AlfalfaGEDB | Msa1063150

M. sativa cultivar zhongmu-4 / Msa1063150

KEGG: -
GO: -
PFAM: PF04884.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1063150	XP_003623296.1	88.844	493	20	2	125	611	28	491	0.0	872

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1063150	sp\|B6IDH3\|RUS5_ARATH	61.653	472	143	4	145	607	61	503	0.0	538

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1063150	G7KS93	88.844	493	20	2	125	611	28	491	0.0	872

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0657820	Msa1063150	0.804697	1.907552e-49	-8.615850e-47
Msa1063150	Msa1067710	0.803874	2.830560e-49	-8.615850e-47
Msa1063150	Msa1152250	0.947853	2.989962e-106	-8.615850e-47
Msa1063150	Msa1395640	0.801906	7.217182e-49	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1063150	MtrunA17_Chr7g0242281	88.844	493	20	2	125	611	28	491	0.0	872
Msa1063150	MtrunA17_Chr5g0419261	27.407	405	251	10	197	596	60	426	3.65e-35	138
Msa1063150	MtrunA17_Chr5g0407831	27.887	459	270	15	166	596	140	565	1.52e-34	138
Msa1063150	MtrunA17_Chr7g0261271	28.986	276	175	4	151	426	15	269	4.50e-28	117
Msa1063150	MtrunA17_Chr4g0076831	26.667	420	252	12	184	591	99	474	2.92e-27	115
Msa1063150	MtrunA17_Chr4g0039601	27.791	421	246	14	184	591	87	462	4.97e-27	115
Msa1063150	MtrunA17_Chr5g0437141	51.485	101	38	2	15	104	129	229	5.60e-23	98.2
Msa1063150	MtrunA17_Chr5g0415531	48.624	109	35	4	5	104	136	232	5.83e-19	86.7
Msa1063150	MtrunA17_Chr7g0237291	25.506	247	163	6	198	436	111	344	3.19e-17	85.1
Msa1063150	MtrunA17_Chr2g0318621	62.000	50	19	0	1	50	1	50	3.01e-14	67.4

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1063150	AT5G01510.1	61.653	472	143	4	145	607	61	503	0.0	538
Msa1063150	AT3G45890.1	27.749	382	240	9	186	557	182	537	5.58e-34	137
Msa1063150	AT1G13770.4	27.660	235	163	3	197	430	52	280	6.12e-27	112
Msa1063150	AT5G49820.1	30.935	278	171	5	184	460	94	351	7.03e-27	115
Msa1063150	AT1G13770.3	27.660	235	163	3	197	430	52	280	1.61e-26	112
Msa1063150	AT1G13770.1	28.139	231	159	3	197	426	52	276	2.58e-26	112
Msa1063150	AT2G31190.1	27.526	287	185	6	151	436	33	297	6.18e-24	105
Msa1063150	AT2G31190.2	27.273	286	187	5	151	436	32	296	6.76e-24	105
Msa1063150	AT2G23470.1	28.700	223	152	2	143	365	64	279	2.48e-22	101
Msa1063150	AT1G13770.2	28.272	191	130	3	237	426	5	189	6.44e-20	92.0

Showing 1 to 10 of 10 entries

Previous1Next

Find 136 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGAAAGATGCTGAA+TGG	0.461318	7_2:-54691408	Msa1063150:CDS
AAAATATCCGGGATATAACT+GGG	0.594359	7_2:+54693825	None:intergenic
AAAGTTGAAAGATGCTGAAT+GGG	0.463223	7_2:-54691407	Msa1063150:CDS
AAATGAAGAGCAGTTTCAAT+TGG	0.438692	7_2:-54697981	Msa1063150:CDS
AAATGAGAAATATATTCTTG+TGG	0.641580	7_2:-54691897	Msa1063150:CDS
AACATAGTGAAACTAGCAAA+GGG	0.538317	7_2:-54697922	Msa1063150:CDS
AAGGACGGCATTGGAGCTGT+CGG	0.537285	7_2:-54694135	Msa1063150:CDS
AAGGTTATCAAGGGTGATAT+TGG	0.471832	7_2:-54696666	Msa1063150:CDS
AATATCTCAGGAAGAAGTTT+GGG	0.394078	7_2:-54692736	Msa1063150:intron
AATTTCAGTAAATCTGGGAG+AGG	0.591324	7_2:-54693155	Msa1063150:CDS

Showing 1 to 10 of 136 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAAGAGCAGTTTCAAT+TGG	-	chr7_2:54691183-54691202	Msa1063150:three_prime_UTR	30.0%
AACATAGTGAAACTAGCAAA+GGG	-	chr7_2:54691242-54691261	Msa1063150:three_prime_UTR	30.0%
AGGGTTAAATGACAAACATA+TGG	-	chr7_2:54691415-54691434	Msa1063150:CDS	30.0%
GACCCCAATACATTAAAAAT+AGG	+	chr7_2:54691593-54691612	None:intergenic	30.0%
TATTGGGGTCTAATAACTAT+AGG	-	chr7_2:54691603-54691622	Msa1063150:intron	30.0%
TTTCAAATATCAACGGTGTA+AGG	-	chr7_2:54691633-54691652	Msa1063150:intron	30.0%
TCACTCAAGAAATGCATTTA+TGG	+	chr7_2:54691725-54691744	None:intergenic	30.0%
TTATGGATAGACTCAATTGT+TGG	+	chr7_2:54691780-54691799	None:intergenic	30.0%
ATCGTTTCCAAAAACTAACA+TGG	-	chr7_2:54691889-54691908	Msa1063150:CDS	30.0%
TCGTTTCCAAAAACTAACAT+GGG	-	chr7_2:54691890-54691909	Msa1063150:CDS	30.0%

Showing 1 to 10 of 442 entries

Previous1 2 3 4 5…45Next

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	54690959	54698227	54690959	ID=Msa1063150;Name=Msa1063150
chr7_2	mRNA	54690959	54698227	54690959	ID=Msa1063150-mRNA-1;Parent=Msa1063150;Name=Msa1063150-mRNA-1;_AED=0.23;_eAED=0.26;_QI=0\|0.85\|0.8\|0.93\|1\|1\|15\|383\|612
chr7_2	exon	54690959	54691572	54690959	ID=Msa1063150-mRNA-1:exon:10128;Parent=Msa1063150-mRNA-1
chr7_2	exon	54691853	54691945	54691853	ID=Msa1063150-mRNA-1:exon:10127;Parent=Msa1063150-mRNA-1
chr7_2	exon	54692059	54692325	54692059	ID=Msa1063150-mRNA-1:exon:10126;Parent=Msa1063150-mRNA-1
chr7_2	exon	54692476	54692589	54692476	ID=Msa1063150-mRNA-1:exon:10125;Parent=Msa1063150-mRNA-1
chr7_2	exon	54692689	54692748	54692689	ID=Msa1063150-mRNA-1:exon:10124;Parent=Msa1063150-mRNA-1
chr7_2	exon	54693144	54693233	54693144	ID=Msa1063150-mRNA-1:exon:10123;Parent=Msa1063150-mRNA-1
chr7_2	exon	54693792	54693864	54693792	ID=Msa1063150-mRNA-1:exon:10122;Parent=Msa1063150-mRNA-1
chr7_2	exon	54693954	54694032	54693954	ID=Msa1063150-mRNA-1:exon:10121;Parent=Msa1063150-mRNA-1
chr7_2	exon	54694121	54694167	54694121	ID=Msa1063150-mRNA-1:exon:10120;Parent=Msa1063150-mRNA-1
chr7_2	exon	54694316	54694374	54694316	ID=Msa1063150-mRNA-1:exon:10119;Parent=Msa1063150-mRNA-1
chr7_2	exon	54694985	54695085	54694985	ID=Msa1063150-mRNA-1:exon:10118;Parent=Msa1063150-mRNA-1
chr7_2	exon	54695480	54695634	54695480	ID=Msa1063150-mRNA-1:exon:10117;Parent=Msa1063150-mRNA-1
chr7_2	exon	54696635	54696694	54696635	ID=Msa1063150-mRNA-1:exon:10116;Parent=Msa1063150-mRNA-1
chr7_2	exon	54696990	54697057	54696990	ID=Msa1063150-mRNA-1:exon:10115;Parent=Msa1063150-mRNA-1
chr7_2	exon	54697886	54698227	54697886	ID=Msa1063150-mRNA-1:exon:10114;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54697886	54698227	54697886	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54696990	54697057	54696990	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54696635	54696694	54696635	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54695480	54695634	54695480	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54694985	54695085	54694985	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54694316	54694374	54694316	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54694121	54694167	54694121	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54693954	54694032	54693954	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54693792	54693864	54693792	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54693144	54693233	54693144	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54692689	54692748	54692689	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54692476	54692589	54692476	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54692059	54692325	54692059	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54691853	54691945	54691853	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	CDS	54691342	54691572	54691342	ID=Msa1063150-mRNA-1:cds;Parent=Msa1063150-mRNA-1
chr7_2	three_prime_UTR	54690959	54691341	54690959	ID=Msa1063150-mRNA-1:three_prime_utr;Parent=Msa1063150-mRNA-1

Gene Sequence

>Msa1063150

ATGACTTCCTCTGATGAAGTAGTAACATACTCTCTTCCTTTGGGAGACCATGTCAAACAAACTTCAACTCAGGAGCCTTTCGGTAGAGCCATGGTGGCGACAAACTCTAGCTTGTCAAACTTACGTGCAAATGTTATTCACAACATGCAAGTTTTACAGTCAGTTCCTACTAAGGCCCAACAAGCTGGGGAGTTTTTAAGCGAATCATGGGCTAACATGACTCAAAATGAAGAGCAGTTTCAATTGGTGGTCCCAAAAAAATCAAAGAACATATTAAAACAGCAACATAGTGAAACTAGCAAAGGGTTAAGGTTTCCAATCGCTCGTCTCATTAGTCCTTTAAAGTTGAAGAAAGTTAAGCCTCATGGTTTTCAAATTCTATGTTCGGATAATGATGCTGTTAATGAAGGAGGTGAAAGGTTATCAAGGGTGATATTGGTGGAAAGATATAGCAATGGTACTGCTAAGAGATACGTAATTGGTGATGATTCGCAATTGCAAACCATTCTAGTTGAGGAGGATAGGTCTCTGCAAAACAGGTTTGGGGTTTTGCATTCTCCTGATAAAAGACTATCATGGCTTCCAGATAGGATTAAAGATTTTATTCTACCTGCAGGATTTCCCGGATCGGTCTCAGATGATTATTTGCAATACATGTTACTACAGTTCCCTACCAATGTGACTGGATGGATATGTCACACCATAGTCACTTCAAGTCTCCTAAAGGCTGTTGGTGTTGGTTCTTTCTCTGGAACCACAGCAGCTGCTTCTGCTGCTGCCATCAGATGGGTCTCAAAGGACGGCATTGGAGCTGTCGGGCGCTTATTCATTGGTGGGCGATTTGGAAATCTTTTTGACGATGATCCAAAACAATGGAGAATGTATGCAGACTTCATTGGCAGTGCTGGAAGCATTTTTGATCTGACAACCCAGTTATATCCCGGATATTTTCTTCCTTTGGCATCTCTTGGAAATCTTACTAAGGCTATAGCAAGAGGACTAAAAGATCCTTCTTCTAGAGTGATTCAAAGCCACTTTGCAATTTCAGTAAATCTGGGAGAGGTAGCAGCAAAGGAAGAAGTTTGGGAAGTTGTAGCTCAATTGGTTGGTCTTGGTTTGGGCATATTGATACTGGATACACCTGGCCTTGTAAAATCATATACTGTACTTTCATCAACTTGGTTGATTGTACGGCTTCTTCATCTTTGGCTACGCTACGAATCACTTTCAGTTCTCCAGTTTAACACGATAAATCTTAAGCGTGCTCGCATACTGGTAAAATCACATGTTTTACATTCCACTGTTCCAGGTTACATTCAGATAAATACAGTAGTTTTCTTTAGAGTTATTACTCTTCAAGGTAGTTTTTTCAAGTTTCCGAATGGAATTATTTCAGGATGCTTCAATTGCAACAAGGAAGAGAATATATTAGTGTGGTCACAGTTCATGAAGCCAATAATAATTTTCGGTTCACCCTTAGACAAGATGGATGGCATGGAGAGATCTCATTTTATGGTAGAGGCTCTTCTAAAGTTATATGCAAATGAGAAATATATTCTTGTGGTAAATCAGCAACTAGATGATTTGAAGTTTTATGTTTCTTTCAAGGTTGGAGCTACAAGTGTCTCGGTATTGCGAAGCATATGGCAGACATTCTGGCTTAGTGAGAATTGGGAGAGCAAGGGTAATGTTTGTGATCAACTTGCCAGTAGCCTAATGGAATTGGAAAATAGGTTTGATGATTTCATTCAAAAGTTGAAAGATGCTGAATGGGATACTCAACAATTAAATTTGAAGGTTCCCAAAGAAATTTCAATCGATGATATCAATACTTTTTAA

Protein sequence

>Msa1063150

MTSSDEVVTYSLPLGDHVKQTSTQEPFGRAMVATNSSLSNLRANVIHNMQVLQSVPTKAQQAGEFLSESWANMTQNEEQFQLVVPKKSKNILKQQHSETSKGLRFPIARLISPLKLKKVKPHGFQILCSDNDAVNEGGERLSRVILVERYSNGTAKRYVIGDDSQLQTILVEEDRSLQNRFGVLHSPDKRLSWLPDRIKDFILPAGFPGSVSDDYLQYMLLQFPTNVTGWICHTIVTSSLLKAVGVGSFSGTTAAASAAAIRWVSKDGIGAVGRLFIGGRFGNLFDDDPKQWRMYADFIGSAGSIFDLTTQLYPGYFLPLASLGNLTKAIARGLKDPSSRVIQSHFAISVNLGEVAAKEEVWEVVAQLVGLGLGILILDTPGLVKSYTVLSSTWLIVRLLHLWLRYESLSVLQFNTINLKRARILVKSHVLHSTVPGYIQINTVVFFRVITLQGSFFKFPNGIISGCFNCNKEENILVWSQFMKPIIIFGSPLDKMDGMERSHFMVEALLKLYANEKYILVVNQQLDDLKFYVSFKVGATSVSVLRSIWQTFWLSENWESKGNVCDQLASSLMELENRFDDFIQKLKDAEWDTQQLNLKVPKEISIDDINTF*