Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1061560 | XP_013448969.1 | 86.170 | 282 | 9 | 3 | 1 | 280 | 1 | 254 | 6.16e-161 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1061560 | sp|Q8W487|YB95_ARATH | 38.710 | 279 | 136 | 6 | 4 | 280 | 5 | 250 | 8.79e-55 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1061560 | I3SR78 | 86.170 | 282 | 9 | 3 | 1 | 280 | 1 | 254 | 2.94e-161 | 457 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1031740 | Msa1061560 | 0.803379 | 3.586154e-49 | -8.615850e-47 |
| Msa1061560 | Msa1118790 | 0.811933 | 5.464116e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1061560 | MtrunA17_Chr7g0239661 | 86.170 | 282 | 9 | 3 | 1 | 280 | 1 | 254 | 5.67e-165 | 457 |
| Msa1061560 | MtrunA17_Chr5g0435861 | 42.806 | 278 | 110 | 5 | 20 | 279 | 8 | 254 | 2.07e-65 | 205 |
| Msa1061560 | MtrunA17_Chr4g0001071 | 37.736 | 159 | 91 | 3 | 125 | 280 | 83 | 236 | 3.35e-28 | 108 |
| Msa1061560 | MtrunA17_Chr1g0149801 | 32.298 | 161 | 98 | 4 | 125 | 280 | 79 | 233 | 2.04e-17 | 79.3 |
| Msa1061560 | MtrunA17_Chr7g0257161 | 46.667 | 60 | 32 | 0 | 221 | 280 | 141 | 200 | 2.39e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1061560 | AT5G02050.1 | 44.108 | 297 | 119 | 7 | 1 | 280 | 1 | 267 | 1.71e-65 | 206 |
| Msa1061560 | AT3G55605.1 | 41.096 | 292 | 126 | 10 | 1 | 280 | 1 | 258 | 1.06e-57 | 186 |
| Msa1061560 | AT2G39795.1 | 38.710 | 279 | 136 | 6 | 4 | 280 | 5 | 250 | 8.93e-56 | 180 |
| Msa1061560 | AT5G05990.1 | 44.000 | 175 | 85 | 2 | 118 | 279 | 84 | 258 | 9.33e-44 | 150 |
| Msa1061560 | AT2G39790.1 | 30.714 | 280 | 152 | 9 | 1 | 279 | 1 | 239 | 4.92e-30 | 113 |
| Msa1061560 | AT1G15870.1 | 32.704 | 159 | 100 | 4 | 124 | 280 | 88 | 241 | 2.05e-25 | 101 |
| Msa1061560 | AT1G80720.2 | 33.133 | 166 | 105 | 4 | 117 | 280 | 80 | 241 | 7.64e-21 | 89.4 |
| Msa1061560 | AT1G80720.1 | 33.333 | 168 | 102 | 6 | 117 | 280 | 28 | 189 | 1.66e-20 | 87.0 |
| Msa1061560 | AT4G31930.1 | 34.568 | 162 | 93 | 6 | 125 | 280 | 80 | 234 | 5.35e-17 | 78.6 |
Find 93 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCATCCGGATTCTTTA+TGG | 0.182617 | 7_2:-51340690 | None:intergenic |
| AGGGTTTAGTGTTAGGGTTT+TGG | 0.197741 | 7_2:-51338089 | None:intergenic |
| AGCGGTGTACATAGACATTT+TGG | 0.270785 | 7_2:-51338135 | None:intergenic |
| GGGTTTGAGGGTTTAGTGTT+AGG | 0.271227 | 7_2:-51338096 | None:intergenic |
| ATGGAGTGTGTATGGAGTTT+GGG | 0.281286 | 7_2:+51340627 | Msa1061560:CDS |
| TTGAGATGTTATCTATAGTT+TGG | 0.302035 | 7_2:+51341238 | Msa1061560:three_prime_UTR |
| CTCTGTTGAGGTGCCACGTT+AGG | 0.340860 | 7_2:-51340524 | None:intergenic |
| AATGGAGTGTGTATGGAGTT+TGG | 0.345306 | 7_2:+51340626 | Msa1061560:CDS |
| GAGAGGGAGTGCGGCGGCGG+TGG | 0.353608 | 7_2:-51338168 | None:intergenic |
| CTATCATTCTCATTCTTCTC+GGG | 0.360091 | 7_2:-51340563 | None:intergenic |
| GAGTGGAGAAAGGGGTTTGA+GGG | 0.367632 | 7_2:-51338108 | None:intergenic |
| CAAAGACAACAAGGAATACT+TGG | 0.378496 | 7_2:+51340932 | Msa1061560:CDS |
| GCTATCATTCTCATTCTTCT+CGG | 0.381925 | 7_2:-51340564 | None:intergenic |
| CTATCAATCACAACTTCATC+AGG | 0.386386 | 7_2:-51340662 | None:intergenic |
| GATTGCGCTGTGGAAGGTTC+TGG | 0.386945 | 7_2:-51338219 | None:intergenic |
| CAAAGGAAATGGAGTGTGTA+TGG | 0.388939 | 7_2:+51340619 | Msa1061560:CDS |
| GAGGAGAGGGAGTGCGGCGG+CGG | 0.393871 | 7_2:-51338171 | None:intergenic |
| AGTTGAATAGTTCTTTCTCC+AGG | 0.396432 | 7_2:-51340455 | None:intergenic |
| GGTTTGAGGGTTTAGTGTTA+GGG | 0.399619 | 7_2:-51338095 | None:intergenic |
| AAACAAATGAGACCTATCTA+TGG | 0.406555 | 7_2:-51341198 | None:intergenic |
| TAACCATCAGATCATATTAC+AGG | 0.408949 | 7_2:-51341085 | None:intergenic |
| GGACTCTTGTATTTGATTGA+AGG | 0.418794 | 7_2:-51341177 | None:intergenic |
| TGAAGACCAGCTGGTATATG+AGG | 0.426221 | 7_2:+51340712 | Msa1061560:CDS |
| ATGCATTTAAACTAAAATCA+AGG | 0.442879 | 7_2:-51341055 | None:intergenic |
| TTTGGAGGTGAGTGGAGAAA+GGG | 0.449614 | 7_2:-51338117 | None:intergenic |
| GACTCTTGTATTTGATTGAA+GGG | 0.453370 | 7_2:-51341176 | None:intergenic |
| TTGTAGATCTGTCCCACAAT+CGG | 0.480025 | 7_2:+51340272 | Msa1061560:CDS |
| TGAGTGGAGAAAGGGGTTTG+AGG | 0.480286 | 7_2:-51338109 | None:intergenic |
| GTGCGGCGGCGGTGGCGCGA+CGG | 0.481559 | 7_2:-51338160 | None:intergenic |
| TTGAAAACAGTCACAACTAA+AGG | 0.487624 | 7_2:-51340599 | None:intergenic |
| AGCTGGTCTTCAGATTCATC+CGG | 0.494031 | 7_2:-51340701 | None:intergenic |
| TTTGAGATCGAGGACAACCC+TGG | 0.494413 | 7_2:+51340437 | Msa1061560:CDS |
| ACTTGAGAAAAGCCTTCTGC+AGG | 0.495315 | 7_2:-51340848 | None:intergenic |
| TAGCTTGTCCATAAAGAATC+CGG | 0.497260 | 7_2:+51340682 | Msa1061560:CDS |
| GGCGGTGGCGCGACGGAGAG+CGG | 0.500941 | 7_2:-51338153 | None:intergenic |
| TGGAGGAAGTTGCCGCTGCA+CGG | 0.501833 | 7_2:-51338199 | None:intergenic |
| TTGCCGCTGCACGGCGAGAG+AGG | 0.509670 | 7_2:-51338190 | None:intergenic |
| GGGTTGTCCTCGATCTCAAA+AGG | 0.511746 | 7_2:-51340434 | None:intergenic |
| CGAAGGAGAGTATCATCAGC+GGG | 0.511851 | 7_2:-51338323 | None:intergenic |
| TCTGTTGAGGTGCCACGTTA+GGG | 0.512444 | 7_2:-51340523 | None:intergenic |
| GTTGAATAGTTCTTTCTCCA+GGG | 0.519495 | 7_2:-51340454 | None:intergenic |
| AAATACAAGAGTCCATAGAT+AGG | 0.526268 | 7_2:+51341186 | Msa1061560:three_prime_UTR |
| AGAGAGGAGAGGGAGTGCGG+CGG | 0.530798 | 7_2:-51338174 | None:intergenic |
| GAGTGGTTTCATTGTGGCGA+AGG | 0.535144 | 7_2:-51338253 | None:intergenic |
| TGAAATCAACTGTGCTCTTG+AGG | 0.536484 | 7_2:+51338358 | Msa1061560:CDS |
| ACCTCAACAGAGTGAGGATG+AGG | 0.540010 | 7_2:+51340535 | Msa1061560:CDS |
| CTGCACGGCGAGAGAGGAGA+GGG | 0.542154 | 7_2:-51338184 | None:intergenic |
| ATTGTGGCGAAGGAGGTTAA+CGG | 0.544318 | 7_2:-51338243 | None:intergenic |
| CACAGTTGATTTCACTGTCA+AGG | 0.547033 | 7_2:-51338349 | None:intergenic |
| CCCTCTCGTAGCTTCGCTTA+CGG | 0.550555 | 7_2:+51338284 | Msa1061560:CDS |
| TTGGAGGTGAGTGGAGAAAG+GGG | 0.554857 | 7_2:-51338116 | None:intergenic |
| GCTCTTGAGGATAATAATGA+AGG | 0.555442 | 7_2:+51338371 | Msa1061560:CDS |
| TTGTGTTGGGTGTTATCCCT+CGG | 0.555715 | 7_2:-51340881 | None:intergenic |
| GCCTCATCCTCACTCTGTTG+AGG | 0.559817 | 7_2:-51340536 | None:intergenic |
| TGCATTTAAACTAAAATCAA+GGG | 0.563695 | 7_2:-51341054 | None:intergenic |
| AAAGACAACAAGGAATACTT+GGG | 0.563940 | 7_2:+51340933 | Msa1061560:CDS |
| TGGTTTCATTGTGGCGAAGG+AGG | 0.565255 | 7_2:-51338250 | None:intergenic |
| AACGGCGATTGCGCTGTGGA+AGG | 0.565623 | 7_2:-51338225 | None:intergenic |
| GATCTCAAAAGGAAAATCAC+CGG | 0.567645 | 7_2:-51340423 | None:intergenic |
| GGATGAATCTGAAGACCAGC+TGG | 0.570489 | 7_2:+51340703 | Msa1061560:CDS |
| CAGGTCCCTCATATACCAGC+TGG | 0.571273 | 7_2:-51340718 | None:intergenic |
| GCGAGAGAGGAGAGGGAGTG+CGG | 0.575299 | 7_2:-51338177 | None:intergenic |
| TATCATTCTCATTCTTCTCG+GGG | 0.576332 | 7_2:-51340562 | None:intergenic |
| CTCAAGTATCTCGAGATCCG+AGG | 0.584465 | 7_2:+51340864 | Msa1061560:CDS |
| CAAAATGAGTGGTTTCATTG+TGG | 0.586542 | 7_2:-51338259 | None:intergenic |
| TTTGGATGAAAACCTGCAGA+AGG | 0.596555 | 7_2:+51340836 | Msa1061560:CDS |
| TCAAGTATCTCGAGATCCGA+GGG | 0.601222 | 7_2:+51340865 | Msa1061560:CDS |
| CTAAATGCTTACGTGAACTC+AGG | 0.611960 | 7_2:-51340737 | None:intergenic |
| TCTCCTCTCTCGCCGTGCAG+CGG | 0.617355 | 7_2:+51338187 | Msa1061560:CDS |
| ATCTCAAAAGGAAAATCACC+GGG | 0.618030 | 7_2:-51340422 | None:intergenic |
| TGGAGTGTGTATGGAGTTTG+GGG | 0.622811 | 7_2:+51340628 | Msa1061560:CDS |
| TGCGCTGTGGAAGGTTCTGG+AGG | 0.628252 | 7_2:-51338216 | None:intergenic |
| GAAGACCAGCTGGTATATGA+GGG | 0.628639 | 7_2:+51340713 | Msa1061560:CDS |
| GCTGCACGGCGAGAGAGGAG+AGG | 0.631466 | 7_2:-51338185 | None:intergenic |
| TGTCCTGTAATATGATCTGA+TGG | 0.633731 | 7_2:+51341082 | Msa1061560:three_prime_UTR |
| TCGAAGGAGAGTATCATCAG+CGG | 0.634573 | 7_2:-51338324 | None:intergenic |
| TCTATAGTTTGGCTAGACGA+AGG | 0.636043 | 7_2:+51341249 | Msa1061560:three_prime_UTR |
| GATTGTGGGACAGATCTACA+AGG | 0.638666 | 7_2:-51340270 | None:intergenic |
| CGTGGCACCTCAACAGAGTG+AGG | 0.643427 | 7_2:+51340529 | Msa1061560:CDS |
| TATCAATCACAACTTCATCA+GGG | 0.644367 | 7_2:-51340661 | None:intergenic |
| CATGTTCAACAAAGACAACA+AGG | 0.647062 | 7_2:+51340923 | Msa1061560:CDS |
| TTTCACTGTCAAGGACTCGA+AGG | 0.655034 | 7_2:-51338340 | None:intergenic |
| ACAACAAGGAATACTTGGGG+TGG | 0.664017 | 7_2:+51340937 | Msa1061560:CDS |
| GGTTAACGGCGATTGCGCTG+TGG | 0.671069 | 7_2:-51338229 | None:intergenic |
| ACGAGAGGGTACAAAATGAG+TGG | 0.672739 | 7_2:-51338270 | None:intergenic |
| AAGGAGAGTATCATCAGCGG+GGG | 0.679029 | 7_2:-51338321 | None:intergenic |
| TATGATCTGATGGTTACTTG+AGG | 0.683829 | 7_2:+51341092 | Msa1061560:three_prime_UTR |
| GCCGTAAGCGAAGCTACGAG+AGG | 0.685303 | 7_2:-51338285 | None:intergenic |
| TCAAGTTGACATCCCTAACG+TGG | 0.692064 | 7_2:+51340511 | Msa1061560:CDS |
| CCGTAAGCGAAGCTACGAGA+GGG | 0.698699 | 7_2:-51338284 | None:intergenic |
| GAAGGAGAGTATCATCAGCG+GGG | 0.713416 | 7_2:-51338322 | None:intergenic |
| ATTGTGGGACAGATCTACAA+GGG | 0.724176 | 7_2:-51340269 | None:intergenic |
| AAGACAACAAGGAATACTTG+GGG | 0.756411 | 7_2:+51340934 | Msa1061560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAACTTAAAAACAAA+GGG | - | chr7_2:51338426-51338445 | None:intergenic | 10.0% |
| !! | AAAAAAAAACTTAAAAACAA+AGG | - | chr7_2:51338427-51338446 | None:intergenic | 10.0% |
| !!! | TTTCAATTTTTTTTTTTTGT+TGG | + | chr7_2:51338518-51338537 | Msa1061560:intron | 10.0% |
| !!! | TTCAATTTTTTTTTTTTGTT+GGG | + | chr7_2:51338519-51338538 | Msa1061560:intron | 10.0% |
| !!! | AAAAAATTACGTTTGTTAAA+AGG | - | chr7_2:51338397-51338416 | None:intergenic | 15.0% |
| !! | AAGATGTAAAAATTCTATAA+TGG | + | chr7_2:51338710-51338729 | Msa1061560:intron | 15.0% |
| !! | AAAAACAAAACTTCACAAAA+GGG | - | chr7_2:51338594-51338613 | None:intergenic | 20.0% |
| !! | TAAAAACAAAACTTCACAAA+AGG | - | chr7_2:51338595-51338614 | None:intergenic | 20.0% |
| !!! | TGAAGTTTTGTTTTTATTAG+TGG | + | chr7_2:51338599-51338618 | Msa1061560:intron | 20.0% |
| !!! | TAGAATTTTTACATCTTACA+AGG | - | chr7_2:51338707-51338726 | None:intergenic | 20.0% |
| !!! | TTTAGTTGATGTAAATAAAG+TGG | + | chr7_2:51339316-51339335 | Msa1061560:intron | 20.0% |
| !! | AAATATAAACAAAAATGGAG+TGG | - | chr7_2:51339609-51339628 | None:intergenic | 20.0% |
| !! | GAGTGAAATATAAACAAAAA+TGG | - | chr7_2:51339614-51339633 | None:intergenic | 20.0% |
| !! | AAATAGGTCATTTAAACATA+CGG | - | chr7_2:51339636-51339655 | None:intergenic | 20.0% |
| !! | TAAATCCAGACTTAAAAAAT+AGG | - | chr7_2:51339652-51339671 | None:intergenic | 20.0% |
| !!! | ATTTACATATAATGGGTAAA+AGG | - | chr7_2:51339788-51339807 | None:intergenic | 20.0% |
| !! | ATGAGCAATTTACATATAAT+GGG | - | chr7_2:51339795-51339814 | None:intergenic | 20.0% |
| !! | AATGAGCAATTTACATATAA+TGG | - | chr7_2:51339796-51339815 | None:intergenic | 20.0% |
| !! | TGCATTTAAACTAAAATCAA+GGG | - | chr7_2:51341057-51341076 | None:intergenic | 20.0% |
| !! | ATGCATTTAAACTAAAATCA+AGG | - | chr7_2:51341058-51341077 | None:intergenic | 20.0% |
| !!! | GCTAATAATTTTTGAAAACT+TGG | + | chr7_2:51341117-51341136 | Msa1061560:three_prime_UTR | 20.0% |
| ! | AAAACAAAACTTCACAAAAG+GGG | - | chr7_2:51338593-51338612 | None:intergenic | 25.0% |
| ! | TGGATCTTAATAGAATGATA+AGG | + | chr7_2:51338619-51338638 | Msa1061560:intron | 25.0% |
| ! | GGATCTTAATAGAATGATAA+GGG | + | chr7_2:51338620-51338639 | Msa1061560:intron | 25.0% |
| !! | AGAATGATAAGGGTTTTTAT+AGG | + | chr7_2:51338630-51338649 | Msa1061560:intron | 25.0% |
| !! | GAATGATAAGGGTTTTTATA+GGG | + | chr7_2:51338631-51338650 | Msa1061560:intron | 25.0% |
| !! | TTTTACATCTTACAAGGAAA+TGG | - | chr7_2:51338701-51338720 | None:intergenic | 25.0% |
| !! | CATGTTCTGAACATTATTAT+TGG | + | chr7_2:51338862-51338881 | Msa1061560:intron | 25.0% |
| !! | TCATTTTCTCGAAATATTAC+TGG | + | chr7_2:51338937-51338956 | Msa1061560:intron | 25.0% |
| ! | TTCCACTGAAAAAATGATAT+TGG | + | chr7_2:51339254-51339273 | Msa1061560:intron | 25.0% |
| !!! | ATCCAATATCATTTTTTCAG+TGG | - | chr7_2:51339259-51339278 | None:intergenic | 25.0% |
| ! | TTGATGTAAATAAAGTGGAA+TGG | + | chr7_2:51339321-51339340 | Msa1061560:intron | 25.0% |
| !! | AGTGTCAATAATATTTCTAC+CGG | + | chr7_2:51339490-51339509 | Msa1061560:intron | 25.0% |
| !! | TTAAGTTCTTGATCTTTTAG+TGG | + | chr7_2:51339570-51339589 | Msa1061560:intron | 25.0% |
| !!! | AATGACCTATTTTTTAAGTC+TGG | + | chr7_2:51339644-51339663 | Msa1061560:intron | 25.0% |
| !!! | TTTTTCAATTATTTGCGTGT+AGG | + | chr7_2:51339702-51339721 | Msa1061560:intron | 25.0% |
| !! | AATCAAGTTATAGCATGTTT+TGG | - | chr7_2:51339754-51339773 | None:intergenic | 25.0% |
| ! | AAAACATGCTATAACTTGAT+TGG | + | chr7_2:51339753-51339772 | Msa1061560:intron | 25.0% |
| ! | TCAAATATTGTTTATTGCTC+TGG | + | chr7_2:51339815-51339834 | Msa1061560:intron | 25.0% |
| ! | AAGAGATATTCAAATCTACA+AGG | - | chr7_2:51340029-51340048 | None:intergenic | 25.0% |
| ! | CAACTTTCAGACTAAAAAAA+AGG | - | chr7_2:51340063-51340082 | None:intergenic | 25.0% |
| ! | TTGAGATGTTATCTATAGTT+TGG | + | chr7_2:51341238-51341257 | Msa1061560:three_prime_UTR | 25.0% |
| TTACAAGGAAATGGAACAAA+GGG | - | chr7_2:51338692-51338711 | None:intergenic | 30.0% | |
| ! | TGTAGCAGAATTTGAACTTT+TGG | - | chr7_2:51339195-51339214 | None:intergenic | 30.0% |
| ! | AAGATTTGTCTTTTGTAGTC+TGG | + | chr7_2:51339417-51339436 | Msa1061560:intron | 30.0% |
| ! | AGATTTGTCTTTTGTAGTCT+GGG | + | chr7_2:51339418-51339437 | Msa1061560:intron | 30.0% |
| !!! | TGGATTTATTTTTGTCTGTC+TGG | + | chr7_2:51339664-51339683 | Msa1061560:intron | 30.0% |
| !!! | GGATTTATTTTTGTCTGTCT+GGG | + | chr7_2:51339665-51339684 | Msa1061560:intron | 30.0% |
| TTGAAAACAGTCACAACTAA+AGG | - | chr7_2:51340602-51340621 | None:intergenic | 30.0% | |
| ! | TTAGTTGTGACTGTTTTCAA+AGG | + | chr7_2:51340602-51340621 | Msa1061560:CDS | 30.0% |
| TATCAATCACAACTTCATCA+GGG | - | chr7_2:51340664-51340683 | None:intergenic | 30.0% | |
| !! | TGTTCATTTTTACAGCGATT+TGG | + | chr7_2:51340818-51340837 | Msa1061560:intron | 30.0% |
| ! | TGTAAAAAGTTGGTTGTGTT+GGG | - | chr7_2:51340897-51340916 | None:intergenic | 30.0% |
| CATGTATTCCTGTAAAAAGT+TGG | - | chr7_2:51340907-51340926 | None:intergenic | 30.0% | |
| AAAGACAACAAGGAATACTT+GGG | + | chr7_2:51340933-51340952 | Msa1061560:CDS | 30.0% | |
| TAACCATCAGATCATATTAC+AGG | - | chr7_2:51341088-51341107 | None:intergenic | 30.0% | |
| GACTCTTGTATTTGATTGAA+GGG | - | chr7_2:51341179-51341198 | None:intergenic | 30.0% | |
| AAATACAAGAGTCCATAGAT+AGG | + | chr7_2:51341186-51341205 | Msa1061560:three_prime_UTR | 30.0% | |
| AAACAAATGAGACCTATCTA+TGG | - | chr7_2:51341201-51341220 | None:intergenic | 30.0% | |
| CAAAATGAGTGGTTTCATTG+TGG | - | chr7_2:51338262-51338281 | None:intergenic | 35.0% | |
| GCTCTTGAGGATAATAATGA+AGG | + | chr7_2:51338371-51338390 | Msa1061560:CDS | 35.0% | |
| TTATAGGGTTGTTAGTGTTG+TGG | + | chr7_2:51338646-51338665 | Msa1061560:intron | 35.0% | |
| CTTACAAGGAAATGGAACAA+AGG | - | chr7_2:51338693-51338712 | None:intergenic | 35.0% | |
| ! | TAGGATTTGATCTGAAGTGT+GGG | - | chr7_2:51338768-51338787 | None:intergenic | 35.0% |
| ! | TTAGGATTTGATCTGAAGTG+TGG | - | chr7_2:51338769-51338788 | None:intergenic | 35.0% |
| ACACTTCAGATCAAATCCTA+AGG | + | chr7_2:51338768-51338787 | Msa1061560:intron | 35.0% | |
| TCAATGTGTCAGTACTTCAT+AGG | + | chr7_2:51338887-51338906 | Msa1061560:intron | 35.0% | |
| TAGTTTACTCGTGTTGTCAA+TGG | + | chr7_2:51338987-51339006 | Msa1061560:intron | 35.0% | |
| !! | TACAGAGTGTTGTCAAATAG+TGG | - | chr7_2:51339063-51339082 | None:intergenic | 35.0% |
| ACACTGTAGTGTTATATCAC+TGG | + | chr7_2:51339128-51339147 | Msa1061560:intron | 35.0% | |
| ! | AGCAGAATTTGAACTTTTGG+TGG | - | chr7_2:51339192-51339211 | None:intergenic | 35.0% |
| CAAGCAGTGTTGTCAAATAT+CGG | - | chr7_2:51339226-51339245 | None:intergenic | 35.0% | |
| ACTTTGAGCTACATTCAAAG+TGG | - | chr7_2:51339291-51339310 | None:intergenic | 35.0% | |
| TCAATTGTGTTGTGTGTATG+TGG | + | chr7_2:51339353-51339372 | Msa1061560:intron | 35.0% | |
| CAATTGTGTTGTGTGTATGT+GGG | + | chr7_2:51339354-51339373 | Msa1061560:intron | 35.0% | |
| ! | GTCTTCTTTTGCTACTCATT+TGG | + | chr7_2:51339447-51339466 | Msa1061560:intron | 35.0% |
| CATGTGCAAAACTATGATAC+CGG | - | chr7_2:51339512-51339531 | None:intergenic | 35.0% | |
| !!! | TTATAGCATGTTTTGGCAAC+TGG | - | chr7_2:51339747-51339766 | None:intergenic | 35.0% |
| ATTGTTTATTGCTCTGGTTG+AGG | + | chr7_2:51339821-51339840 | Msa1061560:intron | 35.0% | |
| TTGTTTATTGCTCTGGTTGA+GGG | + | chr7_2:51339822-51339841 | Msa1061560:intron | 35.0% | |
| !! | TGGTGTTATGTTTGGTATCA+TGG | + | chr7_2:51339863-51339882 | Msa1061560:intron | 35.0% |
| !! | CAAAGAATCTTTGGAATCAC+TGG | - | chr7_2:51339982-51340001 | None:intergenic | 35.0% |
| GCAGCAAATCAAAGAATCTT+TGG | - | chr7_2:51339991-51340010 | None:intergenic | 35.0% | |
| CATTATCTGCAGATTATCTG+TGG | + | chr7_2:51340118-51340137 | Msa1061560:intron | 35.0% | |
| TCTGTGGTATAAGAAAATGC+AGG | + | chr7_2:51340134-51340153 | Msa1061560:intron | 35.0% | |
| GAGTGTCATATACTGATGAT+TGG | + | chr7_2:51340197-51340216 | Msa1061560:intron | 35.0% | |
| ATATACTGATGATTGGCACT+AGG | + | chr7_2:51340204-51340223 | Msa1061560:intron | 35.0% | |
| ATCTCAAAAGGAAAATCACC+GGG | - | chr7_2:51340425-51340444 | None:intergenic | 35.0% | |
| GATCTCAAAAGGAAAATCAC+CGG | - | chr7_2:51340426-51340445 | None:intergenic | 35.0% | |
| !!! | TGATTTTCCTTTTGAGATCG+AGG | + | chr7_2:51340427-51340446 | Msa1061560:CDS | 35.0% |
| GTTGAATAGTTCTTTCTCCA+GGG | - | chr7_2:51340457-51340476 | None:intergenic | 35.0% | |
| AGTTGAATAGTTCTTTCTCC+AGG | - | chr7_2:51340458-51340477 | None:intergenic | 35.0% | |
| TATCATTCTCATTCTTCTCG+GGG | - | chr7_2:51340565-51340584 | None:intergenic | 35.0% | |
| CTATCATTCTCATTCTTCTC+GGG | - | chr7_2:51340566-51340585 | None:intergenic | 35.0% | |
| GCTATCATTCTCATTCTTCT+CGG | - | chr7_2:51340567-51340586 | None:intergenic | 35.0% | |
| ! | GTGACTGTTTTCAAAGGAAA+TGG | + | chr7_2:51340608-51340627 | Msa1061560:CDS | 35.0% |
| CTATCAATCACAACTTCATC+AGG | - | chr7_2:51340665-51340684 | None:intergenic | 35.0% | |
| ! | TAGCTTGTCCATAAAGAATC+CGG | + | chr7_2:51340682-51340701 | Msa1061560:CDS | 35.0% |
| AGATTCATCCGGATTCTTTA+TGG | - | chr7_2:51340693-51340712 | None:intergenic | 35.0% | |
| ! | CTGTAAAAAGTTGGTTGTGT+TGG | - | chr7_2:51340898-51340917 | None:intergenic | 35.0% |
| ! | CAACACAACCAACTTTTTAC+AGG | + | chr7_2:51340896-51340915 | Msa1061560:CDS | 35.0% |
| CATGTTCAACAAAGACAACA+AGG | + | chr7_2:51340923-51340942 | Msa1061560:CDS | 35.0% | |
| CAAAGACAACAAGGAATACT+TGG | + | chr7_2:51340932-51340951 | Msa1061560:CDS | 35.0% | |
| AAGACAACAAGGAATACTTG+GGG | + | chr7_2:51340934-51340953 | Msa1061560:CDS | 35.0% | |
| TGTCCTGTAATATGATCTGA+TGG | + | chr7_2:51341082-51341101 | Msa1061560:three_prime_UTR | 35.0% | |
| TATGATCTGATGGTTACTTG+AGG | + | chr7_2:51341092-51341111 | Msa1061560:three_prime_UTR | 35.0% | |
| GGACTCTTGTATTTGATTGA+AGG | - | chr7_2:51341180-51341199 | None:intergenic | 35.0% | |
| !!! | TGTTAGGGTTTTGGGTAATG+GGG | - | chr7_2:51338083-51338102 | None:intergenic | 40.0% |
| !!! | GTGTTAGGGTTTTGGGTAAT+GGG | - | chr7_2:51338084-51338103 | None:intergenic | 40.0% |
| !!! | AGTGTTAGGGTTTTGGGTAA+TGG | - | chr7_2:51338085-51338104 | None:intergenic | 40.0% |
| ! | GGGTTTAGTGTTAGGGTTTT+GGG | - | chr7_2:51338091-51338110 | None:intergenic | 40.0% |
| ! | AGGGTTTAGTGTTAGGGTTT+TGG | - | chr7_2:51338092-51338111 | None:intergenic | 40.0% |
| GGTTTGAGGGTTTAGTGTTA+GGG | - | chr7_2:51338098-51338117 | None:intergenic | 40.0% | |
| !! | ATAGACATTTTGGAGGTGAG+TGG | - | chr7_2:51338128-51338147 | None:intergenic | 40.0% |
| ! | GGTGTACATAGACATTTTGG+AGG | - | chr7_2:51338135-51338154 | None:intergenic | 40.0% |
| ! | AGCGGTGTACATAGACATTT+TGG | - | chr7_2:51338138-51338157 | None:intergenic | 40.0% |
| ! | CACAGTTGATTTCACTGTCA+AGG | - | chr7_2:51338352-51338371 | None:intergenic | 40.0% |
| TGAAATCAACTGTGCTCTTG+AGG | + | chr7_2:51338358-51338377 | Msa1061560:CDS | 40.0% | |
| AGTGTTGTGGTGAATGTTTG+TGG | + | chr7_2:51338659-51338678 | Msa1061560:intron | 40.0% | |
| ATCAAATCCTAAGGTGTGTC+CGG | + | chr7_2:51338777-51338796 | Msa1061560:intron | 40.0% | |
| CAATGACACATGTCAGATAC+CGG | - | chr7_2:51338799-51338818 | None:intergenic | 40.0% | |
| TACTCGTGTTGTCAATGGAT+CGG | + | chr7_2:51338992-51339011 | Msa1061560:intron | 40.0% | |
| CAAGCAGTGTTGTCAAATGT+CGG | - | chr7_2:51339159-51339178 | None:intergenic | 40.0% | |
| ! | GGTTTGTTTCAAGATCAGTC+TGG | + | chr7_2:51339843-51339862 | Msa1061560:intron | 40.0% |
| !! | GATCAGTCTGGTGTTATGTT+TGG | + | chr7_2:51339855-51339874 | Msa1061560:intron | 40.0% |
| TATGTTTGGTATCATGGTGC+TGG | + | chr7_2:51339869-51339888 | Msa1061560:intron | 40.0% | |
| GCAAAGGCTCAAAATCATAG+TGG | - | chr7_2:51339925-51339944 | None:intergenic | 40.0% | |
| ATTGTGGGACAGATCTACAA+GGG | - | chr7_2:51340272-51340291 | None:intergenic | 40.0% | |
| TTGTAGATCTGTCCCACAAT+CGG | + | chr7_2:51340272-51340291 | Msa1061560:CDS | 40.0% | |
| ! | CTTTTCCAGCTTGAATTTCC+CGG | + | chr7_2:51340404-51340423 | Msa1061560:intron | 40.0% |
| CAAAGGAAATGGAGTGTGTA+TGG | + | chr7_2:51340619-51340638 | Msa1061560:CDS | 40.0% | |
| AATGGAGTGTGTATGGAGTT+TGG | + | chr7_2:51340626-51340645 | Msa1061560:CDS | 40.0% | |
| ATGGAGTGTGTATGGAGTTT+GGG | + | chr7_2:51340627-51340646 | Msa1061560:CDS | 40.0% | |
| CTAAATGCTTACGTGAACTC+AGG | - | chr7_2:51340740-51340759 | None:intergenic | 40.0% | |
| TTTGGATGAAAACCTGCAGA+AGG | + | chr7_2:51340836-51340855 | Msa1061560:CDS | 40.0% | |
| !!! | GTTTTGGGTAATGGGGAATC+TGG | - | chr7_2:51338076-51338095 | None:intergenic | 45.0% |
| GGGTTTGAGGGTTTAGTGTT+AGG | - | chr7_2:51338099-51338118 | None:intergenic | 45.0% | |
| TTTGGAGGTGAGTGGAGAAA+GGG | - | chr7_2:51338120-51338139 | None:intergenic | 45.0% | |
| !! | TTTTGGAGGTGAGTGGAGAA+AGG | - | chr7_2:51338121-51338140 | None:intergenic | 45.0% |
| ATTGTGGCGAAGGAGGTTAA+CGG | - | chr7_2:51338246-51338265 | None:intergenic | 45.0% | |
| ! | ACGAGAGGGTACAAAATGAG+TGG | - | chr7_2:51338273-51338292 | None:intergenic | 45.0% |
| !! | TCGAAGGAGAGTATCATCAG+CGG | - | chr7_2:51338327-51338346 | None:intergenic | 45.0% |
| TTTCACTGTCAAGGACTCGA+AGG | - | chr7_2:51338343-51338362 | None:intergenic | 45.0% | |
| TAGTGCTACAGAGTCGGTAT+CGG | - | chr7_2:51338742-51338761 | None:intergenic | 45.0% | |
| ACTCGTGTTGTCAATGGATC+GGG | + | chr7_2:51338993-51339012 | Msa1061560:intron | 45.0% | |
| TCTTGCGCTGTTACTAGTTC+AGG | - | chr7_2:51339401-51339420 | None:intergenic | 45.0% | |
| GAACAACGACAGCAGTTATG+AGG | - | chr7_2:51339540-51339559 | None:intergenic | 45.0% | |
| TCAAAATCATAGTGGCTCCG+TGG | - | chr7_2:51339917-51339936 | None:intergenic | 45.0% | |
| GATTGTGGGACAGATCTACA+AGG | - | chr7_2:51340273-51340292 | None:intergenic | 45.0% | |
| ! | TCCCACAATCGGTCTTTTTC+AGG | + | chr7_2:51340283-51340302 | Msa1061560:CDS | 45.0% |
| CCCTGAAAAAGACCGATTGT+GGG | - | chr7_2:51340287-51340306 | None:intergenic | 45.0% | |
| !! | CCCACAATCGGTCTTTTTCA+GGG | + | chr7_2:51340284-51340303 | Msa1061560:CDS | 45.0% |
| !!! | CCACAATCGGTCTTTTTCAG+GGG | + | chr7_2:51340285-51340304 | Msa1061560:CDS | 45.0% |
| AATCACCGGGAAATTCAAGC+TGG | - | chr7_2:51340412-51340431 | None:intergenic | 45.0% | |
| !! | TCAAGTTGACATCCCTAACG+TGG | + | chr7_2:51340511-51340530 | Msa1061560:CDS | 45.0% |
| TGGAGTGTGTATGGAGTTTG+GGG | + | chr7_2:51340628-51340647 | Msa1061560:CDS | 45.0% | |
| !! | AGCTGGTCTTCAGATTCATC+CGG | - | chr7_2:51340704-51340723 | None:intergenic | 45.0% |
| TGAAGACCAGCTGGTATATG+AGG | + | chr7_2:51340712-51340731 | Msa1061560:CDS | 45.0% | |
| GAAGACCAGCTGGTATATGA+GGG | + | chr7_2:51340713-51340732 | Msa1061560:CDS | 45.0% | |
| ACTTGAGAAAAGCCTTCTGC+AGG | - | chr7_2:51340851-51340870 | None:intergenic | 45.0% | |
| TCAAGTATCTCGAGATCCGA+GGG | + | chr7_2:51340865-51340884 | Msa1061560:CDS | 45.0% | |
| ! | TTGTGTTGGGTGTTATCCCT+CGG | - | chr7_2:51340884-51340903 | None:intergenic | 45.0% |
| ACAACAAGGAATACTTGGGG+TGG | + | chr7_2:51340937-51340956 | Msa1061560:CDS | 45.0% | |
| GAGTGGAGAAAGGGGTTTGA+GGG | - | chr7_2:51338111-51338130 | None:intergenic | 50.0% | |
| TGAGTGGAGAAAGGGGTTTG+AGG | - | chr7_2:51338112-51338131 | None:intergenic | 50.0% | |
| TTGGAGGTGAGTGGAGAAAG+GGG | - | chr7_2:51338119-51338138 | None:intergenic | 50.0% | |
| TGGTTTCATTGTGGCGAAGG+AGG | - | chr7_2:51338253-51338272 | None:intergenic | 50.0% | |
| GAGTGGTTTCATTGTGGCGA+AGG | - | chr7_2:51338256-51338275 | None:intergenic | 50.0% | |
| !! | AAGGAGAGTATCATCAGCGG+GGG | - | chr7_2:51338324-51338343 | None:intergenic | 50.0% |
| !! | GAAGGAGAGTATCATCAGCG+GGG | - | chr7_2:51338325-51338344 | None:intergenic | 50.0% |
| !! | CGAAGGAGAGTATCATCAGC+GGG | - | chr7_2:51338326-51338345 | None:intergenic | 50.0% |
| TCAGATACCGGACACACCTT+AGG | - | chr7_2:51338787-51338806 | None:intergenic | 50.0% | |
| CACATGTGTCAGTGTAGCGT+CGG | - | chr7_2:51338825-51338844 | None:intergenic | 50.0% | |
| CTCGTGTTGTCAATGGATCG+GGG | + | chr7_2:51338994-51339013 | Msa1061560:intron | 50.0% | |
| ! | GTTTGGTATCATGGTGCTGG+TGG | + | chr7_2:51339872-51339891 | Msa1061560:intron | 50.0% |
| TCATAGTGGCTCCGTGGTTT+CGG | - | chr7_2:51339911-51339930 | None:intergenic | 50.0% | |
| GAGCCTTTGCTAAACCACAG+TGG | + | chr7_2:51339935-51339954 | Msa1061560:intron | 50.0% | |
| GAGCCACTGTGGTTTAGCAA+AGG | - | chr7_2:51339941-51339960 | None:intergenic | 50.0% | |
| TAAACCACAGTGGCTCACTG+CGG | + | chr7_2:51339945-51339964 | Msa1061560:intron | 50.0% | |
| CCCCTGAAAAAGACCGATTG+TGG | - | chr7_2:51340288-51340307 | None:intergenic | 50.0% | |
| !!! | ATCGGTCTTTTTCAGGGGTC+AGG | + | chr7_2:51340290-51340309 | Msa1061560:intron | 50.0% |
| GGGTTGTCCTCGATCTCAAA+AGG | - | chr7_2:51340437-51340456 | None:intergenic | 50.0% | |
| ! | TTTGAGATCGAGGACAACCC+TGG | + | chr7_2:51340437-51340456 | Msa1061560:CDS | 50.0% |
| ! | TCTGTTGAGGTGCCACGTTA+GGG | - | chr7_2:51340526-51340545 | None:intergenic | 50.0% |
| ACCTCAACAGAGTGAGGATG+AGG | + | chr7_2:51340535-51340554 | Msa1061560:CDS | 50.0% | |
| GGATGAATCTGAAGACCAGC+TGG | + | chr7_2:51340703-51340722 | Msa1061560:CDS | 50.0% | |
| CTCAAGTATCTCGAGATCCG+AGG | + | chr7_2:51340864-51340883 | Msa1061560:CDS | 50.0% | |
| GATTGCGCTGTGGAAGGTTC+TGG | - | chr7_2:51338222-51338241 | None:intergenic | 55.0% | |
| CCGTAAGCGAAGCTACGAGA+GGG | - | chr7_2:51338287-51338306 | None:intergenic | 55.0% | |
| CCCTCTCGTAGCTTCGCTTA+CGG | + | chr7_2:51338284-51338303 | Msa1061560:CDS | 55.0% | |
| GGGTGCTAGTGCTACAGAGT+CGG | - | chr7_2:51338748-51338767 | None:intergenic | 55.0% | |
| TAGTGGCGCTGTAGCACTGT+AGG | - | chr7_2:51339046-51339065 | None:intergenic | 55.0% | |
| TTGCGCCTTTGCCGAAACCA+CGG | + | chr7_2:51339897-51339916 | Msa1061560:intron | 55.0% | |
| ACAGTGGCTCACTGCGGTTT+GGG | + | chr7_2:51339951-51339970 | Msa1061560:intron | 55.0% | |
| ! | CTCTGTTGAGGTGCCACGTT+AGG | - | chr7_2:51340527-51340546 | None:intergenic | 55.0% |
| GCCTCATCCTCACTCTGTTG+AGG | - | chr7_2:51340539-51340558 | None:intergenic | 55.0% | |
| CAGGTCCCTCATATACCAGC+TGG | - | chr7_2:51340721-51340740 | None:intergenic | 55.0% | |
| TGGAGGAAGTTGCCGCTGCA+CGG | - | chr7_2:51338202-51338221 | None:intergenic | 60.0% | |
| ! | TGCGCTGTGGAAGGTTCTGG+AGG | - | chr7_2:51338219-51338238 | None:intergenic | 60.0% |
| AACGGCGATTGCGCTGTGGA+AGG | - | chr7_2:51338228-51338247 | None:intergenic | 60.0% | |
| GGTTAACGGCGATTGCGCTG+TGG | - | chr7_2:51338232-51338251 | None:intergenic | 60.0% | |
| GCCGTAAGCGAAGCTACGAG+AGG | - | chr7_2:51338288-51338307 | None:intergenic | 60.0% | |
| TGGCTCCGTGGTTTCGGCAA+AGG | - | chr7_2:51339905-51339924 | None:intergenic | 60.0% | |
| CAAACCGCAGTGAGCCACTG+TGG | - | chr7_2:51339952-51339971 | None:intergenic | 60.0% | |
| CACAGTGGCTCACTGCGGTT+TGG | + | chr7_2:51339950-51339969 | Msa1061560:intron | 60.0% | |
| CGTGGCACCTCAACAGAGTG+AGG | + | chr7_2:51340529-51340548 | Msa1061560:CDS | 60.0% | |
| ! | AGAGAGGAGAGGGAGTGCGG+CGG | - | chr7_2:51338177-51338196 | None:intergenic | 65.0% |
| GCGAGAGAGGAGAGGGAGTG+CGG | - | chr7_2:51338180-51338199 | None:intergenic | 65.0% | |
| CTGCACGGCGAGAGAGGAGA+GGG | - | chr7_2:51338187-51338206 | None:intergenic | 65.0% | |
| TCTCCTCTCTCGCCGTGCAG+CGG | + | chr7_2:51338187-51338206 | Msa1061560:CDS | 65.0% | |
| GCTGCACGGCGAGAGAGGAG+AGG | - | chr7_2:51338188-51338207 | None:intergenic | 70.0% | |
| TTGCCGCTGCACGGCGAGAG+AGG | - | chr7_2:51338193-51338212 | None:intergenic | 70.0% | |
| ! | GAGGAGAGGGAGTGCGGCGG+CGG | - | chr7_2:51338174-51338193 | None:intergenic | 75.0% |
| ! | GGCGGTGGCGCGACGGAGAG+CGG | - | chr7_2:51338156-51338175 | None:intergenic | 80.0% |
| !! | GAGAGGGAGTGCGGCGGCGG+TGG | - | chr7_2:51338171-51338190 | None:intergenic | 80.0% |
| ! | GTGCGGCGGCGGTGGCGCGA+CGG | - | chr7_2:51338163-51338182 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 51338072 | 51341270 | 51338072 | ID=Msa1061560;Name=Msa1061560 |
| chr7_2 | mRNA | 51338072 | 51341270 | 51338072 | ID=Msa1061560-mRNA-1;Parent=Msa1061560;Name=Msa1061560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=68|0.33|0.75|1|1|1|4|278|280 |
| chr7_2 | exon | 51338072 | 51338406 | 51338072 | ID=Msa1061560-mRNA-1:exon:9281;Parent=Msa1061560-mRNA-1 |
| chr7_2 | exon | 51340226 | 51340306 | 51340226 | ID=Msa1061560-mRNA-1:exon:9282;Parent=Msa1061560-mRNA-1 |
| chr7_2 | exon | 51340413 | 51340747 | 51340413 | ID=Msa1061560-mRNA-1:exon:9283;Parent=Msa1061560-mRNA-1 |
| chr7_2 | exon | 51340833 | 51341270 | 51340833 | ID=Msa1061560-mRNA-1:exon:9284;Parent=Msa1061560-mRNA-1 |
| chr7_2 | five_prime_UTR | 51338072 | 51338139 | 51338072 | ID=Msa1061560-mRNA-1:five_prime_utr;Parent=Msa1061560-mRNA-1 |
| chr7_2 | CDS | 51338140 | 51338406 | 51338140 | ID=Msa1061560-mRNA-1:cds;Parent=Msa1061560-mRNA-1 |
| chr7_2 | CDS | 51340226 | 51340306 | 51340226 | ID=Msa1061560-mRNA-1:cds;Parent=Msa1061560-mRNA-1 |
| chr7_2 | CDS | 51340413 | 51340747 | 51340413 | ID=Msa1061560-mRNA-1:cds;Parent=Msa1061560-mRNA-1 |
| chr7_2 | CDS | 51340833 | 51340992 | 51340833 | ID=Msa1061560-mRNA-1:cds;Parent=Msa1061560-mRNA-1 |
| chr7_2 | three_prime_UTR | 51340993 | 51341270 | 51340993 | ID=Msa1061560-mRNA-1:three_prime_utr;Parent=Msa1061560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
