-13 | 72.0 |
| Msa0346180 | AT5G18500.5 | 38.806 | 134 | 56 | 7 | 127 | 252 | 33 | 148 | 2.35e-13 | 72.0 |
| Msa0346180 | AT5G18500.4 | 38.806 | 134 | 56 | 7 | 127 | 252 | 33 | 148 | 2.35e-13 | 72.0 |
| Msa0346180 | AT5G18500.1 | 38.806 | 134 | 56 | 7 | 127 | 252 | 33 | 148 | 2.35e-13 | 72.0 |
| Msa0346180 | AT5G18500.3 | 38.806 | 134 | 56 | 7 | 127 | 252 | 33 | 148 | 2.35e-13 | 72.0 |
| Msa0346180 | AT5G18500.6 | 38.806 | 134 | 56 | 7 | 127 | 252 | 33 | 148 | 2.35e-13 | 72.0 |
| Msa0346180 | AT4G32200.1 | 58.182 | 55 | 20 | 1 | 7 | 58 | 214 | 268 | 1.25e-12 | 70.1 |
| Msa0346180 | AT4G32200.2 | 58.182 | 55 | 20 | 1 | 7 | 58 | 214 | 268 | 1.33e-12 | 70.1 |
Find 81 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGATGTCATTAATTTAA+TGG | 0.159794 | 3_1:+6136060 | Msa0346180:CDS |
| AGGCTGTGAATAACTGTAAA+AGG | 0.213580 | 3_1:+6135924 | Msa0346180:CDS |
| ATTATGGGCCTCCTTTCTTC+AGG | 0.236669 | 3_1:+6133079 | None:intergenic |
| CTTCTGGCAGTGAAAGAAAA+TGG | 0.242628 | 3_1:+6136296 | Msa0346180:CDS |
| TTAGGAGCATATCGGCTTAT+AGG | 0.259018 | 3_1:+6134652 | Msa0346180:CDS |
| TTTATTTGACAACAACAAAA+TGG | 0.295901 | 3_1:+6134221 | Msa0346180:CDS |
| CAATTAGTGGTATAGAAAAT+TGG | 0.317060 | 3_1:-6136115 | None:intergenic |
| ATGGCATCTGATCTAAATTC+AGG | 0.325194 | 3_1:+6134240 | Msa0346180:CDS |
| CTTCTGAAATAGATAGAATA+TGG | 0.354364 | 3_1:-6134419 | None:intergenic |
| TCCGCGTCATCACCGTGTTC+TGG | 0.360579 | 3_1:+6134693 | Msa0346180:CDS |
| TTATGGGCCTCCTTTCTTCA+GGG | 0.388519 | 3_1:+6133080 | None:intergenic |
| TTGAGATTTCGAGACCTTGC+TGG | 0.392448 | 3_1:+6136004 | Msa0346180:CDS |
| CACGGTGATGACGCGGATAT+AGG | 0.395592 | 3_1:-6134687 | None:intergenic |
| CTTATCACTCAAGCTCATAA+AGG | 0.409710 | 3_1:-6134499 | None:intergenic |
| CAACAAGAACAGGAAGATAA+TGG | 0.409972 | 3_1:+6133645 | Msa0346180:CDS |
| GACAGAGAAACAACAAGAAC+AGG | 0.411951 | 3_1:+6133635 | Msa0346180:intron |
| ATACCACTAATTGGCAAAAC+AGG | 0.418276 | 3_1:+6136125 | Msa0346180:CDS |
| TTAATGGTTCTTTATAGCTT+AGG | 0.424486 | 3_1:+6136076 | Msa0346180:CDS |
| ATCCACTGAAAATGGAGGTT+GGG | 0.427292 | 3_1:+6133143 | Msa0346180:CDS |
| GTATCAGAACTCTTGCTTCA+AGG | 0.434040 | 3_1:+6136147 | Msa0346180:CDS |
| AAGGGTGGCATGCTTCCTCT+TGG | 0.440256 | 3_1:+6134396 | Msa0346180:CDS |
| TAACCAAGGTGAGAGAATTC+AGG | 0.440604 | 3_1:-6134720 | None:intergenic |
| AAAAGGGTGGTAGGTGTGAT+TGG | 0.444853 | 3_1:+6135941 | Msa0346180:CDS |
| CGCCGCTATCTTCACCTGAC+TGG | 0.445547 | 3_1:-6134626 | None:intergenic |
| CTGCCTGAATTCTCTCACCT+TGG | 0.446217 | 3_1:+6134717 | Msa0346180:CDS |
| GGAGATAATAGTAGTCAATC+AGG | 0.447697 | 3_1:+6134567 | Msa0346180:CDS |
| AAGAAGAAGCAAATCATCCT+TGG | 0.454004 | 3_1:+6133113 | Msa0346180:CDS |
| CATCATCACTCATATCATCT+TGG | 0.455480 | 3_1:-6133330 | None:intergenic |
| TTCTGGCAGTGAAAGAAAAT+GGG | 0.457408 | 3_1:+6136297 | Msa0346180:CDS |
| ATGTATAAGAGGTGGCAATA+AGG | 0.459297 | 3_1:-6135756 | None:intergenic |
| GAGTGGAGTAGACCAACTTC+TGG | 0.463098 | 3_1:+6136280 | Msa0346180:CDS |
| TATACACTGTTAGCTGATGC+AGG | 0.468744 | 3_1:+6135977 | Msa0346180:CDS |
| TTTCTTTCACTGCCAGAAGT+TGG | 0.480033 | 3_1:-6136292 | None:intergenic |
| GATCTGAATGGCTCCCAGTC+AGG | 0.490400 | 3_1:+6134612 | Msa0346180:CDS |
| GTGGTAGGTGTGATTGGAAA+AGG | 0.496641 | 3_1:+6135947 | Msa0346180:CDS |
| AATCCACTGAAAATGGAGGT+TGG | 0.506050 | 3_1:+6133142 | Msa0346180:CDS |
| TGGCATCTGATCTAAATTCA+GGG | 0.510805 | 3_1:+6134241 | Msa0346180:CDS |
| CAACAATATATTGATCCCCT+TGG | 0.510967 | 3_1:-6133526 | None:intergenic |
| ATGGTCTTTGAAGCGGAGAA+AGG | 0.515533 | 3_1:+6135904 | Msa0346180:CDS |
| CTGTTCTGCAGTATCTTGCA+TGG | 0.516086 | 3_1:+6135885 | Msa0346180:intron |
| CAATATATTGTTGCACCCAT+AGG | 0.519632 | 3_1:+6133536 | Msa0346180:CDS |
| GATAATGGCAAGATTGATGA+AGG | 0.521464 | 3_1:+6133660 | Msa0346180:CDS |
| GTATCTCGTTCATGTATAAG+AGG | 0.530170 | 3_1:-6135767 | None:intergenic |
| TGAGATTTCGAGACCTTGCT+GGG | 0.531713 | 3_1:+6136005 | Msa0346180:CDS |
| ATGGGCCTCCTTTCTTCAGG+GGG | 0.533618 | 3_1:+6133082 | Msa0346180:CDS |
| AGAAGAAGCAAATCATCCTT+GGG | 0.537678 | 3_1:+6133114 | Msa0346180:CDS |
| TAGTGACGGCGATTCTCGAA+AGG | 0.537864 | 3_1:+6134524 | Msa0346180:CDS |
| TTTCAGGTTGATCATACTCA+AGG | 0.538633 | 3_1:+6133503 | Msa0346180:intron |
| CCCTCATTGTCATCCTCACA+AGG | 0.538991 | 3_1:-6133304 | None:intergenic |
| GGCTGTGAATAACTGTAAAA+GGG | 0.547115 | 3_1:+6135925 | Msa0346180:CDS |
| TTTATAGGTGAAGAGTGTGC+TGG | 0.547236 | 3_1:+6133279 | Msa0346180:intron |
| GCCGCTATCTTCACCTGACT+GGG | 0.552059 | 3_1:-6134625 | None:intergenic |
| ATAAGAGGTGGCAATAAGGA+TGG | 0.555215 | 3_1:-6135752 | None:intergenic |
| CAGCTAACAGTGTATATATG+TGG | 0.558226 | 3_1:-6135970 | None:intergenic |
| TATGGGCCTCCTTTCTTCAG+GGG | 0.560733 | 3_1:+6133081 | None:intergenic |
| GTTGATCATACTCAAGGCCA+AGG | 0.565008 | 3_1:+6133509 | Msa0346180:CDS |
| ATCTTGCATGGTCTTTGAAG+CGG | 0.565596 | 3_1:+6135897 | Msa0346180:CDS |
| AAGAGGTCTAGAAGAGGCAA+GGG | 0.574521 | 3_1:+6134378 | Msa0346180:intron |
| AGGTCTAGAAGAGGCAAGGG+TGG | 0.577942 | 3_1:+6134381 | Msa0346180:CDS |
| AAAGAGGTCTAGAAGAGGCA+AGG | 0.580103 | 3_1:+6134377 | Msa0346180:intron |
| TTGAGTGATAAGTTTAGTGA+CGG | 0.597655 | 3_1:+6134510 | Msa0346180:CDS |
| CGTTTAAAGAAAGATCTGAA+TGG | 0.598908 | 3_1:+6134600 | Msa0346180:CDS |
| CCACTGTATCATGTTGAGAG+TGG | 0.610898 | 3_1:+6136263 | Msa0346180:CDS |
| AATAACTGTAAAAGGGTGGT+AGG | 0.617141 | 3_1:+6135932 | Msa0346180:CDS |
| ACCAGAACACGGTGATGACG+CGG | 0.622446 | 3_1:-6134694 | None:intergenic |
| TTAAGAAAGAGGTCTAGAAG+AGG | 0.622640 | 3_1:+6134372 | Msa0346180:intron |
| ATACACTGTTAGCTGATGCA+GGG | 0.635662 | 3_1:+6135978 | Msa0346180:CDS |
| TCTCGTTCATGTATAAGAGG+TGG | 0.648526 | 3_1:-6135764 | None:intergenic |
| TTGATCATACTCAAGGCCAA+GGG | 0.654884 | 3_1:+6133510 | Msa0346180:CDS |
| CCTTGTGAGGATGACAATGA+GGG | 0.661913 | 3_1:+6133304 | Msa0346180:CDS |
| TCCCAGTCAGGTGAAGATAG+CGG | 0.663047 | 3_1:+6134624 | Msa0346180:CDS |
| GAGTGTGCTGGACCCTTGTG+AGG | 0.663564 | 3_1:+6133291 | Msa0346180:CDS |
| ATAGATAGAATATGGCCAAG+AGG | 0.665254 | 3_1:-6134411 | None:intergenic |
| CCACTCTCAACATGATACAG+TGG | 0.672362 | 3_1:-6136263 | None:intergenic |
| CCCTTGTGAGGATGACAATG+AGG | 0.675744 | 3_1:+6133303 | Msa0346180:CDS |
| TGTGAATAACTGTAAAAGGG+TGG | 0.676596 | 3_1:+6135928 | Msa0346180:CDS |
| CAGTCAGGTGAAGATAGCGG+CGG | 0.688714 | 3_1:+6134627 | Msa0346180:CDS |
| TGATCATACTCAAGGCCAAG+GGG | 0.695983 | 3_1:+6133511 | Msa0346180:CDS |
| AATTCAGGCAGACCAGAACA+CGG | 0.704496 | 3_1:-6134705 | None:intergenic |
| CCTCATTGTCATCCTCACAA+GGG | 0.708392 | 3_1:-6133303 | None:intergenic |
| TTATTATGATACTGACAGTG+AGG | 0.740460 | 3_1:+6133369 | Msa0346180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAAAAATATTTAATACT+TGG | - | chr3_1:6133231-6133250 | None:intergenic | 10.0% |
| !! | AATTCAAAACTAAAAAATAA+AGG | - | chr3_1:6134930-6134949 | None:intergenic | 10.0% |
| !!! | AACTTGTTAAAATAATATAC+TGG | - | chr3_1:6133609-6133628 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTTTTTTTGTTGA+AGG | + | chr3_1:6135410-6135429 | Msa0346180:intron | 15.0% |
| !!! | TGTTTTTTTTTTTTGTTGAA+GGG | + | chr3_1:6135411-6135430 | Msa0346180:intron | 15.0% |
| !!! | TATGTTTTCTTTAAAATTGT+TGG | + | chr3_1:6136204-6136223 | Msa0346180:intron | 15.0% |
| !!! | TTTGAGATTTTACAATTTTC+AGG | + | chr3_1:6133487-6133506 | Msa0346180:intron | 20.0% |
| !! | CTCAGAAAATAAAATATACT+TGG | + | chr3_1:6133807-6133826 | Msa0346180:intron | 20.0% |
| !!! | TTGTTACTGAAATTTTTGAA+TGG | + | chr3_1:6134011-6134030 | Msa0346180:intron | 20.0% |
| !! | TCAAATAAATCTGCAAATAT+CGG | - | chr3_1:6134210-6134229 | None:intergenic | 20.0% |
| !! | TTTATTTGACAACAACAAAA+TGG | + | chr3_1:6134221-6134240 | Msa0346180:CDS | 20.0% |
| !!! | TCAAAGAAAACAAATGTTTT+TGG | + | chr3_1:6134267-6134286 | Msa0346180:CDS | 20.0% |
| !! | TTTGCAAAAGACATTATTAT+TGG | + | chr3_1:6134789-6134808 | Msa0346180:intron | 20.0% |
| !! | TAATAGCTTACAAATTATTG+AGG | - | chr3_1:6134884-6134903 | None:intergenic | 20.0% |
| !!! | TTATGAACCAAGTTTTATAA+CGG | + | chr3_1:6134948-6134967 | Msa0346180:intron | 20.0% |
| !! | AATGTATGATATTAACAAAC+AGG | - | chr3_1:6135012-6135031 | None:intergenic | 20.0% |
| !!! | GTCATAAACTATTTGTTTTT+TGG | - | chr3_1:6135060-6135079 | None:intergenic | 20.0% |
| !!! | TATGACAAGTTTTAAATTGA+AGG | + | chr3_1:6135074-6135093 | Msa0346180:intron | 20.0% |
| !!! | ATTCATTTTCAACACTTTTA+AGG | + | chr3_1:6135331-6135350 | Msa0346180:intron | 20.0% |
| !!! | TTCATTTTCAACACTTTTAA+GGG | + | chr3_1:6135332-6135351 | Msa0346180:intron | 20.0% |
| !! | AAAAAAACAATGAATTGTTG+TGG | - | chr3_1:6135400-6135419 | None:intergenic | 20.0% |
| !! | ATATATAAAACTCTCAACTA+AGG | + | chr3_1:6135570-6135589 | Msa0346180:intron | 20.0% |
| !! | GATTGATGTCATTAATTTAA+TGG | + | chr3_1:6136060-6136079 | Msa0346180:CDS | 20.0% |
| !! | GATATCTTCTTGCATTTTAT+AGG | + | chr3_1:6133264-6133283 | Msa0346180:intron | 25.0% |
| ! | AAATAATCCTAATCACCTAT+GGG | - | chr3_1:6133554-6133573 | None:intergenic | 25.0% |
| ! | AAAATAATCCTAATCACCTA+TGG | - | chr3_1:6133555-6133574 | None:intergenic | 25.0% |
| !! | AAAACAATTTTATGTTCGAG+AGG | - | chr3_1:6133701-6133720 | None:intergenic | 25.0% |
| ! | AAAATAACTCTATTGTGACT+TGG | - | chr3_1:6133784-6133803 | None:intergenic | 25.0% |
| ! | TTCATTTATGCTTGATTAGT+TGG | + | chr3_1:6133851-6133870 | Msa0346180:intron | 25.0% |
| ! | TTTGAACAAAAACTGCATTA+TGG | - | chr3_1:6133892-6133911 | None:intergenic | 25.0% |
| ! | GAGAAACTTAATCATACATT+TGG | - | chr3_1:6134037-6134056 | None:intergenic | 25.0% |
| !! | ATTGTTTGTGTAAATTTGCT+TGG | + | chr3_1:6134121-6134140 | Msa0346180:intron | 25.0% |
| !!! | TATTTCTTGCTTTAAGAAAG+AGG | + | chr3_1:6134361-6134380 | Msa0346180:intron | 25.0% |
| !!! | CTTCTGAAATAGATAGAATA+TGG | - | chr3_1:6134422-6134441 | None:intergenic | 25.0% |
| !!! | GTTTTGATTCAAACAAAGAA+TGG | + | chr3_1:6134546-6134565 | Msa0346180:CDS | 25.0% |
| ! | AAAGACATTATTATTGGAGA+AGG | + | chr3_1:6134795-6134814 | Msa0346180:intron | 25.0% |
| ! | ATTATTGAGGAGTTTCTTAA+CGG | - | chr3_1:6134871-6134890 | None:intergenic | 25.0% |
| ! | AACAAAAACAACAATTGTTG+CGG | - | chr3_1:6135110-6135129 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTCAGCTTTTGT+AGG | + | chr3_1:6135124-6135143 | Msa0346180:intron | 25.0% |
| !!! | TTGTTTTTTCAGCTTTTGTA+GGG | + | chr3_1:6135125-6135144 | Msa0346180:intron | 25.0% |
| !! | GTTTCTCATTGAATTTTTGT+TGG | - | chr3_1:6135172-6135191 | None:intergenic | 25.0% |
| !!! | TTGAGTTGAAAAATGGAAAA+TGG | - | chr3_1:6135475-6135494 | None:intergenic | 25.0% |
| ! | TTAATGGTTCTTTATAGCTT+AGG | + | chr3_1:6136076-6136095 | Msa0346180:CDS | 25.0% |
| ! | CAATTAGTGGTATAGAAAAT+TGG | - | chr3_1:6136118-6136137 | None:intergenic | 25.0% |
| !! | CAATTTTCTATACCACTAAT+TGG | + | chr3_1:6136116-6136135 | Msa0346180:CDS | 25.0% |
| AAAATGCAAGAAGATATCGT+CGG | - | chr3_1:6133262-6133281 | None:intergenic | 30.0% | |
| TTATTATGATACTGACAGTG+AGG | + | chr3_1:6133369-6133388 | Msa0346180:CDS | 30.0% | |
| AAGATTGATGAAGGTAAACT+AGG | + | chr3_1:6133669-6133688 | Msa0346180:intron | 30.0% | |
| ! | TTTATGCTTGATTAGTTGGA+AGG | + | chr3_1:6133855-6133874 | Msa0346180:intron | 30.0% |
| TAACAAAAGAGGGAGATAAA+TGG | - | chr3_1:6133915-6133934 | None:intergenic | 30.0% | |
| CATTTCCAGATAACAAAAGA+GGG | - | chr3_1:6133925-6133944 | None:intergenic | 30.0% | |
| TCATTTCCAGATAACAAAAG+AGG | - | chr3_1:6133926-6133945 | None:intergenic | 30.0% | |
| ATCGGAGTTGAAAAATTAGA+AGG | - | chr3_1:6134192-6134211 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTGGATTGAAAGCA+TGG | + | chr3_1:6134280-6134299 | Msa0346180:CDS | 30.0% |
| !!! | TGTTTTTGGATTGAAAGCAT+GGG | + | chr3_1:6134281-6134300 | Msa0346180:CDS | 30.0% |
| ! | ATTGAAAGCATGGGTATTAA+TGG | + | chr3_1:6134290-6134309 | Msa0346180:intron | 30.0% |
| ! | TTGAAAGCATGGGTATTAAT+GGG | + | chr3_1:6134291-6134310 | Msa0346180:intron | 30.0% |
| GTTCATTATAATCATCCTTG+TGG | + | chr3_1:6134329-6134348 | Msa0346180:intron | 30.0% | |
| GAAATATTTATAGCACCACA+AGG | - | chr3_1:6134347-6134366 | None:intergenic | 30.0% | |
| ! | CTCATAAAGGAACAATTTTG+CGG | - | chr3_1:6134489-6134508 | None:intergenic | 30.0% |
| TTGAGTGATAAGTTTAGTGA+CGG | + | chr3_1:6134510-6134529 | Msa0346180:CDS | 30.0% | |
| CGTTTAAAGAAAGATCTGAA+TGG | + | chr3_1:6134600-6134619 | Msa0346180:CDS | 30.0% | |
| ! | AATGTCTTTTGCAAACCTAT+TGG | - | chr3_1:6134784-6134803 | None:intergenic | 30.0% |
| !! | ACTATGTTTGTTGTAGCAAA+AGG | + | chr3_1:6135032-6135051 | Msa0346180:intron | 30.0% |
| ! | TTGGCATTTTCCTAAGAAAA+GGG | - | chr3_1:6135214-6135233 | None:intergenic | 30.0% |
| ! | TTTGGCATTTTCCTAAGAAA+AGG | - | chr3_1:6135215-6135234 | None:intergenic | 30.0% |
| ! | AGTGTTGAAAATGAATGAAG+CGG | - | chr3_1:6135327-6135346 | None:intergenic | 30.0% |
| ATTGTTGTGGTATAAGGAAA+TGG | - | chr3_1:6135387-6135406 | None:intergenic | 30.0% | |
| CAATGAATTGTTGTGGTATA+AGG | - | chr3_1:6135393-6135412 | None:intergenic | 30.0% | |
| TCTTGGATACTTCTAATGTT+TGG | + | chr3_1:6135445-6135464 | Msa0346180:intron | 30.0% | |
| !! | CTTGAGTTTGAGTTGAAAAA+TGG | - | chr3_1:6135482-6135501 | None:intergenic | 30.0% |
| !! | CATTTTTCAACTCAAACTCA+AGG | + | chr3_1:6135480-6135499 | Msa0346180:intron | 30.0% |
| ACTTTGAGTACATTCATTCA+TGG | - | chr3_1:6135535-6135554 | None:intergenic | 30.0% | |
| AAAACTAAAGAGCCAAATCT+TGG | + | chr3_1:6135660-6135679 | Msa0346180:intron | 30.0% | |
| CTGAAACTAATACCAAGATT+TGG | - | chr3_1:6135675-6135694 | None:intergenic | 30.0% | |
| ! | CTATTGTTTACTTGAGTTGT+AGG | - | chr3_1:6135855-6135874 | None:intergenic | 30.0% |
| CTGGGAAAAATTCAAATGAT+GGG | + | chr3_1:6136023-6136042 | Msa0346180:CDS | 30.0% | |
| TGGGAAAAATTCAAATGATG+GGG | + | chr3_1:6136024-6136043 | Msa0346180:CDS | 30.0% | |
| AAGAAGAAGCAAATCATCCT+TGG | + | chr3_1:6133113-6133132 | Msa0346180:CDS | 35.0% | |
| AGAAGAAGCAAATCATCCTT+GGG | + | chr3_1:6133114-6133133 | Msa0346180:CDS | 35.0% | |
| GGTGAAAAATCCACTGAAAA+TGG | + | chr3_1:6133135-6133154 | Msa0346180:CDS | 35.0% | |
| GAAAAATCCACTGAAAATGG+AGG | + | chr3_1:6133138-6133157 | Msa0346180:CDS | 35.0% | |
| !! | TTTAATACTTGGCTTTGAGC+AGG | - | chr3_1:6133220-6133239 | None:intergenic | 35.0% |
| CATCATCACTCATATCATCT+TGG | - | chr3_1:6133333-6133352 | None:intergenic | 35.0% | |
| GAGTAACACATTTACCTTAG+TGG | - | chr3_1:6133464-6133483 | None:intergenic | 35.0% | |
| !! | TTTCAGGTTGATCATACTCA+AGG | + | chr3_1:6133503-6133522 | Msa0346180:intron | 35.0% |
| CAACAATATATTGATCCCCT+TGG | - | chr3_1:6133529-6133548 | None:intergenic | 35.0% | |
| CAATATATTGTTGCACCCAT+AGG | + | chr3_1:6133536-6133555 | Msa0346180:CDS | 35.0% | |
| CAACAAGAACAGGAAGATAA+TGG | + | chr3_1:6133645-6133664 | Msa0346180:CDS | 35.0% | |
| ! | GATAATGGCAAGATTGATGA+AGG | + | chr3_1:6133660-6133679 | Msa0346180:CDS | 35.0% |
| !! | TATCTCCCTCTTTTGTTATC+TGG | + | chr3_1:6133917-6133936 | Msa0346180:intron | 35.0% |
| ATTTGCTTGGTTGAGAAGTT+TGG | + | chr3_1:6134134-6134153 | Msa0346180:intron | 35.0% | |
| ATGGCATCTGATCTAAATTC+AGG | + | chr3_1:6134240-6134259 | Msa0346180:CDS | 35.0% | |
| TGGCATCTGATCTAAATTCA+GGG | + | chr3_1:6134241-6134260 | Msa0346180:CDS | 35.0% | |
| ATGGGTATTAATGGGAATAG+TGG | + | chr3_1:6134299-6134318 | Msa0346180:intron | 35.0% | |
| GTATTAATGGGAATAGTGGT+TGG | + | chr3_1:6134303-6134322 | Msa0346180:intron | 35.0% | |
| TTAAGAAAGAGGTCTAGAAG+AGG | + | chr3_1:6134372-6134391 | Msa0346180:intron | 35.0% | |
| ATAGATAGAATATGGCCAAG+AGG | - | chr3_1:6134414-6134433 | None:intergenic | 35.0% | |
| CTTATCACTCAAGCTCATAA+AGG | - | chr3_1:6134502-6134521 | None:intergenic | 35.0% | |
| GGAGATAATAGTAGTCAATC+AGG | + | chr3_1:6134567-6134586 | Msa0346180:CDS | 35.0% | |
| GACATTATTATTGGAGAAGG+TGG | + | chr3_1:6134798-6134817 | Msa0346180:intron | 35.0% | |
| GGTTATGAATTTGTCTATCG+AGG | + | chr3_1:6134819-6134838 | Msa0346180:intron | 35.0% | |
| ACTTATCAACAGAAACCTTG+TGG | + | chr3_1:6134845-6134864 | Msa0346180:intron | 35.0% | |
| !! | AGGCTGCAATGAAAGTATTA+AGG | - | chr3_1:6134910-6134929 | None:intergenic | 35.0% |
| AATCGCACCGTTATAAAACT+TGG | - | chr3_1:6134958-6134977 | None:intergenic | 35.0% | |
| !! | TTCCTATTTCTAGAGCATCA+TGG | + | chr3_1:6134977-6134996 | Msa0346180:intron | 35.0% |
| ATGAGAAACCTCTTTAACAC+TGG | + | chr3_1:6135183-6135202 | Msa0346180:intron | 35.0% | |
| TAGGAAAATGCCAAAGATAG+AGG | + | chr3_1:6135220-6135239 | Msa0346180:intron | 35.0% | |
| !! | GTTTTAAACTTAGCCCATCA+TGG | - | chr3_1:6135250-6135269 | None:intergenic | 35.0% |
| ! | TTTTCAACTCAAACTCAAGG+TGG | + | chr3_1:6135483-6135502 | Msa0346180:intron | 35.0% |
| ATGTATAAGAGGTGGCAATA+AGG | - | chr3_1:6135759-6135778 | None:intergenic | 35.0% | |
| GTATCTCGTTCATGTATAAG+AGG | - | chr3_1:6135770-6135789 | None:intergenic | 35.0% | |
| AGGCTGTGAATAACTGTAAA+AGG | + | chr3_1:6135924-6135943 | Msa0346180:CDS | 35.0% | |
| GGCTGTGAATAACTGTAAAA+GGG | + | chr3_1:6135925-6135944 | Msa0346180:CDS | 35.0% | |
| TGTGAATAACTGTAAAAGGG+TGG | + | chr3_1:6135928-6135947 | Msa0346180:CDS | 35.0% | |
| AATAACTGTAAAAGGGTGGT+AGG | + | chr3_1:6135932-6135951 | Msa0346180:CDS | 35.0% | |
| CAGCTAACAGTGTATATATG+TGG | - | chr3_1:6135973-6135992 | None:intergenic | 35.0% | |
| ! | CATTTGAATTTTTCCCAGCA+AGG | - | chr3_1:6136021-6136040 | None:intergenic | 35.0% |
| GCTGGGAAAAATTCAAATGA+TGG | + | chr3_1:6136022-6136041 | Msa0346180:CDS | 35.0% | |
| GGGAAAAATTCAAATGATGG+GGG | + | chr3_1:6136025-6136044 | Msa0346180:CDS | 35.0% | |
| ATACCACTAATTGGCAAAAC+AGG | + | chr3_1:6136125-6136144 | Msa0346180:CDS | 35.0% | |
| ! | ATACCTGTTTTGCCAATTAG+TGG | - | chr3_1:6136131-6136150 | None:intergenic | 35.0% |
| TTCTGGCAGTGAAAGAAAAT+GGG | + | chr3_1:6136297-6136316 | Msa0346180:CDS | 35.0% | |
| !! | TTCAGTGGATTTTTCACCCA+AGG | - | chr3_1:6133133-6133152 | None:intergenic | 40.0% |
| AATCCACTGAAAATGGAGGT+TGG | + | chr3_1:6133142-6133161 | Msa0346180:CDS | 40.0% | |
| ATCCACTGAAAATGGAGGTT+GGG | + | chr3_1:6133143-6133162 | Msa0346180:CDS | 40.0% | |
| !!! | AGCATTTTGTGTTAGCTCTG+AGG | + | chr3_1:6133179-6133198 | Msa0346180:CDS | 40.0% |
| !!! | GCATTTTGTGTTAGCTCTGA+GGG | + | chr3_1:6133180-6133199 | Msa0346180:CDS | 40.0% |
| !! | TTAGCTCTGAGGGTATTTGA+AGG | + | chr3_1:6133190-6133209 | Msa0346180:intron | 40.0% |
| ! | TTTATAGGTGAAGAGTGTGC+TGG | + | chr3_1:6133279-6133298 | Msa0346180:intron | 40.0% |
| CTGAAAGACATGAACCACTA+AGG | + | chr3_1:6133447-6133466 | Msa0346180:intron | 40.0% | |
| TTGATCATACTCAAGGCCAA+GGG | + | chr3_1:6133510-6133529 | Msa0346180:CDS | 40.0% | |
| GACAGAGAAACAACAAGAAC+AGG | + | chr3_1:6133635-6133654 | Msa0346180:intron | 40.0% | |
| !! | TTAGGAGCATATCGGCTTAT+AGG | + | chr3_1:6134652-6134671 | Msa0346180:CDS | 40.0% |
| TAACCAAGGTGAGAGAATTC+AGG | - | chr3_1:6134723-6134742 | None:intergenic | 40.0% | |
| TGAATTCTCTCACCTTGGTT+AGG | + | chr3_1:6134722-6134741 | Msa0346180:intron | 40.0% | |
| GAATTCTCTCACCTTGGTTA+GGG | + | chr3_1:6134723-6134742 | Msa0346180:intron | 40.0% | |
| ! | ACCTATTGGTTGCAAGTTCA+AGG | - | chr3_1:6134770-6134789 | None:intergenic | 40.0% |
| !! | CACCATGATGCTCTAGAAAT+AGG | - | chr3_1:6134982-6135001 | None:intergenic | 40.0% |
| ! | ACTGGTGTTTCCCTTTTCTT+AGG | + | chr3_1:6135201-6135220 | Msa0346180:intron | 40.0% |
| TCATGGCATTCCTCTATCTT+TGG | - | chr3_1:6135233-6135252 | None:intergenic | 40.0% | |
| AAGATAGAGGAATGCCATGA+TGG | + | chr3_1:6135233-6135252 | Msa0346180:intron | 40.0% | |
| AGATAGAGGAATGCCATGAT+GGG | + | chr3_1:6135234-6135253 | Msa0346180:intron | 40.0% | |
| GAACTCTTCATTCCTGCTAT+CGG | - | chr3_1:6135281-6135300 | None:intergenic | 40.0% | |
| ATGAAGCGGTTCAGATTGAA+AGG | - | chr3_1:6135313-6135332 | None:intergenic | 40.0% | |
| GAAAAACTGAGCTGCTCATA+AGG | - | chr3_1:6135728-6135747 | None:intergenic | 40.0% | |
| ATAAGAGGTGGCAATAAGGA+TGG | - | chr3_1:6135755-6135774 | None:intergenic | 40.0% | |
| TCTCGTTCATGTATAAGAGG+TGG | - | chr3_1:6135767-6135786 | None:intergenic | 40.0% | |
| !!! | CGATGCAATTTTTGAGTGAG+AGG | - | chr3_1:6135807-6135826 | None:intergenic | 40.0% |
| TAGGACTTGTCACATGCAAA+AGG | - | chr3_1:6135836-6135855 | None:intergenic | 40.0% | |
| ! | ATCTTGCATGGTCTTTGAAG+CGG | + | chr3_1:6135897-6135916 | Msa0346180:CDS | 40.0% |
| TATACACTGTTAGCTGATGC+AGG | + | chr3_1:6135977-6135996 | Msa0346180:CDS | 40.0% | |
| ATACACTGTTAGCTGATGCA+GGG | + | chr3_1:6135978-6135997 | Msa0346180:CDS | 40.0% | |
| ! | TCAAATGATGGGGGTTCTAA+TGG | + | chr3_1:6136034-6136053 | Msa0346180:CDS | 40.0% |
| GTATCAGAACTCTTGCTTCA+AGG | + | chr3_1:6136147-6136166 | Msa0346180:CDS | 40.0% | |
| TTTCTTTCACTGCCAGAAGT+TGG | - | chr3_1:6136295-6136314 | None:intergenic | 40.0% | |
| CTTCTGGCAGTGAAAGAAAA+TGG | + | chr3_1:6136296-6136315 | Msa0346180:CDS | 40.0% | |
| ! | TTCCCAACCTCCATTTTCAG+TGG | - | chr3_1:6133148-6133167 | None:intergenic | 45.0% |
| CCTCATTGTCATCCTCACAA+GGG | - | chr3_1:6133306-6133325 | None:intergenic | 45.0% | |
| CCTTGTGAGGATGACAATGA+GGG | + | chr3_1:6133304-6133323 | Msa0346180:CDS | 45.0% | |
| TACTGACAGTGAGGTAAGTG+AGG | + | chr3_1:6133378-6133397 | Msa0346180:intron | 45.0% | |
| GTTGATCATACTCAAGGCCA+AGG | + | chr3_1:6133509-6133528 | Msa0346180:CDS | 45.0% | |
| TGATCATACTCAAGGCCAAG+GGG | + | chr3_1:6133511-6133530 | Msa0346180:CDS | 45.0% | |
| TGTTGCACCCATAGGTGATT+AGG | + | chr3_1:6133544-6133563 | Msa0346180:intron | 45.0% | |
| ! | TTGCGATTTTGCACACACAG+AGG | - | chr3_1:6134063-6134082 | None:intergenic | 45.0% |
| AAAGAGGTCTAGAAGAGGCA+AGG | + | chr3_1:6134377-6134396 | Msa0346180:intron | 45.0% | |
| AAGAGGTCTAGAAGAGGCAA+GGG | + | chr3_1:6134378-6134397 | Msa0346180:intron | 45.0% | |
| AATTCAGGCAGACCAGAACA+CGG | - | chr3_1:6134708-6134727 | None:intergenic | 45.0% | |
| GCCTTGAACTTGCAACCAAT+AGG | + | chr3_1:6134766-6134785 | Msa0346180:intron | 45.0% | |
| GGGAAACACCAGTGTTAAAG+AGG | - | chr3_1:6135194-6135213 | None:intergenic | 45.0% | |
| !! | AAACCTTTAGAGCCGATAGC+AGG | + | chr3_1:6135266-6135285 | Msa0346180:intron | 45.0% |
| !! | ATTCCTGCTATCGGCTCTAA+AGG | - | chr3_1:6135272-6135291 | None:intergenic | 45.0% |
| GCGGTTCAGATTGAAAGGTA+GGG | - | chr3_1:6135308-6135327 | None:intergenic | 45.0% | |
| AGCGGTTCAGATTGAAAGGT+AGG | - | chr3_1:6135309-6135328 | None:intergenic | 45.0% | |
| ! | GGCTACATGACTTGCACTTA+GGG | + | chr3_1:6135353-6135372 | Msa0346180:intron | 45.0% |
| GAAGGGATGATCATTGCTCT+TGG | + | chr3_1:6135428-6135447 | Msa0346180:intron | 45.0% | |
| CTGTTCTGCAGTATCTTGCA+TGG | + | chr3_1:6135885-6135904 | Msa0346180:intron | 45.0% | |
| !! | ATGGTCTTTGAAGCGGAGAA+AGG | + | chr3_1:6135904-6135923 | Msa0346180:CDS | 45.0% |
| AAAAGGGTGGTAGGTGTGAT+TGG | + | chr3_1:6135941-6135960 | Msa0346180:CDS | 45.0% | |
| GTGGTAGGTGTGATTGGAAA+AGG | + | chr3_1:6135947-6135966 | Msa0346180:CDS | 45.0% | |
| TTGAGATTTCGAGACCTTGC+TGG | + | chr3_1:6136004-6136023 | Msa0346180:CDS | 45.0% | |
| TGAGATTTCGAGACCTTGCT+GGG | + | chr3_1:6136005-6136024 | Msa0346180:CDS | 45.0% | |
| CCACTCTCAACATGATACAG+TGG | - | chr3_1:6136266-6136285 | None:intergenic | 45.0% | |
| CCACTGTATCATGTTGAGAG+TGG | + | chr3_1:6136263-6136282 | Msa0346180:CDS | 45.0% | |
| CCCTTGTGAGGATGACAATG+AGG | + | chr3_1:6133303-6133322 | Msa0346180:CDS | 50.0% | |
| CCCTCATTGTCATCCTCACA+AGG | - | chr3_1:6133307-6133326 | None:intergenic | 50.0% | |
| TAGTGACGGCGATTCTCGAA+AGG | + | chr3_1:6134524-6134543 | Msa0346180:CDS | 50.0% | |
| TCCCAGTCAGGTGAAGATAG+CGG | + | chr3_1:6134624-6134643 | Msa0346180:CDS | 50.0% | |
| !! | GTGAAGATAGCGGCGGTTTT+AGG | + | chr3_1:6134634-6134653 | Msa0346180:CDS | 50.0% |
| !!! | CGGCGGTTTTAGGAGCATAT+CGG | + | chr3_1:6134644-6134663 | Msa0346180:CDS | 50.0% |
| CTGCCTGAATTCTCTCACCT+TGG | + | chr3_1:6134717-6134736 | Msa0346180:CDS | 50.0% | |
| TAAACCAGTGGCCCTAACCA+AGG | - | chr3_1:6134737-6134756 | None:intergenic | 50.0% | |
| !! | AGGGCCACTGGTTTACGTTA+AGG | + | chr3_1:6134742-6134761 | Msa0346180:intron | 50.0% |
| !! | GGGCCACTGGTTTACGTTAA+GGG | + | chr3_1:6134743-6134762 | Msa0346180:intron | 50.0% |
| !! | GGCCACTGGTTTACGTTAAG+GGG | + | chr3_1:6134744-6134763 | Msa0346180:intron | 50.0% |
| GGAGTTTCTTAACGGCCACA+AGG | - | chr3_1:6134863-6134882 | None:intergenic | 50.0% | |
| ! | GGGCTACATGACTTGCACTT+AGG | + | chr3_1:6135352-6135371 | Msa0346180:intron | 50.0% |
| ! | ATGATGGGGGTTCTAATGGC+TGG | + | chr3_1:6136038-6136057 | Msa0346180:CDS | 50.0% |
| GAGTGGAGTAGACCAACTTC+TGG | + | chr3_1:6136280-6136299 | Msa0346180:CDS | 50.0% | |
| ATGGGCCTCCTTTCTTCAGG+GGG | + | chr3_1:6133082-6133101 | Msa0346180:CDS | 55.0% | |
| TGTAGCCCCCTGAAGAAAGG+AGG | - | chr3_1:6133090-6133109 | None:intergenic | 55.0% | |
| CACTGTAGCCCCCTGAAGAA+AGG | - | chr3_1:6133093-6133112 | None:intergenic | 55.0% | |
| AGGTCTAGAAGAGGCAAGGG+TGG | + | chr3_1:6134381-6134400 | Msa0346180:CDS | 55.0% | |
| AAGGGTGGCATGCTTCCTCT+TGG | + | chr3_1:6134396-6134415 | Msa0346180:CDS | 55.0% | |
| GATCTGAATGGCTCCCAGTC+AGG | + | chr3_1:6134612-6134631 | Msa0346180:CDS | 55.0% | |
| GCCGCTATCTTCACCTGACT+GGG | - | chr3_1:6134628-6134647 | None:intergenic | 55.0% | |
| ! | CAGTCAGGTGAAGATAGCGG+CGG | + | chr3_1:6134627-6134646 | Msa0346180:CDS | 55.0% |
| ! | CACGGTGATGACGCGGATAT+AGG | - | chr3_1:6134690-6134709 | None:intergenic | 55.0% |
| ! | ACCAGAACACGGTGATGACG+CGG | - | chr3_1:6134697-6134716 | None:intergenic | 55.0% |
| GGCCCCTTAACGTAAACCAG+TGG | - | chr3_1:6134749-6134768 | None:intergenic | 55.0% | |
| GAGTGTGCTGGACCCTTGTG+AGG | + | chr3_1:6133291-6133310 | Msa0346180:CDS | 60.0% | |
| CGCCGCTATCTTCACCTGAC+TGG | - | chr3_1:6134629-6134648 | None:intergenic | 60.0% | |
| TCCGCGTCATCACCGTGTTC+TGG | + | chr3_1:6134693-6134712 | Msa0346180:CDS | 60.0% | |
| CTCACCTTGGTTAGGGCCAC+TGG | + | chr3_1:6134730-6134749 | Msa0346180:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 6133082 | 6136328 | 6133082 | ID=Msa0346180;Name=Msa0346180 |
| chr3_1 | mRNA | 6133082 | 6136328 | 6133082 | ID=Msa0346180-mRNA-1;Parent=Msa0346180;Name=Msa0346180-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.5|0.33|1|1|1|9|0|395 |
| chr3_1 | exon | 6133082 | 6133201 | 6133082 | ID=Msa0346180-mRNA-1:exon:1768;Parent=Msa0346180-mRNA-1 |
| chr3_1 | exon | 6133286 | 6133390 | 6133286 | ID=Msa0346180-mRNA-1:exon:1769;Parent=Msa0346180-mRNA-1 |
| chr3_1 | exon | 6133509 | 6133557 | 6133509 | ID=Msa0346180-mRNA-1:exon:1770;Parent=Msa0346180-mRNA-1 |
| chr3_1 | exon | 6133640 | 6133681 | 6133640 | ID=Msa0346180-mRNA-1:exon:1771;Parent=Msa0346180-mRNA-1 |
| chr3_1 | exon | 6134220 | 6134302 | 6134220 | ID=Msa0346180-mRNA-1:exon:1772;Parent=Msa0346180-mRNA-1 |
| chr3_1 | exon | 6134381 | 6134738 | 6134381 | ID=Msa0346180-mRNA-1:exon:1773;Parent=Msa0346180-mRNA-1 |
| chr3_1 | exon | 6135699 | 6135790 | 6135699 | ID=Msa0346180-mRNA-1:exon:1774;Parent=Msa0346180-mRNA-1 |
| chr3_1 | exon | 6135896 | 6136168 | 6135896 | ID=Msa0346180-mRNA-1:exon:1775;Parent=Msa0346180-mRNA-1 |
| chr3_1 | exon | 6136263 | 6136328 | 6136263 | ID=Msa0346180-mRNA-1:exon:1776;Parent=Msa0346180-mRNA-1 |
| chr3_1 | CDS | 6133082 | 6133201 | 6133082 | ID=Msa0346180-mRNA-1:cds;Parent=Msa0346180-mRNA-1 |
| chr3_1 | CDS | 6133286 | 6133390 | 6133286 | ID=Msa0346180-mRNA-1:cds;Parent=Msa0346180-mRNA-1 |
| chr3_1 | CDS | 6133509 | 6133557 | 6133509 | ID=Msa0346180-mRNA-1:cds;Parent=Msa0346180-mRNA-1 |
| chr3_1 | CDS | 6133640 | 6133681 | 6133640 | ID=Msa0346180-mRNA-1:cds;Parent=Msa0346180-mRNA-1 |
| chr3_1 | CDS | 6134220 | 6134302 | 6134220 | ID=Msa0346180-mRNA-1:cds;Parent=Msa0346180-mRNA-1 |
| chr3_1 | CDS | 6134381 | 6134738 | 6134381 | ID=Msa0346180-mRNA-1:cds;Parent=Msa0346180-mRNA-1 |
| chr3_1 | CDS | 6135699 | 6135790 | 6135699 | ID=Msa0346180-mRNA-1:cds;Parent=Msa0346180-mRNA-1 |
| chr3_1 | CDS | 6135896 | 6136168 | 6135896 | ID=Msa0346180-mRNA-1:cds;Parent=Msa0346180-mRNA-1 |
| chr3_1 | CDS | 6136263 | 6136328 | 6136263 | ID=Msa0346180-mRNA-1:cds;Parent=Msa0346180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
