Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064970 | XP_003623570.1 | 95.447 | 571 | 24 | 2 | 1 | 570 | 1 | 570 | 0.0 | 1078 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064970 | sp|F4ISY0|Y2837_ARATH | 43.369 | 558 | 241 | 14 | 14 | 555 | 6 | 504 | 8.33e-113 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064970 | G7KX28 | 95.447 | 571 | 24 | 2 | 1 | 570 | 1 | 570 | 0.0 | 1078 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1064970 | Msa1153730 | 0.823913 | 1.072158e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064970 | MtrunA17_Chr7g0244501 | 95.447 | 571 | 24 | 2 | 1 | 570 | 1 | 570 | 0.0 | 1078 |
| Msa1064970 | MtrunA17_Chr4g0013151 | 64.919 | 553 | 156 | 12 | 12 | 552 | 76 | 602 | 0.0 | 595 |
| Msa1064970 | MtrunA17_Chr3g0114551 | 35.144 | 589 | 312 | 10 | 26 | 557 | 21 | 596 | 1.75e-76 | 253 |
| Msa1064970 | MtrunA17_Chr5g0438111 | 35.663 | 558 | 288 | 13 | 26 | 562 | 27 | 534 | 4.20e-70 | 235 |
| Msa1064970 | MtrunA17_Chr3g0133891 | 30.686 | 277 | 188 | 2 | 176 | 448 | 595 | 871 | 1.17e-25 | 112 |
| Msa1064970 | MtrunA17_Chr1g0153431 | 29.710 | 276 | 166 | 5 | 176 | 434 | 576 | 840 | 9.26e-20 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064970 | AT2G38370.1 | 43.369 | 558 | 241 | 14 | 14 | 555 | 6 | 504 | 8.47e-114 | 348 |
| Msa1064970 | AT2G38370.2 | 43.369 | 558 | 241 | 14 | 14 | 555 | 23 | 521 | 1.06e-113 | 349 |
| Msa1064970 | AT2G40480.1 | 35.818 | 550 | 252 | 16 | 26 | 562 | 54 | 515 | 1.50e-64 | 220 |
| Msa1064970 | AT3G51720.1 | 36.059 | 538 | 179 | 19 | 26 | 555 | 8 | 388 | 2.34e-58 | 200 |
| Msa1064970 | AT3G56270.1 | 31.887 | 461 | 232 | 12 | 27 | 486 | 41 | 420 | 1.17e-36 | 142 |
| Msa1064970 | AT2G26570.1 | 30.792 | 341 | 204 | 7 | 109 | 444 | 427 | 740 | 9.84e-27 | 115 |
| Msa1064970 | AT2G26570.1 | 39.669 | 121 | 53 | 3 | 11 | 123 | 145 | 253 | 2.51e-13 | 73.6 |
| Msa1064970 | AT2G26570.2 | 30.792 | 341 | 204 | 7 | 109 | 444 | 427 | 740 | 9.84e-27 | 115 |
| Msa1064970 | AT2G26570.2 | 39.669 | 121 | 53 | 3 | 11 | 123 | 145 | 253 | 2.51e-13 | 73.6 |
| Msa1064970 | AT5G42880.1 | 33.594 | 256 | 156 | 4 | 193 | 434 | 413 | 668 | 6.13e-20 | 94.4 |
| Msa1064970 | AT4G33390.1 | 32.210 | 267 | 177 | 2 | 176 | 438 | 460 | 726 | 7.32e-19 | 91.3 |
| Msa1064970 | AT4G33390.1 | 44.554 | 101 | 50 | 4 | 24 | 123 | 149 | 244 | 5.60e-13 | 72.4 |
| Msa1064970 | AT1G45545.1 | 28.185 | 259 | 161 | 2 | 176 | 432 | 443 | 678 | 2.34e-15 | 80.1 |
| Msa1064970 | AT1G45545.2 | 28.185 | 259 | 161 | 2 | 176 | 432 | 444 | 679 | 2.43e-15 | 80.1 |
Find 118 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGTTGAAGAGGCTTTA+AGG | 0.157861 | 7_2:+58378463 | Msa1064970:CDS |
| TGACGTAAATGGACTGAATT+TGG | 0.192530 | 7_2:+58378587 | Msa1064970:CDS |
| GCTTCGGTGGTGTTGGTTAC+TGG | 0.215926 | 7_2:+58376244 | Msa1064970:CDS |
| TTCTTCAAGGGCCTTCTTGC+AGG | 0.218507 | 7_2:-58378403 | None:intergenic |
| ATCTCTCATTTCTCATTCTA+AGG | 0.224795 | 7_2:+58376287 | Msa1064970:CDS |
| CAAATCTTCAACAAGCCTTT+TGG | 0.268546 | 7_2:-58377533 | None:intergenic |
| GGCAATATCATGAGTAGTTT+TGG | 0.272866 | 7_2:-58377770 | None:intergenic |
| TTCACTCTTTATAGAGAAAC+TGG | 0.288738 | 7_2:+58379016 | Msa1064970:three_prime_UTR |
| TTGTGTCGTGTTGGAGTGTT+TGG | 0.292270 | 7_2:-58376012 | None:intergenic |
| TGCCACTTGCAGTCTTAATC+TGG | 0.293211 | 7_2:-58377923 | None:intergenic |
| ATACGGTTACTTGACGTAAA+TGG | 0.299098 | 7_2:+58378576 | Msa1064970:CDS |
| TCTGCCAAGAGAAAGAAATT+TGG | 0.300453 | 7_2:+58378834 | Msa1064970:CDS |
| CTGCCAAGAGAAAGAAATTT+GGG | 0.301158 | 7_2:+58378835 | Msa1064970:CDS |
| TGATAAGAACTGCCGAAATT+AGG | 0.303722 | 7_2:+58378091 | Msa1064970:CDS |
| CTTGCAGTCTTAATCTGGTT+TGG | 0.345195 | 7_2:-58377918 | None:intergenic |
| TTTGATGTACTAAATATATA+TGG | 0.352322 | 7_2:+58379057 | Msa1064970:three_prime_UTR |
| GTGGCAAAAGGTGGTGCTTC+TGG | 0.355304 | 7_2:+58377940 | Msa1064970:CDS |
| GAGCAAACTGAGAAAGAAAA+TGG | 0.365094 | 7_2:+58378795 | Msa1064970:CDS |
| GGTATTCAGGTTGCAGTCCC+TGG | 0.368452 | 7_2:+58379137 | Msa1064970:three_prime_UTR |
| TACTGCAACTAACCTAATTT+CGG | 0.379789 | 7_2:-58378103 | None:intergenic |
| TTCTCCAGACTTGATACTAA+TGG | 0.384913 | 7_2:+58377720 | Msa1064970:CDS |
| CCCTTTGTAGAGCTTCTTCA+AGG | 0.399161 | 7_2:-58378416 | None:intergenic |
| GATAGAGTCGGCTTTAAAAC+AGG | 0.402456 | 7_2:-58378627 | None:intergenic |
| ACCACATAGAAGAGCTTGAC+AGG | 0.409010 | 7_2:+58377419 | Msa1064970:CDS |
| ATCGGTTCTTCAAACTCTTC+TGG | 0.412083 | 7_2:-58378684 | None:intergenic |
| TTAAAGCCGACTCTATCAAT+AGG | 0.421757 | 7_2:+58378633 | Msa1064970:CDS |
| ACTCTGGTCCATCTGATCAT+AGG | 0.422249 | 7_2:+58378547 | Msa1064970:CDS |
| CAAATTCATTCACTTGAAGA+TGG | 0.426934 | 7_2:+58376089 | Msa1064970:exon |
| GGCTGCAGATAGAGGGAAGT+TGG | 0.431544 | 7_2:+58378443 | Msa1064970:CDS |
| AATTCCATTAGTATCAAGTC+TGG | 0.436262 | 7_2:-58377724 | None:intergenic |
| GACGACGTATCAAGCTGAAC+CGG | 0.439494 | 7_2:+58376131 | Msa1064970:CDS |
| AAACAACAGAAGGTGTCATT+AGG | 0.445263 | 7_2:+58378732 | Msa1064970:CDS |
| TAGCTCTTGTCATTGATAGA+TGG | 0.446695 | 7_2:-58378956 | None:intergenic |
| ATCTTCAAAGAACAAGATAA+TGG | 0.450459 | 7_2:+58376158 | Msa1064970:CDS |
| AAGAACTGATCCTAAAAGAA+AGG | 0.454762 | 7_2:+58377476 | Msa1064970:CDS |
| CTGAAACGATATTGAATCTC+GGG | 0.455182 | 7_2:+58377581 | Msa1064970:CDS |
| GAACCCAAATTTCTTTCTCT+TGG | 0.459063 | 7_2:-58378838 | None:intergenic |
| AGGGAAGTTGGAAGTTGAAG+AGG | 0.467502 | 7_2:+58378455 | Msa1064970:CDS |
| TGTAGATGAGAAAGAAGTAA+AGG | 0.480056 | 7_2:+58377630 | Msa1064970:CDS |
| AGTTCTGCTGTAACATCTAA+AGG | 0.480622 | 7_2:-58377967 | None:intergenic |
| CTGATCATAGGAGAGATATA+CGG | 0.482919 | 7_2:+58378559 | Msa1064970:CDS |
| ATAAGAAATTAGAGAAAGAA+AGG | 0.483070 | 7_2:+58377821 | Msa1064970:CDS |
| AAGAATTAGAAAAGACCAAA+AGG | 0.492625 | 7_2:+58377518 | Msa1064970:CDS |
| CAGGGAGAAACTAGAGGAGC+AGG | 0.495153 | 7_2:+58377438 | Msa1064970:CDS |
| TTGAAGAGGCTTTAAGGAAG+TGG | 0.497849 | 7_2:+58378469 | Msa1064970:CDS |
| AGTCGGCTTTAAAACAGGCT+TGG | 0.498226 | 7_2:-58378622 | None:intergenic |
| TTCAGCTCCATTTGAATCTG+TGG | 0.499896 | 7_2:+58376206 | Msa1064970:CDS |
| ATTCACCTCAAGTTCAGCAT+TGG | 0.505619 | 7_2:-58378909 | None:intergenic |
| GTTAACCGCTTCGGTGGTGT+TGG | 0.510408 | 7_2:+58376237 | Msa1064970:CDS |
| AGAACTGATCCTAAAAGAAA+GGG | 0.516905 | 7_2:+58377477 | Msa1064970:CDS |
| AGAGGAGCAGGCAAGAGCGT+TGG | 0.517338 | 7_2:+58377450 | Msa1064970:CDS |
| CCCTGTCAAGCTCTTCTATG+TGG | 0.518116 | 7_2:-58377420 | None:intergenic |
| GGCATAGAACATTCCTTCAC+GGG | 0.519289 | 7_2:-58377685 | None:intergenic |
| GGGTTGAGGCTGCAGATAGA+GGG | 0.519601 | 7_2:+58378436 | Msa1064970:CDS |
| AAATTAGGTTAGTTGCAGTA+AGG | 0.521800 | 7_2:+58378106 | Msa1064970:CDS |
| CAATAGGACAAATACTGAGC+AGG | 0.522093 | 7_2:+58378649 | Msa1064970:CDS |
| AGGGTTGAGGCTGCAGATAG+AGG | 0.522185 | 7_2:+58378435 | Msa1064970:CDS |
| GCTTCATCCACAGATTCAAA+TGG | 0.523980 | 7_2:-58376213 | None:intergenic |
| GATACTAATGGAATTGAAGC+AGG | 0.525759 | 7_2:+58377732 | Msa1064970:CDS |
| AGAGATGGAAGATTGTGAAA+GGG | 0.528202 | 7_2:-58376270 | None:intergenic |
| TCTGAAACGATATTGAATCT+CGG | 0.530021 | 7_2:+58377580 | Msa1064970:CDS |
| TTAAGACTGCAAGTGGCAAA+AGG | 0.531244 | 7_2:+58377928 | Msa1064970:CDS |
| TGTGTCGTGTTGGAGTGTTT+GGG | 0.531540 | 7_2:-58376011 | None:intergenic |
| TATAGAGAAACTGGAATGCA+TGG | 0.532259 | 7_2:+58379025 | Msa1064970:three_prime_UTR |
| GAGAGATGGAAGATTGTGAA+AGG | 0.532273 | 7_2:-58376271 | None:intergenic |
| TCAAGTCTGGAGAAGATACA+TGG | 0.533490 | 7_2:-58377711 | None:intergenic |
| TCGTAAAGCTCGAGAGGCAG+AGG | 0.536617 | 7_2:+58378272 | Msa1064970:CDS |
| TGAAGCAAATTCTTCGCAGA+TGG | 0.542868 | 7_2:+58378338 | Msa1064970:CDS |
| ATTTGTCCTATTGATAGAGT+CGG | 0.552627 | 7_2:-58378639 | None:intergenic |
| CGGCCTTTGAACTCAATCGA+TGG | 0.552819 | 7_2:-58377990 | None:intergenic |
| GAACCTCAGACGGACTCGAT+TGG | 0.556300 | 7_2:-58377657 | None:intergenic |
| TTTGAAGAACCGATGGTGCA+TGG | 0.559513 | 7_2:+58378693 | Msa1064970:CDS |
| GATGAAGCTGTTAACCGCTT+CGG | 0.561446 | 7_2:+58376228 | Msa1064970:CDS |
| AACCAGATTAAGACTGCAAG+TGG | 0.562004 | 7_2:+58377921 | Msa1064970:CDS |
| AGTTGCAGTAAGGAAAATGA+AGG | 0.562072 | 7_2:+58378116 | Msa1064970:CDS |
| TTGTTCTTTGAAGATGAACC+CGG | 0.563644 | 7_2:-58376150 | None:intergenic |
| GGAAATCACTCTTTCAGTTG+AGG | 0.563644 | 7_2:+58378233 | Msa1064970:CDS |
| ATATCTCTCCTATGATCAGA+TGG | 0.563884 | 7_2:-58378555 | None:intergenic |
| TTAGAATGAGAAATGAGAGA+TGG | 0.565008 | 7_2:-58376285 | None:intergenic |
| CAATGCGTTAATTTCTGCAA+GGG | 0.572501 | 7_2:-58378166 | None:intergenic |
| TTCAACAGTAGCTCGTACAT+CGG | 0.575007 | 7_2:-58377791 | None:intergenic |
| TTAAGGAAGTGGCGATCTGA+CGG | 0.579749 | 7_2:+58378480 | Msa1064970:CDS |
| AGAAGTTCAAACCTGCAAGA+AGG | 0.580057 | 7_2:+58378392 | Msa1064970:CDS |
| ATGACAAGAGCTAGACTCAA+AGG | 0.581273 | 7_2:+58378966 | Msa1064970:three_prime_UTR |
| AGGCATAGAACATTCCTTCA+CGG | 0.582187 | 7_2:-58377686 | None:intergenic |
| CCTTGAAGAAGCTCTACAAA+GGG | 0.582325 | 7_2:+58378416 | Msa1064970:CDS |
| AAAATGTATAGCAAAATGCT+GGG | 0.583547 | 7_2:-58379110 | None:intergenic |
| GTGAAGATGTTGTGTCGTGT+TGG | 0.585533 | 7_2:-58376021 | None:intergenic |
| TTTGAAATCAAAGCTGCAGA+AGG | 0.585814 | 7_2:+58377552 | Msa1064970:CDS |
| GTGTCATTAGGTCATATGCT+TGG | 0.589947 | 7_2:+58378744 | Msa1064970:CDS |
| CCCTTGAAGAAGCTCTACAA+AGG | 0.590773 | 7_2:+58378415 | Msa1064970:CDS |
| ACGGGTTGAAGAACCTCAGA+CGG | 0.594605 | 7_2:-58377667 | None:intergenic |
| CCTTTGTAGAGCTTCTTCAA+GGG | 0.596110 | 7_2:-58378415 | None:intergenic |
| TGAGGTTCTTCAACCCGTGA+AGG | 0.596859 | 7_2:+58377672 | Msa1064970:CDS |
| TCAGTTTGCTCATCAAACGA+TGG | 0.598903 | 7_2:-58378783 | None:intergenic |
| TACTTAGTTAATGTAAAACC+AGG | 0.599084 | 7_2:-58379155 | None:intergenic |
| ACAATGCGTTAATTTCTGCA+AGG | 0.601615 | 7_2:-58378167 | None:intergenic |
| AGAAACCAATGCTGAACTTG+AGG | 0.604096 | 7_2:+58378904 | Msa1064970:CDS |
| GAAGCTGTTAACCGCTTCGG+TGG | 0.605267 | 7_2:+58376231 | Msa1064970:CDS |
| ACTATTTCTCCATGCACCAT+CGG | 0.609425 | 7_2:-58378702 | None:intergenic |
| ACTCTTCTGATGTACTCTCA+TGG | 0.611278 | 7_2:-58378194 | None:intergenic |
| ACGACGTATCAAGCTGAACC+GGG | 0.613614 | 7_2:+58376132 | Msa1064970:CDS |
| ACTCCATCGATTGAGTTCAA+AGG | 0.615384 | 7_2:+58377987 | Msa1064970:CDS |
| AGAAGCTCTACAAAGGGTTG+AGG | 0.617257 | 7_2:+58378422 | Msa1064970:CDS |
| ACTCAAAGGTAGCATCCCCT+AGG | 0.619776 | 7_2:+58378980 | Msa1064970:three_prime_UTR |
| AAACCAATCGAGTCCGTCTG+AGG | 0.623782 | 7_2:+58377654 | Msa1064970:CDS |
| TCTGACTCGTAAAGCTCGAG+AGG | 0.637832 | 7_2:+58378266 | Msa1064970:CDS |
| AGAAGAGTTTGAAGAACCGA+TGG | 0.638252 | 7_2:+58378686 | Msa1064970:CDS |
| AGACTGCAAGTGGCAAAAGG+TGG | 0.660399 | 7_2:+58377931 | Msa1064970:CDS |
| CACTTGAGAAAACCCGTGAG+AGG | 0.664946 | 7_2:+58377848 | Msa1064970:CDS |
| AGTCTCAGTGAAACAACAGA+AGG | 0.667767 | 7_2:+58378722 | Msa1064970:CDS |
| TCTGGAGAAGATACATGGGA+AGG | 0.668166 | 7_2:-58377706 | None:intergenic |
| CAAGTCTGGAGAAGATACAT+GGG | 0.676113 | 7_2:-58377710 | None:intergenic |
| GCTTGACAGGGAGAAACTAG+AGG | 0.676961 | 7_2:+58377432 | Msa1064970:CDS |
| CCACATAGAAGAGCTTGACA+GGG | 0.677555 | 7_2:+58377420 | Msa1064970:CDS |
| AGTAACCAACACCACCGAAG+CGG | 0.679694 | 7_2:-58376242 | None:intergenic |
| ACTTAGTTAATGTAAAACCA+GGG | 0.714348 | 7_2:-58379154 | None:intergenic |
| AGAGTGTATGCAGAAGCGCG+AGG | 0.725141 | 7_2:+58378212 | Msa1064970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCTAATTTTTGATATATA+TGG | - | chr7_2:58376938-58376957 | None:intergenic | 10.0% |
| !!! | AATTTTGTTTTCAAAATTTT+GGG | + | chr7_2:58377095-58377114 | Msa1064970:intron | 10.0% |
| !!! | AATTGACATTGTTTAATTTT+GGG | - | chr7_2:58376998-58377017 | None:intergenic | 15.0% |
| !!! | CAATTTTGTTTTCAAAATTT+TGG | + | chr7_2:58377094-58377113 | Msa1064970:intron | 15.0% |
| !!! | ATTTTGTTTTCAAAATTTTG+GGG | + | chr7_2:58377096-58377115 | Msa1064970:intron | 15.0% |
| !! | TTTGATGTACTAAATATATA+TGG | + | chr7_2:58379057-58379076 | Msa1064970:three_prime_UTR | 15.0% |
| !!! | ATTTTGCTATACATTTTTTA+TGG | + | chr7_2:58379116-58379135 | Msa1064970:three_prime_UTR | 15.0% |
| !! | AAACTATTTATGTGACTAAT+AGG | + | chr7_2:58376451-58376470 | Msa1064970:intron | 20.0% |
| !!! | AATAGGTGTTTTTTTTTTAC+TGG | + | chr7_2:58376468-58376487 | Msa1064970:intron | 20.0% |
| !!! | TGTAATTTTGATGTCAAATA+TGG | + | chr7_2:58376675-58376694 | Msa1064970:intron | 20.0% |
| !! | ATACAATGTAACTATAAATG+AGG | - | chr7_2:58376822-58376841 | None:intergenic | 20.0% |
| !!! | GAATTGACATTGTTTAATTT+TGG | - | chr7_2:58376999-58377018 | None:intergenic | 20.0% |
| !! | GAAAACAAAATTGATATGTT+TGG | - | chr7_2:58377087-58377106 | None:intergenic | 20.0% |
| !!! | AAAGTATTGGTATAAGATAT+GGG | + | chr7_2:58377142-58377161 | Msa1064970:intron | 20.0% |
| !! | ATAAGAAATTAGAGAAAGAA+AGG | + | chr7_2:58377821-58377840 | Msa1064970:CDS | 20.0% |
| !!! | TTTTAAAACTTCTGATTTTG+CGG | - | chr7_2:58378040-58378059 | None:intergenic | 20.0% |
| !!! | ATACATTTTTTATGGTATTC+AGG | + | chr7_2:58379124-58379143 | Msa1064970:three_prime_UTR | 20.0% |
| ! | AAAAAAAAGAGAGATAGAAC+AGG | - | chr7_2:58376068-58376087 | None:intergenic | 25.0% |
| ! | ATCTTCAAAGAACAAGATAA+TGG | + | chr7_2:58376158-58376177 | Msa1064970:CDS | 25.0% |
| !!! | TAGTGATTTGTTGCATTTTA+TGG | + | chr7_2:58376419-58376438 | Msa1064970:intron | 25.0% |
| ! | ATACATAGAGAAATGATGTT+TGG | + | chr7_2:58376584-58376603 | Msa1064970:intron | 25.0% |
| !! | TGATTTTAGATGAAGAATGT+TGG | + | chr7_2:58376766-58376785 | Msa1064970:intron | 25.0% |
| ! | ATGAAGAATGTTGGAAAATT+TGG | + | chr7_2:58376775-58376794 | Msa1064970:intron | 25.0% |
| ! | TGAAGAATGTTGGAAAATTT+GGG | + | chr7_2:58376776-58376795 | Msa1064970:intron | 25.0% |
| ! | TATAGTTACATTGTATGTGA+AGG | + | chr7_2:58376826-58376845 | Msa1064970:intron | 25.0% |
| !! | TGATATGTATCTGAAAGTAT+TGG | + | chr7_2:58377129-58377148 | Msa1064970:intron | 25.0% |
| !!! | GAAAGTATTGGTATAAGATA+TGG | + | chr7_2:58377141-58377160 | Msa1064970:intron | 25.0% |
| ! | ATAGTACATTGTTCTTATAG+AGG | + | chr7_2:58377206-58377225 | Msa1064970:intron | 25.0% |
| ! | AAGAATTAGAAAAGACCAAA+AGG | + | chr7_2:58377518-58377537 | Msa1064970:CDS | 25.0% |
| ! | TGTATGAAGTTTAAAAACTC+TGG | + | chr7_2:58378531-58378550 | Msa1064970:CDS | 25.0% |
| ! | AAAATGTATAGCAAAATGCT+GGG | - | chr7_2:58379113-58379132 | None:intergenic | 25.0% |
| ! | AAAAATGTATAGCAAAATGC+TGG | - | chr7_2:58379114-58379133 | None:intergenic | 25.0% |
| ! | ACTTAGTTAATGTAAAACCA+GGG | - | chr7_2:58379157-58379176 | None:intergenic | 25.0% |
| ! | TACTTAGTTAATGTAAAACC+AGG | - | chr7_2:58379158-58379177 | None:intergenic | 25.0% |
| CAAATTCATTCACTTGAAGA+TGG | + | chr7_2:58376089-58376108 | Msa1064970:exon | 30.0% | |
| TTAGAATGAGAAATGAGAGA+TGG | - | chr7_2:58376288-58376307 | None:intergenic | 30.0% | |
| ATCTCTCATTTCTCATTCTA+AGG | + | chr7_2:58376287-58376306 | Msa1064970:CDS | 30.0% | |
| !! | GACTATCAAAATTTTGATGC+CGG | + | chr7_2:58376606-58376625 | Msa1064970:intron | 30.0% |
| GCAAATTCGATTATACATTC+CGG | - | chr7_2:58376628-58376647 | None:intergenic | 30.0% | |
| GATTCCATTCTATATACGTT+AGG | + | chr7_2:58376855-58376874 | Msa1064970:intron | 30.0% | |
| CTAACCTAACGTATATAGAA+TGG | - | chr7_2:58376862-58376881 | None:intergenic | 30.0% | |
| ATGACAGTTGATCTTAAATG+GGG | - | chr7_2:58377297-58377316 | None:intergenic | 30.0% | |
| CATGACAGTTGATCTTAAAT+GGG | - | chr7_2:58377298-58377317 | None:intergenic | 30.0% | |
| TCATGACAGTTGATCTTAAA+TGG | - | chr7_2:58377299-58377318 | None:intergenic | 30.0% | |
| TGAGCTATATAGTAAGTTCT+CGG | + | chr7_2:58377377-58377396 | Msa1064970:intron | 30.0% | |
| AAGAACTGATCCTAAAAGAA+AGG | + | chr7_2:58377476-58377495 | Msa1064970:CDS | 30.0% | |
| AGAACTGATCCTAAAAGAAA+GGG | + | chr7_2:58377477-58377496 | Msa1064970:CDS | 30.0% | |
| ! | TCTGAAACGATATTGAATCT+CGG | + | chr7_2:58377580-58377599 | Msa1064970:CDS | 30.0% |
| TGTAGATGAGAAAGAAGTAA+AGG | + | chr7_2:58377630-58377649 | Msa1064970:CDS | 30.0% | |
| AATTCCATTAGTATCAAGTC+TGG | - | chr7_2:58377727-58377746 | None:intergenic | 30.0% | |
| !!! | AGTTTTGGTTAGGTTCAATT+TGG | - | chr7_2:58377758-58377777 | None:intergenic | 30.0% |
| !!! | TATCATGAGTAGTTTTGGTT+AGG | - | chr7_2:58377768-58377787 | None:intergenic | 30.0% |
| !! | AATTTTGAGTAAACCTCTCA+CGG | - | chr7_2:58377864-58377883 | None:intergenic | 30.0% |
| !!! | TCTCTTTTTTCTGAAATGCT+CGG | - | chr7_2:58378013-58378032 | None:intergenic | 30.0% |
| TACTGCAACTAACCTAATTT+CGG | - | chr7_2:58378106-58378125 | None:intergenic | 30.0% | |
| ! | AAATTAGGTTAGTTGCAGTA+AGG | + | chr7_2:58378106-58378125 | Msa1064970:CDS | 30.0% |
| !! | GCAGATGGATGTTTTTAAAA+GGG | + | chr7_2:58378353-58378372 | Msa1064970:CDS | 30.0% |
| ATTTGTCCTATTGATAGAGT+CGG | - | chr7_2:58378642-58378661 | None:intergenic | 30.0% | |
| AAATAAAAAACAGCACCTAG+GGG | - | chr7_2:58378998-58379017 | None:intergenic | 30.0% | |
| GAAATAAAAAACAGCACCTA+GGG | - | chr7_2:58378999-58379018 | None:intergenic | 30.0% | |
| TGAAATAAAAAACAGCACCT+AGG | - | chr7_2:58379000-58379019 | None:intergenic | 30.0% | |
| TTCACTCTTTATAGAGAAAC+TGG | + | chr7_2:58379016-58379035 | Msa1064970:three_prime_UTR | 30.0% | |
| ! | TTGTTCTTTGAAGATGAACC+CGG | - | chr7_2:58376153-58376172 | None:intergenic | 35.0% |
| AGAGATGGAAGATTGTGAAA+GGG | - | chr7_2:58376273-58376292 | None:intergenic | 35.0% | |
| ! | TGTTGCTATTATTGAGTGCT+AGG | + | chr7_2:58376538-58376557 | Msa1064970:intron | 35.0% |
| ! | GTTGCTATTATTGAGTGCTA+GGG | + | chr7_2:58376539-58376558 | Msa1064970:intron | 35.0% |
| !!! | TATTGAGTGCTAGGGTTTTT+TGG | + | chr7_2:58376547-58376566 | Msa1064970:intron | 35.0% |
| TGTGTGTAAATTGTCACGTA+CGG | + | chr7_2:58376712-58376731 | Msa1064970:intron | 35.0% | |
| TGTTGGAAAATTTGGGAAGT+AGG | + | chr7_2:58376783-58376802 | Msa1064970:intron | 35.0% | |
| ACATCTGTGACATACATACT+AGG | - | chr7_2:58376966-58376985 | None:intergenic | 35.0% | |
| ! | ATCCTAAAGTATCATCGAAG+AGG | + | chr7_2:58377057-58377076 | Msa1064970:intron | 35.0% |
| TGACAGTTGATCTTAAATGG+GGG | - | chr7_2:58377296-58377315 | None:intergenic | 35.0% | |
| GATCAACTGTCATGAAAATC+TGG | + | chr7_2:58377304-58377323 | Msa1064970:intron | 35.0% | |
| ! | CAAGAGTTTCCCTTTCTTTT+AGG | - | chr7_2:58377489-58377508 | None:intergenic | 35.0% |
| ! | CAAATCTTCAACAAGCCTTT+TGG | - | chr7_2:58377536-58377555 | None:intergenic | 35.0% |
| ! | TTTGAAATCAAAGCTGCAGA+AGG | + | chr7_2:58377552-58377571 | Msa1064970:CDS | 35.0% |
| CTGAAACGATATTGAATCTC+GGG | + | chr7_2:58377581-58377600 | Msa1064970:CDS | 35.0% | |
| TTCTCCAGACTTGATACTAA+TGG | + | chr7_2:58377720-58377739 | Msa1064970:CDS | 35.0% | |
| GATACTAATGGAATTGAAGC+AGG | + | chr7_2:58377732-58377751 | Msa1064970:CDS | 35.0% | |
| ! | GGCAATATCATGAGTAGTTT+TGG | - | chr7_2:58377773-58377792 | None:intergenic | 35.0% |
| !! | ATTTTGAGTAAACCTCTCAC+GGG | - | chr7_2:58377863-58377882 | None:intergenic | 35.0% |
| AGTTCTGCTGTAACATCTAA+AGG | - | chr7_2:58377970-58377989 | None:intergenic | 35.0% | |
| TGATAAGAACTGCCGAAATT+AGG | + | chr7_2:58378091-58378110 | Msa1064970:CDS | 35.0% | |
| AGTTGCAGTAAGGAAAATGA+AGG | + | chr7_2:58378116-58378135 | Msa1064970:CDS | 35.0% | |
| CAATGCGTTAATTTCTGCAA+GGG | - | chr7_2:58378169-58378188 | None:intergenic | 35.0% | |
| ACAATGCGTTAATTTCTGCA+AGG | - | chr7_2:58378170-58378189 | None:intergenic | 35.0% | |
| !! | CGCAGATGGATGTTTTTAAA+AGG | + | chr7_2:58378352-58378371 | Msa1064970:CDS | 35.0% |
| !! | GGATGTTTTTAAAAGGGTAG+AGG | + | chr7_2:58378359-58378378 | Msa1064970:CDS | 35.0% |
| ATATCTCTCCTATGATCAGA+TGG | - | chr7_2:58378558-58378577 | None:intergenic | 35.0% | |
| CTGATCATAGGAGAGATATA+CGG | + | chr7_2:58378559-58378578 | Msa1064970:CDS | 35.0% | |
| ATACGGTTACTTGACGTAAA+TGG | + | chr7_2:58378576-58378595 | Msa1064970:CDS | 35.0% | |
| !! | TGACGTAAATGGACTGAATT+TGG | + | chr7_2:58378587-58378606 | Msa1064970:CDS | 35.0% |
| ! | TTAAAGCCGACTCTATCAAT+AGG | + | chr7_2:58378633-58378652 | Msa1064970:CDS | 35.0% |
| !! | AAACAACAGAAGGTGTCATT+AGG | + | chr7_2:58378732-58378751 | Msa1064970:CDS | 35.0% |
| GAGCAAACTGAGAAAGAAAA+TGG | + | chr7_2:58378795-58378814 | Msa1064970:CDS | 35.0% | |
| TCTGCCAAGAGAAAGAAATT+TGG | + | chr7_2:58378834-58378853 | Msa1064970:CDS | 35.0% | |
| CTGCCAAGAGAAAGAAATTT+GGG | + | chr7_2:58378835-58378854 | Msa1064970:CDS | 35.0% | |
| GAACCCAAATTTCTTTCTCT+TGG | - | chr7_2:58378841-58378860 | None:intergenic | 35.0% | |
| TAGCTCTTGTCATTGATAGA+TGG | - | chr7_2:58378959-58378978 | None:intergenic | 35.0% | |
| TATAGAGAAACTGGAATGCA+TGG | + | chr7_2:58379025-58379044 | Msa1064970:three_prime_UTR | 35.0% | |
| TTCAGCTCCATTTGAATCTG+TGG | + | chr7_2:58376206-58376225 | Msa1064970:CDS | 40.0% | |
| GCTTCATCCACAGATTCAAA+TGG | - | chr7_2:58376216-58376235 | None:intergenic | 40.0% | |
| GAGAGATGGAAGATTGTGAA+AGG | - | chr7_2:58376274-58376293 | None:intergenic | 40.0% | |
| CACCTCTTCGATGATACTTT+AGG | - | chr7_2:58377062-58377081 | None:intergenic | 40.0% | |
| !! | AGGACAATGTAGCTTTGTGA+TGG | - | chr7_2:58377267-58377286 | None:intergenic | 40.0% |
| ! | ATCTTAAATGGGGGTGTAGA+AGG | - | chr7_2:58377287-58377306 | None:intergenic | 40.0% |
| AGGCATAGAACATTCCTTCA+CGG | - | chr7_2:58377689-58377708 | None:intergenic | 40.0% | |
| CAAGTCTGGAGAAGATACAT+GGG | - | chr7_2:58377713-58377732 | None:intergenic | 40.0% | |
| TCAAGTCTGGAGAAGATACA+TGG | - | chr7_2:58377714-58377733 | None:intergenic | 40.0% | |
| TTCAACAGTAGCTCGTACAT+CGG | - | chr7_2:58377794-58377813 | None:intergenic | 40.0% | |
| CTTGCAGTCTTAATCTGGTT+TGG | - | chr7_2:58377921-58377940 | None:intergenic | 40.0% | |
| AACCAGATTAAGACTGCAAG+TGG | + | chr7_2:58377921-58377940 | Msa1064970:CDS | 40.0% | |
| TTAAGACTGCAAGTGGCAAA+AGG | + | chr7_2:58377928-58377947 | Msa1064970:CDS | 40.0% | |
| ! | ACTCCATCGATTGAGTTCAA+AGG | + | chr7_2:58377987-58378006 | Msa1064970:CDS | 40.0% |
| ACTCTTCTGATGTACTCTCA+TGG | - | chr7_2:58378197-58378216 | None:intergenic | 40.0% | |
| GGAAATCACTCTTTCAGTTG+AGG | + | chr7_2:58378233-58378252 | Msa1064970:CDS | 40.0% | |
| TGAAGCAAATTCTTCGCAGA+TGG | + | chr7_2:58378338-58378357 | Msa1064970:CDS | 40.0% | |
| AGAAGTTCAAACCTGCAAGA+AGG | + | chr7_2:58378392-58378411 | Msa1064970:CDS | 40.0% | |
| CCTTTGTAGAGCTTCTTCAA+GGG | - | chr7_2:58378418-58378437 | None:intergenic | 40.0% | |
| CCTTGAAGAAGCTCTACAAA+GGG | + | chr7_2:58378416-58378435 | Msa1064970:CDS | 40.0% | |
| TGGAAGTTGAAGAGGCTTTA+AGG | + | chr7_2:58378463-58378482 | Msa1064970:CDS | 40.0% | |
| !! | TTGAAGAGGCTTTAAGGAAG+TGG | + | chr7_2:58378469-58378488 | Msa1064970:CDS | 40.0% |
| !! | GATAGAGTCGGCTTTAAAAC+AGG | - | chr7_2:58378630-58378649 | None:intergenic | 40.0% |
| CAATAGGACAAATACTGAGC+AGG | + | chr7_2:58378649-58378668 | Msa1064970:CDS | 40.0% | |
| ! | ATCGGTTCTTCAAACTCTTC+TGG | - | chr7_2:58378687-58378706 | None:intergenic | 40.0% |
| AGAAGAGTTTGAAGAACCGA+TGG | + | chr7_2:58378686-58378705 | Msa1064970:CDS | 40.0% | |
| ! | ACTATTTCTCCATGCACCAT+CGG | - | chr7_2:58378705-58378724 | None:intergenic | 40.0% |
| AGTCTCAGTGAAACAACAGA+AGG | + | chr7_2:58378722-58378741 | Msa1064970:CDS | 40.0% | |
| ! | GTGTCATTAGGTCATATGCT+TGG | + | chr7_2:58378744-58378763 | Msa1064970:CDS | 40.0% |
| ! | TCAGTTTGCTCATCAAACGA+TGG | - | chr7_2:58378786-58378805 | None:intergenic | 40.0% |
| AGAAACCAATGCTGAACTTG+AGG | + | chr7_2:58378904-58378923 | Msa1064970:CDS | 40.0% | |
| ATTCACCTCAAGTTCAGCAT+TGG | - | chr7_2:58378912-58378931 | None:intergenic | 40.0% | |
| ATGACAAGAGCTAGACTCAA+AGG | + | chr7_2:58378966-58378985 | Msa1064970:three_prime_UTR | 40.0% | |
| ! | TGTGTCGTGTTGGAGTGTTT+GGG | - | chr7_2:58376014-58376033 | None:intergenic | 45.0% |
| ! | TTGTGTCGTGTTGGAGTGTT+TGG | - | chr7_2:58376015-58376034 | None:intergenic | 45.0% |
| GTGAAGATGTTGTGTCGTGT+TGG | - | chr7_2:58376024-58376043 | None:intergenic | 45.0% | |
| GATGAAGCTGTTAACCGCTT+CGG | + | chr7_2:58376228-58376247 | Msa1064970:CDS | 45.0% | |
| ACCACATAGAAGAGCTTGAC+AGG | + | chr7_2:58377419-58377438 | Msa1064970:CDS | 45.0% | |
| CCACATAGAAGAGCTTGACA+GGG | + | chr7_2:58377420-58377439 | Msa1064970:CDS | 45.0% | |
| GGCATAGAACATTCCTTCAC+GGG | - | chr7_2:58377688-58377707 | None:intergenic | 45.0% | |
| TCTGGAGAAGATACATGGGA+AGG | - | chr7_2:58377709-58377728 | None:intergenic | 45.0% | |
| ! | TGCCACTTGCAGTCTTAATC+TGG | - | chr7_2:58377926-58377945 | None:intergenic | 45.0% |
| CCCTTGAAGAAGCTCTACAA+AGG | + | chr7_2:58378415-58378434 | Msa1064970:CDS | 45.0% | |
| CCCTTTGTAGAGCTTCTTCA+AGG | - | chr7_2:58378419-58378438 | None:intergenic | 45.0% | |
| AGAAGCTCTACAAAGGGTTG+AGG | + | chr7_2:58378422-58378441 | Msa1064970:CDS | 45.0% | |
| AGGGAAGTTGGAAGTTGAAG+AGG | + | chr7_2:58378455-58378474 | Msa1064970:CDS | 45.0% | |
| TTAAGGAAGTGGCGATCTGA+CGG | + | chr7_2:58378480-58378499 | Msa1064970:CDS | 45.0% | |
| ACTCTGGTCCATCTGATCAT+AGG | + | chr7_2:58378547-58378566 | Msa1064970:CDS | 45.0% | |
| !! | AGTCGGCTTTAAAACAGGCT+TGG | - | chr7_2:58378625-58378644 | None:intergenic | 45.0% |
| TTTGAAGAACCGATGGTGCA+TGG | + | chr7_2:58378693-58378712 | Msa1064970:CDS | 45.0% | |
| GACGACGTATCAAGCTGAAC+CGG | + | chr7_2:58376131-58376150 | Msa1064970:CDS | 50.0% | |
| ACGACGTATCAAGCTGAACC+GGG | + | chr7_2:58376132-58376151 | Msa1064970:CDS | 50.0% | |
| AGTAACCAACACCACCGAAG+CGG | - | chr7_2:58376245-58376264 | None:intergenic | 50.0% | |
| CCCTGTCAAGCTCTTCTATG+TGG | - | chr7_2:58377423-58377442 | None:intergenic | 50.0% | |
| GCTTGACAGGGAGAAACTAG+AGG | + | chr7_2:58377432-58377451 | Msa1064970:CDS | 50.0% | |
| AAACCAATCGAGTCCGTCTG+AGG | + | chr7_2:58377654-58377673 | Msa1064970:CDS | 50.0% | |
| ! | ACGGGTTGAAGAACCTCAGA+CGG | - | chr7_2:58377670-58377689 | None:intergenic | 50.0% |
| TGAGGTTCTTCAACCCGTGA+AGG | + | chr7_2:58377672-58377691 | Msa1064970:CDS | 50.0% | |
| CACTTGAGAAAACCCGTGAG+AGG | + | chr7_2:58377848-58377867 | Msa1064970:CDS | 50.0% | |
| AGACTGCAAGTGGCAAAAGG+TGG | + | chr7_2:58377931-58377950 | Msa1064970:CDS | 50.0% | |
| CGGCCTTTGAACTCAATCGA+TGG | - | chr7_2:58377993-58378012 | None:intergenic | 50.0% | |
| ! | TCTGACTCGTAAAGCTCGAG+AGG | + | chr7_2:58378266-58378285 | Msa1064970:CDS | 50.0% |
| TTCTTCAAGGGCCTTCTTGC+AGG | - | chr7_2:58378406-58378425 | None:intergenic | 50.0% | |
| GGCGATCTGACGGTCAAAAA+AGG | + | chr7_2:58378490-58378509 | Msa1064970:CDS | 50.0% | |
| ACTCAAAGGTAGCATCCCCT+AGG | + | chr7_2:58378980-58378999 | Msa1064970:three_prime_UTR | 50.0% | |
| GAAGCTGTTAACCGCTTCGG+TGG | + | chr7_2:58376231-58376250 | Msa1064970:CDS | 55.0% | |
| GTTAACCGCTTCGGTGGTGT+TGG | + | chr7_2:58376237-58376256 | Msa1064970:CDS | 55.0% | |
| !! | GCTTCGGTGGTGTTGGTTAC+TGG | + | chr7_2:58376244-58376263 | Msa1064970:CDS | 55.0% |
| CAGGGAGAAACTAGAGGAGC+AGG | + | chr7_2:58377438-58377457 | Msa1064970:CDS | 55.0% | |
| ! | GAACCTCAGACGGACTCGAT+TGG | - | chr7_2:58377660-58377679 | None:intergenic | 55.0% |
| GTGGCAAAAGGTGGTGCTTC+TGG | + | chr7_2:58377940-58377959 | Msa1064970:CDS | 55.0% | |
| ! | AGAGTGTATGCAGAAGCGCG+AGG | + | chr7_2:58378212-58378231 | Msa1064970:CDS | 55.0% |
| TCGTAAAGCTCGAGAGGCAG+AGG | + | chr7_2:58378272-58378291 | Msa1064970:CDS | 55.0% | |
| AGGGTTGAGGCTGCAGATAG+AGG | + | chr7_2:58378435-58378454 | Msa1064970:CDS | 55.0% | |
| GGGTTGAGGCTGCAGATAGA+GGG | + | chr7_2:58378436-58378455 | Msa1064970:CDS | 55.0% | |
| GGCTGCAGATAGAGGGAAGT+TGG | + | chr7_2:58378443-58378462 | Msa1064970:CDS | 55.0% | |
| !! | GGTATTCAGGTTGCAGTCCC+TGG | + | chr7_2:58379137-58379156 | Msa1064970:three_prime_UTR | 55.0% |
| ! | AGAGGAGCAGGCAAGAGCGT+TGG | + | chr7_2:58377450-58377469 | Msa1064970:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 58376003 | 58379197 | 58376003 | ID=Msa1064970;Name=Msa1064970 |
| chr7_2 | mRNA | 58376003 | 58379197 | 58376003 | ID=Msa1064970-mRNA-1;Parent=Msa1064970;Name=Msa1064970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|1|1|2|268|570 |
| chr7_2 | exon | 58376003 | 58376308 | 58376003 | ID=Msa1064970-mRNA-1:exon:11033;Parent=Msa1064970-mRNA-1 |
| chr7_2 | exon | 58377418 | 58379197 | 58377418 | ID=Msa1064970-mRNA-1:exon:11034;Parent=Msa1064970-mRNA-1 |
| chr7_2 | five_prime_UTR | 58376003 | 58376107 | 58376003 | ID=Msa1064970-mRNA-1:five_prime_utr;Parent=Msa1064970-mRNA-1 |
| chr7_2 | CDS | 58376108 | 58376308 | 58376108 | ID=Msa1064970-mRNA-1:cds;Parent=Msa1064970-mRNA-1 |
| chr7_2 | CDS | 58377418 | 58378929 | 58377418 | ID=Msa1064970-mRNA-1:cds;Parent=Msa1064970-mRNA-1 |
| chr7_2 | three_prime_UTR | 58378930 | 58379197 | 58378930 | ID=Msa1064970-mRNA-1:three_prime_utr;Parent=Msa1064970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
