AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1031740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1031740 MtrunA17_Chr7g0253321 98.515 202 3 0 1 202 1 202 1.77e-129 362
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1031740 AT3G03920.1 81.579 152 28 0 51 202 51 202 7.61e-66 201
Msa1031740 AT5G18180.1 83.962 106 16 1 51 156 38 142 4.48e-59 184

Find 109 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGACGTGGTGGTGGTTTC+AGG 0.152779 7_1:-66448434 Msa1031740:CDS
AAACTTTAACTTCCGGGTTT+AGG 0.222550 7_1:+66450123 None:intergenic
AACTTTAACTTCCGGGTTTA+GGG 0.273788 7_1:+66450124 None:intergenic
GGGAAAGTCGATGAAATATT+TGG 0.274082 7_1:-66449636 Msa1031740:CDS
CAACTAATATTACATGAAAT+TGG 0.274918 7_1:+66448386 None:intergenic
CCACGGCCGCCACCTCTTGC+AGG 0.283854 7_1:+66450031 None:intergenic
CAGGGGAAGGGGCAGATTCT+AGG 0.306220 7_1:-66448415 Msa1031740:exon
AGAGGTGGCGGCCGTGGTGG+TGG 0.384933 7_1:-66450025 Msa1031740:CDS
ATCAAAAGCACAAGTTTAGA+TGG 0.393461 7_1:+66448179 None:intergenic
GCTAGAGGCAAGAGCTTCCT+AGG 0.395733 7_1:+66449436 None:intergenic
ATCACCATGGTAGGGATGAT+AGG 0.397702 7_1:-66448220 Msa1031740:three_prime_UTR
CTGCAAAACATGACTCAGAT+TGG 0.398576 7_1:-66449657 Msa1031740:CDS
AGAGAGAAACTTTAACTTCC+GGG 0.399904 7_1:+66450117 None:intergenic
CCTGCAAGAGGTGGCGGCCG+TGG 0.400024 7_1:-66450031 Msa1031740:CDS
AGAGGTGGTGGCCGTGGAGG+TGG 0.402289 7_1:-66448507 Msa1031740:CDS
TTTGGATGATCGATCACATA+TGG 0.402481 7_1:-66448343 Msa1031740:three_prime_UTR
GGTGGTGGTTTCAGGGGAAG+GGG 0.406506 7_1:-66448426 Msa1031740:CDS
TATTTAACTTCTGAATTGAA+TGG 0.410114 7_1:-66448286 Msa1031740:three_prime_UTR
TGTACTTTAATCGTTTCGTT+TGG 0.416142 7_1:-66448361 Msa1031740:three_prime_UTR
AGAGGTGGAGGCCGTGGAGG+TGG 0.421064 7_1:-66448540 Msa1031740:CDS
AGCTGAGCTTCAACAATGGC+GGG 0.425235 7_1:+66450092 None:intergenic
CAGAGAGAAACTTTAACTTC+CGG 0.427083 7_1:+66450116 None:intergenic
GTTGCTACTTCATATGCATC+TGG 0.429953 7_1:-66449478 Msa1031740:CDS
GGTGGTAGAGGTGGAGGCCG+TGG 0.431868 7_1:-66448546 Msa1031740:CDS
GTGGTGGTGGTTTCAGGGGA+AGG 0.432062 7_1:-66448428 Msa1031740:CDS
TTCGGCGGTGGACGTGGTGG+TGG 0.435593 7_1:-66449926 Msa1031740:CDS
TATTGCAGGGGACAAGCATC+AGG 0.437663 7_1:-66448567 Msa1031740:intron
TCGTGGAAGGGGTCCTCCAA+GGG 0.439215 7_1:-66448478 Msa1031740:CDS
TACAATTGAAGATTAGCTGC+TGG 0.440920 7_1:-66448319 Msa1031740:three_prime_UTR
GGTGGAGGCCGTGGAGGTGG+TGG 0.442100 7_1:-66448537 Msa1031740:CDS
TTCAGTAGAGGTGGTGGCCG+TGG 0.444407 7_1:-66448513 Msa1031740:CDS
GGTGGTGGCCGTGGAGGTGG+TGG 0.449672 7_1:-66448504 Msa1031740:CDS
GGTCGATTCGGCGGTGGACG+TGG 0.450036 7_1:-66449932 Msa1031740:CDS
CACGGCCGCCACCTCTTGCA+GGG 0.459887 7_1:+66450032 None:intergenic
GGACGTGGTGGTGGTCGATT+CGG 0.462851 7_1:-66449944 Msa1031740:CDS
GGCGGTGGACGTGGTGGTGG+AGG 0.463762 7_1:-66449923 Msa1031740:CDS
TGGTGGTGGTTTCAGGGGAA+GGG 0.471183 7_1:-66448427 Msa1031740:CDS
TTCGTGGAAGGGGTCCTCCA+AGG 0.472505 7_1:-66448479 Msa1031740:CDS
TGCAAAACATGACTCAGATT+GGG 0.474986 7_1:-66449656 Msa1031740:CDS
GGTGGACGTGGTGGTGGAGG+TGG 0.479988 7_1:-66449920 Msa1031740:CDS
CCAGAGTGATTAAGGTAGGT+TGG 0.480838 7_1:+66448140 None:intergenic
GGAGGACCTCTTCCACCCCT+TGG 0.482432 7_1:+66448462 None:intergenic
TGGACGTGGTGGTGGTTTCA+GGG 0.482520 7_1:-66448433 Msa1031740:CDS
GGACCTCCCTCCGAAGTTGT+AGG 0.483894 7_1:-66449884 Msa1031740:intron
CCTAGAGGTGGACGTGGTGG+TGG 0.489017 7_1:-66448441 Msa1031740:CDS
GGTCCTCCAAGGGGTGGAAG+AGG 0.498835 7_1:-66448468 Msa1031740:CDS
GGCCGTGGTGGTGGATTCAG+AGG 0.507562 7_1:-66450016 Msa1031740:CDS
GAAACTCACAGATTCATTGA+TGG 0.508035 7_1:+66449611 None:intergenic
GGACCTCTTCCACCCCTTGG+AGG 0.510321 7_1:+66448465 None:intergenic
GGACAAGCATCAGGTGGTAG+AGG 0.524486 7_1:-66448558 Msa1031740:CDS
TTTCTATTAAAATGATGGAA+GGG 0.525814 7_1:-66449504 Msa1031740:CDS
AGGGGAAGGGGCAGATTCTA+GGG 0.527082 7_1:-66448414 Msa1031740:exon
TACCCACGAACCTACAACTT+CGG 0.527744 7_1:+66449874 None:intergenic
TGTAACAGCATCTCCTTCAC+AGG 0.530540 7_1:+66449725 None:intergenic
GCATCAGGTGGTAGAGGTGG+AGG 0.530555 7_1:-66448552 Msa1031740:CDS
AATATAAGCTAACACACAAA+GGG 0.531380 7_1:+66448261 None:intergenic
ACGTTTATCCATGCCTGTGA+AGG 0.532059 7_1:-66449738 Msa1031740:CDS
GCAAGAGGTGGCGGCCGTGG+TGG 0.532210 7_1:-66450028 Msa1031740:CDS
CCACCACCACGTCCACCTCT+AGG 0.534558 7_1:+66448441 None:intergenic
TATCAACTTATCACCATGGT+AGG 0.536867 7_1:-66448229 Msa1031740:three_prime_UTR
CAAGCATCAGGTGGTAGAGG+TGG 0.537811 7_1:-66448555 Msa1031740:CDS
TCACCATGGTAGGGATGATA+GGG 0.539556 7_1:-66448219 Msa1031740:three_prime_UTR
GGATTCAGAGGTGGCCGAGA+TGG 0.541387 7_1:-66450004 Msa1031740:CDS
GGAAGGGGTCCTCCAAGGGG+TGG 0.541847 7_1:-66448474 Msa1031740:CDS
CAGCATCTCCTTCACAGGCA+TGG 0.542692 7_1:+66449730 None:intergenic
TTCAGAGGTGGCCGAGATGG+TGG 0.544595 7_1:-66450001 Msa1031740:CDS
GGATTCAGAGGTGGTCGTGA+TGG 0.545084 7_1:-66449980 Msa1031740:CDS
GGTGGTGGTCGATTCGGCGG+TGG 0.547225 7_1:-66449938 Msa1031740:CDS
GGTAGAGGTGGAGGCCGTGG+AGG 0.559108 7_1:-66448543 Msa1031740:CDS
AGAGGTGGTCGTGATGGAGG+AGG 0.560037 7_1:-66449974 Msa1031740:CDS
TTCAGAGGTGGTCGTGATGG+AGG 0.569077 7_1:-66449977 Msa1031740:CDS
ACGGCCGCCACCTCTTGCAG+GGG 0.569761 7_1:+66450033 None:intergenic
GGAGGTGGTGGTTTCAGTAG+AGG 0.571868 7_1:-66448525 Msa1031740:CDS
CACGAACCTACAACTTCGGA+GGG 0.573435 7_1:+66449878 None:intergenic
CGTGGTGGTGGTCGATTCGG+CGG 0.575172 7_1:-66449941 Msa1031740:CDS
GGTGGTTTCAGTAGAGGTGG+TGG 0.576196 7_1:-66448519 Msa1031740:CDS
GGTGGTGGTTTCAGTAGAGG+TGG 0.576234 7_1:-66448522 Msa1031740:CDS
AAACTCACAGATTCATTGAT+GGG 0.576692 7_1:+66449612 None:intergenic
GGCCGAGATGGTGGATTCAG+AGG 0.581009 7_1:-66449992 Msa1031740:CDS
GGAGGTGGATTTCGTGATGA+AGG 0.587672 7_1:-66449905 Msa1031740:CDS
GTGAGAACATACTTCGGCTG+AGG 0.591544 7_1:+66449403 None:intergenic
ATCAACTTATCACCATGGTA+GGG 0.594862 7_1:-66448228 Msa1031740:three_prime_UTR
CAATATAAGCTAACACACAA+AGG 0.595462 7_1:+66448260 None:intergenic
CACGAAAACCACCACCTCCA+CGG 0.595827 7_1:+66448496 None:intergenic
CATCACTAAAACCCTAAACC+CGG 0.597117 7_1:-66450135 Msa1031740:five_prime_UTR
GAGCTGAGCTTCAACAATGG+CGG 0.600723 7_1:+66450091 None:intergenic
CGATTCGGCGGTGGACGTGG+TGG 0.605050 7_1:-66449929 Msa1031740:CDS
CCACGAACCTACAACTTCGG+AGG 0.605907 7_1:+66449877 None:intergenic
AGTAGAGGTGGTGGCCGTGG+AGG 0.611241 7_1:-66448510 Msa1031740:CDS
CGTGGAAGGGGTCCTCCAAG+GGG 0.615580 7_1:-66448477 Msa1031740:CDS
TGTGAGCTGAGCTTCAACAA+TGG 0.617450 7_1:+66450088 None:intergenic
GGAAGAGGTCCTCCTAGAGG+TGG 0.618183 7_1:-66448453 Msa1031740:CDS
TACTGAAACCACCACCTCCA+CGG 0.622081 7_1:+66448529 None:intergenic
CGAGATGGTGGATTCAGAGG+TGG 0.625804 7_1:-66449989 Msa1031740:CDS
CCTCCTAGAGGTGGACGTGG+TGG 0.626967 7_1:-66448444 Msa1031740:CDS
CACCTCTGAATCCACCATCT+CGG 0.628054 7_1:+66449990 None:intergenic
CTAGAGGCAAGAGCTTCCTA+GGG 0.630481 7_1:+66449437 None:intergenic
GGACGTGGTGGTGGTTTCAG+GGG 0.633942 7_1:-66448432 Msa1031740:CDS
TGAGGAAGAAATCTTGCTAG+AGG 0.638685 7_1:+66449421 None:intergenic
CGTGGTGGTGGATTCAGAGG+TGG 0.644993 7_1:-66450013 Msa1031740:CDS
GGTCCTCCTAGAGGTGGACG+TGG 0.648071 7_1:-66448447 Msa1031740:CDS
CCACCACGTCCACCTCTAGG+AGG 0.651196 7_1:+66448444 None:intergenic
GGTGGAAGAGGTCCTCCTAG+AGG 0.656466 7_1:-66448456 Msa1031740:CDS
GAACCTACAACTTCGGAGGG+AGG 0.658354 7_1:+66449881 None:intergenic
GCTGAGCTTCAACAATGGCG+GGG 0.660274 7_1:+66450093 None:intergenic
CTACCCTATCATCCCTACCA+TGG 0.660800 7_1:+66448216 None:intergenic
ATGTTATCAACTTATCACCA+TGG 0.669533 7_1:-66448233 Msa1031740:three_prime_UTR
TGCAGGGGACAAGCATCAGG+TGG 0.672433 7_1:-66448564 Msa1031740:intron
CACCTCTGAATCCACCACCA+CGG 0.697043 7_1:+66450014 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAACAAGTAAATTAATT+AGG + chr7_1:66448991-66449010 None:intergenic 15.0%
!! CATAAACAAGTAAATTAATT+AGG + chr7_1:66448991-66449010 None:intergenic 15.0%
!!! AAAAAATGGAATTTTCTCAT+TGG + chr7_1:66448597-66448616 None:intergenic 20.0%
!!! TAAATAGGAGCATTAAAAAA+TGG + chr7_1:66448611-66448630 None:intergenic 20.0%
!!! TCTTATATGTTTTGTTGAAA+TGG - chr7_1:66448723-66448742 Msa1031740:intron 20.0%
!!! CTTATATGTTTTGTTGAAAT+GGG - chr7_1:66448724-66448743 Msa1031740:intron 20.0%
!!! GTACTTTTCTATTAAAATGA+TGG - chr7_1:66448780-66448799 Msa1031740:intron 20.0%
!!! TTTTCTATTAAAATGATGGA+AGG - chr7_1:66448784-66448803 Msa1031740:intron 20.0%
!!! TTTCTATTAAAATGATGGAA+GGG - chr7_1:66448785-66448804 Msa1031740:intron 20.0%
!! GATTATACTTGTTTGTTTAA+AGG - chr7_1:66449357-66449376 Msa1031740:intron 20.0%
!! CAACTAATATTACATGAAAT+TGG + chr7_1:66449906-66449925 None:intergenic 20.0%
!!! TATTTAACTTCTGAATTGAA+TGG - chr7_1:66450003-66450022 Msa1031740:CDS 20.0%
!!! AAAAAATGGAATTTTCTCAT+TGG + chr7_1:66448597-66448616 None:intergenic 20.0%
!!! TAAATAGGAGCATTAAAAAA+TGG + chr7_1:66448611-66448630 None:intergenic 20.0%
!!! TCTTATATGTTTTGTTGAAA+TGG - chr7_1:66448723-66448742 Msa1031740:intron 20.0%
!!! CTTATATGTTTTGTTGAAAT+GGG - chr7_1:66448724-66448743 Msa1031740:intron 20.0%
!!! GTACTTTTCTATTAAAATGA+TGG - chr7_1:66448780-66448799 Msa1031740:intron 20.0%
!!! TTTTCTATTAAAATGATGGA+AGG - chr7_1:66448784-66448803 Msa1031740:intron 20.0%
!!! TTTCTATTAAAATGATGGAA+GGG - chr7_1:66448785-66448804 Msa1031740:intron 20.0%
!! GATTATACTTGTTTGTTTAA+AGG - chr7_1:66449357-66449376 Msa1031740:intron 20.0%
!! CAACTAATATTACATGAAAT+TGG + chr7_1:66449906-66449925 None:intergenic 20.0%
!!! TATTTAACTTCTGAATTGAA+TGG - chr7_1:66450003-66450022 Msa1031740:CDS 20.0%
!! ACTTAGACAGGTTAATTTTA+AGG + chr7_1:66448914-66448933 None:intergenic 25.0%
!! ATTGTACAGTTGATGTTAAA+TGG - chr7_1:66448934-66448953 Msa1031740:intron 25.0%
!! TTGTACAGTTGATGTTAAAT+GGG - chr7_1:66448935-66448954 Msa1031740:intron 25.0%
! CATATGAAATAAATCAGTAG+AGG + chr7_1:66449186-66449205 None:intergenic 25.0%
! TTTAGGTAATAATAGAAGCA+TGG + chr7_1:66449266-66449285 None:intergenic 25.0%
! TCACAAGCAATCATTAATTT+AGG + chr7_1:66449283-66449302 None:intergenic 25.0%
! TTAAAGGATTCTTAGTGTTA+TGG - chr7_1:66449373-66449392 Msa1031740:intron 25.0%
!! CTAGGATCAAAAACTAATTT+TGG + chr7_1:66449518-66449537 None:intergenic 25.0%
! TAATTAACACAAGGAAATGT+GGG + chr7_1:66449578-66449597 None:intergenic 25.0%
! ATAATTAACACAAGGAAATG+TGG + chr7_1:66449579-66449598 None:intergenic 25.0%
! TGCATACAATAATTAACACA+AGG + chr7_1:66449587-66449606 None:intergenic 25.0%
! AATTAATTGTTGTATGCAGT+TGG - chr7_1:66449623-66449642 Msa1031740:CDS 25.0%
!!! ATTTTTTGTTGGCTTTTGAA+AGG - chr7_1:66449659-66449678 Msa1031740:CDS 25.0%
!!! TTTTTTGTTGGCTTTTGAAA+GGG - chr7_1:66449660-66449679 Msa1031740:CDS 25.0%
! AATTGACTGATTATTATTGC+AGG - chr7_1:66449708-66449727 Msa1031740:CDS 25.0%
! ATTGACTGATTATTATTGCA+GGG - chr7_1:66449709-66449728 Msa1031740:CDS 25.0%
! AATATAAGCTAACACACAAA+GGG + chr7_1:66450031-66450050 None:intergenic 25.0%
!! ACTTAGACAGGTTAATTTTA+AGG + chr7_1:66448914-66448933 None:intergenic 25.0%
!! ATTGTACAGTTGATGTTAAA+TGG - chr7_1:66448934-66448953 Msa1031740:intron 25.0%
!! TTGTACAGTTGATGTTAAAT+GGG - chr7_1:66448935-66448954 Msa1031740:intron 25.0%
! CATATGAAATAAATCAGTAG+AGG + chr7_1:66449186-66449205 None:intergenic 25.0%
! TTTAGGTAATAATAGAAGCA+TGG + chr7_1:66449266-66449285 None:intergenic 25.0%
! TCACAAGCAATCATTAATTT+AGG + chr7_1:66449283-66449302 None:intergenic 25.0%
! TTAAAGGATTCTTAGTGTTA+TGG - chr7_1:66449373-66449392 Msa1031740:intron 25.0%
!! CTAGGATCAAAAACTAATTT+TGG + chr7_1:66449518-66449537 None:intergenic 25.0%
! TAATTAACACAAGGAAATGT+GGG + chr7_1:66449578-66449597 None:intergenic 25.0%
! ATAATTAACACAAGGAAATG+TGG + chr7_1:66449579-66449598 None:intergenic 25.0%
! TGCATACAATAATTAACACA+AGG + chr7_1:66449587-66449606 None:intergenic 25.0%
! AATTAATTGTTGTATGCAGT+TGG - chr7_1:66449623-66449642 Msa1031740:CDS 25.0%
!!! ATTTTTTGTTGGCTTTTGAA+AGG - chr7_1:66449659-66449678 Msa1031740:CDS 25.0%
!!! TTTTTTGTTGGCTTTTGAAA+GGG - chr7_1:66449660-66449679 Msa1031740:CDS 25.0%
! AATTGACTGATTATTATTGC+AGG - chr7_1:66449708-66449727 Msa1031740:CDS 25.0%
! ATTGACTGATTATTATTGCA+GGG - chr7_1:66449709-66449728 Msa1031740:CDS 25.0%
! AATATAAGCTAACACACAAA+GGG + chr7_1:66450031-66450050 None:intergenic 25.0%
!! GTTTAATTTGATGTTTGCAG+AGG - chr7_1:66448523-66448542 Msa1031740:CDS 30.0%
! GTCATGTTTTGCAGATAAAT+AGG + chr7_1:66448626-66448645 None:intergenic 30.0%
AAACTCACAGATTCATTGAT+GGG + chr7_1:66448680-66448699 None:intergenic 30.0%
! CTATTTCTTGATTGCTATGT+TGG - chr7_1:66449053-66449072 Msa1031740:intron 30.0%
AAAATTAGACATTTGCAGCA+TGG + chr7_1:66449433-66449452 None:intergenic 30.0%
TTGACTGATTATTATTGCAG+GGG - chr7_1:66449710-66449729 Msa1031740:CDS 30.0%
TGTACTTTAATCGTTTCGTT+TGG - chr7_1:66449928-66449947 Msa1031740:CDS 30.0%
CAATATAAGCTAACACACAA+AGG + chr7_1:66450032-66450051 None:intergenic 30.0%
ATGTTATCAACTTATCACCA+TGG - chr7_1:66450056-66450075 Msa1031740:exon 30.0%
! ATCAAAAGCACAAGTTTAGA+TGG + chr7_1:66450113-66450132 None:intergenic 30.0%
!! TTTAGGGTTTTAGTGATGAA+AGG + chr7_1:66448152-66448171 None:intergenic 30.0%
!! GTTTAATTTGATGTTTGCAG+AGG - chr7_1:66448523-66448542 Msa1031740:CDS 30.0%
! GTCATGTTTTGCAGATAAAT+AGG + chr7_1:66448626-66448645 None:intergenic 30.0%
AAACTCACAGATTCATTGAT+GGG + chr7_1:66448680-66448699 None:intergenic 30.0%
! CTATTTCTTGATTGCTATGT+TGG - chr7_1:66449053-66449072 Msa1031740:intron 30.0%
AAAATTAGACATTTGCAGCA+TGG + chr7_1:66449433-66449452 None:intergenic 30.0%
TTGACTGATTATTATTGCAG+GGG - chr7_1:66449710-66449729 Msa1031740:CDS 30.0%
TGTACTTTAATCGTTTCGTT+TGG - chr7_1:66449928-66449947 Msa1031740:CDS 30.0%
CAATATAAGCTAACACACAA+AGG + chr7_1:66450032-66450051 None:intergenic 30.0%
ATGTTATCAACTTATCACCA+TGG - chr7_1:66450056-66450075 Msa1031740:exon 30.0%
! ATCAAAAGCACAAGTTTAGA+TGG + chr7_1:66450113-66450132 None:intergenic 30.0%
! AACTTTAACTTCCGGGTTTA+GGG + chr7_1:66448168-66448187 None:intergenic 35.0%
! AAACTTTAACTTCCGGGTTT+AGG + chr7_1:66448169-66448188 None:intergenic 35.0%
! AGAGAGAAACTTTAACTTCC+GGG + chr7_1:66448175-66448194 None:intergenic 35.0%
! CAGAGAGAAACTTTAACTTC+CGG + chr7_1:66448176-66448195 None:intergenic 35.0%
TGCAAAACATGACTCAGATT+GGG - chr7_1:66448633-66448652 Msa1031740:intron 35.0%
GGGAAAGTCGATGAAATATT+TGG - chr7_1:66448653-66448672 Msa1031740:intron 35.0%
GAAACTCACAGATTCATTGA+TGG + chr7_1:66448681-66448700 None:intergenic 35.0%
ATCTGTGAGTTTCTCTTTGT+TGG - chr7_1:66448688-66448707 Msa1031740:intron 35.0%
! ACAAGTTTTACATTGACCCT+AGG - chr7_1:66448836-66448855 Msa1031740:intron 35.0%
CAACTGTACAATACTTAGAC+AGG + chr7_1:66448926-66448945 None:intergenic 35.0%
CAGTTCACATATTCTTCAGA+TGG + chr7_1:66449143-66449162 None:intergenic 35.0%
GCAGATTACATCAAGACAAA+AGG + chr7_1:66449334-66449353 None:intergenic 35.0%
CTAATGCATGTTGAACAACA+AGG + chr7_1:66449409-66449428 None:intergenic 35.0%
!! TGTCTAATTTTGAGTGTGAG+AGG - chr7_1:66449442-66449461 Msa1031740:CDS 35.0%
!! GTCTAATTTTGAGTGTGAGA+GGG - chr7_1:66449443-66449462 Msa1031740:CDS 35.0%
AGCATATTGAGGATATAGCT+AGG + chr7_1:66449536-66449555 None:intergenic 35.0%
GGTTACATTCTAGCATATTG+AGG + chr7_1:66449547-66449566 None:intergenic 35.0%
!!! CTATGCGTGGAATTTTTTGT+TGG - chr7_1:66449648-66449667 Msa1031740:CDS 35.0%
TTTGGATGATCGATCACATA+TGG - chr7_1:66449946-66449965 Msa1031740:CDS 35.0%
! TACAATTGAAGATTAGCTGC+TGG - chr7_1:66449970-66449989 Msa1031740:CDS 35.0%
TATCAACTTATCACCATGGT+AGG - chr7_1:66450060-66450079 Msa1031740:exon 35.0%
ATCAACTTATCACCATGGTA+GGG - chr7_1:66450061-66450080 Msa1031740:exon 35.0%
! AACTTTAACTTCCGGGTTTA+GGG + chr7_1:66448168-66448187 None:intergenic 35.0%
! AAACTTTAACTTCCGGGTTT+AGG + chr7_1:66448169-66448188 None:intergenic 35.0%
! AGAGAGAAACTTTAACTTCC+GGG + chr7_1:66448175-66448194 None:intergenic 35.0%
! CAGAGAGAAACTTTAACTTC+CGG + chr7_1:66448176-66448195 None:intergenic 35.0%
TGCAAAACATGACTCAGATT+GGG - chr7_1:66448633-66448652 Msa1031740:intron 35.0%
GGGAAAGTCGATGAAATATT+TGG - chr7_1:66448653-66448672 Msa1031740:intron 35.0%
GAAACTCACAGATTCATTGA+TGG + chr7_1:66448681-66448700 None:intergenic 35.0%
ATCTGTGAGTTTCTCTTTGT+TGG - chr7_1:66448688-66448707 Msa1031740:intron 35.0%
! ACAAGTTTTACATTGACCCT+AGG - chr7_1:66448836-66448855 Msa1031740:intron 35.0%
CAACTGTACAATACTTAGAC+AGG + chr7_1:66448926-66448945 None:intergenic 35.0%
CAGTTCACATATTCTTCAGA+TGG + chr7_1:66449143-66449162 None:intergenic 35.0%
GCAGATTACATCAAGACAAA+AGG + chr7_1:66449334-66449353 None:intergenic 35.0%
CTAATGCATGTTGAACAACA+AGG + chr7_1:66449409-66449428 None:intergenic 35.0%
!! TGTCTAATTTTGAGTGTGAG+AGG - chr7_1:66449442-66449461 Msa1031740:CDS 35.0%
!! GTCTAATTTTGAGTGTGAGA+GGG - chr7_1:66449443-66449462 Msa1031740:CDS 35.0%
AGCATATTGAGGATATAGCT+AGG + chr7_1:66449536-66449555 None:intergenic 35.0%
GGTTACATTCTAGCATATTG+AGG + chr7_1:66449547-66449566 None:intergenic 35.0%
!!! CTATGCGTGGAATTTTTTGT+TGG - chr7_1:66449648-66449667 Msa1031740:CDS 35.0%
TTTGGATGATCGATCACATA+TGG - chr7_1:66449946-66449965 Msa1031740:CDS 35.0%
! TACAATTGAAGATTAGCTGC+TGG - chr7_1:66449970-66449989 Msa1031740:CDS 35.0%
TATCAACTTATCACCATGGT+AGG - chr7_1:66450060-66450079 Msa1031740:exon 35.0%
ATCAACTTATCACCATGGTA+GGG - chr7_1:66450061-66450080 Msa1031740:exon 35.0%
CATCACTAAAACCCTAAACC+CGG - chr7_1:66448154-66448173 Msa1031740:three_prime_UTR 40.0%
CTGCAAAACATGACTCAGAT+TGG - chr7_1:66448632-66448651 Msa1031740:intron 40.0%
! GTTGCTACTTCATATGCATC+TGG - chr7_1:66448811-66448830 Msa1031740:intron 40.0%
TGAGGAAGAAATCTTGCTAG+AGG + chr7_1:66448871-66448890 None:intergenic 40.0%
AAGGCAGTGAGAACATACTT+CGG + chr7_1:66448895-66448914 None:intergenic 40.0%
AAGGAAATGTGGGACATTAC+AGG + chr7_1:66449568-66449587 None:intergenic 40.0%
CATCACTAAAACCCTAAACC+CGG - chr7_1:66448154-66448173 Msa1031740:three_prime_UTR 40.0%
CTGCAAAACATGACTCAGAT+TGG - chr7_1:66448632-66448651 Msa1031740:intron 40.0%
! GTTGCTACTTCATATGCATC+TGG - chr7_1:66448811-66448830 Msa1031740:intron 40.0%
TGAGGAAGAAATCTTGCTAG+AGG + chr7_1:66448871-66448890 None:intergenic 40.0%
AAGGCAGTGAGAACATACTT+CGG + chr7_1:66448895-66448914 None:intergenic 40.0%
AAGGAAATGTGGGACATTAC+AGG + chr7_1:66449568-66449587 None:intergenic 40.0%
TGTGAGCTGAGCTTCAACAA+TGG + chr7_1:66448204-66448223 None:intergenic 45.0%
TACCCACGAACCTACAACTT+CGG + chr7_1:66448418-66448437 None:intergenic 45.0%
ACGTTTATCCATGCCTGTGA+AGG - chr7_1:66448551-66448570 Msa1031740:CDS 45.0%
TGTAACAGCATCTCCTTCAC+AGG + chr7_1:66448567-66448586 None:intergenic 45.0%
!! TTTGAGTGTGAGAGGGTGTT+AGG - chr7_1:66449450-66449469 Msa1031740:CDS 45.0%
!! TTGAGTGTGAGAGGGTGTTA+GGG - chr7_1:66449451-66449470 Msa1031740:CDS 45.0%
TATGCAGTTGGATCTATGCG+TGG - chr7_1:66449635-66449654 Msa1031740:CDS 45.0%
ATCACCATGGTAGGGATGAT+AGG - chr7_1:66450069-66450088 Msa1031740:five_prime_UTR 45.0%
TCACCATGGTAGGGATGATA+GGG - chr7_1:66450070-66450089 Msa1031740:five_prime_UTR 45.0%
TGTGAGCTGAGCTTCAACAA+TGG + chr7_1:66448204-66448223 None:intergenic 45.0%
TACCCACGAACCTACAACTT+CGG + chr7_1:66448418-66448437 None:intergenic 45.0%
ACGTTTATCCATGCCTGTGA+AGG - chr7_1:66448551-66448570 Msa1031740:CDS 45.0%
TGTAACAGCATCTCCTTCAC+AGG + chr7_1:66448567-66448586 None:intergenic 45.0%
!! TTTGAGTGTGAGAGGGTGTT+AGG - chr7_1:66449450-66449469 Msa1031740:CDS 45.0%
!! TTGAGTGTGAGAGGGTGTTA+GGG - chr7_1:66449451-66449470 Msa1031740:CDS 45.0%
TATGCAGTTGGATCTATGCG+TGG - chr7_1:66449635-66449654 Msa1031740:CDS 45.0%
ATCACCATGGTAGGGATGAT+AGG - chr7_1:66450069-66450088 Msa1031740:five_prime_UTR 45.0%
TCACCATGGTAGGGATGATA+GGG - chr7_1:66450070-66450089 Msa1031740:five_prime_UTR 45.0%
AGCTGAGCTTCAACAATGGC+GGG + chr7_1:66448200-66448219 None:intergenic 50.0%
GAGCTGAGCTTCAACAATGG+CGG + chr7_1:66448201-66448220 None:intergenic 50.0%
TGCAGGGGGTCTCATTGTTT+GGG + chr7_1:66448244-66448263 None:intergenic 50.0%
TTGCAGGGGGTCTCATTGTT+TGG + chr7_1:66448245-66448264 None:intergenic 50.0%
CACCTCTGAATCCACCATCT+CGG + chr7_1:66448302-66448321 None:intergenic 50.0%
! GGAGGTGGATTTCGTGATGA+AGG - chr7_1:66448384-66448403 Msa1031740:three_prime_UTR 50.0%
CACGAACCTACAACTTCGGA+GGG + chr7_1:66448414-66448433 None:intergenic 50.0%
CTCCGAAGTTGTAGGTTCGT+GGG - chr7_1:66448413-66448432 Msa1031740:exon 50.0%
CTAGAGGCAAGAGCTTCCTA+GGG + chr7_1:66448855-66448874 None:intergenic 50.0%
GTGAGAACATACTTCGGCTG+AGG + chr7_1:66448889-66448908 None:intergenic 50.0%
!! TGAGTGTGAGAGGGTGTTAG+GGG - chr7_1:66449452-66449471 Msa1031740:CDS 50.0%
TATTGCAGGGGACAAGCATC+AGG - chr7_1:66449722-66449741 Msa1031740:CDS 50.0%
TACTGAAACCACCACCTCCA+CGG + chr7_1:66449763-66449782 None:intergenic 50.0%
!! AGGTGGTGGTTTTCGTGGAA+GGG - chr7_1:66449799-66449818 Msa1031740:intron 50.0%
CTACCCTATCATCCCTACCA+TGG + chr7_1:66450076-66450095 None:intergenic 50.0%
AGCTGAGCTTCAACAATGGC+GGG + chr7_1:66448200-66448219 None:intergenic 50.0%
GAGCTGAGCTTCAACAATGG+CGG + chr7_1:66448201-66448220 None:intergenic 50.0%
TGCAGGGGGTCTCATTGTTT+GGG + chr7_1:66448244-66448263 None:intergenic 50.0%
TTGCAGGGGGTCTCATTGTT+TGG + chr7_1:66448245-66448264 None:intergenic 50.0%
CACCTCTGAATCCACCATCT+CGG + chr7_1:66448302-66448321 None:intergenic 50.0%
! GGAGGTGGATTTCGTGATGA+AGG - chr7_1:66448384-66448403 Msa1031740:three_prime_UTR 50.0%
CACGAACCTACAACTTCGGA+GGG + chr7_1:66448414-66448433 None:intergenic 50.0%
CTCCGAAGTTGTAGGTTCGT+GGG - chr7_1:66448413-66448432 Msa1031740:exon 50.0%
CTAGAGGCAAGAGCTTCCTA+GGG + chr7_1:66448855-66448874 None:intergenic 50.0%
GTGAGAACATACTTCGGCTG+AGG + chr7_1:66448889-66448908 None:intergenic 50.0%
!! TGAGTGTGAGAGGGTGTTAG+GGG - chr7_1:66449452-66449471 Msa1031740:CDS 50.0%
TATTGCAGGGGACAAGCATC+AGG - chr7_1:66449722-66449741 Msa1031740:CDS 50.0%
TACTGAAACCACCACCTCCA+CGG + chr7_1:66449763-66449782 None:intergenic 50.0%
!! AGGTGGTGGTTTTCGTGGAA+GGG - chr7_1:66449799-66449818 Msa1031740:intron 50.0%
CTACCCTATCATCCCTACCA+TGG + chr7_1:66450076-66450095 None:intergenic 50.0%
GCTGAGCTTCAACAATGGCG+GGG + chr7_1:66448199-66448218 None:intergenic 55.0%
ACAATGAGACCCCCTGCAAG+AGG - chr7_1:66448246-66448265 Msa1031740:three_prime_UTR 55.0%
CACCTCTGAATCCACCACCA+CGG + chr7_1:66448278-66448297 None:intergenic 55.0%
!! CGAGATGGTGGATTCAGAGG+TGG - chr7_1:66448300-66448319 Msa1031740:three_prime_UTR 55.0%
GGATTCAGAGGTGGTCGTGA+TGG - chr7_1:66448309-66448328 Msa1031740:three_prime_UTR 55.0%
TTCAGAGGTGGTCGTGATGG+AGG - chr7_1:66448312-66448331 Msa1031740:three_prime_UTR 55.0%
!! CGTGATGGAGGAGGTTTTCG+TGG - chr7_1:66448324-66448343 Msa1031740:three_prime_UTR 55.0%
GAACCTACAACTTCGGAGGG+AGG + chr7_1:66448411-66448430 None:intergenic 55.0%
CCACGAACCTACAACTTCGG+AGG + chr7_1:66448415-66448434 None:intergenic 55.0%
CCTCCGAAGTTGTAGGTTCG+TGG - chr7_1:66448412-66448431 Msa1031740:exon 55.0%
CAGCATCTCCTTCACAGGCA+TGG + chr7_1:66448562-66448581 None:intergenic 55.0%
GCTAGAGGCAAGAGCTTCCT+AGG + chr7_1:66448856-66448875 None:intergenic 55.0%
!! GAGTGTGAGAGGGTGTTAGG+GGG - chr7_1:66449453-66449472 Msa1031740:CDS 55.0%
GGACAAGCATCAGGTGGTAG+AGG - chr7_1:66449731-66449750 Msa1031740:CDS 55.0%
CAAGCATCAGGTGGTAGAGG+TGG - chr7_1:66449734-66449753 Msa1031740:CDS 55.0%
! GGAGGTGGTGGTTTCAGTAG+AGG - chr7_1:66449764-66449783 Msa1031740:intron 55.0%
! GGTGGTGGTTTCAGTAGAGG+TGG - chr7_1:66449767-66449786 Msa1031740:intron 55.0%
GGTGGTTTCAGTAGAGGTGG+TGG - chr7_1:66449770-66449789 Msa1031740:intron 55.0%
CACGAAAACCACCACCTCCA+CGG + chr7_1:66449796-66449815 None:intergenic 55.0%
!! GAGGTGGTGGTTTTCGTGGA+AGG - chr7_1:66449798-66449817 Msa1031740:intron 55.0%
!! GGTGGTGGTTTTCGTGGAAG+GGG - chr7_1:66449800-66449819 Msa1031740:intron 55.0%
!! TGGACGTGGTGGTGGTTTCA+GGG - chr7_1:66449856-66449875 Msa1031740:intron 55.0%
!! TGGTGGTGGTTTCAGGGGAA+GGG - chr7_1:66449862-66449881 Msa1031740:intron 55.0%
AGGGGAAGGGGCAGATTCTA+GGG - chr7_1:66449875-66449894 Msa1031740:intron 55.0%
GCTGAGCTTCAACAATGGCG+GGG + chr7_1:66448199-66448218 None:intergenic 55.0%
ACAATGAGACCCCCTGCAAG+AGG - chr7_1:66448246-66448265 Msa1031740:three_prime_UTR 55.0%
CACCTCTGAATCCACCACCA+CGG + chr7_1:66448278-66448297 None:intergenic 55.0%
!! CGAGATGGTGGATTCAGAGG+TGG - chr7_1:66448300-66448319 Msa1031740:three_prime_UTR 55.0%
GGATTCAGAGGTGGTCGTGA+TGG - chr7_1:66448309-66448328 Msa1031740:three_prime_UTR 55.0%
TTCAGAGGTGGTCGTGATGG+AGG - chr7_1:66448312-66448331 Msa1031740:three_prime_UTR 55.0%
!! CGTGATGGAGGAGGTTTTCG+TGG - chr7_1:66448324-66448343 Msa1031740:three_prime_UTR 55.0%
GAACCTACAACTTCGGAGGG+AGG + chr7_1:66448411-66448430 None:intergenic 55.0%
CCACGAACCTACAACTTCGG+AGG + chr7_1:66448415-66448434 None:intergenic 55.0%
CCTCCGAAGTTGTAGGTTCG+TGG - chr7_1:66448412-66448431 Msa1031740:exon 55.0%
CAGCATCTCCTTCACAGGCA+TGG + chr7_1:66448562-66448581 None:intergenic 55.0%
GCTAGAGGCAAGAGCTTCCT+AGG + chr7_1:66448856-66448875 None:intergenic 55.0%
!! GAGTGTGAGAGGGTGTTAGG+GGG - chr7_1:66449453-66449472 Msa1031740:CDS 55.0%
GGACAAGCATCAGGTGGTAG+AGG - chr7_1:66449731-66449750 Msa1031740:CDS 55.0%
CAAGCATCAGGTGGTAGAGG+TGG - chr7_1:66449734-66449753 Msa1031740:CDS 55.0%
! GGAGGTGGTGGTTTCAGTAG+AGG - chr7_1:66449764-66449783 Msa1031740:intron 55.0%
! GGTGGTGGTTTCAGTAGAGG+TGG - chr7_1:66449767-66449786 Msa1031740:intron 55.0%
GGTGGTTTCAGTAGAGGTGG+TGG - chr7_1:66449770-66449789 Msa1031740:intron 55.0%
CACGAAAACCACCACCTCCA+CGG + chr7_1:66449796-66449815 None:intergenic 55.0%
!! GAGGTGGTGGTTTTCGTGGA+AGG - chr7_1:66449798-66449817 Msa1031740:intron 55.0%
!! GGTGGTGGTTTTCGTGGAAG+GGG - chr7_1:66449800-66449819 Msa1031740:intron 55.0%
!! TGGACGTGGTGGTGGTTTCA+GGG - chr7_1:66449856-66449875 Msa1031740:intron 55.0%
!! TGGTGGTGGTTTCAGGGGAA+GGG - chr7_1:66449862-66449881 Msa1031740:intron 55.0%
AGGGGAAGGGGCAGATTCTA+GGG - chr7_1:66449875-66449894 Msa1031740:intron 55.0%
ATGAGACCCCCTGCAAGAGG+TGG - chr7_1:66448249-66448268 Msa1031740:three_prime_UTR 60.0%
!! CGTGGTGGTGGATTCAGAGG+TGG - chr7_1:66448276-66448295 Msa1031740:three_prime_UTR 60.0%
GGATTCAGAGGTGGCCGAGA+TGG - chr7_1:66448285-66448304 Msa1031740:three_prime_UTR 60.0%
TTCAGAGGTGGCCGAGATGG+TGG - chr7_1:66448288-66448307 Msa1031740:three_prime_UTR 60.0%
!! GGCCGAGATGGTGGATTCAG+AGG - chr7_1:66448297-66448316 Msa1031740:three_prime_UTR 60.0%
! AGAGGTGGTCGTGATGGAGG+AGG - chr7_1:66448315-66448334 Msa1031740:three_prime_UTR 60.0%
! GGAGGAGGTTTTCGTGGACG+TGG - chr7_1:66448330-66448349 Msa1031740:three_prime_UTR 60.0%
! GGAGGTTTTCGTGGACGTGG+TGG - chr7_1:66448333-66448352 Msa1031740:three_prime_UTR 60.0%
! GGTTTTCGTGGACGTGGTGG+TGG - chr7_1:66448336-66448355 Msa1031740:three_prime_UTR 60.0%
!! GGACGTGGTGGTGGTCGATT+CGG - chr7_1:66448345-66448364 Msa1031740:three_prime_UTR 60.0%
GGACCTCCCTCCGAAGTTGT+AGG - chr7_1:66448405-66448424 Msa1031740:exon 60.0%
!! TGTGAGAGGGTGTTAGGGGG+TGG - chr7_1:66449456-66449475 Msa1031740:CDS 60.0%
!! GTGAGAGGGTGTTAGGGGGT+GGG - chr7_1:66449457-66449476 Msa1031740:CDS 60.0%
TGCAGGGGACAAGCATCAGG+TGG - chr7_1:66449725-66449744 Msa1031740:CDS 60.0%
GCATCAGGTGGTAGAGGTGG+AGG - chr7_1:66449737-66449756 Msa1031740:CDS 60.0%
! TTCAGTAGAGGTGGTGGCCG+TGG - chr7_1:66449776-66449795 Msa1031740:intron 60.0%
!! CGTGGAGGTGGTGGTTTTCG+TGG - chr7_1:66449794-66449813 Msa1031740:intron 60.0%
TTCGTGGAAGGGGTCCTCCA+AGG - chr7_1:66449810-66449829 Msa1031740:intron 60.0%
TCGTGGAAGGGGTCCTCCAA+GGG - chr7_1:66449811-66449830 Msa1031740:intron 60.0%
GGTGGAAGAGGTCCTCCTAG+AGG - chr7_1:66449833-66449852 Msa1031740:intron 60.0%
GGAAGAGGTCCTCCTAGAGG+TGG - chr7_1:66449836-66449855 Msa1031740:intron 60.0%
!! GTGGACGTGGTGGTGGTTTC+AGG - chr7_1:66449855-66449874 Msa1031740:intron 60.0%
!! GGACGTGGTGGTGGTTTCAG+GGG - chr7_1:66449857-66449876 Msa1031740:intron 60.0%
!! GTGGTGGTGGTTTCAGGGGA+AGG - chr7_1:66449861-66449880 Msa1031740:intron 60.0%
! GGTGGTGGTTTCAGGGGAAG+GGG - chr7_1:66449863-66449882 Msa1031740:intron 60.0%
CAGGGGAAGGGGCAGATTCT+AGG - chr7_1:66449874-66449893 Msa1031740:intron 60.0%
ATGAGACCCCCTGCAAGAGG+TGG - chr7_1:66448249-66448268 Msa1031740:three_prime_UTR 60.0%
!! CGTGGTGGTGGATTCAGAGG+TGG - chr7_1:66448276-66448295 Msa1031740:three_prime_UTR 60.0%
GGATTCAGAGGTGGCCGAGA+TGG - chr7_1:66448285-66448304 Msa1031740:three_prime_UTR 60.0%
TTCAGAGGTGGCCGAGATGG+TGG - chr7_1:66448288-66448307 Msa1031740:three_prime_UTR 60.0%
!! GGCCGAGATGGTGGATTCAG+AGG - chr7_1:66448297-66448316 Msa1031740:three_prime_UTR 60.0%
! AGAGGTGGTCGTGATGGAGG+AGG - chr7_1:66448315-66448334 Msa1031740:three_prime_UTR 60.0%
! GGAGGAGGTTTTCGTGGACG+TGG - chr7_1:66448330-66448349 Msa1031740:three_prime_UTR 60.0%
! GGAGGTTTTCGTGGACGTGG+TGG - chr7_1:66448333-66448352 Msa1031740:three_prime_UTR 60.0%
! GGTTTTCGTGGACGTGGTGG+TGG - chr7_1:66448336-66448355 Msa1031740:three_prime_UTR 60.0%
!! GGACGTGGTGGTGGTCGATT+CGG - chr7_1:66448345-66448364 Msa1031740:three_prime_UTR 60.0%
GGACCTCCCTCCGAAGTTGT+AGG - chr7_1:66448405-66448424 Msa1031740:exon 60.0%
!! TGTGAGAGGGTGTTAGGGGG+TGG - chr7_1:66449456-66449475 Msa1031740:CDS 60.0%
!! GTGAGAGGGTGTTAGGGGGT+GGG - chr7_1:66449457-66449476 Msa1031740:CDS 60.0%
TGCAGGGGACAAGCATCAGG+TGG - chr7_1:66449725-66449744 Msa1031740:CDS 60.0%
GCATCAGGTGGTAGAGGTGG+AGG - chr7_1:66449737-66449756 Msa1031740:CDS 60.0%
! TTCAGTAGAGGTGGTGGCCG+TGG - chr7_1:66449776-66449795 Msa1031740:intron 60.0%
!! CGTGGAGGTGGTGGTTTTCG+TGG - chr7_1:66449794-66449813 Msa1031740:intron 60.0%
TTCGTGGAAGGGGTCCTCCA+AGG - chr7_1:66449810-66449829 Msa1031740:intron 60.0%
TCGTGGAAGGGGTCCTCCAA+GGG - chr7_1:66449811-66449830 Msa1031740:intron 60.0%
GGTGGAAGAGGTCCTCCTAG+AGG - chr7_1:66449833-66449852 Msa1031740:intron 60.0%
GGAAGAGGTCCTCCTAGAGG+TGG - chr7_1:66449836-66449855 Msa1031740:intron 60.0%
!! GTGGACGTGGTGGTGGTTTC+AGG - chr7_1:66449855-66449874 Msa1031740:intron 60.0%
!! GGACGTGGTGGTGGTTTCAG+GGG - chr7_1:66449857-66449876 Msa1031740:intron 60.0%
!! GTGGTGGTGGTTTCAGGGGA+AGG - chr7_1:66449861-66449880 Msa1031740:intron 60.0%
! GGTGGTGGTTTCAGGGGAAG+GGG - chr7_1:66449863-66449882 Msa1031740:intron 60.0%
CAGGGGAAGGGGCAGATTCT+AGG - chr7_1:66449874-66449893 Msa1031740:intron 60.0%
AGACCCCCTGCAAGAGGTGG+CGG - chr7_1:66448252-66448271 Msa1031740:three_prime_UTR 65.0%
!! GGCCGTGGTGGTGGATTCAG+AGG - chr7_1:66448273-66448292 Msa1031740:three_prime_UTR 65.0%
!! CGTGGTGGTGGTCGATTCGG+CGG - chr7_1:66448348-66448367 Msa1031740:three_prime_UTR 65.0%
!! AGAGGGTGTTAGGGGGTGGG+TGG - chr7_1:66449460-66449479 Msa1031740:CDS 65.0%
!! GAGGGTGTTAGGGGGTGGGT+GGG - chr7_1:66449461-66449480 Msa1031740:CDS 65.0%
! AGTAGAGGTGGTGGCCGTGG+AGG - chr7_1:66449779-66449798 Msa1031740:intron 65.0%
CGTGGAAGGGGTCCTCCAAG+GGG - chr7_1:66449812-66449831 Msa1031740:intron 65.0%
GGTCCTCCAAGGGGTGGAAG+AGG - chr7_1:66449821-66449840 Msa1031740:intron 65.0%
GGACCTCTTCCACCCCTTGG+AGG + chr7_1:66449827-66449846 None:intergenic 65.0%
GGAGGACCTCTTCCACCCCT+TGG + chr7_1:66449830-66449849 None:intergenic 65.0%
GGTCCTCCTAGAGGTGGACG+TGG - chr7_1:66449842-66449861 Msa1031740:intron 65.0%
CCACCACGTCCACCTCTAGG+AGG + chr7_1:66449848-66449867 None:intergenic 65.0%
CCTCCTAGAGGTGGACGTGG+TGG - chr7_1:66449845-66449864 Msa1031740:intron 65.0%
CCACCACCACGTCCACCTCT+AGG + chr7_1:66449851-66449870 None:intergenic 65.0%
CCTAGAGGTGGACGTGGTGG+TGG - chr7_1:66449848-66449867 Msa1031740:intron 65.0%
AGACCCCCTGCAAGAGGTGG+CGG - chr7_1:66448252-66448271 Msa1031740:three_prime_UTR 65.0%
!! GGCCGTGGTGGTGGATTCAG+AGG - chr7_1:66448273-66448292 Msa1031740:three_prime_UTR 65.0%
!! CGTGGTGGTGGTCGATTCGG+CGG - chr7_1:66448348-66448367 Msa1031740:three_prime_UTR 65.0%
!! AGAGGGTGTTAGGGGGTGGG+TGG - chr7_1:66449460-66449479 Msa1031740:CDS 65.0%
!! GAGGGTGTTAGGGGGTGGGT+GGG - chr7_1:66449461-66449480 Msa1031740:CDS 65.0%
! AGTAGAGGTGGTGGCCGTGG+AGG - chr7_1:66449779-66449798 Msa1031740:intron 65.0%
CGTGGAAGGGGTCCTCCAAG+GGG - chr7_1:66449812-66449831 Msa1031740:intron 65.0%
GGTCCTCCAAGGGGTGGAAG+AGG - chr7_1:66449821-66449840 Msa1031740:intron 65.0%
GGACCTCTTCCACCCCTTGG+AGG + chr7_1:66449827-66449846 None:intergenic 65.0%
GGAGGACCTCTTCCACCCCT+TGG + chr7_1:66449830-66449849 None:intergenic 65.0%
GGTCCTCCTAGAGGTGGACG+TGG - chr7_1:66449842-66449861 Msa1031740:intron 65.0%
CCACCACGTCCACCTCTAGG+AGG + chr7_1:66449848-66449867 None:intergenic 65.0%
CCTCCTAGAGGTGGACGTGG+TGG - chr7_1:66449845-66449864 Msa1031740:intron 65.0%
CCACCACCACGTCCACCTCT+AGG + chr7_1:66449851-66449870 None:intergenic 65.0%
CCTAGAGGTGGACGTGGTGG+TGG - chr7_1:66449848-66449867 Msa1031740:intron 65.0%
ACGGCCGCCACCTCTTGCAG+GGG + chr7_1:66448259-66448278 None:intergenic 70.0%
CACGGCCGCCACCTCTTGCA+GGG + chr7_1:66448260-66448279 None:intergenic 70.0%
!! GGTGGTGGTCGATTCGGCGG+TGG - chr7_1:66448351-66448370 Msa1031740:three_prime_UTR 70.0%
!! GGTCGATTCGGCGGTGGACG+TGG - chr7_1:66448357-66448376 Msa1031740:three_prime_UTR 70.0%
! CGATTCGGCGGTGGACGTGG+TGG - chr7_1:66448360-66448379 Msa1031740:three_prime_UTR 70.0%
TTCGGCGGTGGACGTGGTGG+TGG - chr7_1:66448363-66448382 Msa1031740:three_prime_UTR 70.0%
!! GGTGGACGTGGTGGTGGAGG+TGG - chr7_1:66448369-66448388 Msa1031740:three_prime_UTR 70.0%
GTGTTAGGGGGTGGGTGGGC+AGG - chr7_1:66449465-66449484 Msa1031740:CDS 70.0%
GGTGGTAGAGGTGGAGGCCG+TGG - chr7_1:66449743-66449762 Msa1031740:CDS 70.0%
GGTAGAGGTGGAGGCCGTGG+AGG - chr7_1:66449746-66449765 Msa1031740:CDS 70.0%
AGAGGTGGAGGCCGTGGAGG+TGG - chr7_1:66449749-66449768 Msa1031740:CDS 70.0%
! AGAGGTGGTGGCCGTGGAGG+TGG - chr7_1:66449782-66449801 Msa1031740:intron 70.0%
GGAAGGGGTCCTCCAAGGGG+TGG - chr7_1:66449815-66449834 Msa1031740:intron 70.0%
ACGGCCGCCACCTCTTGCAG+GGG + chr7_1:66448259-66448278 None:intergenic 70.0%
CACGGCCGCCACCTCTTGCA+GGG + chr7_1:66448260-66448279 None:intergenic 70.0%
!! GGTGGTGGTCGATTCGGCGG+TGG - chr7_1:66448351-66448370 Msa1031740:three_prime_UTR 70.0%
!! GGTCGATTCGGCGGTGGACG+TGG - chr7_1:66448357-66448376 Msa1031740:three_prime_UTR 70.0%
! CGATTCGGCGGTGGACGTGG+TGG - chr7_1:66448360-66448379 Msa1031740:three_prime_UTR 70.0%
TTCGGCGGTGGACGTGGTGG+TGG - chr7_1:66448363-66448382 Msa1031740:three_prime_UTR 70.0%
!! GGTGGACGTGGTGGTGGAGG+TGG - chr7_1:66448369-66448388 Msa1031740:three_prime_UTR 70.0%
GTGTTAGGGGGTGGGTGGGC+AGG - chr7_1:66449465-66449484 Msa1031740:CDS 70.0%
GGTGGTAGAGGTGGAGGCCG+TGG - chr7_1:66449743-66449762 Msa1031740:CDS 70.0%
GGTAGAGGTGGAGGCCGTGG+AGG - chr7_1:66449746-66449765 Msa1031740:CDS 70.0%
AGAGGTGGAGGCCGTGGAGG+TGG - chr7_1:66449749-66449768 Msa1031740:CDS 70.0%
! AGAGGTGGTGGCCGTGGAGG+TGG - chr7_1:66449782-66449801 Msa1031740:intron 70.0%
GGAAGGGGTCCTCCAAGGGG+TGG - chr7_1:66449815-66449834 Msa1031740:intron 70.0%
CGGCCGCCACCTCTTGCAGG+GGG + chr7_1:66448258-66448277 None:intergenic 75.0%
CCACGGCCGCCACCTCTTGC+AGG + chr7_1:66448261-66448280 None:intergenic 75.0%
! CCTGCAAGAGGTGGCGGCCG+TGG - chr7_1:66448258-66448277 Msa1031740:three_prime_UTR 75.0%
! GCAAGAGGTGGCGGCCGTGG+TGG - chr7_1:66448261-66448280 Msa1031740:three_prime_UTR 75.0%
! AGAGGTGGCGGCCGTGGTGG+TGG - chr7_1:66448264-66448283 Msa1031740:three_prime_UTR 75.0%
!! GGCGGTGGACGTGGTGGTGG+AGG - chr7_1:66448366-66448385 Msa1031740:three_prime_UTR 75.0%
GGTGGAGGCCGTGGAGGTGG+TGG - chr7_1:66449752-66449771 Msa1031740:intron 75.0%
! GGTGGTGGCCGTGGAGGTGG+TGG - chr7_1:66449785-66449804 Msa1031740:intron 75.0%
CGGCCGCCACCTCTTGCAGG+GGG + chr7_1:66448258-66448277 None:intergenic 75.0%
CCACGGCCGCCACCTCTTGC+AGG + chr7_1:66448261-66448280 None:intergenic 75.0%
! CCTGCAAGAGGTGGCGGCCG+TGG - chr7_1:66448258-66448277 Msa1031740:three_prime_UTR 75.0%
! GCAAGAGGTGGCGGCCGTGG+TGG - chr7_1:66448261-66448280 Msa1031740:three_prime_UTR 75.0%
! AGAGGTGGCGGCCGTGGTGG+TGG - chr7_1:66448264-66448283 Msa1031740:three_prime_UTR 75.0%
!! GGCGGTGGACGTGGTGGTGG+AGG - chr7_1:66448366-66448385 Msa1031740:three_prime_UTR 75.0%
GGTGGAGGCCGTGGAGGTGG+TGG - chr7_1:66449752-66449771 Msa1031740:intron 75.0%
! GGTGGTGGCCGTGGAGGTGG+TGG - chr7_1:66449785-66449804 Msa1031740:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 66448152 66450159 66448152 ID=Msa1031740;Name=Msa1031740
chr7_1 mRNA 66448152 66450159 66448152 ID=Msa1031740-mRNA-1;Parent=Msa1031740;Name=Msa1031740-mRNA-1;_AED=0.05;_eAED=0.05;_QI=97|1|1|1|1|1|4|264|202
chr7_1 exon 66448152 66448581 66448152 ID=Msa1031740-mRNA-1:exon:14978;Parent=Msa1031740-mRNA-1
chr7_1 exon 66449415 66449530 66449415 ID=Msa1031740-mRNA-1:exon:14977;Parent=Msa1031740-mRNA-1
chr7_1 exon 66449620 66449768 66449620 ID=Msa1031740-mRNA-1:exon:14976;Parent=Msa1031740-mRNA-1
chr7_1 exon 66449885 66450159 66449885 ID=Msa1031740-mRNA-1:exon:14975;Parent=Msa1031740-mRNA-1
chr7_1 five_prime_UTR 66450063 66450159 66450063 ID=Msa1031740-mRNA-1:five_prime_utr;Parent=Msa1031740-mRNA-1
chr7_1 CDS 66449885 66450062 66449885 ID=Msa1031740-mRNA-1:cds;Parent=Msa1031740-mRNA-1
chr7_1 CDS 66449620 66449768 66449620 ID=Msa1031740-mRNA-1:cds;Parent=Msa1031740-mRNA-1
chr7_1 CDS 66449415 66449530 66449415 ID=Msa1031740-mRNA-1:cds;Parent=Msa1031740-mRNA-1
chr7_1 CDS 66448416 66448581 66448416 ID=Msa1031740-mRNA-1:cds;Parent=Msa1031740-mRNA-1
chr7_1 three_prime_UTR 66448152 66448415 66448152 ID=Msa1031740-mRNA-1:three_prime_utr;Parent=Msa1031740-mRNA-1
Gene Sequence

>Msa1031740

ATGAGACCCCCTGCAAGAGGTGGCGGCCGTGGTGGTGGATTCAGAGGTGGCCGAGATGGTGGATTCAGAGGTGGTCGTGATGGAGGAGGTTTTCGTGGACGTGGTGGTGGTCGATTCGGCGGTGGACGTGGTGGTGGAGGTGGATTTCGTGATGAAGGACCTCCCTCCGAAGTTGTAGAGGTTTCAACGTTTATCCATGCCTGTGAAGGAGATGCTGTTACAAAGCTGACCAATGAGAAAATTCCATTTTTTAATGCTCCTATTTATCTGCAAAACATGACTCAGATTGGGAAAGTCGATGAAATATTTGGTCCCATCAATGAATCTTACTTTTCTATTAAAATGATGGAAGGGATTGTTGCTACTTCATATGCATCTGGTGACAAGTTTTACATTGACCCTAGGAAGCTCTTGCCTCTAGCAAGATTTCTTCCTCAGCCGAAGGGACAAGCATCAGGTGGTAGAGGTGGAGGCCGTGGAGGTGGTGGTTTCAGTAGAGGTGGTGGCCGTGGAGGTGGTGGTTTTCGTGGAAGGGGTCCTCCAAGGGGTGGAAGAGGTCCTCCTAGAGGTGGACGTGGTGGTGGTTTCAGGGGAAGGGGCAGATTCTAG
Protein sequence

>Msa1031740

MRPPARGGGRGGGFRGGRDGGFRGGRDGGGFRGRGGGRFGGGRGGGGGFRDEGPPSEVVEVSTFIHACEGDAVTKLTNEKIPFFNAPIYLQNMTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPRKLLPLARFLPQPKGQASGGRGGGRGGGGFSRGGGRGGGGFRGRGPPRGGRGPPRGGRGGGFRGRGRF*