AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1147900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147900 MtrunA17_Chr7g0234781 100.000 75 0 0 58 132 3 77 2.14e-49 157
Msa1147900 MtrunA17_Chr8g0339111 97.333 75 2 0 58 132 3 77 4.31e-48 153
Msa1147900 MtrunA17_Chr4g0006811 90.385 52 5 0 81 132 5 56 9.10e-27 98.6
Msa1147900 MtrunA17_Chr8g0339121 88.462 52 6 0 81 132 5 56 5.77e-26 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147900 AT5G59240.1 96.000 75 3 0 58 132 3 77 3.90e-47 151
Msa1147900 AT5G20290.1 92.000 75 6 0 58 132 3 77 1.40e-37 127

Find 37 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTGAACAGGTATTTCT+AGG 0.251118 7_4:-27482674 Msa1147900:intron
AGCACTGTCGCTGCTGGAAC+TGG 0.368158 7_4:-27486197 Msa1147900:CDS
ACTACCCCATGAGAAATTTC+CGG 0.391871 7_4:+27481612 None:intergenic
CTAGACAGCTTAGTGTTGGC+TGG 0.421456 7_4:+27481703 None:intergenic
GTCAGAAGAATCCGTGTTAG+AGG 0.431422 7_4:-27481670 Msa1147900:CDS
ACAGCTTAGTGTTGGCTGGC+TGG 0.467973 7_4:+27481707 None:intergenic
AGTTCCAGCAGCGACAGTGC+TGG 0.473833 7_4:+27486199 None:intergenic
ATGCACAAGAGGCGTGCCAC+TGG 0.486837 7_4:-27482645 Msa1147900:CDS
GTTCCAGCAGCGACAGTGCT+GGG 0.498671 7_4:+27486200 None:intergenic
TGTCCCAGCACTGTCGCTGC+TGG 0.499858 7_4:-27486203 Msa1147900:CDS
TTTCTGAACAGGTATTTCTA+GGG 0.506113 7_4:-27482673 Msa1147900:intron
GCTGGAACTGGTTGCAGATG+TGG 0.509662 7_4:-27486185 Msa1147900:CDS
GTTGCTAGACAGCTTAGTGT+TGG 0.512620 7_4:+27481699 None:intergenic
TTAGAGGTGGCAATGTGAAA+TGG 0.513214 7_4:-27481654 Msa1147900:CDS
GAAATGGAGAGCTCTTAGAT+TGG 0.523645 7_4:-27481638 Msa1147900:CDS
ACAGTGCTGGGACAGCTACA+TGG 0.529269 7_4:+27486212 None:intergenic
GCGGCAAGAGGCACAAGTAC+AGG 0.530487 7_4:+27486157 None:intergenic
CTGGTGGCAAGAAGAAGAGC+TGG 0.534252 7_4:-27482626 Msa1147900:CDS
GCTCTTCTTCTTGCCACCAG+TGG 0.539638 7_4:+27482629 None:intergenic
TGGACACCGGAAATTTCTCA+TGG 0.540947 7_4:-27481618 Msa1147900:CDS
CACTCACAGTGTTCTCCACA+TGG 0.560508 7_4:+27486239 None:intergenic
AGTGGCACGCCTCTTGTGCA+TGG 0.560948 7_4:+27482647 None:intergenic
CTCATTTCAACTGCGGCAAG+AGG 0.575924 7_4:+27486145 None:intergenic
CACAAGAGGCGTGCCACTGG+TGG 0.589648 7_4:-27482642 Msa1147900:CDS
GGACACCGGAAATTTCTCAT+GGG 0.596057 7_4:-27481617 Msa1147900:CDS
TCACATTGCCACCTCTAACA+CGG 0.599964 7_4:+27481659 None:intergenic
CAGTGCTGGGACAGCTACAT+GGG 0.614509 7_4:+27486213 None:intergenic
ATACAGGTGTACAAATAGTG+AGG 0.628896 7_4:-27486291 None:intergenic
GGGTGGTATAGGTACGAGCT+TGG 0.629636 7_4:-27481733 Msa1147900:intron
AGAAGAATCCGTGTTAGAGG+TGG 0.633660 7_4:-27481667 Msa1147900:CDS
CTAGGGATTCCATGCACAAG+AGG 0.633798 7_4:-27482656 Msa1147900:CDS
TACAGGTGTACAAATAGTGA+GGG 0.637046 7_4:-27486290 None:intergenic
GACACCGGAAATTTCTCATG+GGG 0.646061 7_4:-27481616 Msa1147900:CDS
AGGTGTACAAATAGTGAGGG+TGG 0.669486 7_4:-27486287 None:intergenic
AATCACTCAACATGTCCATG+TGG 0.712109 7_4:-27486254 Msa1147900:CDS
AGAGCTCTTAGATTGGACAC+CGG 0.718310 7_4:-27481631 Msa1147900:CDS
TGAGTGACTCATTTCAACTG+CGG 0.725551 7_4:+27486138 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTTAATTAACTTTTT+TGG + chr7_4:27482263-27482282 None:intergenic 10.0%
!! AGATAAAAAGTAATAAAATT+TGG - chr7_4:27484289-27484308 Msa1147900:intron 10.0%
!!! AATTGAAAATAAGTCATTTT+TGG + chr7_4:27482312-27482331 None:intergenic 15.0%
!! TTAAAAGATCAAAATTAACA+AGG - chr7_4:27483090-27483109 Msa1147900:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr7_4:27484481-27484500 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr7_4:27484480-27484499 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + chr7_4:27484389-27484408 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr7_4:27484480-27484499 Msa1147900:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr7_4:27484481-27484500 Msa1147900:intron 15.0%
!!! CTTTTTAAAAAATATATGTG+AGG + chr7_4:27484737-27484756 None:intergenic 15.0%
!! TACAAAAACCATTTCATATA+TGG + chr7_4:27481799-27481818 None:intergenic 20.0%
!! AATAATTGAATAAGAATACG+TGG - chr7_4:27481985-27482004 Msa1147900:intron 20.0%
!! ATAATTGAATAAGAATACGT+GGG - chr7_4:27481986-27482005 Msa1147900:intron 20.0%
!!! TTTAATTAACTTTTTTGGAC+TGG + chr7_4:27482258-27482277 None:intergenic 20.0%
!!! AGAGAATCTGAATTTTATTT+TGG - chr7_4:27482406-27482425 Msa1147900:intron 20.0%
!! TCTCATATTTCATATTCATA+TGG - chr7_4:27482644-27482663 Msa1147900:CDS 20.0%
!! TATGATTGTAAAATTGTTGA+GGG + chr7_4:27482860-27482879 None:intergenic 20.0%
!! CAATACAAAGTTCATATAAA+TGG - chr7_4:27483247-27483266 Msa1147900:intron 20.0%
!!! ATTTTTTCCAATGGTTAATA+TGG + chr7_4:27483420-27483439 None:intergenic 20.0%
!!! CTTATGATGTTTTGTTTTAT+TGG + chr7_4:27483668-27483687 None:intergenic 20.0%
!! ATTTAAATAACCAACCATTT+AGG + chr7_4:27483820-27483839 None:intergenic 20.0%
!!! AAAATAGAGTTTTGACTTAT+TGG + chr7_4:27483854-27483873 None:intergenic 20.0%
!!! ATAAAGAAAAGTATTTCTGA+AGG - chr7_4:27483936-27483955 Msa1147900:intron 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG - chr7_4:27484324-27484343 Msa1147900:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG - chr7_4:27484418-27484437 Msa1147900:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG - chr7_4:27484419-27484438 Msa1147900:intron 20.0%
!!! TTATGCATGATTTTTTAGAA+GGG + chr7_4:27484555-27484574 None:intergenic 20.0%
!!! ATTATGCATGATTTTTTAGA+AGG + chr7_4:27484556-27484575 None:intergenic 20.0%
!!! TTCAACACTCATTTTTTAAT+TGG + chr7_4:27484685-27484704 None:intergenic 20.0%
!!! TTATGTATTTATTTCTGAAC+AGG - chr7_4:27485190-27485209 Msa1147900:intron 20.0%
!! TGGAATTATAATCTAATCAA+AGG + chr7_4:27486033-27486052 None:intergenic 20.0%
!!! ATTCCAATAGTAAATTTTGT+TGG - chr7_4:27486047-27486066 Msa1147900:intron 20.0%
!! TACGAACGTTTTATGTTTTT+TGG - chr7_4:27481838-27481857 Msa1147900:intron 25.0%
! ATTACTCAATGTTATGCTTA+TGG - chr7_4:27481945-27481964 Msa1147900:intron 25.0%
!!! GTGGGTTTTGTTTTTAATTT+TGG - chr7_4:27482004-27482023 Msa1147900:intron 25.0%
! TTTCAGTTATACCAAAACAA+TGG + chr7_4:27482050-27482069 None:intergenic 25.0%
!! TGGTGAAATAATTTTTCGTT+AGG - chr7_4:27482426-27482445 Msa1147900:intron 25.0%
!! ATGCATCATTTTCATATGTT+GGG + chr7_4:27482531-27482550 None:intergenic 25.0%
!! AATGCATCATTTTCATATGT+TGG + chr7_4:27482532-27482551 None:intergenic 25.0%
! ACTTATGATAGAACAAAAGA+AGG - chr7_4:27482559-27482578 Msa1147900:intron 25.0%
! ATTGATATAGTAACAAGTAC+AGG + chr7_4:27482715-27482734 None:intergenic 25.0%
!! TGAAGTAGTTTGTAATTGAT+GGG + chr7_4:27482820-27482839 None:intergenic 25.0%
!! ATGAAGTAGTTTGTAATTGA+TGG + chr7_4:27482821-27482840 None:intergenic 25.0%
! CAATTACAAACTACTTCATT+TGG - chr7_4:27482822-27482841 Msa1147900:intron 25.0%
! CTATGATTGTAAAATTGTTG+AGG + chr7_4:27482861-27482880 None:intergenic 25.0%
! TTTATCTCATGCAATTCAAA+AGG + chr7_4:27482894-27482913 None:intergenic 25.0%
! TTTGAATTGCATGAGATAAA+TGG - chr7_4:27482894-27482913 Msa1147900:intron 25.0%
! TACTTATGTCGTTAAATAGT+TGG - chr7_4:27482968-27482987 Msa1147900:intron 25.0%
! TACAAAGTTCATATAAATGG+AGG - chr7_4:27483250-27483269 Msa1147900:intron 25.0%
! ACAAAGTTCATATAAATGGA+GGG - chr7_4:27483251-27483270 Msa1147900:intron 25.0%
! AATTGATTACGTTTCTTTCA+TGG - chr7_4:27483283-27483302 Msa1147900:intron 25.0%
!!! TAATGATGCATTTTTTCCAA+TGG + chr7_4:27483429-27483448 None:intergenic 25.0%
!!! AGTTTTGAGAATTTAGCTAA+TGG + chr7_4:27483477-27483496 None:intergenic 25.0%
! TTACATCATTGGAACAAAAA+AGG - chr7_4:27483960-27483979 Msa1147900:intron 25.0%
! TACATCATTGGAACAAAAAA+GGG - chr7_4:27483961-27483980 Msa1147900:intron 25.0%
!!! ATTAACCCTTTTTAGAATTG+AGG + chr7_4:27484001-27484020 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + chr7_4:27484129-27484148 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + chr7_4:27484130-27484149 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG - chr7_4:27484452-27484471 Msa1147900:intron 25.0%
! AATATATGTGAGGAATGTTA+AGG + chr7_4:27484727-27484746 None:intergenic 25.0%
! AACATAAATAAAAAGACCTG+TGG - chr7_4:27484933-27484952 Msa1147900:intron 25.0%
! ACATAAATAAAAAGACCTGT+GGG - chr7_4:27484934-27484953 Msa1147900:intron 25.0%
! ATTCAAAATGAAAAACAAGC+AGG + chr7_4:27485314-27485333 None:intergenic 25.0%
! TGAATTTGTACAAACAGATT+AGG + chr7_4:27485700-27485719 None:intergenic 25.0%
! TAATCTGTTTGTACAAATTC+AGG - chr7_4:27485699-27485718 Msa1147900:intron 25.0%
!!! GTTTTCTGGCATATTATATA+TGG - chr7_4:27485811-27485830 Msa1147900:intron 25.0%
! GCAATGTTTGTATTAATACT+CGG + chr7_4:27485993-27486012 None:intergenic 25.0%
! CATCCAACAAAATTTACTAT+TGG + chr7_4:27486053-27486072 None:intergenic 25.0%
! AGCTTAGATAGTAATTAACT+GGG + chr7_4:27486108-27486127 None:intergenic 25.0%
! AAGCTTAGATAGTAATTAAC+TGG + chr7_4:27486109-27486128 None:intergenic 25.0%
!!! ATCTAAGCTTATGTTTTTGT+TGG - chr7_4:27486119-27486138 Msa1147900:intron 25.0%
!!! TCTAAGCTTATGTTTTTGTT+GGG - chr7_4:27486120-27486139 Msa1147900:intron 25.0%
AACCTCATCCATATATGAAA+TGG - chr7_4:27481788-27481807 Msa1147900:intron 30.0%
AACCATTTCATATATGGATG+AGG + chr7_4:27481793-27481812 None:intergenic 30.0%
TATACCATGGCATTATGAAA+TGG - chr7_4:27481885-27481904 Msa1147900:intron 30.0%
AAAACCATTTCATAATGCCA+TGG + chr7_4:27481892-27481911 None:intergenic 30.0%
TATAATAAGCCAAGTAACCA+TGG - chr7_4:27481921-27481940 Msa1147900:intron 30.0%
! ATATTGAGTGACCATTGTTT+TGG - chr7_4:27482036-27482055 Msa1147900:intron 30.0%
! TTACAGAAGAGTTAGAGTTT+TGG - chr7_4:27482138-27482157 Msa1147900:intron 30.0%
TATCTCGTACAATAGAGATT+AGG + chr7_4:27482221-27482240 None:intergenic 30.0%
!!! GTTTTGTTGTTTATTTGCAC+AGG + chr7_4:27482498-27482517 None:intergenic 30.0%
TAAGATCTCATCCAATAACT+TGG - chr7_4:27482597-27482616 Msa1147900:intron 30.0%
AAGATCTCATCCAATAACTT+GGG - chr7_4:27482598-27482617 Msa1147900:intron 30.0%
TTACAAACTACTTCATTTGG+TGG - chr7_4:27482825-27482844 Msa1147900:intron 30.0%
GCATGAGATAAATGGTTAAA+AGG - chr7_4:27482902-27482921 Msa1147900:intron 30.0%
TAAATGGTTAAAAGGATCTG+AGG - chr7_4:27482910-27482929 Msa1147900:intron 30.0%
AAATGGTTAAAAGGATCTGA+GGG - chr7_4:27482911-27482930 Msa1147900:intron 30.0%
TGTCATAGTTACATTGATAG+AGG + chr7_4:27483023-27483042 None:intergenic 30.0%
GATCAAAATTAACAAGGCAA+AGG - chr7_4:27483096-27483115 Msa1147900:intron 30.0%
ATCAAACAAACGAATCCATT+CGG - chr7_4:27483147-27483166 Msa1147900:intron 30.0%
ATTCATCTTTCTTGTTCCAT+AGG + chr7_4:27483198-27483217 None:intergenic 30.0%
!! CTTTGTATTGACTATTGAAC+TGG + chr7_4:27483237-27483256 None:intergenic 30.0%
TTCAATAACCATAGCCTAAA+TGG - chr7_4:27483803-27483822 Msa1147900:intron 30.0%
!!! ATAGAGTTTTGACTTATTGG+TGG + chr7_4:27483851-27483870 None:intergenic 30.0%
! TTTCTGAAGGATTACATCAT+TGG - chr7_4:27483949-27483968 Msa1147900:intron 30.0%
! ACACACCTCAATTCTAAAAA+GGG - chr7_4:27483993-27484012 Msa1147900:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr7_4:27484512-27484531 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr7_4:27484511-27484530 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG - chr7_4:27484192-27484211 Msa1147900:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG - chr7_4:27484451-27484470 Msa1147900:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr7_4:27484511-27484530 Msa1147900:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr7_4:27484512-27484531 Msa1147900:intron 30.0%
CCTAATCACATATATCAAAC+GGG + chr7_4:27485000-27485019 None:intergenic 30.0%
CCCTAATCACATATATCAAA+CGG + chr7_4:27485001-27485020 None:intergenic 30.0%
CCGTTTGATATATGTGATTA+GGG - chr7_4:27484998-27485017 Msa1147900:intron 30.0%
TTCATCTTCATCTCTGTTAT+TGG - chr7_4:27485120-27485139 Msa1147900:intron 30.0%
ATTTCTGAACAGGTATTTCT+AGG - chr7_4:27485200-27485219 Msa1147900:intron 30.0%
! TTTCTGAACAGGTATTTCTA+GGG - chr7_4:27485201-27485220 Msa1147900:intron 30.0%
GTTAATGTCATTCAGTATGA+AGG - chr7_4:27485403-27485422 Msa1147900:intron 30.0%
AAAGTCTTCCCAATATCTAT+AGG - chr7_4:27485918-27485937 Msa1147900:intron 30.0%
TCATCTTGCCTATAGATATT+GGG + chr7_4:27485929-27485948 None:intergenic 30.0%
ATCATCTTGCCTATAGATAT+TGG + chr7_4:27485930-27485949 None:intergenic 30.0%
!! CTAAGCTTATGTTTTTGTTG+GGG - chr7_4:27486121-27486140 Msa1147900:intron 30.0%
TCTAGAGAACTCTTATACCA+TGG - chr7_4:27481872-27481891 Msa1147900:intron 35.0%
CATAACATTGAGTAATGCCA+TGG + chr7_4:27481941-27481960 None:intergenic 35.0%
AACAGCTCATAGTGCAATAA+CGG - chr7_4:27482169-27482188 Msa1147900:intron 35.0%
ATCGTTTGATTAAGCTGAAG+TGG - chr7_4:27482351-27482370 Msa1147900:intron 35.0%
ATTTGCACAGGTAAGAAAGA+GGG + chr7_4:27482486-27482505 None:intergenic 35.0%
TATTTGCACAGGTAAGAAAG+AGG + chr7_4:27482487-27482506 None:intergenic 35.0%
! ATTCATATGGTGCTAGATCA+TGG - chr7_4:27482657-27482676 Msa1147900:CDS 35.0%
ATAGTAACAAGTACAGGAGA+AGG + chr7_4:27482709-27482728 None:intergenic 35.0%
GTTTGTAATTGATGGGAACA+AGG + chr7_4:27482813-27482832 None:intergenic 35.0%
!!! CGAGTTCTTTTGAGATTACT+TGG + chr7_4:27482941-27482960 None:intergenic 35.0%
CTATGACAGTAAAGCTTCAT+TGG - chr7_4:27483035-27483054 Msa1147900:intron 35.0%
GATGAAAACTATCATGAGCT+AGG + chr7_4:27483068-27483087 None:intergenic 35.0%
! CTTTGTTTGCAGTATCCAAA+TGG + chr7_4:27483125-27483144 None:intergenic 35.0%
TCAAACAAACGAATCCATTC+GGG - chr7_4:27483148-27483167 Msa1147900:intron 35.0%
CAAACCTATCTATCTACCTA+TGG - chr7_4:27483179-27483198 Msa1147900:intron 35.0%
TGTTCCATAGGTAGATAGAT+AGG + chr7_4:27483186-27483205 None:intergenic 35.0%
TTGTTAACAGATACGCAAGT+TGG - chr7_4:27483575-27483594 Msa1147900:intron 35.0%
ATAACCATAGCCTAAATGGT+TGG - chr7_4:27483807-27483826 Msa1147900:intron 35.0%
ATAACCAACCATTTAGGCTA+TGG + chr7_4:27483814-27483833 None:intergenic 35.0%
! CACACACCTCAATTCTAAAA+AGG - chr7_4:27483992-27484011 Msa1147900:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr7_4:27484496-27484515 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr7_4:27484496-27484515 Msa1147900:intron 35.0%
ACAAATTGGGCCTCAATATT+GGG + chr7_4:27484974-27484993 None:intergenic 35.0%
AACAAATTGGGCCTCAATAT+TGG + chr7_4:27484975-27484994 None:intergenic 35.0%
AATATTGAGGCCCAATTTGT+TGG - chr7_4:27484974-27484993 Msa1147900:intron 35.0%
CCCGTTTGATATATGTGATT+AGG - chr7_4:27484997-27485016 Msa1147900:intron 35.0%
AAGATGAATCATACCCATCT+TGG + chr7_4:27485108-27485127 None:intergenic 35.0%
AGGATCTGATGAGAGAAAAA+GGG + chr7_4:27485294-27485313 None:intergenic 35.0%
!! TTGCTTTTGTGTATGCTCTA+AGG - chr7_4:27485531-27485550 Msa1147900:intron 35.0%
! GGTGTTTTCAAATGCTATCT+TGG - chr7_4:27485552-27485571 Msa1147900:intron 35.0%
CAAATAAGCCAATTCCAAAC+AGG - chr7_4:27485672-27485691 Msa1147900:intron 35.0%
CTAATTCTCATTGTTCTCTC+TGG - chr7_4:27485753-27485772 Msa1147900:intron 35.0%
TGCCAGAAAACTAATTGAGA+GGG + chr7_4:27485802-27485821 None:intergenic 35.0%
ATGCCAGAAAACTAATTGAG+AGG + chr7_4:27485803-27485822 None:intergenic 35.0%
AATCACTCAACATGTCCATG+TGG - chr7_4:27481620-27481639 Msa1147900:CDS 40.0%
TGAGTGACTCATTTCAACTG+CGG + chr7_4:27481739-27481758 None:intergenic 40.0%
ATGAGTCACTCATGTTTGTG+TGG - chr7_4:27481747-27481766 Msa1147900:intron 40.0%
TGAGTAATGCCATGGTTACT+TGG + chr7_4:27481933-27481952 None:intergenic 40.0%
CAGCTTGTATTGTGTGGTAT+AGG + chr7_4:27482088-27482107 None:intergenic 40.0%
TTGCACTATGAGCTGTTGTA+GGG + chr7_4:27482166-27482185 None:intergenic 40.0%
ATTGCACTATGAGCTGTTGT+AGG + chr7_4:27482167-27482186 None:intergenic 40.0%
ATTGTACGAGATAGTTGCTG+TGG - chr7_4:27482228-27482247 Msa1147900:intron 40.0%
AACAAGTACAGGAGAAGGAA+AGG + chr7_4:27482704-27482723 None:intergenic 40.0%
TCATCAACCCTTGTATCTTC+TGG - chr7_4:27482767-27482786 Msa1147900:intron 40.0%
CTCTGATCCAGAAGATACAA+GGG + chr7_4:27482777-27482796 None:intergenic 40.0%
TCTCTGATCCAGAAGATACA+AGG + chr7_4:27482778-27482797 None:intergenic 40.0%
ATGTCGTTAAATAGTTGGCG+TGG - chr7_4:27482973-27482992 Msa1147900:intron 40.0%
ACAAGGCAAAGGAATCCATT+TGG - chr7_4:27483107-27483126 Msa1147900:intron 40.0%
GTGTGAGCCATATTAACCAT+TGG - chr7_4:27483410-27483429 Msa1147900:intron 40.0%
ATCAAACGGGCCAACAAATT+GGG + chr7_4:27484987-27485006 None:intergenic 40.0%
TATCAAACGGGCCAACAAAT+TGG + chr7_4:27484988-27485007 None:intergenic 40.0%
ATGAATCATACCCATCTTGG+CGG + chr7_4:27485105-27485124 None:intergenic 40.0%
CAGGATCTGATGAGAGAAAA+AGG + chr7_4:27485295-27485314 None:intergenic 40.0%
TTCAGTATGAAGGCTCTGTT+TGG - chr7_4:27485413-27485432 Msa1147900:intron 40.0%
GCCAGAAAACTAATTGAGAG+GGG + chr7_4:27485801-27485820 None:intergenic 40.0%
!! AGCTTATGTTTTTGTTGGGG+TGG - chr7_4:27486124-27486143 Msa1147900:intron 40.0%
!! TGTTTTTGTTGGGGTGGTAT+AGG - chr7_4:27486130-27486149 Msa1147900:intron 40.0%
TTAGAGGTGGCAATGTGAAA+TGG - chr7_4:27486220-27486239 Msa1147900:CDS 40.0%
GAAATGGAGAGCTCTTAGAT+TGG - chr7_4:27486236-27486255 Msa1147900:CDS 40.0%
ACTACCCCATGAGAAATTTC+CGG + chr7_4:27486265-27486284 None:intergenic 40.0%
ACCACACAATACAAGCTGCA+TGG - chr7_4:27482090-27482109 Msa1147900:intron 45.0%
CCACACAATACAAGCTGCAT+GGG - chr7_4:27482091-27482110 Msa1147900:intron 45.0%
AGCTCATAGTGCAATAACGG+TGG - chr7_4:27482172-27482191 Msa1147900:intron 45.0%
ATCCAATAACTTGGGCTGCA+AGG - chr7_4:27482606-27482625 Msa1147900:intron 45.0%
TCCAATAACTTGGGCTGCAA+GGG - chr7_4:27482607-27482626 Msa1147900:intron 45.0%
! TCATGGCCTTACAAGCCTTA+AGG - chr7_4:27483300-27483319 Msa1147900:intron 45.0%
! AGGTAGCCTTAAGGCTTGTA+AGG + chr7_4:27483309-27483328 None:intergenic 45.0%
TGCTGCAAAAACTGATGTCG+AGG + chr7_4:27483329-27483348 None:intergenic 45.0%
TCAGTTGCACTTCCAGTAAC+TGG - chr7_4:27483368-27483387 Msa1147900:intron 45.0%
TGGCTCACACTCATGTTCTT+CGG + chr7_4:27483400-27483419 None:intergenic 45.0%
! GATGATGAGACAGTGTTGGA+AGG + chr7_4:27483524-27483543 None:intergenic 45.0%
CAACACTGTCTCATCATCAC+CGG - chr7_4:27483526-27483545 Msa1147900:intron 45.0%
GTCTGCATAGCCCAATATTG+AGG - chr7_4:27484961-27484980 Msa1147900:intron 45.0%
! ATTAGGCGCCTGTTTGGAAT+TGG + chr7_4:27485683-27485702 None:intergenic 45.0%
AAACAGATTAGGCGCCTGTT+TGG + chr7_4:27485689-27485708 None:intergenic 45.0%
!!! GCCCCTCTCAATTAGTTTTC+TGG - chr7_4:27485797-27485816 Msa1147900:intron 45.0%
GTTGCTAGACAGCTTAGTGT+TGG + chr7_4:27486178-27486197 None:intergenic 45.0%
GTCAGAAGAATCCGTGTTAG+AGG - chr7_4:27486204-27486223 Msa1147900:CDS 45.0%
AGAAGAATCCGTGTTAGAGG+TGG - chr7_4:27486207-27486226 Msa1147900:CDS 45.0%
TCACATTGCCACCTCTAACA+CGG + chr7_4:27486218-27486237 None:intergenic 45.0%
AGAGCTCTTAGATTGGACAC+CGG - chr7_4:27486243-27486262 Msa1147900:CDS 45.0%
TGGACACCGGAAATTTCTCA+TGG - chr7_4:27486256-27486275 Msa1147900:CDS 45.0%
GGACACCGGAAATTTCTCAT+GGG - chr7_4:27486257-27486276 Msa1147900:CDS 45.0%
GACACCGGAAATTTCTCATG+GGG - chr7_4:27486258-27486277 Msa1147900:CDS 45.0%
!!! ATTTTTTTATATTATATGAA+TGG + chr7_4:27483698-27483717 None:intergenic 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG + chr7_4:27484096-27484115 None:intergenic 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG + chr7_4:27484097-27484116 None:intergenic 5.0%
CACTCACAGTGTTCTCCACA+TGG + chr7_4:27481638-27481657 None:intergenic 50.0%
CTCATTTCAACTGCGGCAAG+AGG + chr7_4:27481732-27481751 None:intergenic 50.0%
CCCATGCAGCTTGTATTGTG+TGG + chr7_4:27482094-27482113 None:intergenic 50.0%
CACAATACAAGCTGCATGGG+TGG - chr7_4:27482094-27482113 Msa1147900:intron 50.0%
AATACAAGCTGCATGGGTGG+AGG - chr7_4:27482097-27482116 Msa1147900:intron 50.0%
ATACAAGCTGCATGGGTGGA+GGG - chr7_4:27482098-27482117 Msa1147900:intron 50.0%
CACAGGTAAGAAAGAGGGCA+AGG + chr7_4:27482481-27482500 None:intergenic 50.0%
TCCCTTGCAGCCCAAGTTAT+TGG + chr7_4:27482611-27482630 None:intergenic 50.0%
! GGTTTGAAGTCGTACCCGAA+TGG + chr7_4:27483165-27483184 None:intergenic 50.0%
! CTGATGTCGAGGTAGCCTTA+AGG + chr7_4:27483318-27483337 None:intergenic 50.0%
CACACTCATGTTCTTCGGGA+AGG + chr7_4:27483395-27483414 None:intergenic 50.0%
GGCTCACACTCATGTTCTTC+GGG + chr7_4:27483399-27483418 None:intergenic 50.0%
! CGGTGATGATGAGACAGTGT+TGG + chr7_4:27483528-27483547 None:intergenic 50.0%
!!! TGCCATTTTTCGCCTCTAGC+CGG + chr7_4:27483548-27483567 None:intergenic 50.0%
ACACAGAAGCAGCAGAGAGA+GGG - chr7_4:27485047-27485066 Msa1147900:intron 50.0%
CTAGGGATTCCATGCACAAG+AGG - chr7_4:27485218-27485237 Msa1147900:intron 50.0%
!! CTAGACAGCTTAGTGTTGGC+TGG + chr7_4:27486174-27486193 None:intergenic 50.0%
! CAGTGCTGGGACAGCTACAT+GGG + chr7_4:27481664-27481683 None:intergenic 55.0%
! ACAGTGCTGGGACAGCTACA+TGG + chr7_4:27481665-27481684 None:intergenic 55.0%
GCTGGAACTGGTTGCAGATG+TGG - chr7_4:27481689-27481708 Msa1147900:CDS 55.0%
CTTCGGGAAGGTCCAGTTAC+TGG + chr7_4:27483383-27483402 None:intergenic 55.0%
! GTCTCATCATCACCGGCTAG+AGG - chr7_4:27483533-27483552 Msa1147900:intron 55.0%
! CACCGGCTAGAGGCGAAAAA+TGG - chr7_4:27483543-27483562 Msa1147900:intron 55.0%
GCTATGCAGACAAAGCCCAC+AGG + chr7_4:27484952-27484971 None:intergenic 55.0%
CACACAGAAGCAGCAGAGAG+AGG - chr7_4:27485046-27485065 Msa1147900:intron 55.0%
CAGAGAGAGGGAGAGGAAGA+GGG - chr7_4:27485059-27485078 Msa1147900:intron 55.0%
AGAGCAAGCTCCGCCAAGAT+GGG - chr7_4:27485092-27485111 Msa1147900:intron 55.0%
GCTCTTCTTCTTGCCACCAG+TGG + chr7_4:27485248-27485267 None:intergenic 55.0%
CTGGTGGCAAGAAGAAGAGC+TGG - chr7_4:27485248-27485267 Msa1147900:intron 55.0%
GGGTGGTATAGGTACGAGCT+TGG - chr7_4:27486141-27486160 Msa1147900:CDS 55.0%
!! ACAGCTTAGTGTTGGCTGGC+TGG + chr7_4:27486170-27486189 None:intergenic 55.0%
GTTCCAGCAGCGACAGTGCT+GGG + chr7_4:27481677-27481696 None:intergenic 60.0%
AGTTCCAGCAGCGACAGTGC+TGG + chr7_4:27481678-27481697 None:intergenic 60.0%
AGCACTGTCGCTGCTGGAAC+TGG - chr7_4:27481677-27481696 Msa1147900:CDS 60.0%
! GCGGCAAGAGGCACAAGTAC+AGG + chr7_4:27481720-27481739 None:intergenic 60.0%
GAAGCAGCAGAGAGAGGGAG+AGG - chr7_4:27485052-27485071 Msa1147900:intron 60.0%
GCAGAGAGAGGGAGAGGAAG+AGG - chr7_4:27485058-27485077 Msa1147900:intron 60.0%
AGAGGGAGAGGAAGAGGGTG+AGG - chr7_4:27485064-27485083 Msa1147900:intron 60.0%
GAGAGCAAGCTCCGCCAAGA+TGG - chr7_4:27485091-27485110 Msa1147900:intron 60.0%
AGTGGCACGCCTCTTGTGCA+TGG + chr7_4:27485230-27485249 None:intergenic 60.0%
! ATGCACAAGAGGCGTGCCAC+TGG - chr7_4:27485229-27485248 Msa1147900:intron 60.0%
TGTCCCAGCACTGTCGCTGC+TGG - chr7_4:27481671-27481690 Msa1147900:CDS 65.0%
! CACAAGAGGCGTGCCACTGG+TGG - chr7_4:27485232-27485251 Msa1147900:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 27481591 27486305 27481591 ID=Msa1147900;Name=Msa1147900
chr7_4 mRNA 27481591 27486305 27481591 ID=Msa1147900-mRNA-1;Parent=Msa1147900;Name=Msa1147900-mRNA-1;_AED=0.09;_eAED=0.48;_QI=0|0|0|1|0.5|0.66|3|0|132
chr7_4 exon 27486137 27486305 27486137 ID=Msa1147900-mRNA-1:exon:6734;Parent=Msa1147900-mRNA-1
chr7_4 exon 27482612 27482684 27482612 ID=Msa1147900-mRNA-1:exon:6733;Parent=Msa1147900-mRNA-1
chr7_4 exon 27481591 27481744 27481591 ID=Msa1147900-mRNA-1:exon:6732;Parent=Msa1147900-mRNA-1
chr7_4 CDS 27486137 27486305 27486137 ID=Msa1147900-mRNA-1:cds;Parent=Msa1147900-mRNA-1
chr7_4 CDS 27482612 27482684 27482612 ID=Msa1147900-mRNA-1:cds;Parent=Msa1147900-mRNA-1
chr7_4 CDS 27481591 27481744 27481591 ID=Msa1147900-mRNA-1:cds;Parent=Msa1147900-mRNA-1
Gene Sequence

>Msa1147900

GTACAAATAGTGAGGGTGGTGCAAATATCAATCACTCAACATGTCCATGTGGAGAACACTGTGAGTGTAACCCATGTAGCTGTCCCAGCACTGTCGCTGCTGGAACTGGTTGCAGATGTGGCACAACCTGTACTTGTGCCTCTTGCCGCAGTTGAAATGAGTCACTCATGTATTTCTAGGGATTCCATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGAGCTGGAGAAAGAAGCGAAAGTACGAGCTTGGTCGCCAGCCAGCCAACACTAAGCTGTCTAGCAACAAGACAGTCAGAAGAATCCGTGTTAGAGGTGGCAATGTGAAATGGAGAGCTCTTAGATTGGACACCGGAAATTTCTCATGGGGTAGTGAAGCAGTGACTCGCAAGACT

Protein sequence

>Msa1147900

VQIVRVVQISITQHVHVENTVSVTHVAVPALSLLELVADVAQPVLVPLAAVEMSHSCISRDSMHKRRATGGKKKSWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKT