Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066060 | GAU19045.1 | 54.930 | 71 | 31 | 1 | 42 | 111 | 1 | 71 | 3.41e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066060 | A0A2Z6MS45 | 54.930 | 71 | 31 | 1 | 42 | 111 | 1 | 71 | 1.63e-15 | 78.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608470 | Msa1066060 | 0.902806 | 6.647420e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066060 | MtrunA17_Chr6g0469811 | 50.943 | 53 | 26 | 0 | 43 | 95 | 11 | 63 | 2.52e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAGATTAAATTTGAATTC+AGG | 0.221235 | 7_2:+60006535 | None:intergenic |
| CTTTAAATACCTGCATCTTC+TGG | 0.293662 | 7_2:-60006460 | Msa1066060:five_prime_UTR |
| CAGGTAGAACTCGGCAAAAC+TGG | 0.308473 | 7_2:+60006795 | None:intergenic |
| GAGAACCATCTCTATGGAAT+TGG | 0.309307 | 7_2:+60006196 | None:intergenic |
| AATCTGCTTTGTCTGCGTTT+TGG | 0.336058 | 7_2:-60006520 | Msa1066060:five_prime_UTR |
| GGTATTTAAAGACCTCAATA+AGG | 0.345344 | 7_2:+60006472 | None:intergenic |
| TTCAACTTTCAATTCAATAT+CGG | 0.365155 | 7_2:-60006378 | Msa1066060:CDS |
| ATCAATGAGAACCATCTCTA+TGG | 0.370825 | 7_2:+60006190 | None:intergenic |
| ACCTCAATAAGGGGCAAAAC+AGG | 0.374630 | 7_2:+60006483 | None:intergenic |
| AGGGATGTTTGTGGGTAGAC+AGG | 0.400798 | 7_2:-60006644 | Msa1066060:five_prime_UTR |
| TTTGTCCTTATGTGCTGAAT+CGG | 0.403946 | 7_2:-60006675 | Msa1066060:five_prime_UTR |
| ATTGGAGTTAGATCTTCTAT+TGG | 0.408232 | 7_2:-60006619 | Msa1066060:five_prime_UTR |
| GCAGATTAAATTTGAATTCA+GGG | 0.410557 | 7_2:+60006536 | None:intergenic |
| TTGCTCCGATTCAGCACATA+AGG | 0.415150 | 7_2:+60006670 | None:intergenic |
| TTTGTGGGTAGACAGGATAT+TGG | 0.421993 | 7_2:-60006637 | Msa1066060:five_prime_UTR |
| AGGTAAGGGTTCTGAGGTTG+TGG | 0.428800 | 7_2:-60006250 | Msa1066060:CDS |
| TCTATGGAATTGGGCTGCTC+AGG | 0.436111 | 7_2:+60006206 | None:intergenic |
| AAAATCTTAAAGCATAAATT+CGG | 0.442347 | 7_2:+60003256 | None:intergenic |
| TGCGATTTGAGTTTGTTGTT+TGG | 0.443946 | 7_2:-60006353 | Msa1066060:CDS |
| CACGGTCCCACTGGAATTTG+AGG | 0.444055 | 7_2:+60006767 | None:intergenic |
| GATGGTTCTCATTGATGATA+AGG | 0.446818 | 7_2:-60006183 | Msa1066060:intron |
| TATCACCTGGTAGGGAGAAA+TGG | 0.447319 | 7_2:-60006280 | Msa1066060:CDS |
| AAGCGGAAGTTCAGATTAGA+AGG | 0.455134 | 7_2:+60006735 | None:intergenic |
| ACTGGAATTTGAGGATGAAC+AGG | 0.462155 | 7_2:+60006776 | None:intergenic |
| AGAACCATCTCTATGGAATT+GGG | 0.470154 | 7_2:+60006197 | None:intergenic |
| AGAAATGGTGGCTTAAGGTA+AGG | 0.470561 | 7_2:-60006265 | Msa1066060:CDS |
| TTGTTGCAAAATACTTCTAG+TGG | 0.474912 | 7_2:-60006862 | Msa1066060:five_prime_UTR |
| GTATTTAAAGACCTCAATAA+GGG | 0.475314 | 7_2:+60006473 | None:intergenic |
| TGCTCAGGATTCAAGAAGCT+TGG | 0.480765 | 7_2:+60006221 | None:intergenic |
| GGTAAGGGTTCTGAGGTTGT+GGG | 0.499506 | 7_2:-60006249 | Msa1066060:CDS |
| AGCAAAAGAGGGATGTTTGT+GGG | 0.508721 | 7_2:-60006652 | Msa1066060:five_prime_UTR |
| AGCCACCATTTCTCCCTACC+AGG | 0.509535 | 7_2:+60006275 | None:intergenic |
| TAGAAGAAACACGGTCCCAC+TGG | 0.519859 | 7_2:+60006758 | None:intergenic |
| GGCTTAAGGTAAGGGTTCTG+AGG | 0.522560 | 7_2:-60006256 | Msa1066060:CDS |
| TGTCCGCTGTATCACCTGGT+AGG | 0.525200 | 7_2:-60006289 | Msa1066060:CDS |
| TAGGGAGAAATGGTGGCTTA+AGG | 0.528302 | 7_2:-60006270 | Msa1066060:CDS |
| TGCTGAATCGGAGCAAAAGA+GGG | 0.552067 | 7_2:-60006663 | Msa1066060:five_prime_UTR |
| CGCTTGCATCAGATCGAGGA+TGG | 0.552499 | 7_2:-60006717 | Msa1066060:five_prime_UTR |
| TCGAGGATGGCGTGCATGAG+TGG | 0.559407 | 7_2:-60006704 | Msa1066060:five_prime_UTR |
| CAGATTAAATTTGAATTCAG+GGG | 0.559780 | 7_2:+60006537 | None:intergenic |
| GAAATGGTGGCTTAAGGTAA+GGG | 0.561830 | 7_2:-60006264 | Msa1066060:CDS |
| GAGCAAAAGAGGGATGTTTG+TGG | 0.563258 | 7_2:-60006653 | Msa1066060:five_prime_UTR |
| GTGCTGAATCGGAGCAAAAG+AGG | 0.568080 | 7_2:-60006664 | Msa1066060:five_prime_UTR |
| AAGGGTTCTGAGGTTGTGGG+AGG | 0.577564 | 7_2:-60006246 | Msa1066060:CDS |
| TCAGTGTCCGCTGTATCACC+TGG | 0.580487 | 7_2:-60006293 | Msa1066060:CDS |
| TCACACACGGCTGATTGTAG+TGG | 0.581573 | 7_2:+60006963 | None:intergenic |
| GTCCGCTGTATCACCTGGTA+GGG | 0.583124 | 7_2:-60006288 | Msa1066060:CDS |
| GTAATTGTAATAGAAGTCAA+AGG | 0.588003 | 7_2:-60006930 | Msa1066060:five_prime_UTR |
| AATTCAAATTGAATCTGCGA+TGG | 0.588162 | 7_2:-60006573 | Msa1066060:five_prime_UTR |
| CGACAACGAATGTGCAACAA+TGG | 0.588208 | 7_2:+60003292 | None:intergenic |
| AGATTAAATTTGAATTCAGG+GGG | 0.603058 | 7_2:+60006538 | None:intergenic |
| ATACATCAACCAGAAGATGC+AGG | 0.612362 | 7_2:+60006451 | None:intergenic |
| GCAGCCCAATTCCATAGAGA+TGG | 0.623094 | 7_2:-60006201 | Msa1066060:CDS |
| CTTCCGCTTGCATCAGATCG+AGG | 0.627153 | 7_2:-60006721 | Msa1066060:five_prime_UTR |
| CATCCTCGATCTGATGCAAG+CGG | 0.631963 | 7_2:+60006718 | None:intergenic |
| GAGGATGAACAGGTAGAACT+CGG | 0.634194 | 7_2:+60006786 | None:intergenic |
| TACTGTTCAAATCTCACACA+CGG | 0.647726 | 7_2:+60006950 | None:intergenic |
| TATTTAAAGACCTCAATAAG+GGG | 0.658099 | 7_2:+60006474 | None:intergenic |
| TGTTCATCCTCAAATTCCAG+TGG | 0.662868 | 7_2:-60006774 | Msa1066060:five_prime_UTR |
| CACCTGGTAGGGAGAAATGG+TGG | 0.663854 | 7_2:-60006277 | Msa1066060:CDS |
| GTTCATCCTCAAATTCCAGT+GGG | 0.665760 | 7_2:-60006773 | Msa1066060:five_prime_UTR |
| CTCCCTACCAGGTGATACAG+CGG | 0.675902 | 7_2:+60006286 | None:intergenic |
| ATTAGAAGGTAGAAGAAACA+CGG | 0.691538 | 7_2:+60006749 | None:intergenic |
| TGTGCAACAATGGTGCATTG+TGG | 0.734291 | 7_2:+60003302 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTAAAAAAAAATATTA+AGG | + | chr7_2:60005789-60005808 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTGATTAAAATGA+TGG | - | chr7_2:60004905-60004924 | Msa1066060:intron | 10.0% |
| !!! | TTATTGTTATTATTTTGTTT+GGG | + | chr7_2:60005119-60005138 | None:intergenic | 10.0% |
| !!! | ATTATTGTTATTATTTTGTT+TGG | + | chr7_2:60005120-60005139 | None:intergenic | 10.0% |
| !! | AATATTAATATAAATGGAAA+AGG | - | chr7_2:60005476-60005495 | Msa1066060:intron | 10.0% |
| !! | AAATATTCGTAAAAAAAATT+AGG | + | chr7_2:60005726-60005745 | None:intergenic | 10.0% |
| !!! | TTATTCTATTAGTTTTTTTT+TGG | - | chr7_2:60006282-60006301 | Msa1066060:CDS | 10.0% |
| !! | TAAAAAATCGTAATTAACAT+GGG | + | chr7_2:60004266-60004285 | None:intergenic | 15.0% |
| !! | TTAAAAAATCGTAATTAACA+TGG | + | chr7_2:60004267-60004286 | None:intergenic | 15.0% |
| !! | AAATTTGTAGAATGAAAATA+AGG | + | chr7_2:60004324-60004343 | None:intergenic | 15.0% |
| !!! | TGAGGTTTATTTTATTAATA+GGG | + | chr7_2:60004512-60004531 | None:intergenic | 15.0% |
| !!! | ATGAGGTTTATTTTATTAAT+AGG | + | chr7_2:60004513-60004532 | None:intergenic | 15.0% |
| !! | ACTGACAATATTAATATAAA+TGG | - | chr7_2:60005470-60005489 | Msa1066060:intron | 15.0% |
| !! | ATGTTATAAATCAAAGTAAA+AGG | - | chr7_2:60005606-60005625 | Msa1066060:intron | 15.0% |
| !! | AATAACTAAAATATGTTCAA+TGG | + | chr7_2:60005649-60005668 | None:intergenic | 15.0% |
| !!! | ATGAAATTTTTTAATGAGAA+GGG | + | chr7_2:60006070-60006089 | None:intergenic | 15.0% |
| !!! | TAAAAAATTTCATGTTTTCA+AGG | - | chr7_2:60006077-60006096 | Msa1066060:intron | 15.0% |
| !! | AAAAACTAATAGAATAAAAC+TGG | + | chr7_2:60006279-60006298 | None:intergenic | 15.0% |
| !! | TTCAACTTTCAATTCAATAT+CGG | - | chr7_2:60003874-60003893 | Msa1066060:intron | 20.0% |
| !!! | GATTTTATTAGTTTATCACT+TGG | - | chr7_2:60004123-60004142 | Msa1066060:intron | 20.0% |
| !! | ATGAAACAAATACAAATGAA+AGG | + | chr7_2:60004398-60004417 | None:intergenic | 20.0% |
| !!! | GAGGTTTATTTTATTAATAG+GGG | + | chr7_2:60004511-60004530 | None:intergenic | 20.0% |
| !!! | ATCACAAGATAATTTGTTAA+GGG | - | chr7_2:60004690-60004709 | Msa1066060:intron | 20.0% |
| !!! | TTTTTGATTAAAATGATGGA+TGG | - | chr7_2:60004909-60004928 | Msa1066060:intron | 20.0% |
| !! | ATTATAATACTTGATAGATC+AGG | + | chr7_2:60005507-60005526 | None:intergenic | 20.0% |
| !!! | GTTATTTTAAAGAGATCAAT+AGG | - | chr7_2:60005663-60005682 | Msa1066060:intron | 20.0% |
| !!! | ATTAAGGTTACATATGTTTT+TGG | + | chr7_2:60005773-60005792 | None:intergenic | 20.0% |
| !!! | ATAGATTTGATTTTGTAAAG+TGG | + | chr7_2:60006016-60006035 | None:intergenic | 20.0% |
| !!! | CATGAAATTTTTTAATGAGA+AGG | + | chr7_2:60006071-60006090 | None:intergenic | 20.0% |
| !!! | TATCATTAATTTTGATGAGT+TGG | - | chr7_2:60006159-60006178 | Msa1066060:intron | 20.0% |
| !!! | ATCATTAATTTTGATGAGTT+GGG | - | chr7_2:60006160-60006179 | Msa1066060:intron | 20.0% |
| ! | GTAATTGTAATAGAAGTCAA+AGG | - | chr7_2:60003322-60003341 | Msa1066060:CDS | 25.0% |
| ! | AGATTAAATTTGAATTCAGG+GGG | + | chr7_2:60003717-60003736 | None:intergenic | 25.0% |
| ! | CAGATTAAATTTGAATTCAG+GGG | + | chr7_2:60003718-60003737 | None:intergenic | 25.0% |
| ! | GCAGATTAAATTTGAATTCA+GGG | + | chr7_2:60003719-60003738 | None:intergenic | 25.0% |
| ! | AGCAGATTAAATTTGAATTC+AGG | + | chr7_2:60003720-60003739 | None:intergenic | 25.0% |
| ! | TATTTAAAGACCTCAATAAG+GGG | + | chr7_2:60003781-60003800 | None:intergenic | 25.0% |
| ! | GTATTTAAAGACCTCAATAA+GGG | + | chr7_2:60003782-60003801 | None:intergenic | 25.0% |
| ! | TAAAAGCTTACATTACAATG+AGG | - | chr7_2:60004428-60004447 | Msa1066060:intron | 25.0% |
| ! | CTATGTTATCTCAAATAATG+AGG | + | chr7_2:60004530-60004549 | None:intergenic | 25.0% |
| !! | CATTATTTGAGATAACATAG+TGG | - | chr7_2:60004530-60004549 | Msa1066060:intron | 25.0% |
| ! | ATTTAATGCCAAAAATCCAA+GGG | - | chr7_2:60004573-60004592 | Msa1066060:intron | 25.0% |
| !!! | CATCACAAGATAATTTGTTA+AGG | - | chr7_2:60004689-60004708 | Msa1066060:intron | 25.0% |
| ! | TAAATATTATAGTGGCTACT+TGG | + | chr7_2:60004857-60004876 | None:intergenic | 25.0% |
| ! | ACATAATAAGAAATTACTGG+AGG | + | chr7_2:60005010-60005029 | None:intergenic | 25.0% |
| ! | AGCACATAATAAGAAATTAC+TGG | + | chr7_2:60005013-60005032 | None:intergenic | 25.0% |
| !! | TATTTATAGTGTTGCTCATA+AGG | - | chr7_2:60005281-60005300 | Msa1066060:intron | 25.0% |
| ! | AACTACTTTAGCAAATTAAG+AGG | + | chr7_2:60005330-60005349 | None:intergenic | 25.0% |
| ! | GTATACTTTAGCAAATTAAG+AGG | + | chr7_2:60005372-60005391 | None:intergenic | 25.0% |
| !!! | GACATTTTTTTGTTTATTGC+AGG | + | chr7_2:60005420-60005439 | None:intergenic | 25.0% |
| ! | GATATGCATAAGTTATTTGT+AGG | - | chr7_2:60005685-60005704 | Msa1066060:intron | 25.0% |
| ! | TTTATCTCCATCAAATCTAA+CGG | + | chr7_2:60005818-60005837 | None:intergenic | 25.0% |
| !!! | AAATTTCATGTTTTCAAGGA+TGG | - | chr7_2:60006081-60006100 | Msa1066060:intron | 25.0% |
| !!! | AATTTCATGTTTTCAAGGAT+GGG | - | chr7_2:60006082-60006101 | Msa1066060:intron | 25.0% |
| ! | TAGAACAATACCTTAACAAA+AGG | + | chr7_2:60006251-60006270 | None:intergenic | 25.0% |
| ! | ATTACGACATTCATGAAAAT+TGG | + | chr7_2:60006400-60006419 | None:intergenic | 25.0% |
| ! | TACTCTATTTGATATTGTTC+AGG | - | chr7_2:60006487-60006506 | Msa1066060:five_prime_UTR | 25.0% |
| ! | AACATTAGAAACTACAACAA+TGG | + | chr7_2:60006650-60006669 | None:intergenic | 25.0% |
| !! | AGTTTGACTGTTAATTGTTT+TGG | - | chr7_2:60006849-60006868 | Msa1066060:five_prime_UTR | 25.0% |
| TTGTTGCAAAATACTTCTAG+TGG | - | chr7_2:60003390-60003409 | Msa1066060:intron | 30.0% | |
| ATTAGAAGGTAGAAGAAACA+CGG | + | chr7_2:60003506-60003525 | None:intergenic | 30.0% | |
| ATTGGAGTTAGATCTTCTAT+TGG | - | chr7_2:60003633-60003652 | Msa1066060:intron | 30.0% | |
| AATTCAAATTGAATCTGCGA+TGG | - | chr7_2:60003679-60003698 | Msa1066060:intron | 30.0% | |
| GGTATTTAAAGACCTCAATA+AGG | + | chr7_2:60003783-60003802 | None:intergenic | 30.0% | |
| ! | ATTTGCAATTTTCATCTGTG+AGG | - | chr7_2:60003835-60003854 | Msa1066060:intron | 30.0% |
| !! | ATCACTTGGTTCTATGAATT+TGG | - | chr7_2:60004137-60004156 | Msa1066060:intron | 30.0% |
| !! | TCACTTGGTTCTATGAATTT+GGG | - | chr7_2:60004138-60004157 | Msa1066060:intron | 30.0% |
| CAAATAGCAGATAACTGAAA+AGG | - | chr7_2:60004213-60004232 | Msa1066060:intron | 30.0% | |
| AAGCTTATCAAAGTTCAAGA+GGG | + | chr7_2:60004363-60004382 | None:intergenic | 30.0% | |
| ! | TTGTAATGTAAGCTTTTAGC+AGG | + | chr7_2:60004426-60004445 | None:intergenic | 30.0% |
| TTAATAGGGGATTTAGTCTA+GGG | + | chr7_2:60004498-60004517 | None:intergenic | 30.0% | |
| ATTAATAGGGGATTTAGTCT+AGG | + | chr7_2:60004499-60004518 | None:intergenic | 30.0% | |
| !!! | CTTGGATTTTTGGCATTAAA+TGG | + | chr7_2:60004574-60004593 | None:intergenic | 30.0% |
| CATTTAATGCCAAAAATCCA+AGG | - | chr7_2:60004572-60004591 | Msa1066060:intron | 30.0% | |
| ! | TCTGTCACATTAGATTTTCT+GGG | - | chr7_2:60004613-60004632 | Msa1066060:intron | 30.0% |
| TATTAATGATGATAGCCATC+TGG | - | chr7_2:60004934-60004953 | Msa1066060:intron | 30.0% | |
| TACTTTAGCAAATTAAGAGG+TGG | + | chr7_2:60005327-60005346 | None:intergenic | 30.0% | |
| TACTTTAGCAAATTAAGAGG+TGG | + | chr7_2:60005327-60005346 | None:intergenic | 30.0% | |
| AAAGTATACGCTATCAAACA+TGG | - | chr7_2:60005383-60005402 | Msa1066060:intron | 30.0% | |
| TTATTAACCCTTAGAGTTGA+TGG | - | chr7_2:60005744-60005763 | Msa1066060:intron | 30.0% | |
| ! | TATTAACCCTTAGAGTTGAT+GGG | - | chr7_2:60005745-60005764 | Msa1066060:intron | 30.0% |
| ATATTACCCGTTAGATTTGA+TGG | - | chr7_2:60005808-60005827 | Msa1066060:intron | 30.0% | |
| TTATCTCCATCAAATCTAAC+GGG | + | chr7_2:60005817-60005836 | None:intergenic | 30.0% | |
| TAAATATAACGACAGACGAT+AGG | + | chr7_2:60006811-60006830 | None:intergenic | 30.0% | |
| ATCGTCTGTCGTTATATTTA+TGG | - | chr7_2:60006811-60006830 | Msa1066060:five_prime_UTR | 30.0% | |
| TACTGTTCAAATCTCACACA+CGG | + | chr7_2:60003305-60003324 | None:intergenic | 35.0% | |
| TTTGTCCTTATGTGCTGAAT+CGG | - | chr7_2:60003577-60003596 | Msa1066060:intron | 35.0% | |
| CTTTAAATACCTGCATCTTC+TGG | - | chr7_2:60003792-60003811 | Msa1066060:intron | 35.0% | |
| !! | TGCGATTTGAGTTTGTTGTT+TGG | - | chr7_2:60003899-60003918 | Msa1066060:intron | 35.0% |
| AGAACCATCTCTATGGAATT+GGG | + | chr7_2:60004058-60004077 | None:intergenic | 35.0% | |
| ATCAATGAGAACCATCTCTA+TGG | + | chr7_2:60004065-60004084 | None:intergenic | 35.0% | |
| ! | GATGGTTCTCATTGATGATA+AGG | - | chr7_2:60004069-60004088 | Msa1066060:intron | 35.0% |
| GATAACTGAAAAGGAAGAGT+AGG | - | chr7_2:60004222-60004241 | Msa1066060:intron | 35.0% | |
| CAAGCTTATCAAAGTTCAAG+AGG | + | chr7_2:60004364-60004383 | None:intergenic | 35.0% | |
| AGCTTACATTACAATGAGGA+TGG | - | chr7_2:60004432-60004451 | Msa1066060:intron | 35.0% | |
| GCTTACATTACAATGAGGAT+GGG | - | chr7_2:60004433-60004452 | Msa1066060:intron | 35.0% | |
| ! | CTCTGTCACATTAGATTTTC+TGG | - | chr7_2:60004612-60004631 | Msa1066060:intron | 35.0% |
| TCAGAGAATAGCTAAAGCTT+AGG | - | chr7_2:60004725-60004744 | Msa1066060:intron | 35.0% | |
| CAGAGAATAGCTAAAGCTTA+GGG | - | chr7_2:60004726-60004745 | Msa1066060:intron | 35.0% | |
| AAAGCTTAGGGAACAAACTA+TGG | - | chr7_2:60004738-60004757 | Msa1066060:intron | 35.0% | |
| AAGCTTAGGGAACAAACTAT+GGG | - | chr7_2:60004739-60004758 | Msa1066060:intron | 35.0% | |
| GTATCATTATGCTGTTGTAG+TGG | - | chr7_2:60005060-60005079 | Msa1066060:intron | 35.0% | |
| CTAAGCTTCCAACCATTATT+AGG | - | chr7_2:60005160-60005179 | Msa1066060:intron | 35.0% | |
| TTCAATGTTGATGTCACTGT+TGG | + | chr7_2:60005546-60005565 | None:intergenic | 35.0% | |
| !! | ATTAACCCTTAGAGTTGATG+GGG | - | chr7_2:60005746-60005765 | Msa1066060:intron | 35.0% |
| TGAAAGATAAGAAGGAAGGT+GGG | + | chr7_2:60006045-60006064 | None:intergenic | 35.0% | |
| TAGCAGAATAAACACATGCA+AGG | + | chr7_2:60006131-60006150 | None:intergenic | 35.0% | |
| !! | TAATTTTGATGAGTTGGGAG+CGG | - | chr7_2:60006165-60006184 | Msa1066060:intron | 35.0% |
| TGTAGTGTTCTTCCATTGTT+AGG | - | chr7_2:60006208-60006227 | Msa1066060:CDS | 35.0% | |
| TTAACAAAAGGTAATCGTCC+AGG | + | chr7_2:60006239-60006258 | None:intergenic | 35.0% | |
| ! | TGGACGATTACCTTTTGTTA+AGG | - | chr7_2:60006238-60006257 | Msa1066060:CDS | 35.0% |
| GCAACATTCATTATTCTTCG+AGG | + | chr7_2:60006527-60006546 | None:intergenic | 35.0% | |
| !! | AGTTGACTTTTTGTTCGTGT+GGG | - | chr7_2:60006547-60006566 | Msa1066060:five_prime_UTR | 35.0% |
| CAAATTGTGTCGTGATTAGT+TGG | - | chr7_2:60006743-60006762 | Msa1066060:five_prime_UTR | 35.0% | |
| ! | AGACGATAGGAAAGTACAAT+GGG | + | chr7_2:60006798-60006817 | None:intergenic | 35.0% |
| ACTGGAATTTGAGGATGAAC+AGG | + | chr7_2:60003479-60003498 | None:intergenic | 40.0% | |
| TGTTCATCCTCAAATTCCAG+TGG | - | chr7_2:60003478-60003497 | Msa1066060:intron | 40.0% | |
| GTTCATCCTCAAATTCCAGT+GGG | - | chr7_2:60003479-60003498 | Msa1066060:intron | 40.0% | |
| AAGCGGAAGTTCAGATTAGA+AGG | + | chr7_2:60003520-60003539 | None:intergenic | 40.0% | |
| AGCAAAAGAGGGATGTTTGT+GGG | - | chr7_2:60003600-60003619 | Msa1066060:intron | 40.0% | |
| TTTGTGGGTAGACAGGATAT+TGG | - | chr7_2:60003615-60003634 | Msa1066060:intron | 40.0% | |
| ! | AATCTGCTTTGTCTGCGTTT+TGG | - | chr7_2:60003732-60003751 | Msa1066060:intron | 40.0% |
| ATACATCAACCAGAAGATGC+AGG | + | chr7_2:60003804-60003823 | None:intergenic | 40.0% | |
| AGAAATGGTGGCTTAAGGTA+AGG | - | chr7_2:60003987-60004006 | Msa1066060:intron | 40.0% | |
| GAAATGGTGGCTTAAGGTAA+GGG | - | chr7_2:60003988-60004007 | Msa1066060:intron | 40.0% | |
| GAGAACCATCTCTATGGAAT+TGG | + | chr7_2:60004059-60004078 | None:intergenic | 40.0% | |
| GTAGGATATGTCATTGCACT+GGG | + | chr7_2:60004781-60004800 | None:intergenic | 40.0% | |
| AGTAGGATATGTCATTGCAC+TGG | + | chr7_2:60004782-60004801 | None:intergenic | 40.0% | |
| TCTGCAACAAAGCAATCAGT+AGG | + | chr7_2:60004799-60004818 | None:intergenic | 40.0% | |
| CATAAGCAACAACTACCAGA+TGG | + | chr7_2:60004952-60004971 | None:intergenic | 40.0% | |
| ! | CATCTGGTAGTTGTTGCTTA+TGG | - | chr7_2:60004950-60004969 | Msa1066060:intron | 40.0% |
| TGAGCTTCCAATTCCAACAT+GGG | + | chr7_2:60005095-60005114 | None:intergenic | 40.0% | |
| CTTCCAACCATTATTAGGCT+TGG | - | chr7_2:60005165-60005184 | Msa1066060:intron | 40.0% | |
| GTTCCAAGCCTAATAATGGT+TGG | + | chr7_2:60005171-60005190 | None:intergenic | 40.0% | |
| !! | CGAGTAGAGTATTGTGAAAC+TGG | + | chr7_2:60005444-60005463 | None:intergenic | 40.0% |
| TACTGCTCGTTACACTGAAA+TGG | + | chr7_2:60005876-60005895 | None:intergenic | 40.0% | |
| AGCAGTAATTAGACCGTCAA+CGG | - | chr7_2:60005889-60005908 | Msa1066060:intron | 40.0% | |
| ! | CCATTGTTTGTTACCGTTGA+CGG | + | chr7_2:60005905-60005924 | None:intergenic | 40.0% |
| CGTCAACGGTAACAAACAAT+GGG | - | chr7_2:60005903-60005922 | Msa1066060:intron | 40.0% | |
| GGCTATGAACAGTGTTTCAA+CGG | - | chr7_2:60005974-60005993 | Msa1066060:intron | 40.0% | |
| GTGAAAGATAAGAAGGAAGG+TGG | + | chr7_2:60006046-60006065 | None:intergenic | 40.0% | |
| GGTGTGAAAGATAAGAAGGA+AGG | + | chr7_2:60006049-60006068 | None:intergenic | 40.0% | |
| ! | GAAGGGTGTGAAAGATAAGA+AGG | + | chr7_2:60006053-60006072 | None:intergenic | 40.0% |
| AGCGGTCTTTGTAGTGTTAA+TGG | - | chr7_2:60006183-60006202 | Msa1066060:intron | 40.0% | |
| !! | CAGTTGACTTTTTGTTCGTG+TGG | - | chr7_2:60006546-60006565 | Msa1066060:five_prime_UTR | 40.0% |
| !! | GTTGACTTTTTGTTCGTGTG+GGG | - | chr7_2:60006548-60006567 | Msa1066060:five_prime_UTR | 40.0% |
| AACTCTCAGTCACATTCATC+CGG | + | chr7_2:60006579-60006598 | None:intergenic | 40.0% | |
| TGACTGAGAGTTCTTTACAC+TGG | - | chr7_2:60006587-60006606 | Msa1066060:five_prime_UTR | 40.0% | |
| ! | GTGCAATGAAGTATCTTCGA+AGG | + | chr7_2:60006620-60006639 | None:intergenic | 40.0% |
| ! | AGGAAAGTACAATGGGGTTA+CGG | + | chr7_2:60006791-60006810 | None:intergenic | 40.0% |
| ! | GACGATAGGAAAGTACAATG+GGG | + | chr7_2:60006797-60006816 | None:intergenic | 40.0% |
| ! | CAGACGATAGGAAAGTACAA+TGG | + | chr7_2:60006799-60006818 | None:intergenic | 40.0% |
| GAGGATGAACAGGTAGAACT+CGG | + | chr7_2:60003469-60003488 | None:intergenic | 45.0% | |
| TTGCTCCGATTCAGCACATA+AGG | + | chr7_2:60003585-60003604 | None:intergenic | 45.0% | |
| TGCTGAATCGGAGCAAAAGA+GGG | - | chr7_2:60003589-60003608 | Msa1066060:intron | 45.0% | |
| GAGCAAAAGAGGGATGTTTG+TGG | - | chr7_2:60003599-60003618 | Msa1066060:intron | 45.0% | |
| ! | TCCTGTTTTGCCCCTTATTG+AGG | - | chr7_2:60003768-60003787 | Msa1066060:intron | 45.0% |
| ACCTCAATAAGGGGCAAAAC+AGG | + | chr7_2:60003772-60003791 | None:intergenic | 45.0% | |
| TATCACCTGGTAGGGAGAAA+TGG | - | chr7_2:60003972-60003991 | Msa1066060:intron | 45.0% | |
| TAGGGAGAAATGGTGGCTTA+AGG | - | chr7_2:60003982-60004001 | Msa1066060:intron | 45.0% | |
| TGCTCAGGATTCAAGAAGCT+TGG | + | chr7_2:60004034-60004053 | None:intergenic | 45.0% | |
| !! | CAATGAGGATGGGTTGAGTT+TGG | - | chr7_2:60004443-60004462 | Msa1066060:intron | 45.0% |
| TGCCAAAAATCCAAGGGATC+AGG | - | chr7_2:60004579-60004598 | Msa1066060:intron | 45.0% | |
| ! | TGCCTGATCCCTTGGATTTT+TGG | + | chr7_2:60004584-60004603 | None:intergenic | 45.0% |
| ATCCAAGGGATCAGGCAATT+TGG | - | chr7_2:60004587-60004606 | Msa1066060:intron | 45.0% | |
| AACCAAATTGCCTGATCCCT+TGG | + | chr7_2:60004592-60004611 | None:intergenic | 45.0% | |
| CTGGAGGAGATTAACAACTC+TGG | + | chr7_2:60004994-60005013 | None:intergenic | 45.0% | |
| AATTCCAACATGGGATGGCT+CGG | + | chr7_2:60005086-60005105 | None:intergenic | 45.0% | |
| CTTCCAATTCCAACATGGGA+TGG | + | chr7_2:60005091-60005110 | None:intergenic | 45.0% | |
| CTGAGCTTCCAATTCCAACA+TGG | + | chr7_2:60005096-60005115 | None:intergenic | 45.0% | |
| CCTCGTTCCAAGCCTAATAA+TGG | + | chr7_2:60005175-60005194 | None:intergenic | 45.0% | |
| CCATTATTAGGCTTGGAACG+AGG | - | chr7_2:60005172-60005191 | Msa1066060:intron | 45.0% | |
| TTGGTCCCCATCAACTCTAA+GGG | + | chr7_2:60005754-60005773 | None:intergenic | 45.0% | |
| TTTGGTCCCCATCAACTCTA+AGG | + | chr7_2:60005755-60005774 | None:intergenic | 45.0% | |
| TGCTCGTTACACTGAAATGG+TGG | + | chr7_2:60005873-60005892 | None:intergenic | 45.0% | |
| CCGTCAACGGTAACAAACAA+TGG | - | chr7_2:60005902-60005921 | Msa1066060:intron | 45.0% | |
| TGTGCAACAATGGTGCATTG+TGG | + | chr7_2:60006953-60006972 | None:intergenic | 45.0% | |
| CGACAACGAATGTGCAACAA+TGG | + | chr7_2:60006963-60006982 | None:intergenic | 45.0% | |
| !! | AATTAATTTAAATATTATAG+TGG | + | chr7_2:60004865-60004884 | None:intergenic | 5.0% |
| !! | AAATTAAATAATTAAACAAA+CGG | - | chr7_2:60005953-60005972 | Msa1066060:intron | 5.0% |
| !!! | AAATTTTATGTATTAAAAAA+CGG | - | chr7_2:60006362-60006381 | Msa1066060:CDS | 5.0% |
| TCACACACGGCTGATTGTAG+TGG | + | chr7_2:60003292-60003311 | None:intergenic | 50.0% | |
| CAGGTAGAACTCGGCAAAAC+TGG | + | chr7_2:60003460-60003479 | None:intergenic | 50.0% | |
| TAGAAGAAACACGGTCCCAC+TGG | + | chr7_2:60003497-60003516 | None:intergenic | 50.0% | |
| CATCCTCGATCTGATGCAAG+CGG | + | chr7_2:60003537-60003556 | None:intergenic | 50.0% | |
| GTGCTGAATCGGAGCAAAAG+AGG | - | chr7_2:60003588-60003607 | Msa1066060:intron | 50.0% | |
| AGGGATGTTTGTGGGTAGAC+AGG | - | chr7_2:60003608-60003627 | Msa1066060:intron | 50.0% | |
| GGCTTAAGGTAAGGGTTCTG+AGG | - | chr7_2:60003996-60004015 | Msa1066060:intron | 50.0% | |
| !! | AGGTAAGGGTTCTGAGGTTG+TGG | - | chr7_2:60004002-60004021 | Msa1066060:intron | 50.0% |
| !! | GGTAAGGGTTCTGAGGTTGT+GGG | - | chr7_2:60004003-60004022 | Msa1066060:intron | 50.0% |
| TCTATGGAATTGGGCTGCTC+AGG | + | chr7_2:60004049-60004068 | None:intergenic | 50.0% | |
| GCAGCCCAATTCCATAGAGA+TGG | - | chr7_2:60004051-60004070 | Msa1066060:intron | 50.0% | |
| TTATGGCCTTCTCCAGTGCT+AGG | - | chr7_2:60004967-60004986 | Msa1066060:intron | 50.0% | |
| AACAACTCTGGTCCTAGCAC+TGG | + | chr7_2:60004982-60005001 | None:intergenic | 50.0% | |
| GAGCCATCCCATGTTGGAAT+TGG | - | chr7_2:60005085-60005104 | Msa1066060:intron | 50.0% | |
| CATGCAAGGTGAAGCAGAGA+AGG | + | chr7_2:60006117-60006136 | None:intergenic | 50.0% | |
| TTCCATTGTTAGGCTTCGCC+TGG | - | chr7_2:60006218-60006237 | Msa1066060:CDS | 50.0% | |
| TTGTTCGTGTGGGGTTGTAC+CGG | - | chr7_2:60006557-60006576 | Msa1066060:five_prime_UTR | 50.0% | |
| CACGGTCCCACTGGAATTTG+AGG | + | chr7_2:60003488-60003507 | None:intergenic | 55.0% | |
| CTTCCGCTTGCATCAGATCG+AGG | - | chr7_2:60003531-60003550 | Msa1066060:intron | 55.0% | |
| CGCTTGCATCAGATCGAGGA+TGG | - | chr7_2:60003535-60003554 | Msa1066060:intron | 55.0% | |
| TCAGTGTCCGCTGTATCACC+TGG | - | chr7_2:60003959-60003978 | Msa1066060:intron | 55.0% | |
| TGTCCGCTGTATCACCTGGT+AGG | - | chr7_2:60003963-60003982 | Msa1066060:intron | 55.0% | |
| GTCCGCTGTATCACCTGGTA+GGG | - | chr7_2:60003964-60003983 | Msa1066060:intron | 55.0% | |
| CTCCCTACCAGGTGATACAG+CGG | + | chr7_2:60003969-60003988 | None:intergenic | 55.0% | |
| CACCTGGTAGGGAGAAATGG+TGG | - | chr7_2:60003975-60003994 | Msa1066060:intron | 55.0% | |
| AGCCACCATTTCTCCCTACC+AGG | + | chr7_2:60003980-60003999 | None:intergenic | 55.0% | |
| !! | AAGGGTTCTGAGGTTGTGGG+AGG | - | chr7_2:60004006-60004025 | Msa1066060:intron | 55.0% |
| ! | TCTGGTCCTAGCACTGGAGA+AGG | + | chr7_2:60004976-60004995 | None:intergenic | 55.0% |
| GTCCAGGCGAAGCCTAACAA+TGG | + | chr7_2:60006223-60006242 | None:intergenic | 55.0% | |
| TCGAGGATGGCGTGCATGAG+TGG | - | chr7_2:60003548-60003567 | Msa1066060:intron | 60.0% | |
| GTGGCCGAGCCATCCCATGT+TGG | - | chr7_2:60005079-60005098 | Msa1066060:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 60003262 | 60007012 | 60003262 | ID=Msa1066060;Name=Msa1066060 |
| chr7_2 | mRNA | 60003262 | 60007012 | 60003262 | ID=Msa1066060-mRNA-1;Parent=Msa1066060;Name=Msa1066060-mRNA-1;_AED=0.29;_eAED=0.29;_QI=556|0|0.5|0.5|0|0|2|0|119 |
| chr7_2 | exon | 60003262 | 60003348 | 60003262 | ID=Msa1066060-mRNA-1:exon:11680;Parent=Msa1066060-mRNA-1 |
| chr7_2 | exon | 60006184 | 60007012 | 60006184 | ID=Msa1066060-mRNA-1:exon:11679;Parent=Msa1066060-mRNA-1 |
| chr7_2 | five_prime_UTR | 60006457 | 60007012 | 60006457 | ID=Msa1066060-mRNA-1:five_prime_utr;Parent=Msa1066060-mRNA-1 |
| chr7_2 | CDS | 60006184 | 60006456 | 60006184 | ID=Msa1066060-mRNA-1:cds;Parent=Msa1066060-mRNA-1 |
| chr7_2 | CDS | 60003262 | 60003348 | 60003262 | ID=Msa1066060-mRNA-1:cds;Parent=Msa1066060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
