Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153730 | XP_003623570.1 | 95.797 | 571 | 23 | 1 | 1 | 571 | 1 | 570 | 0.0 | 1088 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153730 | sp|F4ISY0|Y2837_ARATH | 43.393 | 560 | 239 | 15 | 14 | 556 | 6 | 504 | 3.91e-112 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153730 | G7KX28 | 95.797 | 571 | 23 | 1 | 1 | 571 | 1 | 570 | 0.0 | 1088 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1064970 | Msa1153730 | 0.823913 | 1.072158e-53 | -8.615850e-47 |
| Msa1110070 | Msa1153730 | 0.803805 | 2.925378e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153730 | MtrunA17_Chr7g0244501 | 95.797 | 571 | 23 | 1 | 1 | 571 | 1 | 570 | 0.0 | 1088 |
| Msa1153730 | MtrunA17_Chr4g0013151 | 64.982 | 554 | 155 | 12 | 12 | 553 | 76 | 602 | 0.0 | 595 |
| Msa1153730 | MtrunA17_Chr3g0114551 | 34.833 | 600 | 321 | 10 | 16 | 558 | 10 | 596 | 5.72e-77 | 254 |
| Msa1153730 | MtrunA17_Chr5g0438111 | 36.022 | 558 | 286 | 13 | 27 | 563 | 27 | 534 | 2.28e-71 | 238 |
| Msa1153730 | MtrunA17_Chr3g0133891 | 30.686 | 277 | 188 | 2 | 177 | 449 | 595 | 871 | 1.33e-25 | 112 |
| Msa1153730 | MtrunA17_Chr1g0153431 | 29.710 | 276 | 166 | 5 | 177 | 435 | 576 | 840 | 1.32e-19 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153730 | AT2G38370.1 | 43.393 | 560 | 239 | 15 | 14 | 556 | 6 | 504 | 3.98e-113 | 347 |
| Msa1153730 | AT2G38370.2 | 43.393 | 560 | 239 | 15 | 14 | 556 | 23 | 521 | 4.71e-113 | 347 |
| Msa1153730 | AT2G40480.1 | 35.818 | 550 | 252 | 16 | 27 | 563 | 54 | 515 | 1.10e-64 | 220 |
| Msa1153730 | AT3G51720.1 | 36.059 | 538 | 179 | 19 | 27 | 556 | 8 | 388 | 1.05e-58 | 201 |
| Msa1153730 | AT3G56270.1 | 31.656 | 477 | 240 | 13 | 16 | 487 | 25 | 420 | 7.77e-38 | 145 |
| Msa1153730 | AT2G26570.1 | 30.792 | 341 | 204 | 7 | 110 | 445 | 427 | 740 | 1.00e-26 | 115 |
| Msa1153730 | AT2G26570.1 | 40.164 | 122 | 52 | 4 | 11 | 124 | 145 | 253 | 3.02e-13 | 73.2 |
| Msa1153730 | AT2G26570.2 | 30.792 | 341 | 204 | 7 | 110 | 445 | 427 | 740 | 1.00e-26 | 115 |
| Msa1153730 | AT2G26570.2 | 40.164 | 122 | 52 | 4 | 11 | 124 | 145 | 253 | 3.02e-13 | 73.2 |
| Msa1153730 | AT5G42880.1 | 33.594 | 256 | 156 | 4 | 194 | 435 | 413 | 668 | 7.09e-20 | 94.4 |
| Msa1153730 | AT4G33390.1 | 32.210 | 267 | 177 | 2 | 177 | 439 | 460 | 726 | 6.69e-19 | 91.3 |
| Msa1153730 | AT4G33390.1 | 44.737 | 114 | 53 | 5 | 16 | 124 | 136 | 244 | 2.25e-14 | 77.0 |
| Msa1153730 | AT1G45545.1 | 28.185 | 259 | 161 | 2 | 177 | 433 | 443 | 678 | 2.73e-15 | 79.7 |
| Msa1153730 | AT1G45545.2 | 28.185 | 259 | 161 | 2 | 177 | 433 | 444 | 679 | 2.73e-15 | 79.7 |
Find 112 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAGTTGAAGAGGCTTTA+AGG | 0.138410 | 7_4:+40749123 | Msa1153730:CDS |
| ATTCGGTTACTTGATGTAAA+TGG | 0.201330 | 7_4:+40749236 | Msa1153730:CDS |
| GCTTCGGTGGTGTTGGTTAC+TGG | 0.215926 | 7_4:+40746674 | Msa1153730:CDS |
| TTCTTCAAGGGCCTTCTTGC+AGG | 0.218507 | 7_4:-40749063 | None:intergenic |
| ATCTCTCATTTCTCATTCTA+AGG | 0.224795 | 7_4:+40746717 | Msa1153730:CDS |
| TGATGTAAATGGATTGAATT+TGG | 0.242394 | 7_4:+40749247 | Msa1153730:CDS |
| CAAATCTTCAACAAGCCTTT+TGG | 0.268546 | 7_4:-40748193 | None:intergenic |
| GGCAATATCATGAGTAGTTT+TGG | 0.272866 | 7_4:-40748430 | None:intergenic |
| TCTGCTAAGAGAAAGAAATT+TGG | 0.281302 | 7_4:+40749494 | Msa1153730:CDS |
| TGCCACTTGCAGTCTTAATC+TGG | 0.293211 | 7_4:-40748583 | None:intergenic |
| TGATAAGAACTGCCGAAATT+AGG | 0.303722 | 7_4:+40748751 | Msa1153730:CDS |
| CTGCTAAGAGAAAGAAATTT+GGG | 0.308164 | 7_4:+40749495 | Msa1153730:CDS |
| CAAAAGTAGCGTCTCCTATT+AGG | 0.313248 | 7_4:+40749641 | Msa1153730:three_prime_UTR |
| TTCAAAGAACAACAACAAAA+TGG | 0.319037 | 7_4:+40746588 | Msa1153730:CDS |
| CTTGCAGTCTTAATCTGGTT+TGG | 0.345195 | 7_4:-40748578 | None:intergenic |
| AGAATGAGTGTTGGAGTGTT+TGG | 0.345801 | 7_4:-40746461 | None:intergenic |
| GGAATGTGCTGAGGCCTAAT+AGG | 0.345830 | 7_4:-40749655 | None:intergenic |
| CCCTTTGTAGAGCTTCTTCA+AGG | 0.349108 | 7_4:-40749076 | None:intergenic |
| GTGGCAAAAGGTGGTGCTTC+TGG | 0.355304 | 7_4:+40748600 | Msa1153730:CDS |
| TACTGCAACTAACCTAATTT+CGG | 0.379789 | 7_4:-40748763 | None:intergenic |
| TTCTCCAGACTTGATACTAA+TGG | 0.384913 | 7_4:+40748380 | Msa1153730:CDS |
| GAGCAAACTGAGAAAGAAAA+TGG | 0.397534 | 7_4:+40749455 | Msa1153730:CDS |
| GATAGAGTCGGCTTTAAAAC+AGG | 0.402456 | 7_4:-40749287 | None:intergenic |
| ACCACATAGAAGAGCTTGAC+AGG | 0.409010 | 7_4:+40748079 | Msa1153730:CDS |
| ATCGGTTCTTCAAACTCTTC+TGG | 0.412083 | 7_4:-40749344 | None:intergenic |
| TTAAAGCCGACTCTATCAAT+AGG | 0.421757 | 7_4:+40749293 | Msa1153730:CDS |
| ACTCTGGTCCATCTGATCAT+AGG | 0.422249 | 7_4:+40749207 | Msa1153730:CDS |
| AATTCCATTAGTATCAAGTC+TGG | 0.436262 | 7_4:-40748384 | None:intergenic |
| GACGACGTATCAAGCTGAAC+CGG | 0.439494 | 7_4:+40746558 | Msa1153730:CDS |
| GAATGAGTGTTGGAGTGTTT+GGG | 0.447270 | 7_4:-40746460 | None:intergenic |
| AAACAGCAGAAGGTGTCATT+AGG | 0.452154 | 7_4:+40749392 | Msa1153730:CDS |
| AAGAACTGATCCTAAAAGAA+AGG | 0.454762 | 7_4:+40748136 | Msa1153730:CDS |
| CTGAAACGATATTGAATCTC+GGG | 0.455182 | 7_4:+40748241 | Msa1153730:CDS |
| TAGCTCTTGTCATTGCTAGA+TGG | 0.456272 | 7_4:-40749614 | None:intergenic |
| GCTTCTTTCACAGATTCAAA+TGG | 0.467986 | 7_4:-40746643 | None:intergenic |
| TGTAGATGAGAAAGAAGTAA+AGG | 0.480056 | 7_4:+40748290 | Msa1153730:CDS |
| AGTTCTGCTGTAACATCTAA+AGG | 0.480622 | 7_4:-40748627 | None:intergenic |
| ATAAGAAATTAGAGAAAGAA+AGG | 0.483070 | 7_4:+40748481 | Msa1153730:CDS |
| CAAATTCATTCACTTCAAGA+TGG | 0.492605 | 7_4:+40746516 | Msa1153730:exon |
| AAGAATTAGAAAAGACCAAA+AGG | 0.492625 | 7_4:+40748178 | Msa1153730:CDS |
| CTGATCATAGGAGAGATATT+CGG | 0.493121 | 7_4:+40749219 | Msa1153730:CDS |
| AAAGAAGCTGTTAACCGCTT+CGG | 0.493823 | 7_4:+40746658 | Msa1153730:CDS |
| CAGGGAGAAACTAGAGGAGC+AGG | 0.495153 | 7_4:+40748098 | Msa1153730:CDS |
| TTGAAGAGGCTTTAAGGAAG+TGG | 0.497849 | 7_4:+40749129 | Msa1153730:CDS |
| AGTCGGCTTTAAAACAGGCT+TGG | 0.498226 | 7_4:-40749282 | None:intergenic |
| AGGGTAGAGGCTGCAGATAG+AGG | 0.502926 | 7_4:+40749095 | Msa1153730:CDS |
| AGGGAAGTTAGAAGTTGAAG+AGG | 0.506157 | 7_4:+40749115 | Msa1153730:CDS |
| ATTCACCTCAAGTTCAGCAT+TGG | 0.508102 | 7_4:-40749569 | None:intergenic |
| GTTAACCGCTTCGGTGGTGT+TGG | 0.510408 | 7_4:+40746667 | Msa1153730:CDS |
| AGAACTGATCCTAAAAGAAA+GGG | 0.516905 | 7_4:+40748137 | Msa1153730:CDS |
| GGGTAGAGGCTGCAGATAGA+GGG | 0.517190 | 7_4:+40749096 | Msa1153730:CDS |
| AGAGGAGCAGGCAAGAGCGT+TGG | 0.517338 | 7_4:+40748110 | Msa1153730:CDS |
| CCCTGTCAAGCTCTTCTATG+TGG | 0.518116 | 7_4:-40748080 | None:intergenic |
| GGCATAGAACATTCCTTCAC+GGG | 0.519289 | 7_4:-40748345 | None:intergenic |
| AAATTAGGTTAGTTGCAGTA+AGG | 0.521800 | 7_4:+40748766 | Msa1153730:CDS |
| CAATAGGACAAATACTGAGC+AGG | 0.522093 | 7_4:+40749309 | Msa1153730:CDS |
| GATACTAATGGAATTGAAGC+AGG | 0.525759 | 7_4:+40748392 | Msa1153730:CDS |
| AGAGATGGAAGATTGTGAAA+GGG | 0.528202 | 7_4:-40746700 | None:intergenic |
| TCTGAAACGATATTGAATCT+CGG | 0.530021 | 7_4:+40748240 | Msa1153730:CDS |
| TTAAGACTGCAAGTGGCAAA+AGG | 0.531244 | 7_4:+40748588 | Msa1153730:CDS |
| GAGAGATGGAAGATTGTGAA+AGG | 0.532273 | 7_4:-40746701 | None:intergenic |
| TCAAGTCTGGAGAAGATACA+TGG | 0.533490 | 7_4:-40748371 | None:intergenic |
| TCGTAAAGCTCGAGAGGCAG+AGG | 0.536617 | 7_4:+40748932 | Msa1153730:CDS |
| TGAAGCAAATTCTTCGCAGA+TGG | 0.542868 | 7_4:+40748998 | Msa1153730:CDS |
| TCAGTTTGCTCGTCAAACAA+TGG | 0.549642 | 7_4:-40749443 | None:intergenic |
| ATTTGTCCTATTGATAGAGT+CGG | 0.552627 | 7_4:-40749299 | None:intergenic |
| CGGCCTTTGAACTCAATCGA+TGG | 0.552819 | 7_4:-40748650 | None:intergenic |
| CCTTTGTAGAGCTTCTTCAA+GGG | 0.554451 | 7_4:-40749075 | None:intergenic |
| GAACCTCAGACGGACTCGAT+TGG | 0.556300 | 7_4:-40748317 | None:intergenic |
| TTTGAAGAACCGATGGTGCA+TGG | 0.559513 | 7_4:+40749353 | Msa1153730:CDS |
| AACCAGATTAAGACTGCAAG+TGG | 0.562004 | 7_4:+40748581 | Msa1153730:CDS |
| AGTTGCAGTAAGGAAAATGA+AGG | 0.562072 | 7_4:+40748776 | Msa1153730:CDS |
| TGGAGCTGAAGTATCAATCT+CGG | 0.562373 | 7_4:-40746623 | None:intergenic |
| ATATCTCTCCTATGATCAGA+TGG | 0.563474 | 7_4:-40749215 | None:intergenic |
| GGAAATCACTCTTTCAGTTG+AGG | 0.563644 | 7_4:+40748893 | Msa1153730:CDS |
| TTAGAATGAGAAATGAGAGA+TGG | 0.565008 | 7_4:-40746715 | None:intergenic |
| TTGTTCTTTGAAGATGAACC+CGG | 0.568935 | 7_4:-40746577 | None:intergenic |
| CAATGCGTTAATTTCTGCAA+GGG | 0.572501 | 7_4:-40748826 | None:intergenic |
| TTCAACAGTAGCTCGTACAT+CGG | 0.575007 | 7_4:-40748451 | None:intergenic |
| TTAAGGAAGTGGCGATCTGA+CGG | 0.579749 | 7_4:+40749140 | Msa1153730:CDS |
| AGAAGTTCAAACCTGCAAGA+AGG | 0.580057 | 7_4:+40749052 | Msa1153730:CDS |
| AGGCATAGAACATTCCTTCA+CGG | 0.582187 | 7_4:-40748346 | None:intergenic |
| CCTTGAAGAAGCTCTACAAA+GGG | 0.582325 | 7_4:+40749076 | Msa1153730:CDS |
| TTTGAAATCAAAGCTGCAGA+AGG | 0.585814 | 7_4:+40748212 | Msa1153730:CDS |
| TAGGCCTCAGCACATTCCCT+AGG | 0.586745 | 7_4:+40749660 | Msa1153730:three_prime_UTR |
| GTGTCATTAGGTCATATGCT+TGG | 0.589947 | 7_4:+40749404 | Msa1153730:CDS |
| CCCTTGAAGAAGCTCTACAA+AGG | 0.590773 | 7_4:+40749075 | Msa1153730:CDS |
| ACGGGTTGAAGAACCTCAGA+CGG | 0.594605 | 7_4:-40748327 | None:intergenic |
| TGAGGTTCTTCAACCCGTGA+AGG | 0.596859 | 7_4:+40748332 | Msa1153730:CDS |
| ACAATGCGTTAATTTCTGCA+AGG | 0.601615 | 7_4:-40748827 | None:intergenic |
| AGAAACCAATGCTGAACTTG+AGG | 0.604096 | 7_4:+40749564 | Msa1153730:CDS |
| AGAAGCTCTACAAAGGGTAG+AGG | 0.607835 | 7_4:+40749082 | Msa1153730:CDS |
| ACTATTTCTCCATGCACCAT+CGG | 0.609425 | 7_4:-40749362 | None:intergenic |
| ACTCTTCTGATGTACTCTCA+TGG | 0.611278 | 7_4:-40748854 | None:intergenic |
| ACGACGTATCAAGCTGAACC+GGG | 0.613614 | 7_4:+40746559 | Msa1153730:CDS |
| AAAACGACAAGAATGAGTGT+TGG | 0.613648 | 7_4:-40746470 | None:intergenic |
| ACTCCATCGATTGAGTTCAA+AGG | 0.615384 | 7_4:+40748647 | Msa1153730:CDS |
| GAAGCTGTTAACCGCTTCGG+TGG | 0.621394 | 7_4:+40746661 | Msa1153730:CDS |
| AAACCAATCGAGTCCGTCTG+AGG | 0.623782 | 7_4:+40748314 | Msa1153730:CDS |
| TCTGACTCGTAAAGCTCGAG+AGG | 0.637832 | 7_4:+40748926 | Msa1153730:CDS |
| AGAAGAGTTTGAAGAACCGA+TGG | 0.638252 | 7_4:+40749346 | Msa1153730:CDS |
| AGCACCTAGGGAATGTGCTG+AGG | 0.644735 | 7_4:-40749664 | None:intergenic |
| AGACTGCAAGTGGCAAAAGG+TGG | 0.660399 | 7_4:+40748591 | Msa1153730:CDS |
| CACTTGAGAAAACCCGTGAG+AGG | 0.664946 | 7_4:+40748508 | Msa1153730:CDS |
| TCTGGAGAAGATACATGGGA+AGG | 0.668166 | 7_4:-40748366 | None:intergenic |
| GGTGCATGGAGAAATAGTCT+CGG | 0.669815 | 7_4:+40749367 | Msa1153730:CDS |
| CAAGTCTGGAGAAGATACAT+GGG | 0.676113 | 7_4:-40748370 | None:intergenic |
| GCTTGACAGGGAGAAACTAG+AGG | 0.676961 | 7_4:+40748092 | Msa1153730:CDS |
| CCACATAGAAGAGCTTGACA+GGG | 0.677555 | 7_4:+40748080 | Msa1153730:CDS |
| AGTAACCAACACCACCGAAG+CGG | 0.679694 | 7_4:-40746672 | None:intergenic |
| AGTCTCGGTGAAACAGCAGA+AGG | 0.690368 | 7_4:+40749382 | Msa1153730:CDS |
| AGAGTGTATGCAGAAGCGCG+AGG | 0.725141 | 7_4:+40748872 | Msa1153730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+GGG | - | chr7_4:40746781-40746800 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr7_4:40746782-40746801 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr7_4:40746781-40746800 | Msa1153730:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr7_4:40746782-40746801 | Msa1153730:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr7_4:40746781-40746800 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr7_4:40746782-40746801 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATGG+GGG | - | chr7_4:40746779-40746798 | None:intergenic | 10.0% |
| !!! | AATCTAATTTTTGATATATA+TGG | - | chr7_4:40747598-40747617 | None:intergenic | 10.0% |
| !!! | AATTTTGTTTTCAAAATTTT+GGG | + | chr7_4:40747755-40747774 | Msa1153730:intron | 10.0% |
| !! | TATATATATATATATATGGG+GGG | - | chr7_4:40746778-40746797 | None:intergenic | 15.0% |
| !!! | AATTGACATTGTTTAATTTT+GGG | - | chr7_4:40747658-40747677 | None:intergenic | 15.0% |
| !!! | CAATTTTGTTTTCAAAATTT+TGG | + | chr7_4:40747754-40747773 | Msa1153730:intron | 15.0% |
| !!! | ATTTTGTTTTCAAAATTTTG+GGG | + | chr7_4:40747756-40747775 | Msa1153730:intron | 15.0% |
| !! | ATATATATATATATATGGGG+GGG | - | chr7_4:40746777-40746796 | None:intergenic | 20.0% |
| !! | AAACTATTTATGTGACTAAT+AGG | + | chr7_4:40747109-40747128 | Msa1153730:intron | 20.0% |
| !!! | TAGGTGTTTTTTTTTTTTAC+TGG | + | chr7_4:40747128-40747147 | Msa1153730:intron | 20.0% |
| !!! | TGTAATTTTGATGTCAAATA+TGG | + | chr7_4:40747335-40747354 | Msa1153730:intron | 20.0% |
| !! | ATACAATGTAACTATAAATG+AGG | - | chr7_4:40747482-40747501 | None:intergenic | 20.0% |
| !!! | GAATTGACATTGTTTAATTT+TGG | - | chr7_4:40747659-40747678 | None:intergenic | 20.0% |
| !! | GAAAACAAAATTGATATGTT+TGG | - | chr7_4:40747747-40747766 | None:intergenic | 20.0% |
| !!! | AAAGTATTGGTATAAGATAT+GGG | + | chr7_4:40747802-40747821 | Msa1153730:intron | 20.0% |
| !! | ATAAGAAATTAGAGAAAGAA+AGG | + | chr7_4:40748481-40748500 | Msa1153730:CDS | 20.0% |
| !!! | TTTTAAAACTTCTGATTTTG+CGG | - | chr7_4:40748700-40748719 | None:intergenic | 20.0% |
| ! | AAAAAAAAGAGAGATAGAAC+AGG | - | chr7_4:40746496-40746515 | None:intergenic | 25.0% |
| ! | TTCAAAGAACAACAACAAAA+TGG | + | chr7_4:40746588-40746607 | Msa1153730:CDS | 25.0% |
| ! | ATAAAAGACACATTCACAAA+AGG | + | chr7_4:40746977-40746996 | Msa1153730:intron | 25.0% |
| !!! | TAGTGATTTGTTGCATTTTA+TGG | + | chr7_4:40747077-40747096 | Msa1153730:intron | 25.0% |
| ! | ATACATAGAGAAATGATGTT+TGG | + | chr7_4:40747244-40747263 | Msa1153730:intron | 25.0% |
| !! | TGATTTTAGATGAAGAATGT+TGG | + | chr7_4:40747426-40747445 | Msa1153730:intron | 25.0% |
| ! | ATGAAGAATGTTGGAAAATT+TGG | + | chr7_4:40747435-40747454 | Msa1153730:intron | 25.0% |
| ! | TGAAGAATGTTGGAAAATTT+GGG | + | chr7_4:40747436-40747455 | Msa1153730:intron | 25.0% |
| ! | TATAGTTACATTGTATGTGA+AGG | + | chr7_4:40747486-40747505 | Msa1153730:intron | 25.0% |
| ! | CTAACTTAACGTATATAGAA+TGG | - | chr7_4:40747522-40747541 | None:intergenic | 25.0% |
| !! | TGATATGTATCTGAAAGTAT+TGG | + | chr7_4:40747789-40747808 | Msa1153730:intron | 25.0% |
| !!! | GAAAGTATTGGTATAAGATA+TGG | + | chr7_4:40747801-40747820 | Msa1153730:intron | 25.0% |
| ! | ATAGTACATTGTTCTTATAG+AGG | + | chr7_4:40747866-40747885 | Msa1153730:intron | 25.0% |
| ! | AAGAATTAGAAAAGACCAAA+AGG | + | chr7_4:40748178-40748197 | Msa1153730:CDS | 25.0% |
| ! | TGTATGAAGTTTAAAAACTC+TGG | + | chr7_4:40749191-40749210 | Msa1153730:CDS | 25.0% |
| !!! | TGATGTAAATGGATTGAATT+TGG | + | chr7_4:40749247-40749266 | Msa1153730:CDS | 25.0% |
| CAAATTCATTCACTTCAAGA+TGG | + | chr7_4:40746516-40746535 | Msa1153730:exon | 30.0% | |
| TTAGAATGAGAAATGAGAGA+TGG | - | chr7_4:40746718-40746737 | None:intergenic | 30.0% | |
| ATCTCTCATTTCTCATTCTA+AGG | + | chr7_4:40746717-40746736 | Msa1153730:CDS | 30.0% | |
| ACACCTTCATAAAAAGTAGT+TGG | + | chr7_4:40746833-40746852 | Msa1153730:intron | 30.0% | |
| !!! | ACACCAACTACTTTTTATGA+AGG | - | chr7_4:40746928-40746947 | None:intergenic | 30.0% |
| !! | GACTATCAAAATTTTGATGC+CGG | + | chr7_4:40747266-40747285 | Msa1153730:intron | 30.0% |
| GCAAATTCGATTATACATTC+CGG | - | chr7_4:40747288-40747307 | None:intergenic | 30.0% | |
| TGAGCTATATAGTAAGTTCT+CGG | + | chr7_4:40748037-40748056 | Msa1153730:intron | 30.0% | |
| AAGAACTGATCCTAAAAGAA+AGG | + | chr7_4:40748136-40748155 | Msa1153730:CDS | 30.0% | |
| AGAACTGATCCTAAAAGAAA+GGG | + | chr7_4:40748137-40748156 | Msa1153730:CDS | 30.0% | |
| ! | TCTGAAACGATATTGAATCT+CGG | + | chr7_4:40748240-40748259 | Msa1153730:CDS | 30.0% |
| TGTAGATGAGAAAGAAGTAA+AGG | + | chr7_4:40748290-40748309 | Msa1153730:CDS | 30.0% | |
| AATTCCATTAGTATCAAGTC+TGG | - | chr7_4:40748387-40748406 | None:intergenic | 30.0% | |
| !!! | AGTTTTGGTTAGGTTCAATT+TGG | - | chr7_4:40748418-40748437 | None:intergenic | 30.0% |
| !!! | TATCATGAGTAGTTTTGGTT+AGG | - | chr7_4:40748428-40748447 | None:intergenic | 30.0% |
| !! | AATTTTGAGTAAACCTCTCA+CGG | - | chr7_4:40748524-40748543 | None:intergenic | 30.0% |
| !!! | TCTCTTTTTTCTGAAATGCT+CGG | - | chr7_4:40748673-40748692 | None:intergenic | 30.0% |
| TACTGCAACTAACCTAATTT+CGG | - | chr7_4:40748766-40748785 | None:intergenic | 30.0% | |
| ! | AAATTAGGTTAGTTGCAGTA+AGG | + | chr7_4:40748766-40748785 | Msa1153730:CDS | 30.0% |
| !! | GCAGATGGATGTTTTTAAAA+GGG | + | chr7_4:40749013-40749032 | Msa1153730:CDS | 30.0% |
| ATTCGGTTACTTGATGTAAA+TGG | + | chr7_4:40749236-40749255 | Msa1153730:CDS | 30.0% | |
| ATTTGTCCTATTGATAGAGT+CGG | - | chr7_4:40749302-40749321 | None:intergenic | 30.0% | |
| TCTGCTAAGAGAAAGAAATT+TGG | + | chr7_4:40749494-40749513 | Msa1153730:CDS | 30.0% | |
| CTGCTAAGAGAAAGAAATTT+GGG | + | chr7_4:40749495-40749514 | Msa1153730:CDS | 30.0% | |
| GAAATAAAAAACAGCACCTA+GGG | - | chr7_4:40749679-40749698 | None:intergenic | 30.0% | |
| TGAAATAAAAAACAGCACCT+AGG | - | chr7_4:40749680-40749699 | None:intergenic | 30.0% | |
| AAAACGACAAGAATGAGTGT+TGG | - | chr7_4:40746473-40746492 | None:intergenic | 35.0% | |
| ! | TTGTTCTTTGAAGATGAACC+CGG | - | chr7_4:40746580-40746599 | None:intergenic | 35.0% |
| GCTTCTTTCACAGATTCAAA+TGG | - | chr7_4:40746646-40746665 | None:intergenic | 35.0% | |
| AGAGATGGAAGATTGTGAAA+GGG | - | chr7_4:40746703-40746722 | None:intergenic | 35.0% | |
| CACCTTCATAAAAAGTAGTG+TGG | + | chr7_4:40746834-40746853 | Msa1153730:intron | 35.0% | |
| !!! | CACCACACTACTTTTTATGA+AGG | - | chr7_4:40746839-40746858 | None:intergenic | 35.0% |
| ! | TTTTATCAAGTCACACCTCA+AGG | + | chr7_4:40746861-40746880 | Msa1153730:intron | 35.0% |
| AAAGTGAAAATCACACCTTG+AGG | - | chr7_4:40746879-40746898 | None:intergenic | 35.0% | |
| ! | TGTTGCTATTATTGAGTGCT+AGG | + | chr7_4:40747198-40747217 | Msa1153730:intron | 35.0% |
| ! | GTTGCTATTATTGAGTGCTA+GGG | + | chr7_4:40747199-40747218 | Msa1153730:intron | 35.0% |
| !!! | TATTGAGTGCTAGGGTTTTT+TGG | + | chr7_4:40747207-40747226 | Msa1153730:intron | 35.0% |
| TGTGTGTAAATTGTCACGTA+CGG | + | chr7_4:40747372-40747391 | Msa1153730:intron | 35.0% | |
| TGTTGGAAAATTTGGGAAGT+AGG | + | chr7_4:40747443-40747462 | Msa1153730:intron | 35.0% | |
| ACATCTGTGACATACATACT+AGG | - | chr7_4:40747626-40747645 | None:intergenic | 35.0% | |
| ! | ATCCTAAAGTATCATCGAAG+AGG | + | chr7_4:40747717-40747736 | Msa1153730:intron | 35.0% |
| AGGACAGTTGATCTTAAATG+GGG | - | chr7_4:40747957-40747976 | None:intergenic | 35.0% | |
| CAGGACAGTTGATCTTAAAT+GGG | - | chr7_4:40747958-40747977 | None:intergenic | 35.0% | |
| TCAGGACAGTTGATCTTAAA+TGG | - | chr7_4:40747959-40747978 | None:intergenic | 35.0% | |
| ! | CAAGAGTTTCCCTTTCTTTT+AGG | - | chr7_4:40748149-40748168 | None:intergenic | 35.0% |
| ! | CAAATCTTCAACAAGCCTTT+TGG | - | chr7_4:40748196-40748215 | None:intergenic | 35.0% |
| ! | TTTGAAATCAAAGCTGCAGA+AGG | + | chr7_4:40748212-40748231 | Msa1153730:CDS | 35.0% |
| CTGAAACGATATTGAATCTC+GGG | + | chr7_4:40748241-40748260 | Msa1153730:CDS | 35.0% | |
| TTCTCCAGACTTGATACTAA+TGG | + | chr7_4:40748380-40748399 | Msa1153730:CDS | 35.0% | |
| GATACTAATGGAATTGAAGC+AGG | + | chr7_4:40748392-40748411 | Msa1153730:CDS | 35.0% | |
| ! | GGCAATATCATGAGTAGTTT+TGG | - | chr7_4:40748433-40748452 | None:intergenic | 35.0% |
| !! | ATTTTGAGTAAACCTCTCAC+GGG | - | chr7_4:40748523-40748542 | None:intergenic | 35.0% |
| AGTTCTGCTGTAACATCTAA+AGG | - | chr7_4:40748630-40748649 | None:intergenic | 35.0% | |
| TGATAAGAACTGCCGAAATT+AGG | + | chr7_4:40748751-40748770 | Msa1153730:CDS | 35.0% | |
| AGTTGCAGTAAGGAAAATGA+AGG | + | chr7_4:40748776-40748795 | Msa1153730:CDS | 35.0% | |
| CAATGCGTTAATTTCTGCAA+GGG | - | chr7_4:40748829-40748848 | None:intergenic | 35.0% | |
| ACAATGCGTTAATTTCTGCA+AGG | - | chr7_4:40748830-40748849 | None:intergenic | 35.0% | |
| !! | CGCAGATGGATGTTTTTAAA+AGG | + | chr7_4:40749012-40749031 | Msa1153730:CDS | 35.0% |
| !! | GGATGTTTTTAAAAGGGTAG+AGG | + | chr7_4:40749019-40749038 | Msa1153730:CDS | 35.0% |
| TAGAAGTTGAAGAGGCTTTA+AGG | + | chr7_4:40749123-40749142 | Msa1153730:CDS | 35.0% | |
| ATATCTCTCCTATGATCAGA+TGG | - | chr7_4:40749218-40749237 | None:intergenic | 35.0% | |
| CTGATCATAGGAGAGATATT+CGG | + | chr7_4:40749219-40749238 | Msa1153730:CDS | 35.0% | |
| ! | TTAAAGCCGACTCTATCAAT+AGG | + | chr7_4:40749293-40749312 | Msa1153730:CDS | 35.0% |
| GAGCAAACTGAGAAAGAAAA+TGG | + | chr7_4:40749455-40749474 | Msa1153730:CDS | 35.0% | |
| !! | GAATGAGTGTTGGAGTGTTT+GGG | - | chr7_4:40746463-40746482 | None:intergenic | 40.0% |
| !! | AGAATGAGTGTTGGAGTGTT+TGG | - | chr7_4:40746464-40746483 | None:intergenic | 40.0% |
| ! | TGGAGCTGAAGTATCAATCT+CGG | - | chr7_4:40746626-40746645 | None:intergenic | 40.0% |
| AAAGAAGCTGTTAACCGCTT+CGG | + | chr7_4:40746658-40746677 | Msa1153730:CDS | 40.0% | |
| GAGAGATGGAAGATTGTGAA+AGG | - | chr7_4:40746704-40746723 | None:intergenic | 40.0% | |
| CACCTCTTCGATGATACTTT+AGG | - | chr7_4:40747722-40747741 | None:intergenic | 40.0% | |
| !! | AGGACAATGTAGCTTTGTGA+TGG | - | chr7_4:40747927-40747946 | None:intergenic | 40.0% |
| ! | ATCTTAAATGGGGGTGTAGA+AGG | - | chr7_4:40747947-40747966 | None:intergenic | 40.0% |
| GGACAGTTGATCTTAAATGG+GGG | - | chr7_4:40747956-40747975 | None:intergenic | 40.0% | |
| GATCAACTGTCCTGAAAATC+TGG | + | chr7_4:40747964-40747983 | Msa1153730:intron | 40.0% | |
| ! | AGTTGCTATGCCAGATTTTC+AGG | - | chr7_4:40747977-40747996 | None:intergenic | 40.0% |
| AGGCATAGAACATTCCTTCA+CGG | - | chr7_4:40748349-40748368 | None:intergenic | 40.0% | |
| CAAGTCTGGAGAAGATACAT+GGG | - | chr7_4:40748373-40748392 | None:intergenic | 40.0% | |
| TCAAGTCTGGAGAAGATACA+TGG | - | chr7_4:40748374-40748393 | None:intergenic | 40.0% | |
| TTCAACAGTAGCTCGTACAT+CGG | - | chr7_4:40748454-40748473 | None:intergenic | 40.0% | |
| CTTGCAGTCTTAATCTGGTT+TGG | - | chr7_4:40748581-40748600 | None:intergenic | 40.0% | |
| AACCAGATTAAGACTGCAAG+TGG | + | chr7_4:40748581-40748600 | Msa1153730:CDS | 40.0% | |
| TTAAGACTGCAAGTGGCAAA+AGG | + | chr7_4:40748588-40748607 | Msa1153730:CDS | 40.0% | |
| ! | ACTCCATCGATTGAGTTCAA+AGG | + | chr7_4:40748647-40748666 | Msa1153730:CDS | 40.0% |
| ACTCTTCTGATGTACTCTCA+TGG | - | chr7_4:40748857-40748876 | None:intergenic | 40.0% | |
| GGAAATCACTCTTTCAGTTG+AGG | + | chr7_4:40748893-40748912 | Msa1153730:CDS | 40.0% | |
| TGAAGCAAATTCTTCGCAGA+TGG | + | chr7_4:40748998-40749017 | Msa1153730:CDS | 40.0% | |
| AGAAGTTCAAACCTGCAAGA+AGG | + | chr7_4:40749052-40749071 | Msa1153730:CDS | 40.0% | |
| CCTTTGTAGAGCTTCTTCAA+GGG | - | chr7_4:40749078-40749097 | None:intergenic | 40.0% | |
| CCTTGAAGAAGCTCTACAAA+GGG | + | chr7_4:40749076-40749095 | Msa1153730:CDS | 40.0% | |
| AGGGAAGTTAGAAGTTGAAG+AGG | + | chr7_4:40749115-40749134 | Msa1153730:CDS | 40.0% | |
| !! | TTGAAGAGGCTTTAAGGAAG+TGG | + | chr7_4:40749129-40749148 | Msa1153730:CDS | 40.0% |
| !! | GATAGAGTCGGCTTTAAAAC+AGG | - | chr7_4:40749290-40749309 | None:intergenic | 40.0% |
| CAATAGGACAAATACTGAGC+AGG | + | chr7_4:40749309-40749328 | Msa1153730:CDS | 40.0% | |
| ! | ATCGGTTCTTCAAACTCTTC+TGG | - | chr7_4:40749347-40749366 | None:intergenic | 40.0% |
| AGAAGAGTTTGAAGAACCGA+TGG | + | chr7_4:40749346-40749365 | Msa1153730:CDS | 40.0% | |
| ! | ACTATTTCTCCATGCACCAT+CGG | - | chr7_4:40749365-40749384 | None:intergenic | 40.0% |
| !! | AAACAGCAGAAGGTGTCATT+AGG | + | chr7_4:40749392-40749411 | Msa1153730:CDS | 40.0% |
| ! | GTGTCATTAGGTCATATGCT+TGG | + | chr7_4:40749404-40749423 | Msa1153730:CDS | 40.0% |
| ! | TCAGTTTGCTCGTCAAACAA+TGG | - | chr7_4:40749446-40749465 | None:intergenic | 40.0% |
| AGAAACCAATGCTGAACTTG+AGG | + | chr7_4:40749564-40749583 | Msa1153730:CDS | 40.0% | |
| ATTCACCTCAAGTTCAGCAT+TGG | - | chr7_4:40749572-40749591 | None:intergenic | 40.0% | |
| TAGCTCTTGTCATTGCTAGA+TGG | - | chr7_4:40749617-40749636 | None:intergenic | 40.0% | |
| CAAAAGTAGCGTCTCCTATT+AGG | + | chr7_4:40749641-40749660 | Msa1153730:three_prime_UTR | 40.0% | |
| ACCACATAGAAGAGCTTGAC+AGG | + | chr7_4:40748079-40748098 | Msa1153730:CDS | 45.0% | |
| CCACATAGAAGAGCTTGACA+GGG | + | chr7_4:40748080-40748099 | Msa1153730:CDS | 45.0% | |
| GGCATAGAACATTCCTTCAC+GGG | - | chr7_4:40748348-40748367 | None:intergenic | 45.0% | |
| TCTGGAGAAGATACATGGGA+AGG | - | chr7_4:40748369-40748388 | None:intergenic | 45.0% | |
| ! | TGCCACTTGCAGTCTTAATC+TGG | - | chr7_4:40748586-40748605 | None:intergenic | 45.0% |
| CCCTTGAAGAAGCTCTACAA+AGG | + | chr7_4:40749075-40749094 | Msa1153730:CDS | 45.0% | |
| CCCTTTGTAGAGCTTCTTCA+AGG | - | chr7_4:40749079-40749098 | None:intergenic | 45.0% | |
| AGAAGCTCTACAAAGGGTAG+AGG | + | chr7_4:40749082-40749101 | Msa1153730:CDS | 45.0% | |
| TTAAGGAAGTGGCGATCTGA+CGG | + | chr7_4:40749140-40749159 | Msa1153730:CDS | 45.0% | |
| ACTCTGGTCCATCTGATCAT+AGG | + | chr7_4:40749207-40749226 | Msa1153730:CDS | 45.0% | |
| !! | AGTCGGCTTTAAAACAGGCT+TGG | - | chr7_4:40749285-40749304 | None:intergenic | 45.0% |
| TTTGAAGAACCGATGGTGCA+TGG | + | chr7_4:40749353-40749372 | Msa1153730:CDS | 45.0% | |
| GGTGCATGGAGAAATAGTCT+CGG | + | chr7_4:40749367-40749386 | Msa1153730:CDS | 45.0% | |
| !! | TATATATATATATATATATG+GGG | - | chr7_4:40747037-40747056 | None:intergenic | 5.0% |
| GACGACGTATCAAGCTGAAC+CGG | + | chr7_4:40746558-40746577 | Msa1153730:CDS | 50.0% | |
| ACGACGTATCAAGCTGAACC+GGG | + | chr7_4:40746559-40746578 | Msa1153730:CDS | 50.0% | |
| AGTAACCAACACCACCGAAG+CGG | - | chr7_4:40746675-40746694 | None:intergenic | 50.0% | |
| CCCTGTCAAGCTCTTCTATG+TGG | - | chr7_4:40748083-40748102 | None:intergenic | 50.0% | |
| GCTTGACAGGGAGAAACTAG+AGG | + | chr7_4:40748092-40748111 | Msa1153730:CDS | 50.0% | |
| AAACCAATCGAGTCCGTCTG+AGG | + | chr7_4:40748314-40748333 | Msa1153730:CDS | 50.0% | |
| ! | ACGGGTTGAAGAACCTCAGA+CGG | - | chr7_4:40748330-40748349 | None:intergenic | 50.0% |
| TGAGGTTCTTCAACCCGTGA+AGG | + | chr7_4:40748332-40748351 | Msa1153730:CDS | 50.0% | |
| CACTTGAGAAAACCCGTGAG+AGG | + | chr7_4:40748508-40748527 | Msa1153730:CDS | 50.0% | |
| AGACTGCAAGTGGCAAAAGG+TGG | + | chr7_4:40748591-40748610 | Msa1153730:CDS | 50.0% | |
| CGGCCTTTGAACTCAATCGA+TGG | - | chr7_4:40748653-40748672 | None:intergenic | 50.0% | |
| ! | TCTGACTCGTAAAGCTCGAG+AGG | + | chr7_4:40748926-40748945 | Msa1153730:CDS | 50.0% |
| TTCTTCAAGGGCCTTCTTGC+AGG | - | chr7_4:40749066-40749085 | None:intergenic | 50.0% | |
| GGCGATCTGACGGTCAAAAA+AGG | + | chr7_4:40749150-40749169 | Msa1153730:CDS | 50.0% | |
| AGTCTCGGTGAAACAGCAGA+AGG | + | chr7_4:40749382-40749401 | Msa1153730:CDS | 50.0% | |
| GGAATGTGCTGAGGCCTAAT+AGG | - | chr7_4:40749658-40749677 | None:intergenic | 50.0% | |
| GAAGCTGTTAACCGCTTCGG+TGG | + | chr7_4:40746661-40746680 | Msa1153730:CDS | 55.0% | |
| GTTAACCGCTTCGGTGGTGT+TGG | + | chr7_4:40746667-40746686 | Msa1153730:CDS | 55.0% | |
| !! | GCTTCGGTGGTGTTGGTTAC+TGG | + | chr7_4:40746674-40746693 | Msa1153730:CDS | 55.0% |
| CAGGGAGAAACTAGAGGAGC+AGG | + | chr7_4:40748098-40748117 | Msa1153730:CDS | 55.0% | |
| ! | GAACCTCAGACGGACTCGAT+TGG | - | chr7_4:40748320-40748339 | None:intergenic | 55.0% |
| GTGGCAAAAGGTGGTGCTTC+TGG | + | chr7_4:40748600-40748619 | Msa1153730:CDS | 55.0% | |
| ! | AGAGTGTATGCAGAAGCGCG+AGG | + | chr7_4:40748872-40748891 | Msa1153730:CDS | 55.0% |
| TCGTAAAGCTCGAGAGGCAG+AGG | + | chr7_4:40748932-40748951 | Msa1153730:CDS | 55.0% | |
| AGGGTAGAGGCTGCAGATAG+AGG | + | chr7_4:40749095-40749114 | Msa1153730:CDS | 55.0% | |
| GGGTAGAGGCTGCAGATAGA+GGG | + | chr7_4:40749096-40749115 | Msa1153730:CDS | 55.0% | |
| TAGGCCTCAGCACATTCCCT+AGG | + | chr7_4:40749660-40749679 | Msa1153730:three_prime_UTR | 55.0% | |
| AGCACCTAGGGAATGTGCTG+AGG | - | chr7_4:40749667-40749686 | None:intergenic | 55.0% | |
| ! | AGAGGAGCAGGCAAGAGCGT+TGG | + | chr7_4:40748110-40748129 | Msa1153730:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 40746460 | 40749733 | 40746460 | ID=Msa1153730;Name=Msa1153730 |
| chr7_4 | mRNA | 40746460 | 40749733 | 40746460 | ID=Msa1153730-mRNA-1;Parent=Msa1153730;Name=Msa1153730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=75|1|1|1|1|1|2|144|571 |
| chr7_4 | exon | 40746460 | 40746738 | 40746460 | ID=Msa1153730-mRNA-1:exon:9848;Parent=Msa1153730-mRNA-1 |
| chr7_4 | exon | 40748078 | 40749733 | 40748078 | ID=Msa1153730-mRNA-1:exon:9849;Parent=Msa1153730-mRNA-1 |
| chr7_4 | five_prime_UTR | 40746460 | 40746534 | 40746460 | ID=Msa1153730-mRNA-1:five_prime_utr;Parent=Msa1153730-mRNA-1 |
| chr7_4 | CDS | 40746535 | 40746738 | 40746535 | ID=Msa1153730-mRNA-1:cds;Parent=Msa1153730-mRNA-1 |
| chr7_4 | CDS | 40748078 | 40749589 | 40748078 | ID=Msa1153730-mRNA-1:cds;Parent=Msa1153730-mRNA-1 |
| chr7_4 | three_prime_UTR | 40749590 | 40749733 | 40749590 | ID=Msa1153730-mRNA-1:three_prime_utr;Parent=Msa1153730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
