Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062530 | RHN46337.1 | 65.647 | 425 | 122 | 6 | 2 | 411 | 13 | 428 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062530 | A0A396H5V7 | 65.647 | 425 | 122 | 6 | 2 | 411 | 13 | 428 | 0.0 | 544 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1062530 | Msa1147900 | 0.802798 | 4.727406e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062530 | MtrunA17_Chr7g0241161 | 65.647 | 425 | 122 | 6 | 2 | 411 | 13 | 428 | 0.0 | 544 |
| Msa1062530 | MtrunA17_Chr7g0241421 | 51.775 | 479 | 149 | 10 | 3 | 410 | 13 | 480 | 1.49e-141 | 417 |
| Msa1062530 | MtrunA17_Chr7g0241261 | 52.500 | 440 | 154 | 8 | 2 | 402 | 7 | 430 | 3.40e-138 | 403 |
| Msa1062530 | MtrunA17_Chr7g0241251 | 52.083 | 432 | 150 | 6 | 2 | 387 | 10 | 430 | 2.50e-137 | 402 |
| Msa1062530 | MtrunA17_Chr7g0218371 | 51.747 | 458 | 157 | 12 | 2 | 416 | 12 | 448 | 2.01e-131 | 386 |
| Msa1062530 | MtrunA17_Chr7g0241431 | 50.866 | 462 | 160 | 11 | 10 | 413 | 1 | 453 | 4.84e-130 | 383 |
| Msa1062530 | MtrunA17_Chr1g0166321 | 49.667 | 451 | 158 | 8 | 2 | 394 | 12 | 451 | 2.80e-128 | 380 |
| Msa1062530 | MtrunA17_Chr7g0237451 | 47.510 | 482 | 157 | 12 | 3 | 410 | 11 | 470 | 8.67e-125 | 370 |
| Msa1062530 | MtrunA17_Chr7g0241201 | 55.409 | 379 | 110 | 6 | 2 | 331 | 13 | 381 | 6.72e-123 | 362 |
| Msa1062530 | MtrunA17_Chr7g0241331 | 39.474 | 494 | 206 | 11 | 1 | 410 | 1 | 485 | 9.62e-102 | 312 |
| Msa1062530 | MtrunA17_Chr7g0241271 | 56.000 | 325 | 89 | 7 | 5 | 283 | 15 | 331 | 4.45e-95 | 289 |
| Msa1062530 | MtrunA17_Chr7g0239921 | 39.413 | 477 | 206 | 10 | 3 | 412 | 36 | 496 | 1.69e-89 | 281 |
| Msa1062530 | MtrunA17_Chr7g0239731 | 36.515 | 482 | 218 | 8 | 3 | 412 | 8 | 473 | 6.68e-88 | 276 |
| Msa1062530 | MtrunA17_Chr7g0238971 | 38.831 | 479 | 202 | 12 | 3 | 408 | 11 | 471 | 4.68e-87 | 273 |
| Msa1062530 | MtrunA17_Chr7g0238961 | 38.370 | 503 | 201 | 11 | 3 | 412 | 264 | 750 | 5.61e-86 | 278 |
| Msa1062530 | MtrunA17_Chr7g0238961 | 45.522 | 134 | 65 | 3 | 5 | 130 | 11 | 144 | 4.87e-28 | 117 |
| Msa1062530 | MtrunA17_Chr7g0239891 | 38.645 | 502 | 207 | 14 | 3 | 412 | 10 | 502 | 6.60e-83 | 264 |
| Msa1062530 | MtrunA17_Chr3g0078631 | 39.309 | 463 | 202 | 11 | 1 | 410 | 19 | 455 | 3.32e-79 | 253 |
| Msa1062530 | MtrunA17_Chr7g0241291 | 45.455 | 330 | 125 | 4 | 138 | 419 | 3 | 325 | 4.82e-79 | 248 |
| Msa1062530 | MtrunA17_Chr7g0239831 | 38.017 | 484 | 206 | 12 | 5 | 410 | 11 | 478 | 8.79e-79 | 252 |
| Msa1062530 | MtrunA17_Chr7g0239911 | 37.473 | 467 | 192 | 13 | 4 | 387 | 10 | 459 | 5.48e-78 | 249 |
| Msa1062530 | MtrunA17_Chr7g0241211 | 60.622 | 193 | 74 | 1 | 219 | 411 | 1 | 191 | 1.40e-74 | 231 |
| Msa1062530 | MtrunA17_Chr7g0239851 | 35.759 | 481 | 218 | 10 | 5 | 412 | 11 | 473 | 5.85e-74 | 239 |
| Msa1062530 | MtrunA17_Chr7g0239841 | 36.131 | 429 | 178 | 10 | 5 | 356 | 11 | 420 | 3.86e-72 | 234 |
| Msa1062530 | MtrunA17_Chr7g0239901 | 37.423 | 489 | 209 | 12 | 3 | 410 | 37 | 509 | 6.42e-70 | 230 |
| Msa1062530 | MtrunA17_Chr4g0008511 | 34.406 | 497 | 216 | 15 | 7 | 410 | 11 | 490 | 3.53e-69 | 228 |
| Msa1062530 | MtrunA17_Chr7g0241511 | 41.053 | 380 | 116 | 10 | 137 | 428 | 4 | 363 | 4.49e-66 | 216 |
| Msa1062530 | MtrunA17_Chr7g0241511 | 28.125 | 192 | 116 | 7 | 4 | 178 | 105 | 291 | 6.98e-12 | 66.6 |
| Msa1062530 | MtrunA17_Chr4g0008481 | 32.227 | 512 | 230 | 15 | 5 | 412 | 10 | 508 | 8.15e-62 | 209 |
| Msa1062530 | MtrunA17_Chr4g0007631 | 30.891 | 505 | 234 | 16 | 5 | 410 | 13 | 501 | 9.17e-56 | 193 |
| Msa1062530 | MtrunA17_Chr2g0291981 | 71.186 | 118 | 32 | 2 | 3 | 119 | 13 | 129 | 4.86e-53 | 174 |
| Msa1062530 | MtrunA17_Chr7g0241311 | 51.724 | 174 | 67 | 5 | 4 | 162 | 10 | 181 | 1.03e-50 | 171 |
| Msa1062530 | MtrunA17_Chr7g0239791 | 40.794 | 277 | 138 | 7 | 147 | 412 | 12 | 273 | 5.42e-50 | 171 |
| Msa1062530 | MtrunA17_Chr7g0239791 | 32.124 | 193 | 103 | 8 | 2 | 184 | 66 | 240 | 1.56e-15 | 76.6 |
| Msa1062530 | MtrunA17_Chr7g0241171 | 59.459 | 148 | 58 | 1 | 264 | 411 | 3 | 148 | 7.56e-50 | 166 |
| Msa1062530 | MtrunA17_Chr4g0007341 | 31.466 | 464 | 212 | 16 | 7 | 387 | 16 | 456 | 2.32e-48 | 172 |
| Msa1062530 | MtrunA17_Chr7g0239861 | 35.049 | 408 | 199 | 16 | 60 | 412 | 4 | 400 | 3.38e-48 | 170 |
| Msa1062530 | MtrunA17_Chr3g0110221 | 36.261 | 353 | 164 | 9 | 83 | 397 | 1 | 330 | 3.80e-47 | 166 |
| Msa1062530 | MtrunA17_Chr4g0007251 | 31.656 | 477 | 240 | 13 | 5 | 410 | 15 | 476 | 1.38e-46 | 167 |
| Msa1062530 | MtrunA17_Chr7g0241231 | 57.746 | 142 | 52 | 3 | 2 | 135 | 5 | 146 | 5.95e-46 | 156 |
| Msa1062530 | MtrunA17_Chr7g0241351 | 48.810 | 168 | 74 | 4 | 2 | 162 | 14 | 176 | 1.46e-42 | 149 |
| Msa1062530 | MtrunA17_Chr7g0241361 | 45.366 | 205 | 86 | 5 | 4 | 184 | 16 | 218 | 4.06e-42 | 149 |
| Msa1062530 | MtrunA17_Chr4g0007271 | 28.200 | 500 | 225 | 14 | 5 | 411 | 13 | 471 | 7.95e-40 | 149 |
| Msa1062530 | MtrunA17_Chr4g0007271 | 28.042 | 189 | 98 | 6 | 4 | 162 | 234 | 414 | 5.79e-12 | 67.4 |
| Msa1062530 | MtrunA17_Chr7g0239761 | 35.211 | 284 | 99 | 8 | 5 | 245 | 30 | 271 | 3.36e-34 | 129 |
| Msa1062530 | MtrunA17_Chr7g0239741 | 37.288 | 236 | 129 | 4 | 184 | 412 | 2 | 225 | 5.71e-34 | 127 |
| Msa1062530 | MtrunA17_Chr7g0241281 | 51.471 | 136 | 36 | 1 | 259 | 394 | 1 | 106 | 9.41e-33 | 119 |
| Msa1062530 | MtrunA17_Chr7g0241301 | 54.054 | 111 | 30 | 2 | 4 | 113 | 12 | 102 | 9.59e-32 | 117 |
| Msa1062530 | MtrunA17_Chr1g0150211 | 59.596 | 99 | 40 | 0 | 219 | 317 | 1 | 99 | 2.00e-31 | 117 |
| Msa1062530 | MtrunA17_Chr1g0150211 | 33.036 | 112 | 69 | 2 | 5 | 115 | 1 | 107 | 9.91e-11 | 60.1 |
| Msa1062530 | MtrunA17_Chr7g0241181 | 58.491 | 106 | 44 | 0 | 207 | 312 | 3 | 108 | 6.40e-31 | 115 |
| Msa1062530 | MtrunA17_Chr4g0007231 | 39.785 | 186 | 87 | 9 | 2 | 163 | 7 | 191 | 1.12e-30 | 118 |
| Msa1062530 | MtrunA17_Chr7g0237481 | 56.881 | 109 | 46 | 1 | 207 | 315 | 4 | 111 | 5.72e-30 | 114 |
| Msa1062530 | MtrunA17_Chr7g0263451 | 32.734 | 278 | 143 | 6 | 162 | 410 | 2 | 264 | 1.94e-25 | 105 |
| Msa1062530 | MtrunA17_Chr2g0292001 | 39.024 | 164 | 69 | 3 | 259 | 391 | 1 | 164 | 9.89e-25 | 101 |
| Msa1062530 | MtrunA17_Chr7g0239751 | 39.306 | 173 | 76 | 5 | 5 | 163 | 33 | 190 | 1.65e-24 | 101 |
| Msa1062530 | MtrunA17_Chr7g0241321 | 34.031 | 191 | 90 | 3 | 259 | 413 | 1 | 191 | 5.75e-23 | 95.9 |
| Msa1062530 | MtrunA17_Chr1g0150201 | 41.781 | 146 | 38 | 5 | 83 | 183 | 1 | 144 | 1.19e-22 | 94.0 |
| Msa1062530 | MtrunA17_Chr4g0008491 | 28.212 | 358 | 186 | 13 | 80 | 417 | 5 | 311 | 2.28e-20 | 91.3 |
| Msa1062530 | MtrunA17_Chr2g0291991 | 57.609 | 92 | 32 | 2 | 162 | 253 | 35 | 119 | 4.45e-20 | 85.5 |
| Msa1062530 | MtrunA17_Chr4g0007321 | 30.634 | 284 | 151 | 10 | 162 | 408 | 11 | 285 | 1.34e-19 | 89.0 |
| Msa1062530 | MtrunA17_Chr7g0241501 | 77.083 | 48 | 11 | 0 | 10 | 57 | 1 | 48 | 6.92e-18 | 77.4 |
| Msa1062530 | MtrunA17_Chr1g0212741 | 28.632 | 234 | 109 | 4 | 3 | 183 | 10 | 238 | 1.14e-17 | 82.0 |
| Msa1062530 | MtrunA17_Chr8g0355351 | 27.536 | 207 | 122 | 6 | 2 | 190 | 11 | 207 | 1.39e-17 | 82.0 |
| Msa1062530 | MtrunA17_Chr8g0345251 | 25.000 | 384 | 188 | 14 | 106 | 410 | 16 | 378 | 7.19e-17 | 82.0 |
| Msa1062530 | MtrunA17_Chr4g0007221 | 29.439 | 214 | 130 | 5 | 217 | 410 | 8 | 220 | 7.33e-16 | 77.0 |
| Msa1062530 | MtrunA17_Chr7g0229201 | 29.126 | 206 | 121 | 5 | 3 | 190 | 9 | 207 | 7.38e-16 | 77.0 |
| Msa1062530 | MtrunA17_Chr0c02g0489781 | 29.126 | 206 | 121 | 5 | 3 | 190 | 9 | 207 | 7.38e-16 | 77.0 |
| Msa1062530 | MtrunA17_Chr7g0263461 | 73.810 | 42 | 11 | 0 | 5 | 46 | 40 | 81 | 3.78e-14 | 67.8 |
| Msa1062530 | MtrunA17_Chr1g0212761 | 35.632 | 87 | 51 | 1 | 2 | 88 | 5 | 86 | 1.13e-13 | 68.2 |
| Msa1062530 | MtrunA17_Chr7g0237471 | 43.678 | 87 | 34 | 4 | 91 | 163 | 1 | 86 | 1.71e-13 | 67.8 |
| Msa1062530 | MtrunA17_Chr1g0212771 | 26.425 | 193 | 103 | 6 | 4 | 162 | 9 | 196 | 5.25e-13 | 67.8 |
| Msa1062530 | MtrunA17_Chr7g0241191 | 37.963 | 108 | 56 | 4 | 83 | 179 | 1 | 108 | 1.45e-12 | 65.5 |
| Msa1062530 | MtrunA17_Chr1g0212781 | 39.535 | 86 | 47 | 1 | 6 | 91 | 8 | 88 | 4.87e-12 | 67.4 |
| Msa1062530 | MtrunA17_Chr7g0229211 | 37.647 | 85 | 47 | 2 | 4 | 87 | 8 | 87 | 9.88e-12 | 65.5 |
| Msa1062530 | MtrunA17_Chr8g0355371 | 38.824 | 85 | 46 | 2 | 4 | 87 | 8 | 87 | 3.23e-11 | 63.5 |
| Msa1062530 | MtrunA17_Chr0c02g0489791 | 36.471 | 85 | 48 | 2 | 4 | 87 | 8 | 87 | 8.65e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062530 | AT5G01120.1 | 29.400 | 483 | 253 | 14 | 5 | 406 | 10 | 485 | 6.95e-47 | 169 |
| Msa1062530 | AT5G43240.1 | 30.123 | 488 | 247 | 13 | 5 | 406 | 10 | 489 | 4.20e-46 | 167 |
| Msa1062530 | AT5G43240.3 | 30.123 | 488 | 247 | 13 | 5 | 406 | 10 | 489 | 4.20e-46 | 167 |
| Msa1062530 | AT5G43240.4 | 30.123 | 488 | 247 | 13 | 5 | 406 | 10 | 489 | 4.20e-46 | 167 |
| Msa1062530 | AT5G01150.1 | 29.132 | 484 | 253 | 11 | 6 | 412 | 11 | 481 | 3.23e-45 | 164 |
| Msa1062530 | AT5G01130.1 | 29.654 | 462 | 244 | 10 | 4 | 410 | 9 | 444 | 3.86e-44 | 160 |
| Msa1062530 | AT5G01140.1 | 27.862 | 463 | 246 | 10 | 6 | 406 | 11 | 447 | 4.16e-40 | 150 |
| Msa1062530 | AT3G09110.1 | 31.153 | 321 | 169 | 7 | 6 | 283 | 11 | 322 | 3.86e-39 | 144 |
| Msa1062530 | AT3G09140.2 | 28.252 | 492 | 257 | 14 | 2 | 406 | 7 | 489 | 1.89e-38 | 145 |
| Msa1062530 | AT3G09120.1 | 32.343 | 303 | 142 | 10 | 2 | 253 | 4 | 294 | 2.49e-31 | 122 |
| Msa1062530 | AT5G37320.1 | 25.895 | 475 | 264 | 15 | 14 | 412 | 19 | 481 | 6.93e-28 | 115 |
| Msa1062530 | AT3G09140.1 | 37.313 | 134 | 79 | 2 | 2 | 130 | 7 | 140 | 1.44e-22 | 100 |
| Msa1062530 | AT5G43240.2 | 29.181 | 281 | 152 | 7 | 162 | 406 | 76 | 345 | 2.43e-15 | 77.8 |
Find 90 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATATTGGATTGGAATAT+TGG | 0.138068 | 7_2:-53542321 | None:intergenic |
| GATCCCAAATCCCCTGTTTC+TGG | 0.158108 | 7_2:+53542714 | Msa1062530:CDS |
| ACGTTCCACAAAGGCATTTC+TGG | 0.186386 | 7_2:-53541907 | None:intergenic |
| TATTATGTATGACGAGATTT+TGG | 0.197162 | 7_2:-53543066 | None:intergenic |
| GCCCTTTCCAATACCAATAT+TGG | 0.225436 | 7_2:-53542334 | None:intergenic |
| TCCTCCAGAAACAGGGGATT+TGG | 0.246382 | 7_2:-53542718 | None:intergenic |
| CAAGACCTCGCCACCGTCTT+TGG | 0.252896 | 7_2:-53542682 | None:intergenic |
| CAATGGCTTTGTTAAAGATA+TGG | 0.263863 | 7_2:+53541967 | Msa1062530:CDS |
| AGCTTCTTAACATTGCCTTT+GGG | 0.278379 | 7_2:+53541632 | Msa1062530:CDS |
| CAGCTTCTTAACATTGCCTT+TGG | 0.290669 | 7_2:+53541631 | Msa1062530:CDS |
| AATATCGAAGCAATGAAATT+TGG | 0.294760 | 7_2:+53541686 | Msa1062530:CDS |
| CACAGGACCAACAACGATTA+TGG | 0.311810 | 7_2:+53542746 | Msa1062530:CDS |
| TTCCAATCCAATATTGGTAT+TGG | 0.318757 | 7_2:+53542327 | Msa1062530:CDS |
| CCAATATTCCAATCCAATAT+TGG | 0.341843 | 7_2:+53542321 | Msa1062530:CDS |
| GTGACATATCCTCCAGAAAC+AGG | 0.363395 | 7_2:-53542726 | None:intergenic |
| AAAGCCATTGTCAAAGGAAC+TGG | 0.368048 | 7_2:-53541954 | None:intergenic |
| CGAAGTTACATTGAAAGTTA+TGG | 0.380657 | 7_2:+53541544 | Msa1062530:CDS |
| CCTCCAGAAACAGGGGATTT+GGG | 0.381514 | 7_2:-53542717 | None:intergenic |
| TCAACTAGAAACATTCTGTT+TGG | 0.399046 | 7_2:+53542408 | Msa1062530:CDS |
| TCCAATATTGGTATTGGAAA+GGG | 0.404861 | 7_2:+53542333 | Msa1062530:CDS |
| ATCTTGATGGGAAATATCTA+TGG | 0.417112 | 7_2:+53541741 | Msa1062530:CDS |
| TTCCAATACCAATATTGGAT+TGG | 0.432472 | 7_2:-53542329 | None:intergenic |
| TGAGTCCAGAGAGATGTTTA+CGG | 0.461882 | 7_2:+53542562 | Msa1062530:CDS |
| CAAAGCGTGCAAGATCTTGA+TGG | 0.464561 | 7_2:+53541728 | Msa1062530:CDS |
| CTACCTTCCATGGAGTTCCT+TGG | 0.467829 | 7_2:-53541794 | None:intergenic |
| TCTGTCACCATAATCGTTGT+TGG | 0.469184 | 7_2:-53542753 | None:intergenic |
| GCTTCTTAACATTGCCTTTG+GGG | 0.476502 | 7_2:+53541633 | Msa1062530:CDS |
| TTTCCCAGTTCCTTTGACAA+TGG | 0.481427 | 7_2:+53541950 | Msa1062530:CDS |
| ACACCATCAAACGATGTCAT+TGG | 0.485386 | 7_2:-53542792 | None:intergenic |
| TTCATATCTTGAAAGAATGA+AGG | 0.497817 | 7_2:+53542815 | Msa1062530:CDS |
| ACTCCAATGACATCGTTTGA+TGG | 0.503158 | 7_2:+53542789 | Msa1062530:CDS |
| CCTCGTACAACTACCTTCCA+TGG | 0.511757 | 7_2:-53541804 | None:intergenic |
| AAGCCCTCATCTGCATATGT+TGG | 0.515996 | 7_2:-53542279 | None:intergenic |
| GCAGATGCTGATAAAACTAC+TGG | 0.516019 | 7_2:+53542377 | Msa1062530:CDS |
| TGGTTCCTTACTCCATATGT+AGG | 0.516443 | 7_2:-53542627 | None:intergenic |
| AGGAACCAGAAATGCCTTTG+TGG | 0.516773 | 7_2:+53541902 | Msa1062530:CDS |
| GGAGTGTTGCAAATGCTAGA+AGG | 0.519900 | 7_2:+53542489 | Msa1062530:CDS |
| ATCCAATATTGGTATTGGAA+AGG | 0.523305 | 7_2:+53542332 | Msa1062530:CDS |
| TGTAACCGTAAACATCTCTC+TGG | 0.524580 | 7_2:-53542567 | None:intergenic |
| TTTAACAAAGCCATTGTCAA+AGG | 0.526591 | 7_2:-53541960 | None:intergenic |
| AAGTTATGGTGGACAAAGAA+AGG | 0.528542 | 7_2:+53541558 | Msa1062530:CDS |
| GATTATGGTGACAGACGACT+TGG | 0.531122 | 7_2:+53542761 | Msa1062530:CDS |
| ACTCACCTAAGTAGTGTTTG+AGG | 0.535054 | 7_2:-53543024 | None:intergenic |
| CAATGTAACTTCGTCAGCCA+TGG | 0.535493 | 7_2:-53541534 | None:intergenic |
| CAGAGGAGTCTTCGAGAGCA+AGG | 0.548998 | 7_2:-53542232 | None:intergenic |
| TGTCGTTAATATTAGAGTCA+AGG | 0.551216 | 7_2:+53542863 | Msa1062530:CDS |
| TCGACATCTGCTTTGACTAA+CGG | 0.558603 | 7_2:+53543001 | Msa1062530:CDS |
| AGTACTTTACCTGTGAGGGC+TGG | 0.558615 | 7_2:+53541858 | Msa1062530:CDS |
| AAAGCGTGCAAGATCTTGAT+GGG | 0.571030 | 7_2:+53541729 | Msa1062530:CDS |
| ATTGTCAAAGGAACTGGGAA+AGG | 0.587278 | 7_2:-53541948 | None:intergenic |
| TGGGAAATATCTATGGTCAC+AGG | 0.588806 | 7_2:+53541748 | Msa1062530:CDS |
| ATTGGCTTACCCTCTTCAGA+TGG | 0.594507 | 7_2:-53542303 | None:intergenic |
| GTTTCTGGAGGATATGTCAC+AGG | 0.594537 | 7_2:+53542729 | Msa1062530:CDS |
| GAAACCAACATATGCAGATG+AGG | 0.595214 | 7_2:+53542275 | Msa1062530:CDS |
| TGAGGGCTTACCATCTGAAG+AGG | 0.596168 | 7_2:+53542293 | Msa1062530:CDS |
| AACGGCCTCAAACACTACTT+AGG | 0.596286 | 7_2:+53543019 | Msa1062530:CDS |
| ACACTTCATCCAGCCCTCAC+AGG | 0.596805 | 7_2:-53541867 | None:intergenic |
| CCCAAATCCCCTGTTTCTGG+AGG | 0.597019 | 7_2:+53542717 | Msa1062530:CDS |
| ATTTCCTCAATGTCATTCAG+AGG | 0.597909 | 7_2:-53542840 | None:intergenic |
| ATCTGCTTACCCTCTTCAGA+TGG | 0.600894 | 7_2:-53542360 | None:intergenic |
| TGACATATCCTCCAGAAACA+GGG | 0.601751 | 7_2:-53542725 | None:intergenic |
| ACTCAAGCCAAGGAACTCCA+TGG | 0.606428 | 7_2:+53541787 | Msa1062530:CDS |
| GGTCCCTCTGAATGACATTG+AGG | 0.609050 | 7_2:+53542836 | Msa1062530:CDS |
| TTTAAGATAAAGTCTGTCAG+AGG | 0.610371 | 7_2:-53542249 | None:intergenic |
| GGGGACTATTGCAAGACTAG+TGG | 0.610839 | 7_2:+53541652 | Msa1062530:CDS |
| AAGAAATGCTACTCAAGCCA+AGG | 0.611550 | 7_2:+53541777 | Msa1062530:CDS |
| AAAGGGCTTACCATCTGAAG+AGG | 0.612181 | 7_2:+53542350 | Msa1062530:CDS |
| CATTCTGTTTGGTATAGCAG+AGG | 0.612193 | 7_2:+53542419 | Msa1062530:CDS |
| TTTCCTCAATGTCATTCAGA+GGG | 0.612638 | 7_2:-53542839 | None:intergenic |
| GTGCAGTACTTTACCTGTGA+GGG | 0.618676 | 7_2:+53541854 | Msa1062530:CDS |
| AAGCCATTGTCAAAGGAACT+GGG | 0.620348 | 7_2:-53541953 | None:intergenic |
| AGTTACATTGAAAGTTATGG+TGG | 0.634199 | 7_2:+53541547 | Msa1062530:CDS |
| AAACCAACATATGCAGATGA+GGG | 0.635875 | 7_2:+53542276 | Msa1062530:CDS |
| GCTGTGCTTACTTCCAAAGA+CGG | 0.639419 | 7_2:+53542669 | Msa1062530:CDS |
| AAGCCAAGGAACTCCATGGA+AGG | 0.641089 | 7_2:+53541791 | Msa1062530:CDS |
| TCACAGGTAAAGTACTGCAC+CGG | 0.644089 | 7_2:-53541851 | None:intergenic |
| TACTTCCAAAGACGGTGGCG+AGG | 0.644172 | 7_2:+53542677 | Msa1062530:CDS |
| TGTGGAACGTATTGTAACAG+AGG | 0.655029 | 7_2:+53541920 | Msa1062530:CDS |
| ACTGAACATCGATGACACAC+CGG | 0.657838 | 7_2:+53541832 | Msa1062530:CDS |
| GGTGCAGTACTTTACCTGTG+AGG | 0.661417 | 7_2:+53541853 | Msa1062530:CDS |
| CCATGGAAGGTAGTTGTACG+AGG | 0.663929 | 7_2:+53541804 | Msa1062530:CDS |
| GAGGGCTTACCATCTGAAGA+GGG | 0.666261 | 7_2:+53542294 | Msa1062530:CDS |
| AAGGGCTTACCATCTGAAGA+GGG | 0.666261 | 7_2:+53542351 | Msa1062530:CDS |
| GACATATCCTCCAGAAACAG+GGG | 0.675682 | 7_2:-53542724 | None:intergenic |
| ATTTGCAACACTCCTCCTAG+AGG | 0.676162 | 7_2:-53542480 | None:intergenic |
| GTTAGTCAAAGCAGATGTCG+AGG | 0.681782 | 7_2:-53542999 | None:intergenic |
| CGTTAATATTAGAGTCAAGG+AGG | 0.683308 | 7_2:+53542866 | Msa1062530:CDS |
| AGTCTTGCAATAGTCCCCAA+AGG | 0.691765 | 7_2:-53541647 | None:intergenic |
| TGTTACAATACGTTCCACAA+AGG | 0.700027 | 7_2:-53541916 | None:intergenic |
| GTGCTTACTTCCAAAGACGG+TGG | 0.717388 | 7_2:+53542672 | Msa1062530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGCTATATTTTTATCAT+TGG | + | chr7_2:53542147-53542166 | Msa1062530:intron | 15.0% |
| !!! | GCTTTTATATAAAATATCAA+TGG | - | chr7_2:53542532-53542551 | None:intergenic | 15.0% |
| !!! | AATTGCTATATTTTTATCAT+TGG | + | chr7_2:53542147-53542166 | Msa1062530:intron | 15.0% |
| !!! | GCTTTTATATAAAATATCAA+TGG | - | chr7_2:53542532-53542551 | None:intergenic | 15.0% |
| ! | AATATCGAAGCAATGAAATT+TGG | + | chr7_2:53541686-53541705 | Msa1062530:CDS | 25.0% |
| ! | TTCATATCTTGAAAGAATGA+AGG | + | chr7_2:53542815-53542834 | Msa1062530:CDS | 25.0% |
| !! | TATTATGTATGACGAGATTT+TGG | - | chr7_2:53543069-53543088 | None:intergenic | 25.0% |
| ! | AATATCGAAGCAATGAAATT+TGG | + | chr7_2:53541686-53541705 | Msa1062530:CDS | 25.0% |
| ! | TTCATATCTTGAAAGAATGA+AGG | + | chr7_2:53542815-53542834 | Msa1062530:CDS | 25.0% |
| !! | TATTATGTATGACGAGATTT+TGG | - | chr7_2:53543069-53543088 | None:intergenic | 25.0% |
| CGAAGTTACATTGAAAGTTA+TGG | + | chr7_2:53541544-53541563 | Msa1062530:CDS | 30.0% | |
| AGTTACATTGAAAGTTATGG+TGG | + | chr7_2:53541547-53541566 | Msa1062530:CDS | 30.0% | |
| ATCTTGATGGGAAATATCTA+TGG | + | chr7_2:53541741-53541760 | Msa1062530:CDS | 30.0% | |
| ! | TGAAGTGTGTGAGTATTTTT+AGG | + | chr7_2:53541882-53541901 | Msa1062530:CDS | 30.0% |
| TTTAACAAAGCCATTGTCAA+AGG | - | chr7_2:53541963-53541982 | None:intergenic | 30.0% | |
| !! | CAATGGCTTTGTTAAAGATA+TGG | + | chr7_2:53541967-53541986 | Msa1062530:CDS | 30.0% |
| AAAAACACTACTTATCAGCA+AGG | + | chr7_2:53542096-53542115 | Msa1062530:intron | 30.0% | |
| ATATCTATGTTTATACGTGC+AGG | + | chr7_2:53542188-53542207 | Msa1062530:intron | 30.0% | |
| ! | TTTAAGATAAAGTCTGTCAG+AGG | - | chr7_2:53542252-53542271 | None:intergenic | 30.0% |
| ! | CCAATATTGGATTGGAATAT+TGG | - | chr7_2:53542324-53542343 | None:intergenic | 30.0% |
| CCAATATTCCAATCCAATAT+TGG | + | chr7_2:53542321-53542340 | Msa1062530:CDS | 30.0% | |
| TTCCAATCCAATATTGGTAT+TGG | + | chr7_2:53542327-53542346 | Msa1062530:CDS | 30.0% | |
| TTCCAATACCAATATTGGAT+TGG | - | chr7_2:53542332-53542351 | None:intergenic | 30.0% | |
| ! | ATCCAATATTGGTATTGGAA+AGG | + | chr7_2:53542332-53542351 | Msa1062530:CDS | 30.0% |
| ! | TCCAATATTGGTATTGGAAA+GGG | + | chr7_2:53542333-53542352 | Msa1062530:CDS | 30.0% |
| TCAACTAGAAACATTCTGTT+TGG | + | chr7_2:53542408-53542427 | Msa1062530:CDS | 30.0% | |
| CCATATGTAGGAAAAATTTG+AGG | - | chr7_2:53542618-53542637 | None:intergenic | 30.0% | |
| ! | CCTCAAATTTTTCCTACATA+TGG | + | chr7_2:53542615-53542634 | Msa1062530:CDS | 30.0% |
| ! | TTTTTCCTACATATGGAGTA+AGG | + | chr7_2:53542622-53542641 | Msa1062530:CDS | 30.0% |
| !!! | CTGTTTTGATTGGTAAAATC+TGG | - | chr7_2:53542650-53542669 | None:intergenic | 30.0% |
| TGTCGTTAATATTAGAGTCA+AGG | + | chr7_2:53542863-53542882 | Msa1062530:CDS | 30.0% | |
| ! | GATTGCATAATTTGTACCTA+TGG | + | chr7_2:53542937-53542956 | Msa1062530:intron | 30.0% |
| ! | ATAATTTGTACCTATGGTGA+TGG | + | chr7_2:53542943-53542962 | Msa1062530:intron | 30.0% |
| !! | ATGACGAGATTTTGGTAATT+TGG | - | chr7_2:53543061-53543080 | None:intergenic | 30.0% |
| CGAAGTTACATTGAAAGTTA+TGG | + | chr7_2:53541544-53541563 | Msa1062530:CDS | 30.0% | |
| AGTTACATTGAAAGTTATGG+TGG | + | chr7_2:53541547-53541566 | Msa1062530:CDS | 30.0% | |
| ATCTTGATGGGAAATATCTA+TGG | + | chr7_2:53541741-53541760 | Msa1062530:CDS | 30.0% | |
| ! | TGAAGTGTGTGAGTATTTTT+AGG | + | chr7_2:53541882-53541901 | Msa1062530:CDS | 30.0% |
| TTTAACAAAGCCATTGTCAA+AGG | - | chr7_2:53541963-53541982 | None:intergenic | 30.0% | |
| !! | CAATGGCTTTGTTAAAGATA+TGG | + | chr7_2:53541967-53541986 | Msa1062530:CDS | 30.0% |
| AAAAACACTACTTATCAGCA+AGG | + | chr7_2:53542096-53542115 | Msa1062530:intron | 30.0% | |
| ATATCTATGTTTATACGTGC+AGG | + | chr7_2:53542188-53542207 | Msa1062530:intron | 30.0% | |
| ! | TTTAAGATAAAGTCTGTCAG+AGG | - | chr7_2:53542252-53542271 | None:intergenic | 30.0% |
| ! | CCAATATTGGATTGGAATAT+TGG | - | chr7_2:53542324-53542343 | None:intergenic | 30.0% |
| CCAATATTCCAATCCAATAT+TGG | + | chr7_2:53542321-53542340 | Msa1062530:CDS | 30.0% | |
| TTCCAATCCAATATTGGTAT+TGG | + | chr7_2:53542327-53542346 | Msa1062530:CDS | 30.0% | |
| TTCCAATACCAATATTGGAT+TGG | - | chr7_2:53542332-53542351 | None:intergenic | 30.0% | |
| ! | ATCCAATATTGGTATTGGAA+AGG | + | chr7_2:53542332-53542351 | Msa1062530:CDS | 30.0% |
| ! | TCCAATATTGGTATTGGAAA+GGG | + | chr7_2:53542333-53542352 | Msa1062530:CDS | 30.0% |
| TCAACTAGAAACATTCTGTT+TGG | + | chr7_2:53542408-53542427 | Msa1062530:CDS | 30.0% | |
| CCATATGTAGGAAAAATTTG+AGG | - | chr7_2:53542618-53542637 | None:intergenic | 30.0% | |
| ! | CCTCAAATTTTTCCTACATA+TGG | + | chr7_2:53542615-53542634 | Msa1062530:CDS | 30.0% |
| ! | TTTTTCCTACATATGGAGTA+AGG | + | chr7_2:53542622-53542641 | Msa1062530:CDS | 30.0% |
| !!! | CTGTTTTGATTGGTAAAATC+TGG | - | chr7_2:53542650-53542669 | None:intergenic | 30.0% |
| TGTCGTTAATATTAGAGTCA+AGG | + | chr7_2:53542863-53542882 | Msa1062530:CDS | 30.0% | |
| ! | GATTGCATAATTTGTACCTA+TGG | + | chr7_2:53542937-53542956 | Msa1062530:intron | 30.0% |
| ! | ATAATTTGTACCTATGGTGA+TGG | + | chr7_2:53542943-53542962 | Msa1062530:intron | 30.0% |
| !! | ATGACGAGATTTTGGTAATT+TGG | - | chr7_2:53543061-53543080 | None:intergenic | 30.0% |
| !! | AAGTTATGGTGGACAAAGAA+AGG | + | chr7_2:53541558-53541577 | Msa1062530:CDS | 35.0% |
| AGCTTCTTAACATTGCCTTT+GGG | + | chr7_2:53541632-53541651 | Msa1062530:CDS | 35.0% | |
| TGTTACAATACGTTCCACAA+AGG | - | chr7_2:53541919-53541938 | None:intergenic | 35.0% | |
| ATGCCTAATGATCTAGCAAA+AGG | + | chr7_2:53542022-53542041 | Msa1062530:intron | 35.0% | |
| ! | AGACCTTTTGCTAGATCATT+AGG | - | chr7_2:53542028-53542047 | None:intergenic | 35.0% |
| CTAAGTTTACTGCAGATGAA+CGG | + | chr7_2:53542046-53542065 | Msa1062530:intron | 35.0% | |
| AAACCAACATATGCAGATGA+GGG | + | chr7_2:53542276-53542295 | Msa1062530:CDS | 35.0% | |
| ! | TATAGCAGAGGAAGATTTTG+CGG | + | chr7_2:53542431-53542450 | Msa1062530:CDS | 35.0% |
| !! | AGTTTTCTCACTTTTCCTCT+AGG | + | chr7_2:53542465-53542484 | Msa1062530:CDS | 35.0% |
| ! | ATGTAGGAAAAATTTGAGGC+AGG | - | chr7_2:53542614-53542633 | None:intergenic | 35.0% |
| TTTCCTCAATGTCATTCAGA+GGG | - | chr7_2:53542842-53542861 | None:intergenic | 35.0% | |
| ATTTCCTCAATGTCATTCAG+AGG | - | chr7_2:53542843-53542862 | None:intergenic | 35.0% | |
| CGTTAATATTAGAGTCAAGG+AGG | + | chr7_2:53542866-53542885 | Msa1062530:CDS | 35.0% | |
| !! | AAGTTATGGTGGACAAAGAA+AGG | + | chr7_2:53541558-53541577 | Msa1062530:CDS | 35.0% |
| AGCTTCTTAACATTGCCTTT+GGG | + | chr7_2:53541632-53541651 | Msa1062530:CDS | 35.0% | |
| TGTTACAATACGTTCCACAA+AGG | - | chr7_2:53541919-53541938 | None:intergenic | 35.0% | |
| ATGCCTAATGATCTAGCAAA+AGG | + | chr7_2:53542022-53542041 | Msa1062530:intron | 35.0% | |
| ! | AGACCTTTTGCTAGATCATT+AGG | - | chr7_2:53542028-53542047 | None:intergenic | 35.0% |
| CTAAGTTTACTGCAGATGAA+CGG | + | chr7_2:53542046-53542065 | Msa1062530:intron | 35.0% | |
| AAACCAACATATGCAGATGA+GGG | + | chr7_2:53542276-53542295 | Msa1062530:CDS | 35.0% | |
| ! | TATAGCAGAGGAAGATTTTG+CGG | + | chr7_2:53542431-53542450 | Msa1062530:CDS | 35.0% |
| !! | AGTTTTCTCACTTTTCCTCT+AGG | + | chr7_2:53542465-53542484 | Msa1062530:CDS | 35.0% |
| ! | ATGTAGGAAAAATTTGAGGC+AGG | - | chr7_2:53542614-53542633 | None:intergenic | 35.0% |
| TTTCCTCAATGTCATTCAGA+GGG | - | chr7_2:53542842-53542861 | None:intergenic | 35.0% | |
| ATTTCCTCAATGTCATTCAG+AGG | - | chr7_2:53542843-53542862 | None:intergenic | 35.0% | |
| CGTTAATATTAGAGTCAAGG+AGG | + | chr7_2:53542866-53542885 | Msa1062530:CDS | 35.0% | |
| !! | GAACAGAGTTTTGTATGCTG+AGG | + | chr7_2:53541580-53541599 | Msa1062530:CDS | 40.0% |
| CAGCTTCTTAACATTGCCTT+TGG | + | chr7_2:53541631-53541650 | Msa1062530:CDS | 40.0% | |
| GCTTCTTAACATTGCCTTTG+GGG | + | chr7_2:53541633-53541652 | Msa1062530:CDS | 40.0% | |
| AAAGCGTGCAAGATCTTGAT+GGG | + | chr7_2:53541729-53541748 | Msa1062530:CDS | 40.0% | |
| TGGGAAATATCTATGGTCAC+AGG | + | chr7_2:53541748-53541767 | Msa1062530:CDS | 40.0% | |
| AAGAAATGCTACTCAAGCCA+AGG | + | chr7_2:53541777-53541796 | Msa1062530:CDS | 40.0% | |
| TGTGGAACGTATTGTAACAG+AGG | + | chr7_2:53541920-53541939 | Msa1062530:CDS | 40.0% | |
| ATTGTCAAAGGAACTGGGAA+AGG | - | chr7_2:53541951-53541970 | None:intergenic | 40.0% | |
| TTTCCCAGTTCCTTTGACAA+TGG | + | chr7_2:53541950-53541969 | Msa1062530:CDS | 40.0% | |
| AAGCCATTGTCAAAGGAACT+GGG | - | chr7_2:53541956-53541975 | None:intergenic | 40.0% | |
| AAAGCCATTGTCAAAGGAAC+TGG | - | chr7_2:53541957-53541976 | None:intergenic | 40.0% | |
| AACACTACTTATCAGCAAGG+AGG | + | chr7_2:53542099-53542118 | Msa1062530:intron | 40.0% | |
| GAAACCAACATATGCAGATG+AGG | + | chr7_2:53542275-53542294 | Msa1062530:CDS | 40.0% | |
| GCCCTTTCCAATACCAATAT+TGG | - | chr7_2:53542337-53542356 | None:intergenic | 40.0% | |
| GCAGATGCTGATAAAACTAC+TGG | + | chr7_2:53542377-53542396 | Msa1062530:CDS | 40.0% | |
| CATTCTGTTTGGTATAGCAG+AGG | + | chr7_2:53542419-53542438 | Msa1062530:CDS | 40.0% | |
| !! | TTTCTCACTTTTCCTCTAGG+AGG | + | chr7_2:53542468-53542487 | Msa1062530:CDS | 40.0% |
| TGAGTCCAGAGAGATGTTTA+CGG | + | chr7_2:53542562-53542581 | Msa1062530:CDS | 40.0% | |
| TGTAACCGTAAACATCTCTC+TGG | - | chr7_2:53542570-53542589 | None:intergenic | 40.0% | |
| TGGTTCCTTACTCCATATGT+AGG | - | chr7_2:53542630-53542649 | None:intergenic | 40.0% | |
| !!! | GTAAGCACAGCTGTTTTGAT+TGG | - | chr7_2:53542660-53542679 | None:intergenic | 40.0% |
| TGACATATCCTCCAGAAACA+GGG | - | chr7_2:53542728-53542747 | None:intergenic | 40.0% | |
| TCTGTCACCATAATCGTTGT+TGG | - | chr7_2:53542756-53542775 | None:intergenic | 40.0% | |
| ACTCCAATGACATCGTTTGA+TGG | + | chr7_2:53542789-53542808 | Msa1062530:CDS | 40.0% | |
| ACACCATCAAACGATGTCAT+TGG | - | chr7_2:53542795-53542814 | None:intergenic | 40.0% | |
| TCGACATCTGCTTTGACTAA+CGG | + | chr7_2:53543001-53543020 | Msa1062530:CDS | 40.0% | |
| ACTCACCTAAGTAGTGTTTG+AGG | - | chr7_2:53543027-53543046 | None:intergenic | 40.0% | |
| !! | GAACAGAGTTTTGTATGCTG+AGG | + | chr7_2:53541580-53541599 | Msa1062530:CDS | 40.0% |
| CAGCTTCTTAACATTGCCTT+TGG | + | chr7_2:53541631-53541650 | Msa1062530:CDS | 40.0% | |
| GCTTCTTAACATTGCCTTTG+GGG | + | chr7_2:53541633-53541652 | Msa1062530:CDS | 40.0% | |
| AAAGCGTGCAAGATCTTGAT+GGG | + | chr7_2:53541729-53541748 | Msa1062530:CDS | 40.0% | |
| TGGGAAATATCTATGGTCAC+AGG | + | chr7_2:53541748-53541767 | Msa1062530:CDS | 40.0% | |
| AAGAAATGCTACTCAAGCCA+AGG | + | chr7_2:53541777-53541796 | Msa1062530:CDS | 40.0% | |
| TGTGGAACGTATTGTAACAG+AGG | + | chr7_2:53541920-53541939 | Msa1062530:CDS | 40.0% | |
| ATTGTCAAAGGAACTGGGAA+AGG | - | chr7_2:53541951-53541970 | None:intergenic | 40.0% | |
| TTTCCCAGTTCCTTTGACAA+TGG | + | chr7_2:53541950-53541969 | Msa1062530:CDS | 40.0% | |
| AAGCCATTGTCAAAGGAACT+GGG | - | chr7_2:53541956-53541975 | None:intergenic | 40.0% | |
| AAAGCCATTGTCAAAGGAAC+TGG | - | chr7_2:53541957-53541976 | None:intergenic | 40.0% | |
| AACACTACTTATCAGCAAGG+AGG | + | chr7_2:53542099-53542118 | Msa1062530:intron | 40.0% | |
| GAAACCAACATATGCAGATG+AGG | + | chr7_2:53542275-53542294 | Msa1062530:CDS | 40.0% | |
| GCCCTTTCCAATACCAATAT+TGG | - | chr7_2:53542337-53542356 | None:intergenic | 40.0% | |
| GCAGATGCTGATAAAACTAC+TGG | + | chr7_2:53542377-53542396 | Msa1062530:CDS | 40.0% | |
| CATTCTGTTTGGTATAGCAG+AGG | + | chr7_2:53542419-53542438 | Msa1062530:CDS | 40.0% | |
| !! | TTTCTCACTTTTCCTCTAGG+AGG | + | chr7_2:53542468-53542487 | Msa1062530:CDS | 40.0% |
| TGAGTCCAGAGAGATGTTTA+CGG | + | chr7_2:53542562-53542581 | Msa1062530:CDS | 40.0% | |
| TGTAACCGTAAACATCTCTC+TGG | - | chr7_2:53542570-53542589 | None:intergenic | 40.0% | |
| TGGTTCCTTACTCCATATGT+AGG | - | chr7_2:53542630-53542649 | None:intergenic | 40.0% | |
| !!! | GTAAGCACAGCTGTTTTGAT+TGG | - | chr7_2:53542660-53542679 | None:intergenic | 40.0% |
| TGACATATCCTCCAGAAACA+GGG | - | chr7_2:53542728-53542747 | None:intergenic | 40.0% | |
| TCTGTCACCATAATCGTTGT+TGG | - | chr7_2:53542756-53542775 | None:intergenic | 40.0% | |
| ACTCCAATGACATCGTTTGA+TGG | + | chr7_2:53542789-53542808 | Msa1062530:CDS | 40.0% | |
| ACACCATCAAACGATGTCAT+TGG | - | chr7_2:53542795-53542814 | None:intergenic | 40.0% | |
| TCGACATCTGCTTTGACTAA+CGG | + | chr7_2:53543001-53543020 | Msa1062530:CDS | 40.0% | |
| ACTCACCTAAGTAGTGTTTG+AGG | - | chr7_2:53543027-53543046 | None:intergenic | 40.0% | |
| !! | AGAGTTTTGTATGCTGAGGC+TGG | + | chr7_2:53541584-53541603 | Msa1062530:CDS | 45.0% |
| !! | GAGTTTTGTATGCTGAGGCT+GGG | + | chr7_2:53541585-53541604 | Msa1062530:CDS | 45.0% |
| AGTCTTGCAATAGTCCCCAA+AGG | - | chr7_2:53541650-53541669 | None:intergenic | 45.0% | |
| CAAAGCGTGCAAGATCTTGA+TGG | + | chr7_2:53541728-53541747 | Msa1062530:CDS | 45.0% | |
| ACTGAACATCGATGACACAC+CGG | + | chr7_2:53541832-53541851 | Msa1062530:CDS | 45.0% | |
| !! | TCACAGGTAAAGTACTGCAC+CGG | - | chr7_2:53541854-53541873 | None:intergenic | 45.0% |
| GTGCAGTACTTTACCTGTGA+GGG | + | chr7_2:53541854-53541873 | Msa1062530:CDS | 45.0% | |
| AGGAACCAGAAATGCCTTTG+TGG | + | chr7_2:53541902-53541921 | Msa1062530:CDS | 45.0% | |
| !! | ACGTTCCACAAAGGCATTTC+TGG | - | chr7_2:53541910-53541929 | None:intergenic | 45.0% |
| ACTACTTATCAGCAAGGAGG+AGG | + | chr7_2:53542102-53542121 | Msa1062530:intron | 45.0% | |
| AAGCCCTCATCTGCATATGT+TGG | - | chr7_2:53542282-53542301 | None:intergenic | 45.0% | |
| ! | ATTGGCTTACCCTCTTCAGA+TGG | - | chr7_2:53542306-53542325 | None:intergenic | 45.0% |
| AAAGGGCTTACCATCTGAAG+AGG | + | chr7_2:53542350-53542369 | Msa1062530:CDS | 45.0% | |
| AAGGGCTTACCATCTGAAGA+GGG | + | chr7_2:53542351-53542370 | Msa1062530:CDS | 45.0% | |
| ATCTGCTTACCCTCTTCAGA+TGG | - | chr7_2:53542363-53542382 | None:intergenic | 45.0% | |
| ATTTGCAACACTCCTCCTAG+AGG | - | chr7_2:53542483-53542502 | None:intergenic | 45.0% | |
| !! | GGAGTGTTGCAAATGCTAGA+AGG | + | chr7_2:53542489-53542508 | Msa1062530:CDS | 45.0% |
| GCTGTGCTTACTTCCAAAGA+CGG | + | chr7_2:53542669-53542688 | Msa1062530:CDS | 45.0% | |
| GACATATCCTCCAGAAACAG+GGG | - | chr7_2:53542727-53542746 | None:intergenic | 45.0% | |
| GTGACATATCCTCCAGAAAC+AGG | - | chr7_2:53542729-53542748 | None:intergenic | 45.0% | |
| ! | GTTTCTGGAGGATATGTCAC+AGG | + | chr7_2:53542729-53542748 | Msa1062530:CDS | 45.0% |
| CACAGGACCAACAACGATTA+TGG | + | chr7_2:53542746-53542765 | Msa1062530:CDS | 45.0% | |
| GATTATGGTGACAGACGACT+TGG | + | chr7_2:53542761-53542780 | Msa1062530:CDS | 45.0% | |
| GTTAGTCAAAGCAGATGTCG+AGG | - | chr7_2:53543002-53543021 | None:intergenic | 45.0% | |
| AACGGCCTCAAACACTACTT+AGG | + | chr7_2:53543019-53543038 | Msa1062530:CDS | 45.0% | |
| !! | AGAGTTTTGTATGCTGAGGC+TGG | + | chr7_2:53541584-53541603 | Msa1062530:CDS | 45.0% |
| !! | GAGTTTTGTATGCTGAGGCT+GGG | + | chr7_2:53541585-53541604 | Msa1062530:CDS | 45.0% |
| AGTCTTGCAATAGTCCCCAA+AGG | - | chr7_2:53541650-53541669 | None:intergenic | 45.0% | |
| CAAAGCGTGCAAGATCTTGA+TGG | + | chr7_2:53541728-53541747 | Msa1062530:CDS | 45.0% | |
| ACTGAACATCGATGACACAC+CGG | + | chr7_2:53541832-53541851 | Msa1062530:CDS | 45.0% | |
| !! | TCACAGGTAAAGTACTGCAC+CGG | - | chr7_2:53541854-53541873 | None:intergenic | 45.0% |
| GTGCAGTACTTTACCTGTGA+GGG | + | chr7_2:53541854-53541873 | Msa1062530:CDS | 45.0% | |
| AGGAACCAGAAATGCCTTTG+TGG | + | chr7_2:53541902-53541921 | Msa1062530:CDS | 45.0% | |
| !! | ACGTTCCACAAAGGCATTTC+TGG | - | chr7_2:53541910-53541929 | None:intergenic | 45.0% |
| ACTACTTATCAGCAAGGAGG+AGG | + | chr7_2:53542102-53542121 | Msa1062530:intron | 45.0% | |
| AAGCCCTCATCTGCATATGT+TGG | - | chr7_2:53542282-53542301 | None:intergenic | 45.0% | |
| ! | ATTGGCTTACCCTCTTCAGA+TGG | - | chr7_2:53542306-53542325 | None:intergenic | 45.0% |
| AAAGGGCTTACCATCTGAAG+AGG | + | chr7_2:53542350-53542369 | Msa1062530:CDS | 45.0% | |
| AAGGGCTTACCATCTGAAGA+GGG | + | chr7_2:53542351-53542370 | Msa1062530:CDS | 45.0% | |
| ATCTGCTTACCCTCTTCAGA+TGG | - | chr7_2:53542363-53542382 | None:intergenic | 45.0% | |
| ATTTGCAACACTCCTCCTAG+AGG | - | chr7_2:53542483-53542502 | None:intergenic | 45.0% | |
| !! | GGAGTGTTGCAAATGCTAGA+AGG | + | chr7_2:53542489-53542508 | Msa1062530:CDS | 45.0% |
| GCTGTGCTTACTTCCAAAGA+CGG | + | chr7_2:53542669-53542688 | Msa1062530:CDS | 45.0% | |
| GACATATCCTCCAGAAACAG+GGG | - | chr7_2:53542727-53542746 | None:intergenic | 45.0% | |
| GTGACATATCCTCCAGAAAC+AGG | - | chr7_2:53542729-53542748 | None:intergenic | 45.0% | |
| ! | GTTTCTGGAGGATATGTCAC+AGG | + | chr7_2:53542729-53542748 | Msa1062530:CDS | 45.0% |
| CACAGGACCAACAACGATTA+TGG | + | chr7_2:53542746-53542765 | Msa1062530:CDS | 45.0% | |
| GATTATGGTGACAGACGACT+TGG | + | chr7_2:53542761-53542780 | Msa1062530:CDS | 45.0% | |
| GTTAGTCAAAGCAGATGTCG+AGG | - | chr7_2:53543002-53543021 | None:intergenic | 45.0% | |
| AACGGCCTCAAACACTACTT+AGG | + | chr7_2:53543019-53543038 | Msa1062530:CDS | 45.0% | |
| GGGGACTATTGCAAGACTAG+TGG | + | chr7_2:53541652-53541671 | Msa1062530:CDS | 50.0% | |
| ACTCAAGCCAAGGAACTCCA+TGG | + | chr7_2:53541787-53541806 | Msa1062530:CDS | 50.0% | |
| AAGCCAAGGAACTCCATGGA+AGG | + | chr7_2:53541791-53541810 | Msa1062530:CDS | 50.0% | |
| CTACCTTCCATGGAGTTCCT+TGG | - | chr7_2:53541797-53541816 | None:intergenic | 50.0% | |
| CCTCGTACAACTACCTTCCA+TGG | - | chr7_2:53541807-53541826 | None:intergenic | 50.0% | |
| CCATGGAAGGTAGTTGTACG+AGG | + | chr7_2:53541804-53541823 | Msa1062530:CDS | 50.0% | |
| GGTGCAGTACTTTACCTGTG+AGG | + | chr7_2:53541853-53541872 | Msa1062530:CDS | 50.0% | |
| AGTACTTTACCTGTGAGGGC+TGG | + | chr7_2:53541858-53541877 | Msa1062530:CDS | 50.0% | |
| TGAGGGCTTACCATCTGAAG+AGG | + | chr7_2:53542293-53542312 | Msa1062530:CDS | 50.0% | |
| GAGGGCTTACCATCTGAAGA+GGG | + | chr7_2:53542294-53542313 | Msa1062530:CDS | 50.0% | |
| GTGCTTACTTCCAAAGACGG+TGG | + | chr7_2:53542672-53542691 | Msa1062530:CDS | 50.0% | |
| GATCCCAAATCCCCTGTTTC+TGG | + | chr7_2:53542714-53542733 | Msa1062530:CDS | 50.0% | |
| CCTCCAGAAACAGGGGATTT+GGG | - | chr7_2:53542720-53542739 | None:intergenic | 50.0% | |
| TCCTCCAGAAACAGGGGATT+TGG | - | chr7_2:53542721-53542740 | None:intergenic | 50.0% | |
| GGTCCCTCTGAATGACATTG+AGG | + | chr7_2:53542836-53542855 | Msa1062530:CDS | 50.0% | |
| !! | TGTACCTATGGTGATGGTGC+AGG | + | chr7_2:53542949-53542968 | Msa1062530:intron | 50.0% |
| !! | GTACCTATGGTGATGGTGCA+GGG | + | chr7_2:53542950-53542969 | Msa1062530:intron | 50.0% |
| GGGGACTATTGCAAGACTAG+TGG | + | chr7_2:53541652-53541671 | Msa1062530:CDS | 50.0% | |
| ACTCAAGCCAAGGAACTCCA+TGG | + | chr7_2:53541787-53541806 | Msa1062530:CDS | 50.0% | |
| AAGCCAAGGAACTCCATGGA+AGG | + | chr7_2:53541791-53541810 | Msa1062530:CDS | 50.0% | |
| CTACCTTCCATGGAGTTCCT+TGG | - | chr7_2:53541797-53541816 | None:intergenic | 50.0% | |
| CCTCGTACAACTACCTTCCA+TGG | - | chr7_2:53541807-53541826 | None:intergenic | 50.0% | |
| CCATGGAAGGTAGTTGTACG+AGG | + | chr7_2:53541804-53541823 | Msa1062530:CDS | 50.0% | |
| GGTGCAGTACTTTACCTGTG+AGG | + | chr7_2:53541853-53541872 | Msa1062530:CDS | 50.0% | |
| AGTACTTTACCTGTGAGGGC+TGG | + | chr7_2:53541858-53541877 | Msa1062530:CDS | 50.0% | |
| TGAGGGCTTACCATCTGAAG+AGG | + | chr7_2:53542293-53542312 | Msa1062530:CDS | 50.0% | |
| GAGGGCTTACCATCTGAAGA+GGG | + | chr7_2:53542294-53542313 | Msa1062530:CDS | 50.0% | |
| GTGCTTACTTCCAAAGACGG+TGG | + | chr7_2:53542672-53542691 | Msa1062530:CDS | 50.0% | |
| GATCCCAAATCCCCTGTTTC+TGG | + | chr7_2:53542714-53542733 | Msa1062530:CDS | 50.0% | |
| CCTCCAGAAACAGGGGATTT+GGG | - | chr7_2:53542720-53542739 | None:intergenic | 50.0% | |
| TCCTCCAGAAACAGGGGATT+TGG | - | chr7_2:53542721-53542740 | None:intergenic | 50.0% | |
| GGTCCCTCTGAATGACATTG+AGG | + | chr7_2:53542836-53542855 | Msa1062530:CDS | 50.0% | |
| !! | TGTACCTATGGTGATGGTGC+AGG | + | chr7_2:53542949-53542968 | Msa1062530:intron | 50.0% |
| !! | GTACCTATGGTGATGGTGCA+GGG | + | chr7_2:53542950-53542969 | Msa1062530:intron | 50.0% |
| ACACTTCATCCAGCCCTCAC+AGG | - | chr7_2:53541870-53541889 | None:intergenic | 55.0% | |
| ! | AGGAGGAGGCATGCATTCTC+TGG | + | chr7_2:53542116-53542135 | Msa1062530:intron | 55.0% |
| CAGAGGAGTCTTCGAGAGCA+AGG | - | chr7_2:53542235-53542254 | None:intergenic | 55.0% | |
| TACTTCCAAAGACGGTGGCG+AGG | + | chr7_2:53542677-53542696 | Msa1062530:CDS | 55.0% | |
| !! | CCCAAATCCCCTGTTTCTGG+AGG | + | chr7_2:53542717-53542736 | Msa1062530:CDS | 55.0% |
| AGACCCTGCACCATCACCAT+AGG | - | chr7_2:53542956-53542975 | None:intergenic | 55.0% | |
| ACACTTCATCCAGCCCTCAC+AGG | - | chr7_2:53541870-53541889 | None:intergenic | 55.0% | |
| ! | AGGAGGAGGCATGCATTCTC+TGG | + | chr7_2:53542116-53542135 | Msa1062530:intron | 55.0% |
| CAGAGGAGTCTTCGAGAGCA+AGG | - | chr7_2:53542235-53542254 | None:intergenic | 55.0% | |
| TACTTCCAAAGACGGTGGCG+AGG | + | chr7_2:53542677-53542696 | Msa1062530:CDS | 55.0% | |
| !! | CCCAAATCCCCTGTTTCTGG+AGG | + | chr7_2:53542717-53542736 | Msa1062530:CDS | 55.0% |
| AGACCCTGCACCATCACCAT+AGG | - | chr7_2:53542956-53542975 | None:intergenic | 55.0% | |
| CAAGACCTCGCCACCGTCTT+TGG | - | chr7_2:53542685-53542704 | None:intergenic | 60.0% | |
| CAAGACCTCGCCACCGTCTT+TGG | - | chr7_2:53542685-53542704 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 53541536 | 53543144 | 53541536 | ID=Msa1062530;Name=Msa1062530 |
| chr7_2 | mRNA | 53541536 | 53543144 | 53541536 | ID=Msa1062530-mRNA-1;Parent=Msa1062530;Name=Msa1062530-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|1|1|3|0|444 |
| chr7_2 | exon | 53541536 | 53542018 | 53541536 | ID=Msa1062530-mRNA-1:exon:9743;Parent=Msa1062530-mRNA-1 |
| chr7_2 | exon | 53542210 | 53542887 | 53542210 | ID=Msa1062530-mRNA-1:exon:9744;Parent=Msa1062530-mRNA-1 |
| chr7_2 | exon | 53542971 | 53543144 | 53542971 | ID=Msa1062530-mRNA-1:exon:9745;Parent=Msa1062530-mRNA-1 |
| chr7_2 | CDS | 53541536 | 53542018 | 53541536 | ID=Msa1062530-mRNA-1:cds;Parent=Msa1062530-mRNA-1 |
| chr7_2 | CDS | 53542210 | 53542887 | 53542210 | ID=Msa1062530-mRNA-1:cds;Parent=Msa1062530-mRNA-1 |
| chr7_2 | CDS | 53542971 | 53543144 | 53542971 | ID=Msa1062530-mRNA-1:cds;Parent=Msa1062530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
