AlfalfaGEDB | Msa1064220

M. sativa cultivar zhongmu-4 / Msa1064220

KEGG: -
GO: -
PFAM: PF03000.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1064220	XP_024627019.1	98.529	612	9	0	1	612	29	640	0.0	1249

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1064220	sp\|Q9C9Z7\|Y3857_ARATH	62.645	605	202	11	21	611	22	616	0.0	720

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1064220	A0A396H025	98.529	612	9	0	1	612	29	640	0.0	1249

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0517250	Msa1064220	0.810820	9.532465e-51	-8.615850e-47
Msa0752780	Msa1064220	0.810123	1.347603e-50	-8.615850e-47
Msa1064220	Msa1111840	0.815018	1.145871e-51	-8.615850e-47
Msa1064220	Msa1349690	0.801184	1.014795e-48	-8.615850e-47
Msa1064220	Msa1393780	0.808845	2.535327e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1064220	MtrunA17_Chr7g0245201	98.529	612	9	0	1	612	29	640	0.0	1249
Msa1064220	MtrunA17_Chr4g0010091	51.123	579	242	11	25	581	26	585	0.0	549
Msa1064220	MtrunA17_Chr1g0195911	45.108	603	295	9	31	612	34	621	3.16e-169	496
Msa1064220	MtrunA17_Chr7g0268781	44.314	598	288	12	31	597	34	617	5.44e-163	480
Msa1064220	MtrunA17_Chr5g0401451	41.042	614	314	16	29	612	35	630	1.40e-141	425
Msa1064220	MtrunA17_Chr4g0053841	40.066	604	319	15	32	612	12	595	1.38e-134	406
Msa1064220	MtrunA17_Chr2g0303541	39.162	549	297	10	36	555	29	569	1.20e-120	372
Msa1064220	MtrunA17_Chr3g0108331	36.088	593	320	11	32	612	23	568	4.01e-115	355
Msa1064220	MtrunA17_Chr8g0374011	33.968	683	344	17	7	609	1	656	7.64e-113	352
Msa1064220	MtrunA17_Chr2g0285511	38.051	544	291	12	33	549	26	550	8.02e-113	350

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1064220	AT3G08570.1	62.645	605	202	11	21	611	22	616	0.0	720
Msa1064220	AT3G08660.1	60.438	594	190	13	24	608	25	582	0.0	672
Msa1064220	AT3G08660.3	59.140	558	183	13	60	608	1	522	0.0	610
Msa1064220	AT5G48800.1	48.731	591	262	10	29	602	37	603	0.0	531
Msa1064220	AT1G03010.2	45.098	612	295	12	31	612	7	607	1.23e-164	484
Msa1064220	AT1G03010.3	45.041	615	297	12	28	612	30	633	2.24e-164	484
Msa1064220	AT1G03010.1	45.098	612	295	12	31	612	34	634	5.16e-164	483
Msa1064220	AT3G08660.2	56.977	430	147	9	24	446	25	423	1.07e-158	462
Msa1064220	AT2G47860.1	42.444	622	312	10	13	609	24	624	1.27e-153	456
Msa1064220	AT2G47860.3	41.308	627	306	10	31	609	35	647	4.24e-148	443

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Find 200 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAGTAGGAAGTCTC+GGG	0.484110	7_2:+56730927	Msa1064220:CDS
AAAGACCATCATCAATGACA+CGG	0.669381	7_2:-56730247	None:intergenic
AAAGACTACATTACAAGATG+TGG	0.571710	7_2:+56731230	Msa1064220:three_prime_UTR
AAAGAGTGAAGATAAAACTA+GGG	0.515562	7_2:-56728240	None:intergenic
AAAGCAAGTAGGAAGTCTCG+GGG	0.706742	7_2:+56730928	Msa1064220:CDS
AAAGGACCAGAGGACAACTG+TGG	0.711669	7_2:+56729794	Msa1064220:CDS
AAAGTTGTGTATATCATATA+TGG	0.243635	7_2:+56728003	Msa1064220:five_prime_UTR
AAATATCTGTTCTTGAGATG+AGG	0.557190	7_2:-56729362	None:intergenic
AACTCATTTACACGTTGTGA+TGG	0.616822	7_2:-56731060	None:intergenic
AACTGTGTCCACGTCAAACA+AGG	0.559313	7_2:-56730015	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATCATCCAATAATGTGTA+CGG	-	chr7_2:56728109-56728128	None:intergenic	30.0%
GTATAATCATCCATAGCTAT+AGG	+	chr7_2:56728128-56728147	Msa1064220:five_prime_UTR	30.0%
TGAAGATAAAACTAGGGAAA+AGG	-	chr7_2:56728237-56728256	None:intergenic	30.0%
GAAAGAGTGAAGATAAAACT+AGG	-	chr7_2:56728244-56728263	None:intergenic	30.0%
GTGTAAGAGTTGCAAAATTT+AGG	-	chr7_2:56728355-56728374	None:intergenic	30.0%
TACTAGGTACTTCAGTAATA+AGG	+	chr7_2:56728375-56728394	Msa1064220:intron	30.0%
ACATTACAATTGTCGTTGAT+GGG	+	chr7_2:56728744-56728763	Msa1064220:CDS	30.0%
AATATGACTAATGCAAGGTT+AGG	-	chr7_2:56728808-56728827	None:intergenic	30.0%
TAGAAATGACAGAAGAATAC+CGG	+	chr7_2:56729331-56729350	Msa1064220:CDS	30.0%
AAATATCTGTTCTTGAGATG+AGG	-	chr7_2:56729365-56729384	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	56727985	56731457	56727985	ID=Msa1064220;Name=Msa1064220
chr7_2	mRNA	56727985	56731457	56727985	ID=Msa1064220-mRNA-1;Parent=Msa1064220;Name=Msa1064220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=313\|1\|1\|1\|1\|1\|4\|461\|612
chr7_2	exon	56727985	56728380	56727985	ID=Msa1064220-mRNA-1:exon:10708;Parent=Msa1064220-mRNA-1
chr7_2	exon	56728721	56728787	56728721	ID=Msa1064220-mRNA-1:exon:10709;Parent=Msa1064220-mRNA-1
chr7_2	exon	56729132	56730295	56729132	ID=Msa1064220-mRNA-1:exon:10710;Parent=Msa1064220-mRNA-1
chr7_2	exon	56730472	56731457	56730472	ID=Msa1064220-mRNA-1:exon:10711;Parent=Msa1064220-mRNA-1
chr7_2	five_prime_UTR	56727985	56728297	56727985	ID=Msa1064220-mRNA-1:five_prime_utr;Parent=Msa1064220-mRNA-1
chr7_2	CDS	56728298	56728380	56728298	ID=Msa1064220-mRNA-1:cds;Parent=Msa1064220-mRNA-1
chr7_2	CDS	56728721	56728787	56728721	ID=Msa1064220-mRNA-1:cds;Parent=Msa1064220-mRNA-1
chr7_2	CDS	56729132	56730295	56729132	ID=Msa1064220-mRNA-1:cds;Parent=Msa1064220-mRNA-1
chr7_2	CDS	56730472	56730996	56730472	ID=Msa1064220-mRNA-1:cds;Parent=Msa1064220-mRNA-1
chr7_2	three_prime_UTR	56730997	56731457	56730997	ID=Msa1064220-mRNA-1:three_prime_utr;Parent=Msa1064220-mRNA-1

Gene Sequence

>Msa1064220

ATGGTTTCTGAAAACTCACTCTCTTCTTCTAAGCACTCTTCTACTACCACTACTCCTAAATTTTGCAACTCTTACACTACTAGGATTTTTGCTGATGTTGCTGGTGACATTACAATTGTCGTTGATGGGGAGTCATTTCTGTTACATAAGTTTCCCTTGGTTACCCTAAGTGGGAAGATCCGGAAGATGGTTGCTGAAGCCAACAAGGGTTCCAGTGTTTCAAACTTGGAGCTTCCCAATTTTCCAGGAGGACACCAGACATTTGAACTTGCAATGAAGTTCTGTTATGGTATGAATTTCGAGATAACGACATTTAATGTTGCCCGACTACGTTGTGCAGCCGAGTACCTAGAAATGACAGAAGAATACCGGGATCAAAACCTCATCTCAAGAACAGATATTTATCTGAGTGAGATTGTCTTTCAAAATCTTCAGAGGTCAGTGGAAGTTCTATCTACCTGTGAGATGTTACCTCTAAATATAGTGGAGGAGATAGAAATCACAAAAGGATCTGTGGAAGCTATTGCAATGAATGCTTGCAAAGAGCAATTAGTTTCTGGTTTATCTAAATTACACTGTGATGGTGAATCTAAGGAAATAAAGGATGAGTGTGTGGCATGGTGGATTGAAGATCTCTCGATACTGCGTATCGATTTCTACCAGAGAGTTATATGTGCCATGGGAAGAATGGGGGTTAGATCAGACAACATTATTGCTTCACTAATGCATTATGCTCAAACATCACTGAAGGGTATTGGAAAGTGTCAATTATGGAATCAATCAAGGACAAATTCAAGTCCAACTGCTATAGAAAAGGACCAGAGGACAACTGTGGAAACCATTGTCAACCTAATGCCAACAGACAAAAGCTCTTCCATCATTCCCCTGACTTTCTTGTTTGGCATGTTAAAGATGGCTATCATGTTAGGTGCCACCATTCCATGTAGGCTTGAGCTTGAAAGAAGGATATCATTAAGGTTGGAAATGGTTTCACTTGATGATCTTCTTATACCATCTCTGCAGAGTGGGGACTCCTTGTTTGACGTGGACACAGTTCACAGGCTACTAGAGAATTTCTTGCAGCGGATTGAAGAGGAAGAAGCGGAAGACTACGGATATGAATCCGATGGGATTGGTTCTAATGGACATGGTTCTCTGCTAAAAGTAGGTCAGCTTATTGATGCTTTTTTAGCAGAAATTGCTCCTGATCCTTGCTTAAGTCTACAGAAATTCATCGCTTTGATTGAGATACTTCCTGATTATGCCCGTGTCATTGATGATGGTCTTTATAGAGCCGTCGACATTTATTTGAAGGCCCATACAGCATTAACAGAACAAGAATGCAAGAAACTTTGCAAGTTTATAGACTGTCAGAAGCTGTCACAAGAAGCATGCAACCATGCTGCACAGAATGACAGGCTTCCACTGCAGATGGTGGTACAAGTCCTGTATTTTGAGCAGTTGCGCTTGAAAAATGCCGTGTCGGGGAGTTCAGGAGATGGGCTGCTATCACAGAGAATAAGTAGCGGTGTTCCGAGTGCAGCCATGTCTCCTAGGGACAACTACGCATCACTGCGGAGAGAGAATCGAGAACTGAAGCTGGAGATTTCAAGATTGAGGGTGAGGCTGAGTGAGTTGGAGAAGGAGCAAATGTTCATGAAACAAGGCATGATTGATAAAGCAGAAAATGGAAAAACTTTCTTTACCTCACTTTCTAAGGGGATAGGAAGAATTGCAAATTTTAGCAGTCAAGGTGGAGGAAATCGCCAAAAAGCAAGTAGGAAGTCTCGGGGAACAGAGGGGAAAAATGGCAGGAGTAGGAGATATTCTCTCTCATAG

Protein sequence

>Msa1064220

MVSENSLSSSKHSSTTTTPKFCNSYTTRIFADVAGDITIVVDGESFLLHKFPLVTLSGKIRKMVAEANKGSSVSNLELPNFPGGHQTFELAMKFCYGMNFEITTFNVARLRCAAEYLEMTEEYRDQNLISRTDIYLSEIVFQNLQRSVEVLSTCEMLPLNIVEEIEITKGSVEAIAMNACKEQLVSGLSKLHCDGESKEIKDECVAWWIEDLSILRIDFYQRVICAMGRMGVRSDNIIASLMHYAQTSLKGIGKCQLWNQSRTNSSPTAIEKDQRTTVETIVNLMPTDKSSSIIPLTFLFGMLKMAIMLGATIPCRLELERRISLRLEMVSLDDLLIPSLQSGDSLFDVDTVHRLLENFLQRIEEEEAEDYGYESDGIGSNGHGSLLKVGQLIDAFLAEIAPDPCLSLQKFIALIEILPDYARVIDDGLYRAVDIYLKAHTALTEQECKKLCKFIDCQKLSQEACNHAAQNDRLPLQMVVQVLYFEQLRLKNAVSGSSGDGLLSQRISSGVPSAAMSPRDNYASLRRENRELKLEISRLRVRLSELEKEQMFMKQGMIDKAENGKTFFTSLSKGIGRIANFSSQGGGNRQKASRKSRGTEGKNGRSRRYSLS*