AlfalfaGEDB | Msa1067710

M. sativa cultivar zhongmu-4 / Msa1067710

KEGG: K15747
GO: GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010291 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0031967 GO:0031975 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:1901576
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067710	XP_003624118.3	98.428	636	10	0	1	636	1	636	0.0	1292

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067710	sp\|Q93VK5\|LUT5_ARATH	79.928	553	98	5	67	608	35	585	0.0	893

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067710	Q2HV82	98.428	636	10	0	1	636	1	636	0.0	1292

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1067710	0.824469	7.937499e-54	-8.615850e-47
Msa0000220	Msa1067710	0.836437	9.364665e-57	-8.615850e-47
Msa0000500	Msa1067710	0.852194	5.417236e-61	-8.615850e-47
Msa0001460	Msa1067710	0.835743	1.404900e-56	-8.615850e-47
Msa0005160	Msa1067710	0.826616	2.459840e-54	-8.615850e-47
Msa0005630	Msa1067710	0.807338	5.306613e-50	-8.615850e-47
Msa0005690	Msa1067710	0.893293	7.192342e-75	-8.615850e-47
Msa0006700	Msa1067710	0.827629	1.407466e-54	-8.615850e-47
Msa0007230	Msa1067710	0.810148	1.331105e-50	-8.615850e-47
Msa0007570	Msa1067710	0.809214	2.113835e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067710	MtrunA17_Chr0c19g0493771	98.428	636	10	0	1	636	54	689	0.0	1292
Msa1067710	MtrunA17_Chr7g0248991	99.133	346	3	0	187	532	22	367	0.0	714
Msa1067710	MtrunA17_Chr1g0179811	51.868	455	214	5	146	597	89	541	2.34e-161	473
Msa1067710	MtrunA17_Chr5g0396521	46.307	501	228	8	134	595	72	570	9.26e-147	437
Msa1067710	MtrunA17_Chr7g0249001	76.136	176	5	1	1	176	54	192	1.08e-83	261
Msa1067710	MtrunA17_Chr7g0248981	97.170	106	3	0	531	636	16	121	2.93e-67	215
Msa1067710	MtrunA17_Chr6g0457421	29.762	420	272	9	165	577	90	493	1.37e-46	172
Msa1067710	MtrunA17_Chr7g0215181	29.024	410	270	7	174	577	101	495	2.15e-45	169
Msa1067710	MtrunA17_Chr8g0351401	28.247	485	309	15	137	595	39	510	1.37e-43	164
Msa1067710	MtrunA17_Chr8g0351461	28.966	435	267	15	188	595	90	509	7.99e-42	158

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067710	AT1G31800.1	79.928	553	98	5	67	608	35	585	0.0	893
Msa1067710	AT3G53130.1	52.691	446	206	5	153	595	96	539	2.26e-164	481
Msa1067710	AT4G15110.1	44.343	548	253	12	90	597	45	580	4.50e-146	436
Msa1067710	AT5G23190.1	28.702	439	281	13	180	595	111	540	2.48e-42	161
Msa1067710	AT2G44890.1	26.562	448	298	11	169	595	71	508	2.85e-42	160
Msa1067710	AT3G14680.1	28.046	435	273	14	160	577	87	498	5.74e-42	159
Msa1067710	AT1G57750.1	29.291	437	271	15	179	596	80	497	2.01e-40	154
Msa1067710	AT2G45510.1	27.211	441	290	11	176	595	78	508	2.20e-40	155
Msa1067710	AT1G24540.1	27.391	460	287	17	165	595	79	520	3.42e-40	154
Msa1067710	AT2G26710.1	30.189	424	266	14	165	576	95	500	5.34e-40	154

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Find 140 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTCAGATGCAATGC+TGG	0.432133	7_2:-62511603	None:intergenic
AAACCTTCAGATGCAATGCT+GGG	0.600770	7_2:-62511602	None:intergenic
AAACTTATCTCTTCCTCAAT+TGG	0.362202	7_2:+62509807	Msa1067710:five_prime_UTR
AAAGAAGAGCTTGTCAAATT+TGG	0.108610	7_2:+62510373	Msa1067710:CDS
AAAGGGCTTATCCCAGCTGA+TGG	0.551393	7_2:+62511546	Msa1067710:CDS
AAAGGTCCAAGTTAAAACAG+CGG	0.725324	7_2:-62513831	None:intergenic
AAAGTGGTGGTTGGTTTGAG+TGG	0.545307	7_2:-62509960	None:intergenic
AAATGACACTGGTATAATTG+AGG	0.541790	7_2:+62512185	Msa1067710:CDS
AACAAGAAATGAAGAATACT+TGG	0.476283	7_2:-62513645	None:intergenic
AACCCTAATGAGACCAATCA+AGG	0.540469	7_2:+62514971	Msa1067710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTATCTCTTCCTCAAT+TGG	+	chr7_2:62509807-62509826	Msa1067710:five_prime_UTR	30.0%
ACAAAAGTAACATCCAATTG+AGG	-	chr7_2:62509823-62509842	None:intergenic	30.0%
TGTGTGTTATCTAACTTCTA+TGG	+	chr7_2:62509854-62509873	Msa1067710:exon	30.0%
TCCTTAAAAACAACACATAG+AGG	+	chr7_2:62510011-62510030	Msa1067710:CDS	30.0%
ATTGCATGTTCTTCTTCAAA+TGG	+	chr7_2:62510050-62510069	Msa1067710:CDS	30.0%
AAAGAAGAGCTTGTCAAATT+TGG	+	chr7_2:62510373-62510392	Msa1067710:CDS	30.0%
AAGAAGAGCTTGTCAAATTT+GGG	+	chr7_2:62510374-62510393	Msa1067710:CDS	30.0%
GAACTTTACATTACATATGG+TGG	+	chr7_2:62510506-62510525	Msa1067710:CDS	30.0%
TTATATGGGATAGTTGACTA+AGG	+	chr7_2:62510623-62510642	Msa1067710:intron	30.0%
CATAAGTTATGCAATTGTCA+TGG	-	chr7_2:62510675-62510694	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	62509691	62516662	62509691	ID=Msa1067710;Name=Msa1067710
chr7_2	mRNA	62509691	62516662	62509691	ID=Msa1067710-mRNA-1;Parent=Msa1067710;Name=Msa1067710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=182\|1\|1\|1\|1\|1\|15\|313\|636
chr7_2	exon	62509691	62510201	62509691	ID=Msa1067710-mRNA-1:exon:12662;Parent=Msa1067710-mRNA-1
chr7_2	exon	62510358	62510556	62510358	ID=Msa1067710-mRNA-1:exon:12663;Parent=Msa1067710-mRNA-1
chr7_2	exon	62511341	62511412	62511341	ID=Msa1067710-mRNA-1:exon:12664;Parent=Msa1067710-mRNA-1
chr7_2	exon	62511510	62511620	62511510	ID=Msa1067710-mRNA-1:exon:12665;Parent=Msa1067710-mRNA-1
chr7_2	exon	62512015	62512206	62512015	ID=Msa1067710-mRNA-1:exon:12666;Parent=Msa1067710-mRNA-1
chr7_2	exon	62512647	62512808	62512647	ID=Msa1067710-mRNA-1:exon:12667;Parent=Msa1067710-mRNA-1
chr7_2	exon	62513588	62513683	62513588	ID=Msa1067710-mRNA-1:exon:12668;Parent=Msa1067710-mRNA-1
chr7_2	exon	62513767	62513868	62513767	ID=Msa1067710-mRNA-1:exon:12669;Parent=Msa1067710-mRNA-1
chr7_2	exon	62514126	62514158	62514126	ID=Msa1067710-mRNA-1:exon:12670;Parent=Msa1067710-mRNA-1
chr7_2	exon	62514251	62514331	62514251	ID=Msa1067710-mRNA-1:exon:12671;Parent=Msa1067710-mRNA-1
chr7_2	exon	62514422	62514504	62514422	ID=Msa1067710-mRNA-1:exon:12672;Parent=Msa1067710-mRNA-1
chr7_2	exon	62514868	62514999	62514868	ID=Msa1067710-mRNA-1:exon:12673;Parent=Msa1067710-mRNA-1
chr7_2	exon	62515077	62515137	62515077	ID=Msa1067710-mRNA-1:exon:12674;Parent=Msa1067710-mRNA-1
chr7_2	exon	62515321	62515386	62515321	ID=Msa1067710-mRNA-1:exon:12675;Parent=Msa1067710-mRNA-1
chr7_2	exon	62516158	62516662	62516158	ID=Msa1067710-mRNA-1:exon:12676;Parent=Msa1067710-mRNA-1
chr7_2	five_prime_UTR	62509691	62509872	62509691	ID=Msa1067710-mRNA-1:five_prime_utr;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62509873	62510201	62509873	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62510358	62510556	62510358	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62511341	62511412	62511341	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62511510	62511620	62511510	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62512015	62512206	62512015	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62512647	62512808	62512647	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62513588	62513683	62513588	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62513767	62513868	62513767	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62514126	62514158	62514126	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62514251	62514331	62514251	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62514422	62514504	62514422	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62514868	62514999	62514868	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62515077	62515137	62515077	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62515321	62515386	62515321	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	CDS	62516158	62516349	62516158	ID=Msa1067710-mRNA-1:cds;Parent=Msa1067710-mRNA-1
chr7_2	three_prime_UTR	62516350	62516662	62516350	ID=Msa1067710-mRNA-1:three_prime_utr;Parent=Msa1067710-mRNA-1

Gene Sequence

>Msa1067710

ATGGCTTCTCATCTTACTCTTCTTCATGCTCCTCCTCCTCTTTCACCTCAAACAAAAACCTTTCATTCCAAATATATTACCATAAAACCACTCAAACCAACCACCACTTTTTCTTCATCTTGTTATCTCTTTCCATGTTCCTTAAAAACAACACATAGAGGATCATGTTATTCATTCATTGCATGTTCTTCTTCAAATGGTAGAAGTCCAAATGATTCAGTGGATGATGGTGTTGTTAAGAGTGTTGACCAGCTTCTTGAAGAGAAAAGACGAGCTGAATTGTCTGCTAAAATTGCTTCAGGTGAATTCACTGTCAAACAGGAATCTGGTCTACCTTCTATATTAAAGAAGAGCTTGTCAAATTTGGGAGTGTCCAATGAGATTTTGAAATTTTTATTTGGTTTGTATCCCAAAATTCCTGAGGCAAAAGGGTCAATTAGCGCTATTCGAAGTGAGGCCTTTTTCATTCCATTGTATGAACTTTACATTACATATGGTGGGATTTTCAGGCTGAATTTTGGACCAAAGTCCTTTCTGATAGTATCGGATCCGGCTATTGCAAAACACATATTGAAAGACAATTCAAAGGCTTATTCTAAGGGTATCTTGGCTGAGATCCTGGATTTTGTAATGGGGAAAGGGCTTATCCCAGCTGATGGAGAAATATGGCGAGTTAGACGGCGTACTATTGTCCCAGCATTGCATCTGAAGTTTGTAGCAGCTATGATCGGCCTTTTTGGACAAGCTACAGACAGGCTCTGCCAGAAGCTAGATACTGCTGCATCTGACGGAGAAGATGTTGAAATGGAGTCACTTTTCTCTCGGTTGACGTTGGACGTCATTGGGAAAGCAGTATTCAATTATGATTTTGATAGTTTATCAAATGACACTGGTATAATTGAGGCTGTTTATACCGTACTGAGAGAAGCAGAAGATCGAAGTGTTTCTCCAATTCCAGTCTGGGATCTCCCAATATGGAAAGACATATCCCCGCGTCAAAGGAAGGTTACTGCAGCTCTCAAACTTGTCAATGATACACTTAACAATCTCATAGCAATATGCAAGAGAATGGTGGATGAGGAAGAGCTACAGTTTCATGAAGAGTACATGAACGAACAAGATCCAAGTATTCTTCATTTCTTGTTGGCGTCAGGAGATGATGTGACAAGTAAGCAACTACGTGACGACTTAATGACAATGCTCATTGCTGGACATGAAACTTCAGCCGCTGTTTTAACTTGGACCTTTTATCTTCTTTCAAAGGAGCCTAGTGTCATGTCCAAGCTCCAAGCAGAGGTTGACTCTGTCCTTGGTGACCGATTTCCAACTATTGAAGACATGAAGAAACTTAAATATACAACTCGAGTGATCAATGAGTCACTGAGGCTTTATCCACAACCGCCTGTGTTGATTCGTCGCTCTATTGAGGATGATGTTCTTGGAGAGTATCCTATAAAAAGAGGAGAAGATATTTTTATATCCGTGTGGAACCTGCATCGCAGTCCAACACTGTGGAATGATGCTGATAAATTTGAACCTGAAAGATGGCCATTAGATGGACCTAACCCTAATGAGACCAATCAAGGCTTCAAATATCTTCCATTTGGCGGAGGGCCGCGAAAATGTATAGGGGATATGTTTGCTTCATACGAGGTTGTAGTAGCACTTGCAATGCTTGTTAGACGGTTCAACTTTCAAATGGCAGTTGGAGCGCCACCAGTTGTGATGACTACTGGAGCGACAATTCATACAACACAAGGGTTGAACATGACTGTAACACGCAGAATAAAACCTCCTATCGTTCCCTCATTACAGATGTCAACATTGGAAGTGGATCCATCCGTGAACATTTCTGATAAAACCGGGGAAATAGGTCAGAAGGACCAAGTTTATCAGGCTCAAAAGTCCTGA

Protein sequence

>Msa1067710

MASHLTLLHAPPPLSPQTKTFHSKYITIKPLKPTTTFSSSCYLFPCSLKTTHRGSCYSFIACSSSNGRSPNDSVDDGVVKSVDQLLEEKRRAELSAKIASGEFTVKQESGLPSILKKSLSNLGVSNEILKFLFGLYPKIPEAKGSISAIRSEAFFIPLYELYITYGGIFRLNFGPKSFLIVSDPAIAKHILKDNSKAYSKGILAEILDFVMGKGLIPADGEIWRVRRRTIVPALHLKFVAAMIGLFGQATDRLCQKLDTAASDGEDVEMESLFSRLTLDVIGKAVFNYDFDSLSNDTGIIEAVYTVLREAEDRSVSPIPVWDLPIWKDISPRQRKVTAALKLVNDTLNNLIAICKRMVDEEELQFHEEYMNEQDPSILHFLLASGDDVTSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVMSKLQAEVDSVLGDRFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSIEDDVLGEYPIKRGEDIFISVWNLHRSPTLWNDADKFEPERWPLDGPNPNETNQGFKYLPFGGGPRKCIGDMFASYEVVVALAMLVRRFNFQMAVGAPPVVMTTGATIHTTQGLNMTVTRRIKPPIVPSLQMSTLEVDPSVNISDKTGEIGQKDQVYQAQKS*