Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508110 | XP_039687338.1 | 86.096 | 187 | 15 | 3 | 94 | 279 | 16 | 192 | 1.90e-96 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508110 | A0A396IV19 | 86.096 | 187 | 15 | 3 | 94 | 279 | 16 | 192 | 9.09e-97 | 295 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0375630 | Msa0508110 | 0.807579 | 4.718976e-50 | -8.615850e-47 |
| Msa0397780 | Msa0508110 | 0.800175 | 1.630548e-48 | -8.615850e-47 |
| Msa0351040 | Msa0508110 | 0.803899 | 2.797015e-49 | -8.615850e-47 |
| Msa0508110 | Msa0999120 | 0.826632 | 2.438354e-54 | -8.615850e-47 |
| Msa0508110 | Msa1005880 | 0.803175 | 3.950907e-49 | -8.615850e-47 |
| Msa0508110 | Msa1066300 | 0.806167 | 9.379698e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508110 | MtrunA17_Chr3g0112331 | 86.096 | 187 | 15 | 3 | 94 | 279 | 16 | 192 | 1.75e-100 | 295 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 114 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACATCAACACCAATATTT+TGG | 0.162957 | 3_4:-55836078 | None:intergenic |
| CACCACCACCTTCGTTATTT+TGG | 0.175913 | 3_4:-55836042 | None:intergenic |
| CACCACCGCCTTCATTATTT+TGG | 0.243006 | 3_4:-55836006 | None:intergenic |
| GGACCAGTGGGAACTATTTC+TGG | 0.246391 | 3_4:+55836235 | Msa0508110:CDS |
| GAGAGTTAGATGATGTAAAT+TGG | 0.252954 | 3_4:+55835942 | Msa0508110:CDS |
| ACAAATTCTAGGACAAGTTT+TGG | 0.286354 | 3_4:+55835688 | Msa0508110:CDS |
| GAAGAGCAGACTCGGATAAT+TGG | 0.292971 | 3_4:-55834596 | None:intergenic |
| TGCAGCTACTCTTGTGGAAT+TGG | 0.325826 | 3_4:+55833252 | Msa0508110:intron |
| TTGTCGTTCTAGGACGGATA+TGG | 0.339592 | 3_4:+55834455 | Msa0508110:intron |
| GGGTCACTTGGGGCATGGTC+AGG | 0.357305 | 3_4:+55835754 | Msa0508110:CDS |
| AAAACTTGTCCTAGAATTTG+TGG | 0.370548 | 3_4:-55835686 | None:intergenic |
| GAAGTTAATAACCAAAATAT+TGG | 0.373920 | 3_4:+55836067 | Msa0508110:CDS |
| TCATTATTAACCAACACAAC+AGG | 0.377212 | 3_4:-55835848 | None:intergenic |
| GGTAACAACTGATGAAGAAC+TGG | 0.377571 | 3_4:-55833894 | None:intergenic |
| TTCGCGTCTTTGTTGTCTAC+TGG | 0.378729 | 3_4:+55836462 | Msa0508110:three_prime_UTR |
| CTGATCCTCCTATATATTCC+TGG | 0.381870 | 3_4:-55834543 | None:intergenic |
| AATCGACTTCTACAAGTGTT+TGG | 0.388686 | 3_4:-55836386 | None:intergenic |
| CCGAAACGATCAATATAGTC+TGG | 0.399362 | 3_4:-55834573 | None:intergenic |
| AATTGGATTTGTTTCAAGTT+CGG | 0.406478 | 3_4:+55833269 | Msa0508110:CDS |
| CTTGGAAGATGACGTAGCTT+TGG | 0.408955 | 3_4:+55834491 | Msa0508110:CDS |
| GGGCCACTTTGGAAATGAAC+AGG | 0.413907 | 3_4:+55835781 | Msa0508110:CDS |
| TCTTCATCAGTTGTTACCTC+AGG | 0.425773 | 3_4:+55833899 | Msa0508110:CDS |
| GATTCTACTTGAGACTTACT+AGG | 0.428119 | 3_4:+55836277 | Msa0508110:exon |
| TATATATTCCTGGCAACTGC+TGG | 0.438744 | 3_4:-55834533 | None:intergenic |
| CTTGGGGCATGGTCAGGGAG+AGG | 0.441366 | 3_4:+55835760 | Msa0508110:CDS |
| CCAGACTATATTGATCGTTT+CGG | 0.446988 | 3_4:+55834573 | Msa0508110:CDS |
| GATTCACTTTGAAGAGGGAT+TGG | 0.448558 | 3_4:+55835892 | Msa0508110:CDS |
| GGACGCGTACCACAAATTCT+AGG | 0.451331 | 3_4:+55835677 | Msa0508110:CDS |
| TTGTTTCAAGTTCGGACTGA+TGG | 0.454653 | 3_4:+55833277 | Msa0508110:CDS |
| AGAGTTAGATGATGTAAATT+GGG | 0.455164 | 3_4:+55835943 | Msa0508110:CDS |
| TACTCCAAGCTTTCTCTAGC+AGG | 0.455826 | 3_4:+55835656 | Msa0508110:CDS |
| TCATCTAACTCTCCTGCATC+AGG | 0.458002 | 3_4:-55835932 | None:intergenic |
| GGACGGATATGGCTCATGAT+TGG | 0.459276 | 3_4:+55834466 | Msa0508110:intron |
| AATGAAAACAATGATATTGC+TGG | 0.461484 | 3_4:+55836142 | Msa0508110:CDS |
| GGGGCAGCAAGAGGGTCACT+TGG | 0.463334 | 3_4:+55835742 | Msa0508110:CDS |
| GGTCAGGGAGAGGGCCACTT+TGG | 0.466677 | 3_4:+55835770 | Msa0508110:CDS |
| CACAGGATTGTTACCTTCCA+CGG | 0.472590 | 3_4:-55836176 | None:intergenic |
| GGGCAGCAAGAGGGTCACTT+GGG | 0.473436 | 3_4:+55835743 | Msa0508110:CDS |
| GAATAAAACAGACACAGTTC+AGG | 0.480194 | 3_4:-55836442 | None:intergenic |
| GAAGGGGAGGATGTTGATGA+AGG | 0.480853 | 3_4:+55835869 | Msa0508110:CDS |
| AAACGGAGAGGGGCAGCAAG+AGG | 0.485710 | 3_4:+55835733 | Msa0508110:CDS |
| GGAAATGAACAGGGAGATCA+AGG | 0.490724 | 3_4:+55835791 | Msa0508110:CDS |
| GAGGGATTGGACGTTGTTGA+AGG | 0.495547 | 3_4:+55835905 | Msa0508110:CDS |
| AACAATGACAGTATTGTTGT+GGG | 0.497690 | 3_4:+55836118 | Msa0508110:CDS |
| GGTCACTTGGGGCATGGTCA+GGG | 0.499474 | 3_4:+55835755 | Msa0508110:CDS |
| TTGGGAGAGGGAAACGGAGA+GGG | 0.501349 | 3_4:+55835722 | Msa0508110:CDS |
| GCTCGATTCCAGCAGTTGCC+AGG | 0.502230 | 3_4:+55834525 | Msa0508110:CDS |
| GTTGTGTTGGTTAATAATGA+AGG | 0.506995 | 3_4:+55835851 | Msa0508110:CDS |
| AATGATATTGCTGGTGAAGA+TGG | 0.509985 | 3_4:+55836151 | Msa0508110:CDS |
| GAATCCTCATCAGCTGCTCC+AGG | 0.511865 | 3_4:-55836259 | None:intergenic |
| AGCAGTTGCCAGGAATATAT+AGG | 0.512850 | 3_4:+55834535 | Msa0508110:CDS |
| TAACAATGACAGTATTGTTG+TGG | 0.515281 | 3_4:+55836117 | Msa0508110:CDS |
| CATCATCATCCAACCTCCAT+TGG | 0.517441 | 3_4:+55833866 | Msa0508110:CDS |
| TTGGGGCATGGTCAGGGAGA+GGG | 0.521108 | 3_4:+55835761 | Msa0508110:CDS |
| GTTGAAGGGCTGCCTGATGC+AGG | 0.521121 | 3_4:+55835920 | Msa0508110:CDS |
| GAAGGGATTCACTTTGAAGA+GGG | 0.524414 | 3_4:+55835887 | Msa0508110:CDS |
| TACTGTTGCTGAAGCTGCTG+TGG | 0.532759 | 3_4:+55836213 | Msa0508110:CDS |
| GAACACTTGGGAGAGGGAAA+CGG | 0.535238 | 3_4:+55835716 | Msa0508110:CDS |
| AACGGAGAGGGGCAGCAAGA+GGG | 0.536397 | 3_4:+55835734 | Msa0508110:CDS |
| TACTTGAGACTTACTAGGAA+CGG | 0.538953 | 3_4:+55836282 | Msa0508110:exon |
| TGCAGAGGACCCTGTTGTGT+TGG | 0.540063 | 3_4:+55835838 | Msa0508110:CDS |
| AGATGACGTAGCTTTGGTTA+CGG | 0.540760 | 3_4:+55834497 | Msa0508110:CDS |
| CTCCCTGTTCATTTCCAAAG+TGG | 0.541165 | 3_4:-55835784 | None:intergenic |
| CCAAAATATTGGTGTTGATG+TGG | 0.542905 | 3_4:+55836078 | Msa0508110:CDS |
| ATTTACAACATTCAACTGCC+AGG | 0.544111 | 3_4:-55836515 | None:intergenic |
| GCGTCCTGCTAGAGAAAGCT+TGG | 0.546700 | 3_4:-55835660 | None:intergenic |
| GAAGCTGCTGTGGGACCAGT+GGG | 0.550999 | 3_4:+55836223 | Msa0508110:CDS |
| TGGACCTGGAGCAGCTGATG+AGG | 0.553677 | 3_4:+55836255 | Msa0508110:CDS |
| CAAGAGGGTCACTTGGGGCA+TGG | 0.567164 | 3_4:+55835749 | Msa0508110:CDS |
| GAACAAGAACACTTGGGAGA+GGG | 0.569355 | 3_4:+55835710 | Msa0508110:CDS |
| CAAAGCTACGTCATCTTCCA+AGG | 0.571154 | 3_4:-55834490 | None:intergenic |
| CTGGGATGACCAATGGAGGT+TGG | 0.575966 | 3_4:-55833875 | None:intergenic |
| AAGGGGAGGATGTTGATGAA+GGG | 0.578659 | 3_4:+55835870 | Msa0508110:CDS |
| GGAACAAGAACACTTGGGAG+AGG | 0.583256 | 3_4:+55835709 | Msa0508110:CDS |
| AGGGATTGGACGTTGTTGAA+GGG | 0.583951 | 3_4:+55835906 | Msa0508110:CDS |
| CGAAACGATCAATATAGTCT+GGG | 0.587927 | 3_4:-55834572 | None:intergenic |
| TGAAGGGATTCACTTTGAAG+AGG | 0.588690 | 3_4:+55835886 | Msa0508110:CDS |
| TGCATGTGCAGCTACTCTTG+TGG | 0.590353 | 3_4:+55833246 | Msa0508110:intron |
| ACTTACTCGAAGAGCAGACT+CGG | 0.596614 | 3_4:-55834604 | None:intergenic |
| TATGGCTCATGATTGGACCT+TGG | 0.596845 | 3_4:+55834473 | Msa0508110:CDS |
| TGAAGCTGCTGTGGGACCAG+TGG | 0.597581 | 3_4:+55836222 | Msa0508110:CDS |
| GGTGAAGATGGTTCCGTGGA+AGG | 0.602608 | 3_4:+55836163 | Msa0508110:CDS |
| CATTATTAACCAACACAACA+GGG | 0.603486 | 3_4:-55835847 | None:intergenic |
| GCTGTTGACCAAAATAATGA+AGG | 0.608693 | 3_4:+55835998 | Msa0508110:CDS |
| GGCAGCAAGAGGGTCACTTG+GGG | 0.608966 | 3_4:+55835744 | Msa0508110:CDS |
| GTGGGAACTATTTCTGGACC+TGG | 0.612027 | 3_4:+55836241 | Msa0508110:CDS |
| TGAAGAACTGGGATGACCAA+TGG | 0.614529 | 3_4:-55833882 | None:intergenic |
| GGTCCAGAAATAGTTCCCAC+TGG | 0.624087 | 3_4:-55836238 | None:intergenic |
| AAATAACGAAGGTGGTGGTG+TGG | 0.626268 | 3_4:+55836045 | Msa0508110:CDS |
| TTGTGTTGGTTAATAATGAA+GGG | 0.630403 | 3_4:+55835852 | Msa0508110:CDS |
| AACCAAAATAACGAAGGTGG+TGG | 0.633748 | 3_4:+55836040 | Msa0508110:CDS |
| TGGGAGAGGGAAACGGAGAG+GGG | 0.634801 | 3_4:+55835723 | Msa0508110:CDS |
| GTTGGTTAATAATGAAGGGG+AGG | 0.638090 | 3_4:+55835856 | Msa0508110:CDS |
| TGAAGGTGGATGAATAAATG+TGG | 0.638167 | 3_4:-55833845 | None:intergenic |
| ACTGTTGCTGAAGCTGCTGT+GGG | 0.640278 | 3_4:+55836214 | Msa0508110:CDS |
| TGTGTTGGTTAATAATGAAG+GGG | 0.645209 | 3_4:+55835853 | Msa0508110:CDS |
| AGTTGCCAGGAATATATAGG+AGG | 0.647902 | 3_4:+55834538 | Msa0508110:CDS |
| GACCAAAATAATGAAGGCGG+TGG | 0.651627 | 3_4:+55836004 | Msa0508110:CDS |
| TGGAGGTTGGATGATGATGA+AGG | 0.653171 | 3_4:-55833862 | None:intergenic |
| GACAACCAAAATAACGAAGG+TGG | 0.664413 | 3_4:+55836037 | Msa0508110:CDS |
| CTTGGGAGAGGGAAACGGAG+AGG | 0.667757 | 3_4:+55835721 | Msa0508110:CDS |
| AGGTTGGATGATGATGAAGG+TGG | 0.669936 | 3_4:-55833859 | None:intergenic |
| CGTGGAAGGTAACAATCCTG+TGG | 0.674821 | 3_4:+55836177 | Msa0508110:CDS |
| TGCTGGTGAAGATGGTTCCG+TGG | 0.675874 | 3_4:+55836159 | Msa0508110:CDS |
| TTGATTCAAATTCCACTGTG+CGG | 0.679419 | 3_4:+55836562 | Msa0508110:three_prime_UTR |
| CCAGAATCGGAGCCGCACAG+TGG | 0.686831 | 3_4:-55836574 | None:intergenic |
| ACAATGACAGTATTGTTGTG+GGG | 0.688330 | 3_4:+55836119 | Msa0508110:CDS |
| GGCCACTTTGGAAATGAACA+GGG | 0.690549 | 3_4:+55835782 | Msa0508110:CDS |
| GTAACAACTGATGAAGAACT+GGG | 0.720363 | 3_4:-55833893 | None:intergenic |
| AGAACTGGGATGACCAATGG+AGG | 0.721883 | 3_4:-55833879 | None:intergenic |
| GCTGACAACCAAAATAACGA+AGG | 0.722378 | 3_4:+55836034 | Msa0508110:CDS |
| AATGAACAGGGAGATCAAGG+AGG | 0.734386 | 3_4:+55835794 | Msa0508110:CDS |
| GTTGACCAAAATAATGAAGG+CGG | 0.750267 | 3_4:+55836001 | Msa0508110:CDS |
| TTGGGTCGATGTGTACAATG+TGG | 0.813858 | 3_4:+55835961 | Msa0508110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTATCAATTCTT+TGG | + | chr3_4:55834858-55834877 | Msa0508110:intron | 10.0% |
| !! | ATATAATATAATGTATCTTA+TGG | + | chr3_4:55835464-55835483 | Msa0508110:intron | 10.0% |
| !! | ATAACACAAGAATTTAAATA+CGG | - | chr3_4:55832875-55832894 | None:intergenic | 15.0% |
| !!! | ACACTTAAATTTAACTTTTT+TGG | - | chr3_4:55833519-55833538 | None:intergenic | 15.0% |
| !! | AAAGAAAATTATTATAGGAA+AGG | - | chr3_4:55833801-55833820 | None:intergenic | 15.0% |
| !! | TGAGAAAAGAAAATTATTAT+AGG | - | chr3_4:55833806-55833825 | None:intergenic | 15.0% |
| !!! | TATAATAATTTTCTTTTCTC+AGG | + | chr3_4:55833805-55833824 | Msa0508110:intron | 15.0% |
| !!! | TTTTTGAATGTATATGTTAA+TGG | + | chr3_4:55834352-55834371 | Msa0508110:intron | 15.0% |
| !!! | TTTTGAATGTATATGTTAAT+GGG | + | chr3_4:55834353-55834372 | Msa0508110:intron | 15.0% |
| !! | TGTATAAAGTCTAAAAATAA+GGG | - | chr3_4:55834672-55834691 | None:intergenic | 15.0% |
| !! | ATGTATAAAGTCTAAAAATA+AGG | - | chr3_4:55834673-55834692 | None:intergenic | 15.0% |
| !! | TGAAATGTAAAATATAGAAT+AGG | - | chr3_4:55834811-55834830 | None:intergenic | 15.0% |
| !! | GTATTTAAATTCTTGTGTTA+TGG | + | chr3_4:55832874-55832893 | Msa0508110:intron | 20.0% |
| !! | TTTCTAATTGTCCAATAATT+TGG | + | chr3_4:55832948-55832967 | Msa0508110:intron | 20.0% |
| !!! | ATTTCAATAATGTTTGTTAC+TGG | + | chr3_4:55832986-55833005 | Msa0508110:intron | 20.0% |
| !!! | TTGATTGTACTTGTAAATTT+TGG | + | chr3_4:55833314-55833333 | Msa0508110:intron | 20.0% |
| !!! | TATGAAATTTGAAACTTGAA+GGG | - | chr3_4:55833371-55833390 | None:intergenic | 20.0% |
| !!! | ATATGAAATTTGAAACTTGA+AGG | - | chr3_4:55833372-55833391 | None:intergenic | 20.0% |
| !! | TTACCTATGAGTTAAAATAT+AGG | + | chr3_4:55833576-55833595 | Msa0508110:intron | 20.0% |
| !! | TACCTATGAGTTAAAATATA+GGG | + | chr3_4:55833577-55833596 | Msa0508110:intron | 20.0% |
| !!! | TTAATTTTATTTGTCGTTCT+AGG | + | chr3_4:55834445-55834464 | Msa0508110:intron | 20.0% |
| !! | TGTAAAATATAGAATAGGAT+AGG | - | chr3_4:55834806-55834825 | None:intergenic | 20.0% |
| !! | AGAAACATGAAGTAAAAAAT+TGG | + | chr3_4:55834943-55834962 | Msa0508110:intron | 20.0% |
| !! | TTCAAAATGTCTAATTCTAA+GGG | - | chr3_4:55835134-55835153 | None:intergenic | 20.0% |
| !! | TCTAACATTATAATCATCAT+AGG | - | chr3_4:55835327-55835346 | None:intergenic | 20.0% |
| !!! | ATTTCATTTTAACAATGTGA+AGG | - | chr3_4:55835350-55835369 | None:intergenic | 20.0% |
| !! | AATTGAAAGTTAAAAACAAC+AGG | + | chr3_4:55835514-55835533 | Msa0508110:intron | 20.0% |
| !!! | AGATAACTTTGTTTTTAGTT+TGG | + | chr3_4:55835561-55835580 | Msa0508110:intron | 20.0% |
| !! | GAAGTTAATAACCAAAATAT+TGG | + | chr3_4:55836067-55836086 | Msa0508110:CDS | 20.0% |
| !!! | GTGATTTTTTTTTACTTACT+AGG | + | chr3_4:55836316-55836335 | Msa0508110:three_prime_UTR | 20.0% |
| !!! | TTTTTTTTACTTACTAGGAA+CGG | + | chr3_4:55836321-55836340 | Msa0508110:three_prime_UTR | 20.0% |
| !!! | TTTTGACTTCTTATTCTTTT+CGG | + | chr3_4:55836485-55836504 | Msa0508110:three_prime_UTR | 20.0% |
| ! | CATGAGATAATCCAAATTAT+TGG | - | chr3_4:55832962-55832981 | None:intergenic | 25.0% |
| ! | TGATACATATAACTGTAGAA+TGG | + | chr3_4:55833180-55833199 | Msa0508110:intron | 25.0% |
| !!! | AATTGGATTTGTTTCAAGTT+CGG | + | chr3_4:55833269-55833288 | Msa0508110:CDS | 25.0% |
| !!! | TACCCTATATTTTAACTCAT+AGG | - | chr3_4:55833582-55833601 | None:intergenic | 25.0% |
| ! | TGTGTTAATCAAGATTTAGT+AGG | + | chr3_4:55834046-55834065 | Msa0508110:intron | 25.0% |
| ! | TGTGTTAATCAAGATTCATT+AGG | + | chr3_4:55834225-55834244 | Msa0508110:intron | 25.0% |
| ! | GCTTGATTAACAAAATCTAT+TGG | - | chr3_4:55834280-55834299 | None:intergenic | 25.0% |
| !! | AGTCTAAAAATAAGGGTATA+GGG | - | chr3_4:55834665-55834684 | None:intergenic | 25.0% |
| !! | AAGTCTAAAAATAAGGGTAT+AGG | - | chr3_4:55834666-55834685 | None:intergenic | 25.0% |
| ! | AATATAGAATAGGATAGGAT+AGG | - | chr3_4:55834801-55834820 | None:intergenic | 25.0% |
| !!! | TTTTACTTCATGTTTCTGAT+TGG | - | chr3_4:55834940-55834959 | None:intergenic | 25.0% |
| ! | GAAGTAAAAAATTGGATAAC+AGG | + | chr3_4:55834951-55834970 | Msa0508110:intron | 25.0% |
| !! | TGGATAACAGGTTAAAATTT+TGG | + | chr3_4:55834963-55834982 | Msa0508110:intron | 25.0% |
| ! | TCAAAATGTCTAATTCTAAG+GGG | - | chr3_4:55835133-55835152 | None:intergenic | 25.0% |
| ! | GTTCAAAATGTCTAATTCTA+AGG | - | chr3_4:55835135-55835154 | None:intergenic | 25.0% |
| ! | TTAAGAACAACAGGAAAAAT+TGG | - | chr3_4:55835157-55835176 | None:intergenic | 25.0% |
| ! | ACATTATAATCATCATAGGT+TGG | - | chr3_4:55835323-55835342 | None:intergenic | 25.0% |
| ! | TGATAACTTGGATACATTTA+TGG | - | chr3_4:55835431-55835450 | None:intergenic | 25.0% |
| !!! | TTGTGTTGGTTAATAATGAA+GGG | + | chr3_4:55835852-55835871 | Msa0508110:CDS | 25.0% |
| ! | AGAGTTAGATGATGTAAATT+GGG | + | chr3_4:55835943-55835962 | Msa0508110:CDS | 25.0% |
| ! | AATGAAAACAATGATATTGC+TGG | + | chr3_4:55836142-55836161 | Msa0508110:CDS | 25.0% |
| !! | TAAATTTTGGCAACGATGTT+TGG | + | chr3_4:55833327-55833346 | Msa0508110:intron | 30.0% |
| ! | TTGCCTTTTATCCTTTACTT+AGG | + | chr3_4:55833396-55833415 | Msa0508110:intron | 30.0% |
| ! | TGCCTTTTATCCTTTACTTA+GGG | + | chr3_4:55833397-55833416 | Msa0508110:intron | 30.0% |
| !! | AAAGGAGTATTCAGTTAAGT+TGG | - | chr3_4:55833783-55833802 | None:intergenic | 30.0% |
| ! | GTACGAAGTAATGATTTTTG+TGG | + | chr3_4:55834013-55834032 | Msa0508110:intron | 30.0% |
| ! | GTACGAAGTAATGATTTTTG+TGG | + | chr3_4:55834013-55834032 | Msa0508110:intron | 30.0% |
| ! | GTGTTTTCAGATTCAATCAA+TGG | + | chr3_4:55834329-55834348 | Msa0508110:intron | 30.0% |
| !! | TATGTTAATGGGTTTGTGAA+TGG | + | chr3_4:55834364-55834383 | Msa0508110:intron | 30.0% |
| !!! | TTTTATTTGTCGTTCTAGGA+CGG | + | chr3_4:55834449-55834468 | Msa0508110:intron | 30.0% |
| ! | TAAAAATAAGGGTATAGGGA+AGG | - | chr3_4:55834661-55834680 | None:intergenic | 30.0% |
| ! | TTGGCATTTTTCATAAACGA+AGG | - | chr3_4:55834921-55834940 | None:intergenic | 30.0% |
| ACTTACTACTATTACTGTGA+TGG | - | chr3_4:55835027-55835046 | None:intergenic | 30.0% | |
| GGAAAATCATTAAGAACAAC+AGG | - | chr3_4:55835166-55835185 | None:intergenic | 30.0% | |
| ATTCTTTGCGTGTTCATTAT+TGG | + | chr3_4:55835225-55835244 | Msa0508110:intron | 30.0% | |
| ATGAAATATGTGTGAGTTAG+TGG | + | chr3_4:55835363-55835382 | Msa0508110:intron | 30.0% | |
| !! | CAGATCTTATGTTGATAACT+TGG | - | chr3_4:55835443-55835462 | None:intergenic | 30.0% |
| !!! | TGAACTTTGTTTTTCAGTCA+AGG | + | chr3_4:55835633-55835652 | Msa0508110:intron | 30.0% |
| AAAACTTGTCCTAGAATTTG+TGG | - | chr3_4:55835689-55835708 | None:intergenic | 30.0% | |
| !!! | ACAAATTCTAGGACAAGTTT+TGG | + | chr3_4:55835688-55835707 | Msa0508110:CDS | 30.0% |
| CATTATTAACCAACACAACA+GGG | - | chr3_4:55835850-55835869 | None:intergenic | 30.0% | |
| TCATTATTAACCAACACAAC+AGG | - | chr3_4:55835851-55835870 | None:intergenic | 30.0% | |
| !! | GTTGTGTTGGTTAATAATGA+AGG | + | chr3_4:55835851-55835870 | Msa0508110:CDS | 30.0% |
| !! | TGTGTTGGTTAATAATGAAG+GGG | + | chr3_4:55835853-55835872 | Msa0508110:CDS | 30.0% |
| GAGAGTTAGATGATGTAAAT+TGG | + | chr3_4:55835942-55835961 | Msa0508110:CDS | 30.0% | |
| TAACAATGACAGTATTGTTG+TGG | + | chr3_4:55836117-55836136 | Msa0508110:CDS | 30.0% | |
| AACAATGACAGTATTGTTGT+GGG | + | chr3_4:55836118-55836137 | Msa0508110:CDS | 30.0% | |
| ! | ATTCTTTTCGGATAATAACC+TGG | + | chr3_4:55836497-55836516 | Msa0508110:three_prime_UTR | 30.0% |
| CACAGGATACTTAAAGCAAA+AGG | + | chr3_4:55833110-55833129 | Msa0508110:intron | 35.0% | |
| TTATAATCAAGTACCTGCTC+AGG | - | chr3_4:55833136-55833155 | None:intergenic | 35.0% | |
| GACCCTAAGTAAAGGATAAA+AGG | - | chr3_4:55833402-55833421 | None:intergenic | 35.0% | |
| !! | TATCTCTGCTTGTTATCTAC+TGG | + | chr3_4:55833431-55833450 | Msa0508110:intron | 35.0% |
| !! | ATTCAGTTAAGTTGGTGTTC+TGG | - | chr3_4:55833775-55833794 | None:intergenic | 35.0% |
| TGAAGGTGGATGAATAAATG+TGG | - | chr3_4:55833848-55833867 | None:intergenic | 35.0% | |
| GTAACAACTGATGAAGAACT+GGG | - | chr3_4:55833896-55833915 | None:intergenic | 35.0% | |
| CTCTTAAGTGTGAAAGAACT+GGG | - | chr3_4:55833943-55833962 | None:intergenic | 35.0% | |
| TCTCTTAAGTGTGAAAGAAC+TGG | - | chr3_4:55833944-55833963 | None:intergenic | 35.0% | |
| CTTTCACACTTAAGAGAGTA+TGG | + | chr3_4:55833947-55833966 | Msa0508110:intron | 35.0% | |
| CTGTTAAGTGTGAAAGAACT+GGG | - | chr3_4:55834122-55834141 | None:intergenic | 35.0% | |
| TCTGTTAAGTGTGAAAGAAC+TGG | - | chr3_4:55834123-55834142 | None:intergenic | 35.0% | |
| CTTTCACACTTAACAGAGTA+TGG | + | chr3_4:55834126-55834145 | Msa0508110:intron | 35.0% | |
| CGAAACGATCAATATAGTCT+GGG | - | chr3_4:55834575-55834594 | None:intergenic | 35.0% | |
| CCAGACTATATTGATCGTTT+CGG | + | chr3_4:55834573-55834592 | Msa0508110:CDS | 35.0% | |
| !! | GTAAGTCAATTTTAACGCTC+TGG | + | chr3_4:55834621-55834640 | Msa0508110:intron | 35.0% |
| GGATATGTTTATGTGCACAT+TGG | + | chr3_4:55834879-55834898 | Msa0508110:intron | 35.0% | |
| TAAACGAAGGCAAGTTAACT+TGG | - | chr3_4:55834908-55834927 | None:intergenic | 35.0% | |
| ACTACTATTACTGTGATGGT+GGG | - | chr3_4:55835023-55835042 | None:intergenic | 35.0% | |
| TACTACTATTACTGTGATGG+TGG | - | chr3_4:55835024-55835043 | None:intergenic | 35.0% | |
| CGCAAAGAATTTCATGTACA+CGG | - | chr3_4:55835215-55835234 | None:intergenic | 35.0% | |
| ATGTATCTTATGGCTGTATG+TGG | + | chr3_4:55835474-55835493 | Msa0508110:intron | 35.0% | |
| !!! | AGTTTTGGAACAAGAACACT+TGG | + | chr3_4:55835703-55835722 | Msa0508110:CDS | 35.0% |
| !!! | GTTTTGGAACAAGAACACTT+GGG | + | chr3_4:55835704-55835723 | Msa0508110:CDS | 35.0% |
| !!! | AGATCAAGGAGGTTTTGATT+TGG | + | chr3_4:55835805-55835824 | Msa0508110:CDS | 35.0% |
| !! | TTTGGAATACGATTTTGCAG+AGG | + | chr3_4:55835823-55835842 | Msa0508110:CDS | 35.0% |
| GCTGTTGACCAAAATAATGA+AGG | + | chr3_4:55835998-55836017 | Msa0508110:CDS | 35.0% | |
| GTTGACCAAAATAATGAAGG+CGG | + | chr3_4:55836001-55836020 | Msa0508110:CDS | 35.0% | |
| ! | CCACATCAACACCAATATTT+TGG | - | chr3_4:55836081-55836100 | None:intergenic | 35.0% |
| !! | CCAAAATATTGGTGTTGATG+TGG | + | chr3_4:55836078-55836097 | Msa0508110:CDS | 35.0% |
| ACAATGACAGTATTGTTGTG+GGG | + | chr3_4:55836119-55836138 | Msa0508110:CDS | 35.0% | |
| AATGATATTGCTGGTGAAGA+TGG | + | chr3_4:55836151-55836170 | Msa0508110:CDS | 35.0% | |
| ! | GTATTATTTTCACTAGCCAC+AGG | - | chr3_4:55836196-55836215 | None:intergenic | 35.0% |
| GATTCTACTTGAGACTTACT+AGG | + | chr3_4:55836277-55836296 | Msa0508110:exon | 35.0% | |
| TACTTGAGACTTACTAGGAA+CGG | + | chr3_4:55836282-55836301 | Msa0508110:exon | 35.0% | |
| ! | AATCGACTTCTACAAGTGTT+TGG | - | chr3_4:55836389-55836408 | None:intergenic | 35.0% |
| GAATAAAACAGACACAGTTC+AGG | - | chr3_4:55836445-55836464 | None:intergenic | 35.0% | |
| ATTTACAACATTCAACTGCC+AGG | - | chr3_4:55836518-55836537 | None:intergenic | 35.0% | |
| TTGATTCAAATTCCACTGTG+CGG | + | chr3_4:55836562-55836581 | Msa0508110:three_prime_UTR | 35.0% | |
| TCTCTTAAAACCCAACTCCA+AGG | + | chr3_4:55833082-55833101 | Msa0508110:intron | 40.0% | |
| AAGTATCCTGTGATCTTCCT+TGG | - | chr3_4:55833102-55833121 | None:intergenic | 40.0% | |
| !! | TTGTTTCAAGTTCGGACTGA+TGG | + | chr3_4:55833277-55833296 | Msa0508110:CDS | 40.0% |
| TCCTTTACTTAGGGTCTGTT+TGG | + | chr3_4:55833406-55833425 | Msa0508110:intron | 40.0% | |
| ACCAAACAGACCCTAAGTAA+AGG | - | chr3_4:55833410-55833429 | None:intergenic | 40.0% | |
| GGTAACAACTGATGAAGAAC+TGG | - | chr3_4:55833897-55833916 | None:intergenic | 40.0% | |
| TCTTCATCAGTTGTTACCTC+AGG | + | chr3_4:55833899-55833918 | Msa0508110:CDS | 40.0% | |
| ATCAGTTGTTACCTCAGGTT+AGG | + | chr3_4:55833904-55833923 | Msa0508110:intron | 40.0% | |
| TGTGAAAGAACTGGGATGAT+CGG | - | chr3_4:55833935-55833954 | None:intergenic | 40.0% | |
| !! | TAATGGGTTTGTGAATGGCT+TGG | + | chr3_4:55834369-55834388 | Msa0508110:intron | 40.0% |
| !! | AGATGACGTAGCTTTGGTTA+CGG | + | chr3_4:55834497-55834516 | Msa0508110:CDS | 40.0% |
| TATATATTCCTGGCAACTGC+TGG | - | chr3_4:55834536-55834555 | None:intergenic | 40.0% | |
| AGCAGTTGCCAGGAATATAT+AGG | + | chr3_4:55834535-55834554 | Msa0508110:CDS | 40.0% | |
| AGTTGCCAGGAATATATAGG+AGG | + | chr3_4:55834538-55834557 | Msa0508110:CDS | 40.0% | |
| CTGATCCTCCTATATATTCC+TGG | - | chr3_4:55834546-55834565 | None:intergenic | 40.0% | |
| CCGAAACGATCAATATAGTC+TGG | - | chr3_4:55834576-55834595 | None:intergenic | 40.0% | |
| GCTAAACAGAAATGTGCTTC+TGG | - | chr3_4:55834729-55834748 | None:intergenic | 40.0% | |
| ! | TGTTTAGCCCCTCGTATTTT+TGG | + | chr3_4:55834741-55834760 | Msa0508110:intron | 40.0% |
| ACCTTCAGCCAAAAATACGA+GGG | - | chr3_4:55834752-55834771 | None:intergenic | 40.0% | |
| AACCTTCAGCCAAAAATACG+AGG | - | chr3_4:55834753-55834772 | None:intergenic | 40.0% | |
| ! | GAAGTAGTAGCTTTTCAGCT+AGG | - | chr3_4:55835096-55835115 | None:intergenic | 40.0% |
| TATGCATCTATCACAAGCAG+AGG | - | chr3_4:55835187-55835206 | None:intergenic | 40.0% | |
| ATATGTGTGAGTTAGTGGTG+TGG | + | chr3_4:55835368-55835387 | Msa0508110:intron | 40.0% | |
| ACTCAAAACCTTCCAAGCTT+TGG | - | chr3_4:55835397-55835416 | None:intergenic | 40.0% | |
| GTTGGTTAATAATGAAGGGG+AGG | + | chr3_4:55835856-55835875 | Msa0508110:CDS | 40.0% | |
| ! | TGAAGGGATTCACTTTGAAG+AGG | + | chr3_4:55835886-55835905 | Msa0508110:CDS | 40.0% |
| ! | GAAGGGATTCACTTTGAAGA+GGG | + | chr3_4:55835887-55835906 | Msa0508110:CDS | 40.0% |
| ! | GATTCACTTTGAAGAGGGAT+TGG | + | chr3_4:55835892-55835911 | Msa0508110:CDS | 40.0% |
| GCTGACAACCAAAATAACGA+AGG | + | chr3_4:55836034-55836053 | Msa0508110:CDS | 40.0% | |
| GACAACCAAAATAACGAAGG+TGG | + | chr3_4:55836037-55836056 | Msa0508110:CDS | 40.0% | |
| AACCAAAATAACGAAGGTGG+TGG | + | chr3_4:55836040-55836059 | Msa0508110:CDS | 40.0% | |
| CTGTGATCTTCCTTGGAGTT+GGG | - | chr3_4:55833095-55833114 | None:intergenic | 45.0% | |
| TTAAAGCAAAAGGCCTGAGC+AGG | + | chr3_4:55833120-55833139 | Msa0508110:intron | 45.0% | |
| GTAGCTGCACATGCAATGAA+AGG | - | chr3_4:55833241-55833260 | None:intergenic | 45.0% | |
| TGCAGCTACTCTTGTGGAAT+TGG | + | chr3_4:55833252-55833271 | Msa0508110:intron | 45.0% | |
| CATGATACCCTTGCATGCAT+GGG | + | chr3_4:55833490-55833509 | Msa0508110:intron | 45.0% | |
| AGTGTGTCGCATTGTTTCGT+AGG | + | chr3_4:55833534-55833553 | Msa0508110:intron | 45.0% | |
| CGCATTGTTTCGTAGGTTTG+TGG | + | chr3_4:55833541-55833560 | Msa0508110:intron | 45.0% | |
| ! | AGGTTGGATGATGATGAAGG+TGG | - | chr3_4:55833862-55833881 | None:intergenic | 45.0% |
| ! | TGGAGGTTGGATGATGATGA+AGG | - | chr3_4:55833865-55833884 | None:intergenic | 45.0% |
| CATCATCATCCAACCTCCAT+TGG | + | chr3_4:55833866-55833885 | Msa0508110:CDS | 45.0% | |
| TGAAGAACTGGGATGACCAA+TGG | - | chr3_4:55833885-55833904 | None:intergenic | 45.0% | |
| ! | TGAATGGCTTGGCTGAATCA+AGG | + | chr3_4:55834380-55834399 | Msa0508110:intron | 45.0% |
| !! | TTGTCGTTCTAGGACGGATA+TGG | + | chr3_4:55834455-55834474 | Msa0508110:intron | 45.0% |
| TATGGCTCATGATTGGACCT+TGG | + | chr3_4:55834473-55834492 | Msa0508110:CDS | 45.0% | |
| CAAAGCTACGTCATCTTCCA+AGG | - | chr3_4:55834493-55834512 | None:intergenic | 45.0% | |
| CTTGGAAGATGACGTAGCTT+TGG | + | chr3_4:55834491-55834510 | Msa0508110:CDS | 45.0% | |
| GAAGAGCAGACTCGGATAAT+TGG | - | chr3_4:55834599-55834618 | None:intergenic | 45.0% | |
| ACTTACTCGAAGAGCAGACT+CGG | - | chr3_4:55834607-55834626 | None:intergenic | 45.0% | |
| CCTTCAGCCAAAAATACGAG+GGG | - | chr3_4:55834751-55834770 | None:intergenic | 45.0% | |
| GGCTTGACAGTGTTCATCTA+AGG | + | chr3_4:55834984-55835003 | Msa0508110:intron | 45.0% | |
| TACTCCAAGCTTTCTCTAGC+AGG | + | chr3_4:55835656-55835675 | Msa0508110:CDS | 45.0% | |
| GAACAAGAACACTTGGGAGA+GGG | + | chr3_4:55835710-55835729 | Msa0508110:CDS | 45.0% | |
| ! | GGCCACTTTGGAAATGAACA+GGG | + | chr3_4:55835782-55835801 | Msa0508110:CDS | 45.0% |
| CTCCCTGTTCATTTCCAAAG+TGG | - | chr3_4:55835787-55835806 | None:intergenic | 45.0% | |
| GGAAATGAACAGGGAGATCA+AGG | + | chr3_4:55835791-55835810 | Msa0508110:CDS | 45.0% | |
| AATGAACAGGGAGATCAAGG+AGG | + | chr3_4:55835794-55835813 | Msa0508110:CDS | 45.0% | |
| ! | AAGGGGAGGATGTTGATGAA+GGG | + | chr3_4:55835870-55835889 | Msa0508110:CDS | 45.0% |
| AGGGATTGGACGTTGTTGAA+GGG | + | chr3_4:55835906-55835925 | Msa0508110:CDS | 45.0% | |
| TCATCTAACTCTCCTGCATC+AGG | - | chr3_4:55835935-55835954 | None:intergenic | 45.0% | |
| TTGGGTCGATGTGTACAATG+TGG | + | chr3_4:55835961-55835980 | Msa0508110:CDS | 45.0% | |
| GACCAAAATAATGAAGGCGG+TGG | + | chr3_4:55836004-55836023 | Msa0508110:CDS | 45.0% | |
| ! | CACCACCGCCTTCATTATTT+TGG | - | chr3_4:55836009-55836028 | None:intergenic | 45.0% |
| ! | CACCACCACCTTCGTTATTT+TGG | - | chr3_4:55836045-55836064 | None:intergenic | 45.0% |
| ! | AAATAACGAAGGTGGTGGTG+TGG | + | chr3_4:55836045-55836064 | Msa0508110:CDS | 45.0% |
| CACAGGATTGTTACCTTCCA+CGG | - | chr3_4:55836179-55836198 | None:intergenic | 45.0% | |
| ! | TTCGCGTCTTTGTTGTCTAC+TGG | + | chr3_4:55836462-55836481 | Msa0508110:three_prime_UTR | 45.0% |
| CCTGTGATCTTCCTTGGAGT+TGG | - | chr3_4:55833096-55833115 | None:intergenic | 50.0% | |
| CCAACTCCAAGGAAGATCAC+AGG | + | chr3_4:55833093-55833112 | Msa0508110:intron | 50.0% | |
| TGCATGTGCAGCTACTCTTG+TGG | + | chr3_4:55833246-55833265 | Msa0508110:intron | 50.0% | |
| GCATGATACCCTTGCATGCA+TGG | + | chr3_4:55833489-55833508 | Msa0508110:intron | 50.0% | |
| ! | TTGGTGACCCATGCATGCAA+GGG | - | chr3_4:55833500-55833519 | None:intergenic | 50.0% |
| ! | TTTGGTGACCCATGCATGCA+AGG | - | chr3_4:55833501-55833520 | None:intergenic | 50.0% |
| AGAACTGGGATGACCAATGG+AGG | - | chr3_4:55833882-55833901 | None:intergenic | 50.0% | |
| GATCGGTAAAGCCTAACCTG+AGG | - | chr3_4:55833918-55833937 | None:intergenic | 50.0% | |
| GGACGGATATGGCTCATGAT+TGG | + | chr3_4:55834466-55834485 | Msa0508110:intron | 50.0% | |
| GTATAGGGAAGGAGTTTGCG+GGG | - | chr3_4:55834650-55834669 | None:intergenic | 50.0% | |
| GGTATAGGGAAGGAGTTTGC+GGG | - | chr3_4:55834651-55834670 | None:intergenic | 50.0% | |
| GGGTATAGGGAAGGAGTTTG+CGG | - | chr3_4:55834652-55834671 | None:intergenic | 50.0% | |
| !!! | CCCCTCGTATTTTTGGCTGA+AGG | + | chr3_4:55834748-55834767 | Msa0508110:intron | 50.0% |
| TGTGGTAGCCAAAGCTTGGA+AGG | + | chr3_4:55835386-55835405 | Msa0508110:intron | 50.0% | |
| GGACGCGTACCACAAATTCT+AGG | + | chr3_4:55835677-55835696 | Msa0508110:CDS | 50.0% | |
| GGAACAAGAACACTTGGGAG+AGG | + | chr3_4:55835709-55835728 | Msa0508110:CDS | 50.0% | |
| GAACACTTGGGAGAGGGAAA+CGG | + | chr3_4:55835716-55835735 | Msa0508110:CDS | 50.0% | |
| ! | GGGCCACTTTGGAAATGAAC+AGG | + | chr3_4:55835781-55835800 | Msa0508110:CDS | 50.0% |
| ! | GAAGGGGAGGATGTTGATGA+AGG | + | chr3_4:55835869-55835888 | Msa0508110:CDS | 50.0% |
| GAGGGATTGGACGTTGTTGA+AGG | + | chr3_4:55835905-55835924 | Msa0508110:CDS | 50.0% | |
| CGTGGAAGGTAACAATCCTG+TGG | + | chr3_4:55836177-55836196 | Msa0508110:CDS | 50.0% | |
| TACTGTTGCTGAAGCTGCTG+TGG | + | chr3_4:55836213-55836232 | Msa0508110:CDS | 50.0% | |
| ACTGTTGCTGAAGCTGCTGT+GGG | + | chr3_4:55836214-55836233 | Msa0508110:CDS | 50.0% | |
| GGACCAGTGGGAACTATTTC+TGG | + | chr3_4:55836235-55836254 | Msa0508110:CDS | 50.0% | |
| GGTCCAGAAATAGTTCCCAC+TGG | - | chr3_4:55836241-55836260 | None:intergenic | 50.0% | |
| !! | GTGGGAACTATTTCTGGACC+TGG | + | chr3_4:55836241-55836260 | Msa0508110:CDS | 50.0% |
| CTGGGATGACCAATGGAGGT+TGG | - | chr3_4:55833878-55833897 | None:intergenic | 55.0% | |
| GTGGTGTGGTAGCCAAAGCT+TGG | + | chr3_4:55835382-55835401 | Msa0508110:intron | 55.0% | |
| GCGTCCTGCTAGAGAAAGCT+TGG | - | chr3_4:55835663-55835682 | None:intergenic | 55.0% | |
| TTGGGAGAGGGAAACGGAGA+GGG | + | chr3_4:55835722-55835741 | Msa0508110:CDS | 55.0% | |
| TGCAGAGGACCCTGTTGTGT+TGG | + | chr3_4:55835838-55835857 | Msa0508110:CDS | 55.0% | |
| TGCTGGTGAAGATGGTTCCG+TGG | + | chr3_4:55836159-55836178 | Msa0508110:CDS | 55.0% | |
| GGTGAAGATGGTTCCGTGGA+AGG | + | chr3_4:55836163-55836182 | Msa0508110:CDS | 55.0% | |
| GAATCCTCATCAGCTGCTCC+AGG | - | chr3_4:55836262-55836281 | None:intergenic | 55.0% | |
| GCTCGATTCCAGCAGTTGCC+AGG | + | chr3_4:55834525-55834544 | Msa0508110:CDS | 60.0% | |
| CTTGGGAGAGGGAAACGGAG+AGG | + | chr3_4:55835721-55835740 | Msa0508110:CDS | 60.0% | |
| TGGGAGAGGGAAACGGAGAG+GGG | + | chr3_4:55835723-55835742 | Msa0508110:CDS | 60.0% | |
| AAACGGAGAGGGGCAGCAAG+AGG | + | chr3_4:55835733-55835752 | Msa0508110:CDS | 60.0% | |
| AACGGAGAGGGGCAGCAAGA+GGG | + | chr3_4:55835734-55835753 | Msa0508110:CDS | 60.0% | |
| GGGCAGCAAGAGGGTCACTT+GGG | + | chr3_4:55835743-55835762 | Msa0508110:CDS | 60.0% | |
| GGCAGCAAGAGGGTCACTTG+GGG | + | chr3_4:55835744-55835763 | Msa0508110:CDS | 60.0% | |
| CAAGAGGGTCACTTGGGGCA+TGG | + | chr3_4:55835749-55835768 | Msa0508110:CDS | 60.0% | |
| GGTCACTTGGGGCATGGTCA+GGG | + | chr3_4:55835755-55835774 | Msa0508110:CDS | 60.0% | |
| TTGGGGCATGGTCAGGGAGA+GGG | + | chr3_4:55835761-55835780 | Msa0508110:CDS | 60.0% | |
| GTTGAAGGGCTGCCTGATGC+AGG | + | chr3_4:55835920-55835939 | Msa0508110:CDS | 60.0% | |
| TGAAGCTGCTGTGGGACCAG+TGG | + | chr3_4:55836222-55836241 | Msa0508110:CDS | 60.0% | |
| GAAGCTGCTGTGGGACCAGT+GGG | + | chr3_4:55836223-55836242 | Msa0508110:CDS | 60.0% | |
| TGGACCTGGAGCAGCTGATG+AGG | + | chr3_4:55836255-55836274 | Msa0508110:CDS | 60.0% | |
| GGGGCAGCAAGAGGGTCACT+TGG | + | chr3_4:55835742-55835761 | Msa0508110:CDS | 65.0% | |
| GGGTCACTTGGGGCATGGTC+AGG | + | chr3_4:55835754-55835773 | Msa0508110:CDS | 65.0% | |
| CTTGGGGCATGGTCAGGGAG+AGG | + | chr3_4:55835760-55835779 | Msa0508110:CDS | 65.0% | |
| GGTCAGGGAGAGGGCCACTT+TGG | + | chr3_4:55835770-55835789 | Msa0508110:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 55832842 | 55836587 | 55832842 | ID=Msa0508110;Name=Msa0508110 |
| chr3_4 | mRNA | 55832842 | 55836587 | 55832842 | ID=Msa0508110-mRNA-1;Parent=Msa0508110;Name=Msa0508110-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0.5|0.6|1|0.75|1|5|299|319 |
| chr3_4 | exon | 55832842 | 55832845 | 55832842 | ID=Msa0508110-mRNA-1:exon:12516;Parent=Msa0508110-mRNA-1 |
| chr3_4 | exon | 55833257 | 55833325 | 55833257 | ID=Msa0508110-mRNA-1:exon:12517;Parent=Msa0508110-mRNA-1 |
| chr3_4 | exon | 55833827 | 55833920 | 55833827 | ID=Msa0508110-mRNA-1:exon:12518;Parent=Msa0508110-mRNA-1 |
| chr3_4 | exon | 55834467 | 55834620 | 55834467 | ID=Msa0508110-mRNA-1:exon:12519;Parent=Msa0508110-mRNA-1 |
| chr3_4 | exon | 55835650 | 55836587 | 55835650 | ID=Msa0508110-mRNA-1:exon:12520;Parent=Msa0508110-mRNA-1 |
| chr3_4 | CDS | 55832842 | 55832845 | 55832842 | ID=Msa0508110-mRNA-1:cds;Parent=Msa0508110-mRNA-1 |
| chr3_4 | CDS | 55833257 | 55833325 | 55833257 | ID=Msa0508110-mRNA-1:cds;Parent=Msa0508110-mRNA-1 |
| chr3_4 | CDS | 55833827 | 55833920 | 55833827 | ID=Msa0508110-mRNA-1:cds;Parent=Msa0508110-mRNA-1 |
| chr3_4 | CDS | 55834467 | 55834620 | 55834467 | ID=Msa0508110-mRNA-1:cds;Parent=Msa0508110-mRNA-1 |
| chr3_4 | CDS | 55835650 | 55836288 | 55835650 | ID=Msa0508110-mRNA-1:cds;Parent=Msa0508110-mRNA-1 |
| chr3_4 | three_prime_UTR | 55836289 | 55836587 | 55836289 | ID=Msa0508110-mRNA-1:three_prime_utr;Parent=Msa0508110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
