AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1066300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066300 MtrunA17_Chr7g0246961 96.161 547 12 1 1 538 1 547 0.0 1079
Msa1066300 MtrunA17_Chr4g0042701 30.312 320 154 16 2 309 49 311 1.62e-15 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066300 AT1G01920.2 62.000 550 187 6 1 534 3 546 0.0 683
Msa1066300 AT1G01920.1 60.000 575 183 8 1 534 3 571 0.0 671
Msa1066300 AT1G01920.5 62.351 502 172 5 1 486 3 503 0.0 627
Msa1066300 AT1G01920.4 61.876 501 171 5 48 534 8 502 0.0 624
Msa1066300 AT1G01920.3 64.103 429 137 5 5 417 7 434 0.0 555
Msa1066300 AT1G14030.1 25.733 307 157 12 8 301 49 297 2.25e-11 66.6

Find 112 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTGCATTTAAGGTTAA+TGG 0.142609 7_2:-60276948 Msa1066300:intron
CTAGGGCAAATTCAGTATTT+TGG 0.177551 7_2:-60280000 Msa1066300:intron
CTCATTGTCAATTCAGTTCT+TGG 0.200060 7_2:-60276469 Msa1066300:three_prime_UTR
GTCTCCATGTATCTTCTTTC+CGG 0.213446 7_2:-60279198 Msa1066300:intron
GATATGCTTCCAACCACTTT+TGG 0.251963 7_2:-60281413 Msa1066300:CDS
TGGGAGGTTTGCGGTGATTC+TGG 0.254285 7_2:-60277184 Msa1066300:CDS
TCCATTATCCAGCAGAGTTT+TGG 0.254544 7_2:+60277879 None:intergenic
CCCAAAACTCTGCTGGATAA+TGG 0.262041 7_2:-60277880 Msa1066300:CDS
TCCCTTGTTGCCATAACTAA+TGG 0.277594 7_2:+60278966 None:intergenic
CGTACTGTTTGCTATCTTCC+TGG 0.287313 7_2:+60276855 None:intergenic
AAAGTTTCGAGCTTTGCTTC+TGG 0.300512 7_2:+60282475 None:intergenic
TCAACTTCCCATGTTGCTAT+TGG 0.310003 7_2:+60279249 None:intergenic
GATAATTGTCTCTCCCCTTC+AGG 0.314552 7_2:+60277232 None:intergenic
CGAGAAATTTCCATTAGTTA+TGG 0.330983 7_2:-60278976 Msa1066300:CDS
ATGGACCTTGAAGAGCATTC+TGG 0.342337 7_2:-60276929 Msa1066300:CDS
CTGTTCCAGAATGCTCTTCA+AGG 0.349550 7_2:+60276924 None:intergenic
AAGTTTCGAGCTTTGCTTCT+GGG 0.351126 7_2:+60282476 None:intergenic
CTTAATGATGTTGTTATTGA+TGG 0.360965 7_2:-60281572 Msa1066300:CDS
TTCTGTCACATGAAGCTTGT+TGG 0.362729 7_2:-60277256 Msa1066300:intron
CAGTGCAAGGAGACACTGTT+TGG 0.372176 7_2:-60279666 Msa1066300:CDS
TAGATGTCCAGTCAGCAATA+TGG 0.372524 7_2:-60277204 Msa1066300:CDS
TGATTGCTTCTGAAGGATAA+TGG 0.373461 7_2:+60278111 None:intergenic
ACAAAGTTTGCAACTATAGT+TGG 0.373492 7_2:-60277810 Msa1066300:CDS
TGTAGAGCTTTGTTTGAAGA+AGG 0.376043 7_2:-60281613 Msa1066300:CDS
GGAGACACTGTTTGGGTTGA+GGG 0.388987 7_2:-60279658 Msa1066300:CDS
ATATCGTGCAACTCAATTAC+AGG 0.391994 7_2:-60281336 Msa1066300:intron
TCAAACAAAGCTCTACATTC+TGG 0.392356 7_2:+60281619 None:intergenic
AACTTTCTTGCAGTGGCTAC+AGG 0.393679 7_2:-60282458 Msa1066300:intron
TGTGCTGTGTGTAGTTTCCT+TGG 0.398120 7_2:+60279687 None:intergenic
TGGGTTGAGGGTCTTGTCCC+TGG 0.398663 7_2:-60279646 Msa1066300:CDS
TGATGAACATCTTGCATCTC+AGG 0.399499 7_2:+60279935 None:intergenic
AAGTACTGTGATTCCAGAAA+AGG 0.405051 7_2:-60282287 Msa1066300:CDS
CTTCCTGGCTATCAATGATA+AGG 0.405078 7_2:+60276870 None:intergenic
GGATCTTGCAACACCCTCAT+TGG 0.427072 7_2:+60281652 None:intergenic
ACAATGTGACATTGTTATCA+AGG 0.427709 7_2:+60276537 None:intergenic
CCAAAGTGTATTTCCAAAAG+TGG 0.431664 7_2:+60281400 None:intergenic
CAGGAACTTCTATATCTGTA+TGG 0.433043 7_2:-60278285 Msa1066300:CDS
AGGAGACACTGTTTGGGTTG+AGG 0.441525 7_2:-60279659 Msa1066300:CDS
TAGTTTCATACAAATTCAAC+AGG 0.442700 7_2:+60280611 None:intergenic
AGATGTCCAGTCAGCAATAT+GGG 0.462315 7_2:-60277203 Msa1066300:CDS
GGCCCTTATCATTGATAGCC+AGG 0.463013 7_2:-60276873 Msa1066300:CDS
GTTTGCGCAAGGATTCTCTA+TGG 0.464632 7_2:-60281543 Msa1066300:CDS
ACAAGCTTGTCTACATAAGA+TGG 0.465464 7_2:+60277769 None:intergenic
GATGGAACTGGCTTAACAAC+AGG 0.466483 7_2:-60279228 Msa1066300:CDS
TTCCTGGCTATCAATGATAA+GGG 0.467148 7_2:+60276871 None:intergenic
ACATGGGAAGTTGATGGAAC+TGG 0.472230 7_2:-60279240 Msa1066300:CDS
CTACATTCTGGTCCTAGAAA+AGG 0.477386 7_2:+60281631 None:intergenic
CTCATCCTCTTGCATGGCTA+TGG 0.477615 7_2:+60277714 None:intergenic
TGTGATTCCAGAAAAGGGTT+TGG 0.479557 7_2:-60282281 Msa1066300:CDS
ATGAAGCTTGTTGGACCTGA+AGG 0.484251 7_2:-60277247 Msa1066300:intron
AGTACTGTGATTCCAGAAAA+GGG 0.485791 7_2:-60282286 Msa1066300:CDS
AGTGTATTTCCAAAAGTGGT+TGG 0.489103 7_2:+60281404 None:intergenic
AAGGTAGCCATAAATTTCTC+AGG 0.491005 7_2:+60277742 None:intergenic
ATAGCAACATGGGAAGTTGA+TGG 0.495904 7_2:-60279246 Msa1066300:CDS
AAGCCAGCTTCTTGAAGTGC+AGG 0.498998 7_2:-60278063 Msa1066300:intron
TGACTTTGAATTGCTCAAGA+AGG 0.508398 7_2:-60276894 Msa1066300:CDS
TCTAACTTGGACTAAAGATC+AGG 0.510257 7_2:+60276498 None:intergenic
CATTGATGACTAGAAACAAA+TGG 0.512147 7_2:-60276662 Msa1066300:CDS
AGTGCAAGGAGACACTGTTT+GGG 0.515525 7_2:-60279665 Msa1066300:CDS
TGATTGCAAAAGTCAATGCC+AGG 0.518483 7_2:+60279628 None:intergenic
TCCATTAGTTATGGCAACAA+GGG 0.530233 7_2:-60278967 Msa1066300:CDS
AGTTGACATGATTATTCGAA+GGG 0.533990 7_2:-60276445 Msa1066300:three_prime_UTR
AGCTCGAAACTTTCTTGCAG+TGG 0.538099 7_2:-60282465 Msa1066300:CDS
ATACCTGCACTTCAAGAAGC+TGG 0.540029 7_2:+60278060 None:intergenic
TTCCATTAGTTATGGCAACA+AGG 0.540060 7_2:-60278968 Msa1066300:CDS
TGAAGAGCATTCTGGAACAG+AGG 0.541888 7_2:-60276921 Msa1066300:CDS
TTGCATGGCTATGGTCCTCA+AGG 0.545540 7_2:+60277723 None:intergenic
GGAGTAATTGCTAACTCTAG+TGG 0.550394 7_2:+60281673 None:intergenic
GAAAGAAGATACATGGAGAC+AGG 0.550561 7_2:+60279201 None:intergenic
ACTCCAAAAGCTGATGAAAA+CGG 0.554851 7_2:-60279905 Msa1066300:intron
TTGAATTCAGGCAAATGGGG+TGG 0.561077 7_2:-60282330 Msa1066300:intron
CGCAAATCAAGAGGTAGCAA+TGG 0.561397 7_2:-60282503 Msa1066300:exon
AAGTGGTTGGAAGCATATCA+AGG 0.561594 7_2:+60281417 None:intergenic
AATACATAAGAACGAGGCAA+TGG 0.562764 7_2:+60279959 None:intergenic
AAGAAGGAGATGTAGATGAC+AGG 0.563546 7_2:-60281597 Msa1066300:CDS
TGAAGCTTGTTGGACCTGAA+GGG 0.564184 7_2:-60277246 Msa1066300:intron
TTATGGCAACAAGGGAAATG+AGG 0.564716 7_2:-60278959 Msa1066300:intron
ATAGTATTGATTGCTTCTGA+AGG 0.567549 7_2:+60278104 None:intergenic
GATGGTAGAGCGTTTGCGCA+AGG 0.567637 7_2:-60281554 Msa1066300:CDS
TCAGCAATATGGGAGGTTTG+CGG 0.572266 7_2:-60277193 Msa1066300:CDS
TTTGTATGAAACTAAAGTGA+AGG 0.575323 7_2:-60280602 Msa1066300:CDS
ATCTGAAGCCAATAGCAACA+TGG 0.576295 7_2:-60279257 Msa1066300:CDS
GTTACCGGAAAGAAGATACA+TGG 0.577935 7_2:+60279194 None:intergenic
CAGTTGACATGATTATTCGA+AGG 0.580008 7_2:-60276446 Msa1066300:three_prime_UTR
TGTGATAAAGATGTTTCTGA+TGG 0.581741 7_2:-60282251 Msa1066300:intron
GAGGAACTTCAAGAGCTAAG+AGG 0.585300 7_2:-60281368 Msa1066300:CDS
TACACTTTGGTTTAGTGACG+AGG 0.587689 7_2:-60281387 Msa1066300:CDS
GTTAGCAATTACTCCAATGA+GGG 0.588671 7_2:-60281665 Msa1066300:CDS
GAAGCTTGTTGGACCTGAAG+GGG 0.592425 7_2:-60277245 Msa1066300:intron
GAAAAGCTCATCCTCTTGCA+TGG 0.596233 7_2:+60277708 None:intergenic
GTTTGCAACTATAGTTGGAG+TGG 0.596685 7_2:-60277805 Msa1066300:CDS
GGTTTCATCAATGCTTGAAG+AGG 0.599410 7_2:-60277683 Msa1066300:intron
AAACCTCCCATATTGCTGAC+TGG 0.603393 7_2:+60277197 None:intergenic
TCTGAAGCCAATAGCAACAT+GGG 0.609278 7_2:-60279256 Msa1066300:CDS
AGTTAGCAATTACTCCAATG+AGG 0.619524 7_2:-60281666 Msa1066300:CDS
ACTACACACAGCACAGTGCA+AGG 0.619661 7_2:-60279679 Msa1066300:CDS
CAAAGTAGGCGCAAATCAAG+AGG 0.619679 7_2:-60282512 Msa1066300:five_prime_UTR
ATTTCTCGATCAATCTGCAA+GGG 0.622050 7_2:+60278991 None:intergenic
AATTTCTCGATCAATCTGCA+AGG 0.626269 7_2:+60278990 None:intergenic
GCAATGGAGTGTTCAAAGCA+CGG 0.630375 7_2:+60279975 None:intergenic
TAACTCAGATGACTACCTCA+TGG 0.631025 7_2:-60278247 Msa1066300:intron
ACTAAAGATCAGGTATCAAG+AGG 0.644575 7_2:+60276508 None:intergenic
GAGGACCATAGCCATGCAAG+AGG 0.645533 7_2:-60277719 Msa1066300:CDS
CCATCAGGCACCGAAAACAG+TGG 0.649649 7_2:-60277850 Msa1066300:CDS
GATTGCAAAAGTCAATGCCA+GGG 0.652587 7_2:+60279629 None:intergenic
AGAAATTTATGGCTACCTTG+AGG 0.656692 7_2:-60277738 Msa1066300:CDS
CAGAATGGCAAATGACTCAG+AGG 0.657102 7_2:-60276691 Msa1066300:CDS
AAAATCTGACGATCTAACCA+AGG 0.681796 7_2:-60279704 Msa1066300:CDS
GCAAATGGGGTGGAGCTACG+AGG 0.694142 7_2:-60282320 Msa1066300:CDS
TCTGCTATTGTATATAGACG+AGG 0.714826 7_2:-60276639 Msa1066300:CDS
TGTCCAGTCAGCAATATGGG+AGG 0.717026 7_2:-60277200 Msa1066300:CDS
TCAGGAAATACATAAGAACG+AGG 0.734559 7_2:+60279953 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAATGTTTTTTAAAATTTT+GGG + chr7_2:60277749-60277768 None:intergenic 10.0%
!! TTAAAATTGATATTAAAGTA+AGG - chr7_2:60279173-60279192 Msa1066300:intron 10.0%
!! TCATATAAAAAATATCTAAA+GGG + chr7_2:60279421-60279440 None:intergenic 10.0%
!! ATCATATAAAAAATATCTAA+AGG + chr7_2:60279422-60279441 None:intergenic 10.0%
!! TTGTTTCAAATAAAAACATT+TGG + chr7_2:60277135-60277154 None:intergenic 15.0%
!!! TTTTGTTTTTCTTTGAAAAA+AGG - chr7_2:60277215-60277234 Msa1066300:CDS 15.0%
!!! TTTGTTTTTCTTTGAAAAAA+GGG - chr7_2:60277216-60277235 Msa1066300:CDS 15.0%
!!! CAGAATGTTTTTTAAAATTT+TGG + chr7_2:60277750-60277769 None:intergenic 15.0%
!!! AAATTAACTATTTTTACTCA+AGG + chr7_2:60277814-60277833 None:intergenic 15.0%
!!! TTCTAATTTATGTTTTTAAG+TGG - chr7_2:60278427-60278446 Msa1066300:intron 15.0%
!!! AGTTTGATTTAAATATTGTT+AGG - chr7_2:60278501-60278520 Msa1066300:intron 15.0%
!!! TTTTTTAGTTTATACATTCA+AGG - chr7_2:60278666-60278685 Msa1066300:intron 15.0%
!! CATATAAAAAATATCTAAAG+GGG + chr7_2:60279420-60279439 None:intergenic 15.0%
!! ATTAATGACCAATATTTATA+AGG + chr7_2:60279471-60279490 None:intergenic 15.0%
!!! ATTACTTTTTTTTCCATATA+CGG - chr7_2:60279580-60279599 Msa1066300:intron 15.0%
!! AAGAAAAACAATGAATTAAA+GGG + chr7_2:60279895-60279914 None:intergenic 15.0%
!! AAAAAAAATCAATCAATCAT+GGG + chr7_2:60280007-60280026 None:intergenic 15.0%
!! AAAAAAAAATCAATCAATCA+TGG + chr7_2:60280008-60280027 None:intergenic 15.0%
!! AACAATAGATAATATCAAAT+AGG + chr7_2:60280948-60280967 None:intergenic 15.0%
!!! CTATGCAATATTTTTTTTAA+TGG - chr7_2:60281275-60281294 Msa1066300:intron 15.0%
!! TATCATATAATTGATTATAC+CGG - chr7_2:60281455-60281474 Msa1066300:intron 15.0%
!!! ATCGGATATAAATATATTTT+AGG + chr7_2:60281871-60281890 None:intergenic 15.0%
!!! TTTTTTTTTTTTGGTGAAGT+CGG - chr7_2:60276291-60276310 Msa1066300:three_prime_UTR 20.0%
!! TACTTTGACAAGAAAAAAAA+TGG + chr7_2:60276402-60276421 None:intergenic 20.0%
!!! ATTTTTTTTCTTGTCAAAGT+AGG - chr7_2:60276401-60276420 Msa1066300:three_prime_UTR 20.0%
!!! CATAGTTTTGAATTTTGATT+TGG - chr7_2:60276572-60276591 Msa1066300:CDS 20.0%
!! TGTACTAATATCAATATGAA+TGG - chr7_2:60276705-60276724 Msa1066300:intron 20.0%
!!! TTTTCATAAGCTCAAAAATA+AGG - chr7_2:60276964-60276983 Msa1066300:intron 20.0%
!! ACTTATTTGAGCTTATTTAT+CGG + chr7_2:60277072-60277091 None:intergenic 20.0%
!! AACAAAATAAACCATACATA+CGG + chr7_2:60277413-60277432 None:intergenic 20.0%
!!! TTTATTTTGTTTTGCTTTTG+TGG - chr7_2:60277422-60277441 Msa1066300:intron 20.0%
!! TAATTTAGCTATTAAAACAC+AGG + chr7_2:60277669-60277688 None:intergenic 20.0%
!! ATAGCTAAATTAAAAAATCC+TGG - chr7_2:60277677-60277696 Msa1066300:intron 20.0%
!!! GAGTAAAAATAGTTAATTTG+AGG - chr7_2:60277815-60277834 Msa1066300:CDS 20.0%
!!! TAAAAATAGTTAATTTGAGG+CGG - chr7_2:60277818-60277837 Msa1066300:CDS 20.0%
!! TAAGATGTCAAAATTTCAAT+AGG + chr7_2:60278480-60278499 None:intergenic 20.0%
!! TTATGTCAATCATGTTAATT+TGG - chr7_2:60278525-60278544 Msa1066300:intron 20.0%
!!! TGTTAATTTGGTTTTGAAAT+TGG - chr7_2:60278537-60278556 Msa1066300:intron 20.0%
!!! GTTAATTTGGTTTTGAAATT+GGG - chr7_2:60278538-60278557 Msa1066300:intron 20.0%
!! TAGTATATTTAGTGCAATAA+TGG + chr7_2:60278625-60278644 None:intergenic 20.0%
!! AAAATCAGTGAAATACTAAA+CGG + chr7_2:60279148-60279167 None:intergenic 20.0%
!! ACTAAACACCTTATAAATAT+TGG - chr7_2:60279460-60279479 Msa1066300:intron 20.0%
!! AGAAAAACAATGAATTAAAG+GGG + chr7_2:60279894-60279913 None:intergenic 20.0%
!! CAAGAAAAACAATGAATTAA+AGG + chr7_2:60279896-60279915 None:intergenic 20.0%
!!! CTTTAATTCATTGTTTTTCT+TGG - chr7_2:60279894-60279913 Msa1066300:intron 20.0%
!!! TTTTCTCTTCTATTTTTCTA+TGG - chr7_2:60280024-60280043 Msa1066300:intron 20.0%
!! TAAAGTTGACGATAAATTAT+TGG + chr7_2:60280894-60280913 None:intergenic 20.0%
!!! AAATTCAGTTTCTGTTATTT+TGG - chr7_2:60280988-60281007 Msa1066300:intron 20.0%
!!! ATGTGATTTTTTCTTCTATT+TGG - chr7_2:60281395-60281414 Msa1066300:CDS 20.0%
!! ATATATACAATCAACTGTTA+TGG + chr7_2:60281830-60281849 None:intergenic 20.0%
!!! TTTTTCTTCAATAAGTGAAA+TGG + chr7_2:60281897-60281916 None:intergenic 20.0%
!! TTTCACTTATTGAAGAAAAA+AGG - chr7_2:60281897-60281916 Msa1066300:intron 20.0%
!! AAAAGACATCAATATATTGT+AGG + chr7_2:60282188-60282207 None:intergenic 20.0%
!! CTTAAAGGAAATAAAGAAAA+AGG + chr7_2:60282216-60282235 None:intergenic 20.0%
!!! AAAAAAATGGTGATGGTTTA+AGG + chr7_2:60276389-60276408 None:intergenic 25.0%
!!! TTAGCTTTTATACCATTCTT+TGG - chr7_2:60276524-60276543 Msa1066300:three_prime_UTR 25.0%
! TTTGAAAATTCACCAAAGAA+TGG + chr7_2:60276539-60276558 None:intergenic 25.0%
!! TCTTTGGTGAATTTTCAAAA+TGG - chr7_2:60276540-60276559 Msa1066300:exon 25.0%
!!! TTTGATTTGGTTTTGAATTC+AGG - chr7_2:60276585-60276604 Msa1066300:CDS 25.0%
!!! TGAATGGATTTTATTGTAGT+TGG - chr7_2:60276721-60276740 Msa1066300:intron 25.0%
! ACAACTTATGCAAATAAATG+AGG - chr7_2:60276822-60276841 Msa1066300:intron 25.0%
!! TTCTCTGTTTTCAAAAAGTA+AGG + chr7_2:60277190-60277209 None:intergenic 25.0%
!! CTTAATGATGTTGTTATTGA+TGG - chr7_2:60277355-60277374 Msa1066300:intron 25.0%
! CTAAATTAAAAAATCCTGGT+TGG - chr7_2:60277681-60277700 Msa1066300:intron 25.0%
! TTGTTATATAGAGTCAATTG+CGG - chr7_2:60277973-60277992 Msa1066300:intron 25.0%
! TATATTAGAAAAGCTAGGTT+TGG + chr7_2:60278120-60278139 None:intergenic 25.0%
! GAGATTATATTAGAAAAGCT+AGG + chr7_2:60278125-60278144 None:intergenic 25.0%
!! CTTTTCTAATATAATCTCCA+TGG - chr7_2:60278127-60278146 Msa1066300:intron 25.0%
!!! AACAAATTTAGGCTGTTTTA+CGG - chr7_2:60278200-60278219 Msa1066300:intron 25.0%
! TCAAATACTGCTAAATACAA+TGG + chr7_2:60278269-60278288 None:intergenic 25.0%
! TAGTTTCATACAAATTCAAC+AGG + chr7_2:60278319-60278338 None:intergenic 25.0%
! TTTGTATGAAACTAAAGTGA+AGG - chr7_2:60278325-60278344 Msa1066300:intron 25.0%
! TTTCAAACATACATTTACGA+TGG - chr7_2:60278770-60278789 Msa1066300:intron 25.0%
!! ATTTATAAGGTGTTTAGTGA+AGG + chr7_2:60279458-60279477 None:intergenic 25.0%
! ATGTTATGAAACTACCTAAA+TGG + chr7_2:60279852-60279871 None:intergenic 25.0%
! ATTCAAATTGACTGAACAAA+AGG - chr7_2:60280376-60280395 Msa1066300:intron 25.0%
!! TTTTATTGACCAGTAAACTA+TGG + chr7_2:60280418-60280437 None:intergenic 25.0%
!! GTAGGTATAAATTTTACTCT+TGG + chr7_2:60280733-60280752 None:intergenic 25.0%
! AGAAACTGAATTTACAAAAG+GGG + chr7_2:60280981-60281000 None:intergenic 25.0%
! CAGAAACTGAATTTACAAAA+GGG + chr7_2:60280982-60281001 None:intergenic 25.0%
! ACAGAAACTGAATTTACAAA+AGG + chr7_2:60280983-60281002 None:intergenic 25.0%
!!! ATTTTGGTTTTGTTTACAGA+AGG - chr7_2:60281004-60281023 Msa1066300:intron 25.0%
!! TGTTTTTCCTGAGAAATTTA+TGG - chr7_2:60281178-60281197 Msa1066300:intron 25.0%
! CAAATGAAAACAAAATTGTC+AGG + chr7_2:60281602-60281621 None:intergenic 25.0%
!!! CTGACAATTTTGTTTTCATT+TGG - chr7_2:60281600-60281619 Msa1066300:CDS 25.0%
! CTGATGAAATTGAAACTAAA+TGG + chr7_2:60281627-60281646 None:intergenic 25.0%
! GTGAAAATATGAAAGCAATT+AGG + chr7_2:60281964-60281983 None:intergenic 25.0%
!! TCATATTTTCACTGCATTTA+AGG - chr7_2:60281972-60281991 Msa1066300:intron 25.0%
! GGGTGAAAAATGATAATATA+GGG + chr7_2:60282135-60282154 None:intergenic 25.0%
! AGGGTGAAAAATGATAATAT+AGG + chr7_2:60282136-60282155 None:intergenic 25.0%
!! AGAAATGCAAGTTTTACTTA+GGG + chr7_2:60282155-60282174 None:intergenic 25.0%
! TTTATTTCCTTTAAGCAGAA+TGG - chr7_2:60282221-60282240 Msa1066300:intron 25.0%
! CAATGAGTAAAAATCTAACT+TGG + chr7_2:60282445-60282464 None:intergenic 25.0%
! AACTTTCCACACTAAAAAAT+TGG + chr7_2:60282518-60282537 None:intergenic 25.0%
!! ATTTTCACCCCAATTTTTAA+GGG + chr7_2:60282593-60282612 None:intergenic 25.0%
GACAAGAAAAAAAATGGTGA+TGG + chr7_2:60276396-60276415 None:intergenic 30.0%
! GTTTGTAATTTAAGGCCTAA+TGG - chr7_2:60276491-60276510 Msa1066300:three_prime_UTR 30.0%
! TGTGATAAAGATGTTTCTGA+TGG - chr7_2:60276676-60276695 Msa1066300:CDS 30.0%
!!! TTGCTGTTTTGAATTATGCA+AGG - chr7_2:60276778-60276797 Msa1066300:intron 30.0%
CAAAAATAAGGCAATCCAAA+CGG - chr7_2:60276976-60276995 Msa1066300:intron 30.0%
AAAAATAAGGCAATCCAAAC+GGG - chr7_2:60276977-60276996 Msa1066300:intron 30.0%
TTCAGAAAACAGCTAAAGTT+TGG - chr7_2:60277098-60277117 Msa1066300:intron 30.0%
TCAGAAAACAGCTAAAGTTT+GGG - chr7_2:60277099-60277118 Msa1066300:intron 30.0%
TTTGAAAAAAGGGATTCTGT+TGG - chr7_2:60277226-60277245 Msa1066300:CDS 30.0%
TTGTAGTAAATAACGTATCG+TGG + chr7_2:60277949-60277968 None:intergenic 30.0%
! GTTGACTCTATATAACATTC+TGG + chr7_2:60278085-60278104 None:intergenic 30.0%
ATATAATCTCCATGGTGTAA+TGG - chr7_2:60278135-60278154 Msa1066300:intron 30.0%
TATAATCTCCATGGTGTAAT+GGG - chr7_2:60278136-60278155 Msa1066300:intron 30.0%
!!! ATGACTTTTTTGAACCTTTC+AGG - chr7_2:60278175-60278194 Msa1066300:intron 30.0%
!! ACAAATTTAGGCTGTTTTAC+GGG - chr7_2:60278201-60278220 Msa1066300:intron 30.0%
!! AAGAAACTTTTGACTCTTGA+CGG - chr7_2:60278356-60278375 Msa1066300:intron 30.0%
GTCTCAATTTATAATCCTGA+AGG + chr7_2:60278711-60278730 None:intergenic 30.0%
AAGTAAGGAAGTTATATTGC+AGG - chr7_2:60279188-60279207 Msa1066300:intron 30.0%
!!! TTCCTTGTTTTTTCATTGAC+TGG - chr7_2:60279380-60279399 Msa1066300:intron 30.0%
!!! TCCTTGTTTTTTCATTGACT+GGG - chr7_2:60279381-60279400 Msa1066300:intron 30.0%
ATATCAGCTGTTTGATCATA+GGG + chr7_2:60279514-60279533 None:intergenic 30.0%
AATATCAGCTGTTTGATCAT+AGG + chr7_2:60279515-60279534 None:intergenic 30.0%
CATACATATATATGCATGTC+TGG - chr7_2:60279541-60279560 Msa1066300:intron 30.0%
! TTTTTCCATATACGGTAGTA+TGG - chr7_2:60279588-60279607 Msa1066300:intron 30.0%
AAGGTAAATCACATATTCTC+AGG + chr7_2:60279632-60279651 None:intergenic 30.0%
TGTGATTTACCTTGATTACA+TGG - chr7_2:60279639-60279658 Msa1066300:CDS 30.0%
TGATTTCTCTCTTTCCATTT+AGG - chr7_2:60279835-60279854 Msa1066300:intron 30.0%
CGAGAAATTTCCATTAGTTA+TGG - chr7_2:60279951-60279970 Msa1066300:CDS 30.0%
!! CAGCGAAGTTGATTTTATAT+AGG - chr7_2:60280137-60280156 Msa1066300:intron 30.0%
TTGCATCATATCATGTGAAT+AGG + chr7_2:60280204-60280223 None:intergenic 30.0%
AACAAAAGGTTTGATAGAAC+TGG - chr7_2:60280390-60280409 Msa1066300:intron 30.0%
TGGTCAATAAAATTCCATCA+AGG - chr7_2:60280426-60280445 Msa1066300:intron 30.0%
! GCTTATTTCAAGTGTTAACA+TGG - chr7_2:60280596-60280615 Msa1066300:CDS 30.0%
ACTAAGGAATGGAAGTAATA+TGG + chr7_2:60280755-60280774 None:intergenic 30.0%
!! ATAGTATTGATTGCTTCTGA+AGG + chr7_2:60280826-60280845 None:intergenic 30.0%
GAAACTGAATTTACAAAAGG+GGG + chr7_2:60280980-60280999 None:intergenic 30.0%
!!! GATAATGGATTTTTTCCATC+AGG - chr7_2:60281062-60281081 Msa1066300:intron 30.0%
!! GTTATTTTCTCCACTGTTTT+CGG + chr7_2:60281090-60281109 None:intergenic 30.0%
ACAAAGTTTGCAACTATAGT+TGG - chr7_2:60281117-60281136 Msa1066300:intron 30.0%
!! GAAAAAAGGTATCATGTTTG+TGG + chr7_2:60281354-60281373 None:intergenic 30.0%
AGTAGACAAGTGATGAAAAA+AGG + chr7_2:60281368-60281387 None:intergenic 30.0%
TAATTGATTATACCGGTAGA+TGG - chr7_2:60281462-60281481 Msa1066300:intron 30.0%
ACAAAATTGTCAGGTCTATT+CGG + chr7_2:60281593-60281612 None:intergenic 30.0%
! TTCACTGCATTTAAGGTTAA+TGG - chr7_2:60281979-60281998 Msa1066300:intron 30.0%
! GAGAAATGCAAGTTTTACTT+AGG + chr7_2:60282156-60282175 None:intergenic 30.0%
! CATTGATGACTAGAAACAAA+TGG - chr7_2:60282265-60282284 Msa1066300:CDS 30.0%
ACAATGTGACATTGTTATCA+AGG + chr7_2:60282393-60282412 None:intergenic 30.0%
AGTTGACATGATTATTCGAA+GGG - chr7_2:60282482-60282501 Msa1066300:CDS 30.0%
!!! TTAGCTCCAATTTTTTAGTG+TGG - chr7_2:60282509-60282528 Msa1066300:five_prime_UTR 30.0%
! CATTTTCACCCCAATTTTTA+AGG + chr7_2:60282594-60282613 None:intergenic 30.0%
GGCTACAGGTTTGTAATTTA+AGG - chr7_2:60276483-60276502 Msa1066300:three_prime_UTR 35.0%
! GCTAAACACGTTTTACCATT+AGG + chr7_2:60276509-60276528 None:intergenic 35.0%
!!! TGGTTTTGAATTCAGGCAAA+TGG - chr7_2:60276592-60276611 Msa1066300:CDS 35.0%
!!! GGTTTTGAATTCAGGCAAAT+GGG - chr7_2:60276593-60276612 Msa1066300:CDS 35.0%
!! GTTTTGAATTCAGGCAAATG+GGG - chr7_2:60276594-60276613 Msa1066300:CDS 35.0%
! AAGTACTGTGATTCCAGAAA+AGG - chr7_2:60276640-60276659 Msa1066300:CDS 35.0%
AGTACTGTGATTCCAGAAAA+GGG - chr7_2:60276641-60276660 Msa1066300:CDS 35.0%
! AAATATGCCAAACCCTTTTC+TGG + chr7_2:60276656-60276675 None:intergenic 35.0%
AAAATAAGGCAATCCAAACG+GGG - chr7_2:60276978-60276997 Msa1066300:intron 35.0%
GTAGCAATAAACACTGTTCA+GGG + chr7_2:60277164-60277183 None:intergenic 35.0%
AGTTAGCAATTACTCCAATG+AGG - chr7_2:60277261-60277280 Msa1066300:intron 35.0%
GTTAGCAATTACTCCAATGA+GGG - chr7_2:60277262-60277281 Msa1066300:intron 35.0%
TCAAACAAAGCTCTACATTC+TGG + chr7_2:60277311-60277330 None:intergenic 35.0%
!! TGTAGAGCTTTGTTTGAAGA+AGG - chr7_2:60277314-60277333 Msa1066300:intron 35.0%
TTCAGAACTTCAGATTGTGT+TGG - chr7_2:60277445-60277464 Msa1066300:intron 35.0%
TCAGAACTTCAGATTGTGTT+GGG - chr7_2:60277446-60277465 Msa1066300:intron 35.0%
GGAGATGCTGAAATTTAATC+AGG - chr7_2:60277485-60277504 Msa1066300:intron 35.0%
AGTGTATTTCCAAAAGTGGT+TGG + chr7_2:60277526-60277545 None:intergenic 35.0%
CCAAAGTGTATTTCCAAAAG+TGG + chr7_2:60277530-60277549 None:intergenic 35.0%
!! CCACTTTTGGAAATACACTT+TGG - chr7_2:60277527-60277546 Msa1066300:intron 35.0%
ATATCGTGCAACTCAATTAC+AGG - chr7_2:60277591-60277610 Msa1066300:intron 35.0%
AAACACAGGTTTACTCAGAT+TGG + chr7_2:60277655-60277674 None:intergenic 35.0%
! GATAGAACGAATGTCATTTC+TGG - chr7_2:60278230-60278249 Msa1066300:intron 35.0%
!! AGATTCTGAGATGTATGTGT+TGG - chr7_2:60278379-60278398 Msa1066300:intron 35.0%
!! GATTCTGAGATGTATGTGTT+GGG - chr7_2:60278380-60278399 Msa1066300:intron 35.0%
!!! GGTTTTGAAATTGGGAACTA+CGG - chr7_2:60278546-60278565 Msa1066300:intron 35.0%
!! TGTGCTTTGAAGATTTCCTT+TGG - chr7_2:60278826-60278845 Msa1066300:intron 35.0%
! TCACTAGAAGTACATACCAA+AGG + chr7_2:60278845-60278864 None:intergenic 35.0%
TATGACTTCAACTAACTCCT+TGG - chr7_2:60278878-60278897 Msa1066300:intron 35.0%
! CTAGGGCAAATTCAGTATTT+TGG - chr7_2:60278927-60278946 Msa1066300:intron 35.0%
AATACATAAGAACGAGGCAA+TGG + chr7_2:60278971-60278990 None:intergenic 35.0%
TCAGGAAATACATAAGAACG+AGG + chr7_2:60278977-60278996 None:intergenic 35.0%
ACTCCAAAAGCTGATGAAAA+CGG - chr7_2:60279022-60279041 Msa1066300:intron 35.0%
! TAACCGTTTTCATCAGCTTT+TGG + chr7_2:60279028-60279047 None:intergenic 35.0%
AAAATCTGACGATCTAACCA+AGG - chr7_2:60279223-60279242 Msa1066300:CDS 35.0%
TCCCAGTCAATGAAAAAACA+AGG + chr7_2:60279385-60279404 None:intergenic 35.0%
TATATGCATGTCTGGATTTG+TGG - chr7_2:60279549-60279568 Msa1066300:intron 35.0%
ATCTACCATACTACCGTATA+TGG + chr7_2:60279596-60279615 None:intergenic 35.0%
GTAAATCACATATTCTCAGG+AGG + chr7_2:60279629-60279648 None:intergenic 35.0%
AAACACACACAGAATGTTAC+CGG + chr7_2:60279751-60279770 None:intergenic 35.0%
ATTTCTCGATCAATCTGCAA+GGG + chr7_2:60279939-60279958 None:intergenic 35.0%
AATTTCTCGATCAATCTGCA+AGG + chr7_2:60279940-60279959 None:intergenic 35.0%
TTCCATTAGTTATGGCAACA+AGG - chr7_2:60279959-60279978 Msa1066300:CDS 35.0%
TCCATTAGTTATGGCAACAA+GGG - chr7_2:60279960-60279979 Msa1066300:CDS 35.0%
! GGGAAATGAGGTACTTTATA+TGG - chr7_2:60279980-60279999 Msa1066300:CDS 35.0%
TGTTGAATGAGTGAGAATAG+AGG - chr7_2:60280086-60280105 Msa1066300:intron 35.0%
CTGCATCAAGTGGAAAAATA+TGG + chr7_2:60280625-60280644 None:intergenic 35.0%
! CATATTTTTCCACTTGATGC+AGG - chr7_2:60280623-60280642 Msa1066300:intron 35.0%
CAGGAACTTCTATATCTGTA+TGG - chr7_2:60280642-60280661 Msa1066300:intron 35.0%
!!! CTGTATGGTTTTGTCATTGA+TGG - chr7_2:60280657-60280676 Msa1066300:intron 35.0%
!! AAATTTTACTCTTGGTGCAC+AGG + chr7_2:60280725-60280744 None:intergenic 35.0%
AGGAATGGAAGTAATATGGT+AGG + chr7_2:60280751-60280770 None:intergenic 35.0%
CAACAGAAACAACTAAGGAA+TGG + chr7_2:60280766-60280785 None:intergenic 35.0%
!! CATTCCTTAGTTGTTTCTGT+TGG - chr7_2:60280764-60280783 Msa1066300:intron 35.0%
! TGATTGCTTCTGAAGGATAA+TGG + chr7_2:60280819-60280838 None:intergenic 35.0%
ACAAGCTTGTCTACATAAGA+TGG + chr7_2:60281161-60281180 None:intergenic 35.0%
AAGGTAGCCATAAATTTCTC+AGG + chr7_2:60281188-60281207 None:intergenic 35.0%
AGAAATTTATGGCTACCTTG+AGG - chr7_2:60281189-60281208 Msa1066300:intron 35.0%
!!! CATTTTAGCTTTCCATCTAC+CGG + chr7_2:60281477-60281496 None:intergenic 35.0%
TACATATCAATGGTCTGCTT+GGG + chr7_2:60281506-60281525 None:intergenic 35.0%
TTACATATCAATGGTCTGCT+TGG + chr7_2:60281507-60281526 None:intergenic 35.0%
! AGCAGAGTGTTACATATCAA+TGG + chr7_2:60281516-60281535 None:intergenic 35.0%
TTGCACACAAGATACATCAA+TGG + chr7_2:60281939-60281958 None:intergenic 35.0%
TGACTTTGAATTGCTCAAGA+AGG - chr7_2:60282033-60282052 Msa1066300:intron 35.0%
TTCCTGGCTATCAATGATAA+GGG + chr7_2:60282059-60282078 None:intergenic 35.0%
TCATTTGCCATTCTGCTTAA+AGG + chr7_2:60282231-60282250 None:intergenic 35.0%
TCTGCTATTGTATATAGACG+AGG - chr7_2:60282288-60282307 Msa1066300:CDS 35.0%
ACTAAAGATCAGGTATCAAG+AGG + chr7_2:60282422-60282441 None:intergenic 35.0%
TCTAACTTGGACTAAAGATC+AGG + chr7_2:60282432-60282451 None:intergenic 35.0%
CTCATTGTCAATTCAGTTCT+TGG - chr7_2:60282458-60282477 Msa1066300:intron 35.0%
CAGTTGACATGATTATTCGA+AGG - chr7_2:60282481-60282500 Msa1066300:CDS 35.0%
AAGTTTCGAGCTTTGCTTCT+GGG + chr7_2:60276454-60276473 None:intergenic 40.0%
AAAGTTTCGAGCTTTGCTTC+TGG + chr7_2:60276455-60276474 None:intergenic 40.0%
TGTGATTCCAGAAAAGGGTT+TGG - chr7_2:60276646-60276665 Msa1066300:CDS 40.0%
! CAACTGATGGACATGTCATA+AGG - chr7_2:60277012-60277031 Msa1066300:intron 40.0%
ATCGGTATGTGACACTGTTT+GGG + chr7_2:60277054-60277073 None:intergenic 40.0%
TATCGGTATGTGACACTGTT+TGG + chr7_2:60277055-60277074 None:intergenic 40.0%
CGTAGCAATAAACACTGTTC+AGG + chr7_2:60277165-60277184 None:intergenic 40.0%
GGAGTAATTGCTAACTCTAG+TGG + chr7_2:60277257-60277276 None:intergenic 40.0%
! GTGTTGCAAGATCCTTTTCT+AGG - chr7_2:60277284-60277303 Msa1066300:intron 40.0%
CTACATTCTGGTCCTAGAAA+AGG + chr7_2:60277299-60277318 None:intergenic 40.0%
AAGAAGGAGATGTAGATGAC+AGG - chr7_2:60277330-60277349 Msa1066300:intron 40.0%
CTCTATGGAAACCGTATGTA+TGG - chr7_2:60277399-60277418 Msa1066300:intron 40.0%
! AAGTGGTTGGAAGCATATCA+AGG + chr7_2:60277513-60277532 None:intergenic 40.0%
! GATATGCTTCCAACCACTTT+TGG - chr7_2:60277514-60277533 Msa1066300:intron 40.0%
! TACACTTTGGTTTAGTGACG+AGG - chr7_2:60277540-60277559 Msa1066300:intron 40.0%
! GGTTTACTCAGATTGGTCAA+TGG + chr7_2:60277648-60277667 None:intergenic 40.0%
AAAGCACAGAAACCAACACA+TGG + chr7_2:60277718-60277737 None:intergenic 40.0%
CCTCGTATAACATTCTAGTG+TGG + chr7_2:60278054-60278073 None:intergenic 40.0%
CCACACTAGAATGTTATACG+AGG - chr7_2:60278051-60278070 Msa1066300:intron 40.0%
! CCTAAATTTGTTCGCCTGAA+AGG + chr7_2:60278192-60278211 None:intergenic 40.0%
CCTTTCAGGCGAACAAATTT+AGG - chr7_2:60278189-60278208 Msa1066300:intron 40.0%
!! TTAGGCTGTTTTACGGGAAT+TGG - chr7_2:60278207-60278226 Msa1066300:intron 40.0%
!! TAGGCTGTTTTACGGGAATT+GGG - chr7_2:60278208-60278227 Msa1066300:intron 40.0%
ATACCTTCTCAACTACCTTC+AGG - chr7_2:60278693-60278712 Msa1066300:intron 40.0%
AATCCTGAAGGTAGTTGAGA+AGG + chr7_2:60278699-60278718 None:intergenic 40.0%
!! TATGACCTGTTTTTCCAGAG+AGG - chr7_2:60278803-60278822 Msa1066300:intron 40.0%
AAGTCAGATATCAACCTCCA+AGG + chr7_2:60278898-60278917 None:intergenic 40.0%
! ATCTGACTTGCATTCATGCT+AGG - chr7_2:60278909-60278928 Msa1066300:intron 40.0%
! TCTGACTTGCATTCATGCTA+GGG - chr7_2:60278910-60278929 Msa1066300:intron 40.0%
TGATGAACATCTTGCATCTC+AGG + chr7_2:60278995-60279014 None:intergenic 40.0%
TCACAGGAGACAATCTTTAC+AGG + chr7_2:60279105-60279124 None:intergenic 40.0%
! GATCGTCAGATTTTGTGACT+TGG + chr7_2:60279217-60279236 None:intergenic 40.0%
GATTGCAAAAGTCAATGCCA+GGG + chr7_2:60279301-60279320 None:intergenic 40.0%
TGATTGCAAAAGTCAATGCC+AGG + chr7_2:60279302-60279321 None:intergenic 40.0%
!!! GGCATTGACTTTTGCAATCA+TGG - chr7_2:60279302-60279321 Msa1066300:intron 40.0%
GTTTGATCATAGGGACTTTG+AGG + chr7_2:60279505-60279524 None:intergenic 40.0%
! TCTGATTGGCCATGTAATCA+AGG + chr7_2:60279651-60279670 None:intergenic 40.0%
!! CTATTGGCTTCAGATCTGAT+TGG + chr7_2:60279665-60279684 None:intergenic 40.0%
! ATCTGAAGCCAATAGCAACA+TGG - chr7_2:60279670-60279689 Msa1066300:CDS 40.0%
! TCTGAAGCCAATAGCAACAT+GGG - chr7_2:60279671-60279690 Msa1066300:CDS 40.0%
TCAACTTCCCATGTTGCTAT+TGG + chr7_2:60279681-60279700 None:intergenic 40.0%
ATAGCAACATGGGAAGTTGA+TGG - chr7_2:60279681-60279700 Msa1066300:CDS 40.0%
GAAAGAAGATACATGGAGAC+AGG + chr7_2:60279729-60279748 None:intergenic 40.0%
GTCTCCATGTATCTTCTTTC+CGG - chr7_2:60279729-60279748 Msa1066300:intron 40.0%
GTTACCGGAAAGAAGATACA+TGG + chr7_2:60279736-60279755 None:intergenic 40.0%
TCCCTTGTTGCCATAACTAA+TGG + chr7_2:60279964-60279983 None:intergenic 40.0%
TTATGGCAACAAGGGAAATG+AGG - chr7_2:60279968-60279987 Msa1066300:CDS 40.0%
AGGTATGCAAGGGAAACATA+CGG - chr7_2:60280296-60280315 Msa1066300:intron 40.0%
!! GTTCTGGTTCAATGCTTTGT+TGG - chr7_2:60280347-60280366 Msa1066300:intron 40.0%
GAACTGGATCCATAGTTTAC+TGG - chr7_2:60280406-60280425 Msa1066300:intron 40.0%
TAAGCTAAAAGGCCTAGTGT+AGG + chr7_2:60280460-60280479 None:intergenic 40.0%
ACAGAACAGAAGTTCCACTT+GGG + chr7_2:60280548-60280567 None:intergenic 40.0%
AACAGAACAGAAGTTCCACT+TGG + chr7_2:60280549-60280568 None:intergenic 40.0%
TGGAACTTCTGTTCTGTTCA+AGG - chr7_2:60280551-60280570 Msa1066300:intron 40.0%
ATAGAAGTTCCTGCATCAAG+TGG + chr7_2:60280635-60280654 None:intergenic 40.0%
TAACTCAGATGACTACCTCA+TGG - chr7_2:60280680-60280699 Msa1066300:intron 40.0%
AGATGACTACCTCATGGTAA+TGG - chr7_2:60280686-60280705 Msa1066300:intron 40.0%
AAGTGTAAGCCATTACCATG+AGG + chr7_2:60280698-60280717 None:intergenic 40.0%
CATGCCAACAGAAACAACTA+AGG + chr7_2:60280771-60280790 None:intergenic 40.0%
! TCTTTTACCCAAAACTCTGC+TGG - chr7_2:60281040-60281059 Msa1066300:intron 40.0%
! CCATTATCCAGCAGAGTTTT+GGG + chr7_2:60281050-60281069 None:intergenic 40.0%
! TCCATTATCCAGCAGAGTTT+TGG + chr7_2:60281051-60281070 None:intergenic 40.0%
GTTTGCAACTATAGTTGGAG+TGG - chr7_2:60281122-60281141 Msa1066300:intron 40.0%
GGTTTCATCAATGCTTGAAG+AGG - chr7_2:60281244-60281263 Msa1066300:intron 40.0%
AAATGCAGTTTCAGTGACCA+AGG + chr7_2:60281316-60281335 None:intergenic 40.0%
! ATTTTCAGATGCTGTCCTGA+TGG + chr7_2:60281544-60281563 None:intergenic 40.0%
TTCTGTCACATGAAGCTTGT+TGG - chr7_2:60281671-60281690 Msa1066300:CDS 40.0%
TAGATGTCCAGTCAGCAATA+TGG - chr7_2:60281723-60281742 Msa1066300:intron 40.0%
AGATGTCCAGTCAGCAATAT+GGG - chr7_2:60281724-60281743 Msa1066300:intron 40.0%
TATGGTTGTTACGTAACTCC+TGG + chr7_2:60281812-60281831 None:intergenic 40.0%
CAATAAGTGAAATGGCGCAT+CGG + chr7_2:60281889-60281908 None:intergenic 40.0%
CTTCCTGGCTATCAATGATA+AGG + chr7_2:60282060-60282079 None:intergenic 40.0%
TTCAGCACGCCCTTAAAAAT+TGG - chr7_2:60282581-60282600 Msa1066300:five_prime_UTR 40.0%
TCAGCACGCCCTTAAAAATT+GGG - chr7_2:60282582-60282601 Msa1066300:five_prime_UTR 40.0%
CAAAGTAGGCGCAAATCAAG+AGG - chr7_2:60276415-60276434 Msa1066300:three_prime_UTR 45.0%
CGCAAATCAAGAGGTAGCAA+TGG - chr7_2:60276424-60276443 Msa1066300:three_prime_UTR 45.0%
AGCTCGAAACTTTCTTGCAG+TGG - chr7_2:60276462-60276481 Msa1066300:three_prime_UTR 45.0%
AACTTTCTTGCAGTGGCTAC+AGG - chr7_2:60276469-60276488 Msa1066300:three_prime_UTR 45.0%
TTGAATTCAGGCAAATGGGG+TGG - chr7_2:60276597-60276616 Msa1066300:CDS 45.0%
!!! GTCCATCAGTTGCTGTTTTC+AGG + chr7_2:60277004-60277023 None:intergenic 45.0%
GTTTGCGCAAGGATTCTCTA+TGG - chr7_2:60277384-60277403 Msa1066300:intron 45.0%
TTGGGAGTTTCACTCACTTG+TGG - chr7_2:60277464-60277483 Msa1066300:intron 45.0%
GAGGAACTTCAAGAGCTAAG+AGG - chr7_2:60277559-60277578 Msa1066300:intron 45.0%
! AAAAAATCCTGGTTGGCCAG+TGG - chr7_2:60277688-60277707 Msa1066300:CDS 45.0%
TGGTCAATCGCGGAAAATAG+CGG + chr7_2:60278034-60278053 None:intergenic 45.0%
CATTCTAGTGTGGTCAATCG+CGG + chr7_2:60278044-60278063 None:intergenic 45.0%
GCTACATACCCATTACACCA+TGG + chr7_2:60278147-60278166 None:intergenic 45.0%
GTGAAGCAGTGAACTAGTAC+TGG + chr7_2:60278590-60278609 None:intergenic 45.0%
ATCTTCAAAGCACACCTCTC+TGG + chr7_2:60278820-60278839 None:intergenic 45.0%
GACTTCAACTAACTCCTTGG+AGG - chr7_2:60278881-60278900 Msa1066300:intron 45.0%
! GCAATGGAGTGTTCAAAGCA+CGG + chr7_2:60278955-60278974 None:intergenic 45.0%
CTGTGATGTGTCCAATGGAT+GGG - chr7_2:60279119-60279138 Msa1066300:intron 45.0%
TGTGCTGTGTGTAGTTTCCT+TGG + chr7_2:60279243-60279262 None:intergenic 45.0%
AGTGCAAGGAGACACTGTTT+GGG - chr7_2:60279262-60279281 Msa1066300:intron 45.0%
!! ACATGGGAAGTTGATGGAAC+TGG - chr7_2:60279687-60279706 Msa1066300:CDS 45.0%
! GATGGAACTGGCTTAACAAC+AGG - chr7_2:60279699-60279718 Msa1066300:CDS 45.0%
TGTAGGATGCAATGCCTTGA+TGG + chr7_2:60280443-60280462 None:intergenic 45.0%
!! AAGGCATTGCATCCTACACT+AGG - chr7_2:60280445-60280464 Msa1066300:intron 45.0%
!!! CACTAGGCCTTTTAGCTTAC+TGG - chr7_2:60280461-60280480 Msa1066300:intron 45.0%
AGCGAGTCCAGTAAGCTAAA+AGG + chr7_2:60280471-60280490 None:intergenic 45.0%
ACTAAATGCATGAGCCCAAG+TGG - chr7_2:60280531-60280550 Msa1066300:intron 45.0%
!! CTGAAGGATAATGGACCTGA+GGG + chr7_2:60280810-60280829 None:intergenic 45.0%
!! TCTGAAGGATAATGGACCTG+AGG + chr7_2:60280811-60280830 None:intergenic 45.0%
ATACCTGCACTTCAAGAAGC+TGG + chr7_2:60280870-60280889 None:intergenic 45.0%
CCCAAAACTCTGCTGGATAA+TGG - chr7_2:60281047-60281066 Msa1066300:intron 45.0%
GAAAAGCTCATCCTCTTGCA+TGG + chr7_2:60281222-60281241 None:intergenic 45.0%
! GCAAGAGGATGAGCTTTTCA+AGG - chr7_2:60281223-60281242 Msa1066300:intron 45.0%
!!! ACACTCTGCTTTTTGCCATC+AGG - chr7_2:60281526-60281545 Msa1066300:intron 45.0%
!! ATGAAGCTTGTTGGACCTGA+AGG - chr7_2:60281680-60281699 Msa1066300:CDS 45.0%
!! TGAAGCTTGTTGGACCTGAA+GGG - chr7_2:60281681-60281700 Msa1066300:CDS 45.0%
GATAATTGTCTCTCCCCTTC+AGG + chr7_2:60281698-60281717 None:intergenic 45.0%
AAACCTCCCATATTGCTGAC+TGG + chr7_2:60281733-60281752 None:intergenic 45.0%
TCAGCAATATGGGAGGTTTG+CGG - chr7_2:60281734-60281753 Msa1066300:intron 45.0%
!! ATGGACCTTGAAGAGCATTC+TGG - chr7_2:60281998-60282017 Msa1066300:intron 45.0%
CTGTTCCAGAATGCTCTTCA+AGG + chr7_2:60282006-60282025 None:intergenic 45.0%
!! TGAAGAGCATTCTGGAACAG+AGG - chr7_2:60282006-60282025 Msa1066300:intron 45.0%
!! CGTACTGTTTGCTATCTTCC+TGG + chr7_2:60282075-60282094 None:intergenic 45.0%
CAGAATGGCAAATGACTCAG+AGG - chr7_2:60282236-60282255 Msa1066300:intron 45.0%
CAGCACGCCCTTAAAAATTG+GGG - chr7_2:60282583-60282602 Msa1066300:five_prime_UTR 45.0%
GGCCTGAAAACAGCAACTGA+TGG - chr7_2:60276999-60277018 Msa1066300:intron 50.0%
GGATCTTGCAACACCCTCAT+TGG + chr7_2:60277278-60277297 None:intergenic 50.0%
ACCAACACATGGATGACCAC+TGG + chr7_2:60277707-60277726 None:intergenic 50.0%
ATTGCGGCTCTATATCGCTG+TGG - chr7_2:60277989-60278008 Msa1066300:intron 50.0%
! GCACACCTCTCTGGAAAAAC+AGG + chr7_2:60278811-60278830 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+CGG + chr7_2:60279053-60279072 None:intergenic 50.0%
GTCTCCTGTGATGTGTCCAA+TGG - chr7_2:60279114-60279133 Msa1066300:intron 50.0%
CCATCCATTGGACACATCAC+AGG + chr7_2:60279121-60279140 None:intergenic 50.0%
CCTGTGATGTGTCCAATGGA+TGG - chr7_2:60279118-60279137 Msa1066300:intron 50.0%
CTAAACGGAGACCCATCCAT+TGG + chr7_2:60279133-60279152 None:intergenic 50.0%
ACTACACACAGCACAGTGCA+AGG - chr7_2:60279248-60279267 Msa1066300:CDS 50.0%
CAGTGCAAGGAGACACTGTT+TGG - chr7_2:60279261-60279280 Msa1066300:intron 50.0%
!! AGGAGACACTGTTTGGGTTG+AGG - chr7_2:60279268-60279287 Msa1066300:intron 50.0%
!! GGAGACACTGTTTGGGTTGA+GGG - chr7_2:60279269-60279288 Msa1066300:intron 50.0%
TGCATGTCTGGATTTGTGGC+TGG - chr7_2:60279553-60279572 Msa1066300:intron 50.0%
GAGCACGTGGAAAGCTCATA+TGG + chr7_2:60280326-60280345 None:intergenic 50.0%
TTGAACCAGAACTGAGCACG+TGG + chr7_2:60280339-60280358 None:intergenic 50.0%
CTCAGTTTCTGTTGTCCCTC+AGG - chr7_2:60280792-60280811 Msa1066300:intron 50.0%
AAGCCAGCTTCTTGAAGTGC+AGG - chr7_2:60280864-60280883 Msa1066300:intron 50.0%
TTGCATGGCTATGGTCCTCA+AGG + chr7_2:60281207-60281226 None:intergenic 50.0%
CTCATCCTCTTGCATGGCTA+TGG + chr7_2:60281216-60281235 None:intergenic 50.0%
!! GAAGCTTGTTGGACCTGAAG+GGG - chr7_2:60281682-60281701 Msa1066300:CDS 50.0%
TGTCCAGTCAGCAATATGGG+AGG - chr7_2:60281727-60281746 Msa1066300:intron 50.0%
CTTCATGTCAAGTGAGTGCC+AGG - chr7_2:60281791-60281810 Msa1066300:intron 50.0%
! GGCCCTTATCATTGATAGCC+AGG - chr7_2:60282054-60282073 Msa1066300:intron 50.0%
!!! TGCTGTTTTCAGGCCCCGTT+TGG + chr7_2:60276994-60277013 None:intergenic 55.0%
! GATGGTAGAGCGTTTGCGCA+AGG - chr7_2:60277373-60277392 Msa1066300:intron 55.0%
GCCAGTGGTCATCCATGTGT+TGG - chr7_2:60277703-60277722 Msa1066300:CDS 55.0%
GCTTTCCACGTGCTCAGTTC+TGG - chr7_2:60280331-60280350 Msa1066300:intron 55.0%
!!! CCACTGTTTTCGGTGCCTGA+TGG + chr7_2:60281080-60281099 None:intergenic 55.0%
!! CCATCAGGCACCGAAAACAG+TGG - chr7_2:60281077-60281096 Msa1066300:intron 55.0%
GAGGACCATAGCCATGCAAG+AGG - chr7_2:60281208-60281227 Msa1066300:intron 55.0%
GTGACCAAGGCTGGAGCTAA+GGG + chr7_2:60281303-60281322 None:intergenic 55.0%
AGTGACCAAGGCTGGAGCTA+AGG + chr7_2:60281304-60281323 None:intergenic 55.0%
GCAGTTTCAGTGACCAAGGC+TGG + chr7_2:60281312-60281331 None:intergenic 55.0%
TGGGAGGTTTGCGGTGATTC+TGG - chr7_2:60281743-60281762 Msa1066300:intron 55.0%
GCAAATGGGGTGGAGCTACG+AGG - chr7_2:60276607-60276626 Msa1066300:CDS 60.0%
TGGATGACCACTGGCCAACC+AGG + chr7_2:60277698-60277717 None:intergenic 60.0%
! TGGGTTGAGGGTCTTGTCCC+TGG - chr7_2:60279281-60279300 Msa1066300:intron 60.0%
GGTTCCCTTAGCTCCAGCCT+TGG - chr7_2:60281296-60281315 Msa1066300:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 60276287 60282662 60276287 ID=Msa1066300;Name=Msa1066300
chr7_2 mRNA 60276287 60282662 60276287 ID=Msa1066300-mRNA-1;Parent=Msa1066300;Name=Msa1066300-mRNA-1;_AED=0.09;_eAED=0.09;_QI=156|0.92|1|1|0.92|0.93|15|267|538
chr7_2 exon 60276287 60276710 60276287 ID=Msa1066300-mRNA-1:exon:11805;Parent=Msa1066300-mRNA-1
chr7_2 exon 60276860 60276955 60276860 ID=Msa1066300-mRNA-1:exon:11804;Parent=Msa1066300-mRNA-1
chr7_2 exon 60277148 60277263 60277148 ID=Msa1066300-mRNA-1:exon:11803;Parent=Msa1066300-mRNA-1
chr7_2 exon 60277684 60277926 60277684 ID=Msa1066300-mRNA-1:exon:11802;Parent=Msa1066300-mRNA-1
chr7_2 exon 60278064 60278135 60278064 ID=Msa1066300-mRNA-1:exon:11801;Parent=Msa1066300-mRNA-1
chr7_2 exon 60278248 60278304 60278248 ID=Msa1066300-mRNA-1:exon:11800;Parent=Msa1066300-mRNA-1
chr7_2 exon 60278960 60279024 60278960 ID=Msa1066300-mRNA-1:exon:11799;Parent=Msa1066300-mRNA-1
chr7_2 exon 60279199 60279279 60279199 ID=Msa1066300-mRNA-1:exon:11798;Parent=Msa1066300-mRNA-1
chr7_2 exon 60279626 60279739 60279626 ID=Msa1066300-mRNA-1:exon:11797;Parent=Msa1066300-mRNA-1
chr7_2 exon 60279906 60280018 60279906 ID=Msa1066300-mRNA-1:exon:11796;Parent=Msa1066300-mRNA-1
chr7_2 exon 60280559 60280641 60280559 ID=Msa1066300-mRNA-1:exon:11795;Parent=Msa1066300-mRNA-1
chr7_2 exon 60281337 60281442 60281337 ID=Msa1066300-mRNA-1:exon:11794;Parent=Msa1066300-mRNA-1
chr7_2 exon 60281538 60281712 60281538 ID=Msa1066300-mRNA-1:exon:11793;Parent=Msa1066300-mRNA-1
chr7_2 exon 60282252 60282342 60282252 ID=Msa1066300-mRNA-1:exon:11792;Parent=Msa1066300-mRNA-1
chr7_2 exon 60282459 60282662 60282459 ID=Msa1066300-mRNA-1:exon:11791;Parent=Msa1066300-mRNA-1
chr7_2 five_prime_UTR 60282507 60282662 60282507 ID=Msa1066300-mRNA-1:five_prime_utr;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60282459 60282506 60282459 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60282252 60282342 60282252 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60281538 60281712 60281538 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60281337 60281442 60281337 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60280559 60280641 60280559 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60279906 60280018 60279906 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60279626 60279739 60279626 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60279199 60279279 60279199 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60278960 60279024 60278960 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60278248 60278304 60278248 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60278064 60278135 60278064 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60277684 60277926 60277684 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60277148 60277263 60277148 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60276860 60276955 60276860 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 CDS 60276554 60276710 60276554 ID=Msa1066300-mRNA-1:cds;Parent=Msa1066300-mRNA-1
chr7_2 three_prime_UTR 60276287 60276553 60276287 ID=Msa1066300-mRNA-1:three_prime_utr;Parent=Msa1066300-mRNA-1
Gene Sequence

>Msa1066300

ATGGCGAACCCAGAAGCAAAGCTCGAAACTTTCTTGCAGTGGCTACAGGCAAATGGGGTGGAGCTACGAGGCTGCAATATCAAGTACTGTGATTCCAGAAAAGGGTTTGGCATATTTTGTGATAAAGATGTTTCTGATGGGATTCTGTTGGTTGTTCCACTAGAGTTAGCAATTACTCCAATGAGGGTGTTGCAAGATCCTTTTCTAGGACCAGAATGTAGAGCTTTGTTTGAAGAAGGAGATGTAGATGACAGGCTCTTAATGATGTTGTTATTGATGGTAGAGCGTTTGCGCAAGGATTCTCTATGGAAACCGTACCTTGATATGCTTCCAACCACTTTTGGAAATACACTTTGGTTTAGTGACGAGGAACTTCAAGAGCTAAGAGGAACAACATTATATCGTGCAACTCAATTACAGAAGAAAAGCCTGTTGAATTTGTATGAAACTAAAGTGAAGGATAGAGTGAAGAAACTTTTGACTCTTGACGGAGATTCTGAGATGGCAAATTCAGTATTTTGGAGCCGTGCTTTGAACACTCCATTGCCTCGTTCTTATGTATTTCCTGAGATGCAAGATGTTCATCAGAGTTGCACTCCAAAAGCTGATGAAAACGGAAGCCAAGTCACAAAATCTGACGATCTAACCAAGGAAACTACACACAGCACAGTGCAAGGAGACACTGTTTGGGTTGAGGGTCTTGTCCCTGGCATTGACTTTTGCAATCATGATCTGAAGCCAATAGCAACATGGGAAGTTGATGGAACTGGCTTAACAACAGGAGTTCCTGTCTCCATGTATCTTCTTTCCGCTGCTCAAAGTCCCTTGCAGATTGATCGAGAAATTTCCATTAGTTATGGCAACAAGGGAAATGAGGAACTTCTATATCTGTATGGTTTTGTCATTGATGGTAACTCAGATGACTACCTCATGGTCCATTATCCTTCAGAAGCAATCAATACTATTTCTTTTTCAGAGTCTAAAAGCCAGCTTCTTGAAGTGCAGAAGGCTGAAATGAGATGTCTTTTACCCAAAACTCTGCTGGATAATGGATTTTTTCCATCAGGCACCGAAAACAGTGGAGAAAATAACAAGAGCAACAAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAGACTCCATCTTATGTAGACAAGCTTGTTTTTCCTGAGAAATTTATGGCTACCTTGAGGACCATAGCCATGCAAGAGGATGAGCTTTTCAAGGTTTCATCAATGCTTGAAGAGCTTGTTGGACCTGAAGGGGAGAGACAATTATCAGATATAGATGTCCAGTCAGCAATATGGGAGGTTTGCGGTGATTCTGGAGCTTTACAAGTGCTAGTTGATCTTCTTCATGTCAAGTTAATGGACCTTGAAGAGCATTCTGGAACAGAGGAAAATGACTTTGAATTGCTCAAGAAGGCCCTTATCATTGATAGCCAGGAAGATAGCAAACAAATGGCAAATGACTCAGAGGAAACAACATTGATGACTAGAAACAAATGGTCTGCTATTGTATATAGACGAGGTCAAAAGCAGCTAACTCGATTATTCTTGAAAGAAGCAGAACATGCTCTGCAGTTATCGATGAGCGAAGAGATGAGTGTTCCTTGA

Protein sequence

>Msa1066300

MANPEAKLETFLQWLQANGVELRGCNIKYCDSRKGFGIFCDKDVSDGILLVVPLELAITPMRVLQDPFLGPECRALFEEGDVDDRLLMMLLLMVERLRKDSLWKPYLDMLPTTFGNTLWFSDEELQELRGTTLYRATQLQKKSLLNLYETKVKDRVKKLLTLDGDSEMANSVFWSRALNTPLPRSYVFPEMQDVHQSCTPKADENGSQVTKSDDLTKETTHSTVQGDTVWVEGLVPGIDFCNHDLKPIATWEVDGTGLTTGVPVSMYLLSAAQSPLQIDREISISYGNKGNEELLYLYGFVIDGNSDDYLMVHYPSEAINTISFSESKSQLLEVQKAEMRCLLPKTLLDNGFFPSGTENSGENNKSNKVCNYSWSGQRKTPSYVDKLVFPEKFMATLRTIAMQEDELFKVSSMLEELVGPEGERQLSDIDVQSAIWEVCGDSGALQVLVDLLHVKLMDLEEHSGTEENDFELLKKALIIDSQEDSKQMANDSEETTLMTRNKWSAIVYRRGQKQLTRLFLKEAEHALQLSMSEEMSVP*