AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1069120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1069120 MtrunA17_Chr4g0044131 82.657 271 39 2 27 297 1 263 3.20e-162 452
Msa1069120 MtrunA17_Chr7g0267001 74.908 271 42 3 27 297 1 245 1.09e-140 397
Msa1069120 MtrunA17_Chr7g0267011 96.891 193 5 1 27 219 1 192 4.30e-134 378
Msa1069120 MtrunA17_Chr7g0266981 53.962 265 122 0 24 288 2 266 6.10e-96 284
Msa1069120 MtrunA17_Chr4g0044111 53.962 265 122 0 24 288 2 266 7.19e-96 284
Msa1069120 MtrunA17_Chr4g0026001 55.859 256 110 1 33 288 12 264 2.68e-94 280
Msa1069120 MtrunA17_Chr4g0025971 55.469 256 111 1 33 288 12 264 1.90e-93 278
Msa1069120 MtrunA17_Chr7g0266891 54.724 254 115 0 35 288 7 260 4.80e-93 276
Msa1069120 MtrunA17_Chr7g0244061 50.923 271 113 3 33 284 27 296 1.94e-89 269
Msa1069120 MtrunA17_Chr4g0025981 52.756 254 117 1 36 289 42 292 1.14e-87 265
Msa1069120 MtrunA17_Chr7g0268591 47.232 271 136 3 27 291 25 294 1.30e-79 243
Msa1069120 MtrunA17_Chr7g0270441 48.031 254 131 1 33 285 4 257 1.18e-75 232
Msa1069120 MtrunA17_Chr7g0252031 44.840 281 145 5 20 291 18 297 9.14e-72 223
Msa1069120 MtrunA17_Chr6g0459261 42.231 251 143 2 34 282 24 274 1.45e-71 222
Msa1069120 MtrunA17_Chr2g0324021 45.560 259 139 2 33 290 4 261 1.05e-68 214
Msa1069120 MtrunA17_Chr3g0084871 45.247 263 137 3 33 288 14 276 2.20e-68 214
Msa1069120 MtrunA17_Chr7g0266991 48.291 234 104 2 29 262 19 235 1.22e-66 208
Msa1069120 MtrunA17_Chr4g0040371 43.233 266 138 5 33 288 17 279 2.92e-66 209
Msa1069120 MtrunA17_Chr6g0459281 42.460 252 143 2 32 281 10 261 3.38e-65 206
Msa1069120 MtrunA17_Chr6g0459331 42.629 251 142 2 34 282 12 262 7.28e-65 204
Msa1069120 MtrunA17_Chr7g0270451 44.622 251 137 2 33 282 4 253 9.53e-65 204
Msa1069120 MtrunA17_Chr6g0459301 40.239 251 148 2 34 282 13 263 2.26e-64 203
Msa1069120 MtrunA17_Chr6g0459351 41.600 250 144 2 34 281 12 261 9.03e-64 202
Msa1069120 MtrunA17_Chr6g0459271 40.239 251 148 2 34 282 12 262 1.97e-62 198
Msa1069120 MtrunA17_Chr4g0044121 48.555 173 89 0 116 288 1 173 6.87e-51 166
Msa1069120 MtrunA17_Chr6g0463951 41.520 171 98 2 116 285 1 170 3.64e-37 130
Msa1069120 MtrunA17_Chr7g0270471 46.154 143 76 1 144 285 3 145 6.64e-37 129
Msa1069120 MtrunA17_Chr3g0142651 45.528 123 60 1 116 238 1 116 3.10e-28 106
Msa1069120 MtrunA17_Chr7g0270461 54.167 96 44 0 27 122 38 133 1.05e-27 105
Msa1069120 MtrunA17_Chr3g0122901 29.020 255 164 8 33 280 73 317 3.97e-26 105
Msa1069120 MtrunA17_Chr7g0272961 29.457 258 163 8 34 280 39 288 6.71e-26 104
Msa1069120 MtrunA17_Chr7g0259521 29.924 264 166 5 27 281 1 254 1.74e-24 99.8
Msa1069120 MtrunA17_Chr8g0357481 32.342 269 157 9 35 288 14 272 4.56e-24 99.4
Msa1069120 MtrunA17_Chr4g0075531 28.958 259 167 7 31 283 3 250 9.04e-24 97.4
Msa1069120 MtrunA17_Chr1g0191751 30.233 258 161 7 34 280 100 349 1.64e-23 99.0
Msa1069120 MtrunA17_Chr4g0028921 30.827 266 173 7 35 292 11 273 1.75e-23 97.4
Msa1069120 MtrunA17_Chr7g0259531 28.185 259 176 4 35 287 11 265 7.44e-23 95.5
Msa1069120 MtrunA17_Chr4g0028911 30.075 266 175 7 35 292 11 273 1.41e-22 94.7
Msa1069120 MtrunA17_Chr3g0112151 27.547 265 182 6 28 287 77 336 5.30e-22 94.4
Msa1069120 MtrunA17_Chr3g0112271 29.528 254 161 9 35 280 17 260 8.16e-22 92.8
Msa1069120 MtrunA17_Chr3g0112141 28.287 251 172 5 35 282 17 262 1.13e-21 92.4
Msa1069120 MtrunA17_Chr4g0074511 31.225 253 153 10 34 273 39 283 1.84e-21 92.0
Msa1069120 MtrunA17_Chr1g0182511 30.483 269 146 11 35 281 14 263 1.92e-21 91.7
Msa1069120 MtrunA17_Chr3g0112171 27.381 252 173 7 35 282 15 260 7.59e-21 90.1
Msa1069120 MtrunA17_Chr7g0239481 28.458 253 171 6 35 281 15 263 1.06e-20 89.4
Msa1069120 MtrunA17_Chr3g0112261 28.016 257 173 8 32 282 14 264 3.62e-20 88.2
Msa1069120 MtrunA17_Chr0c30g0494101 30.159 252 155 9 34 273 39 281 4.49e-19 85.5
Msa1069120 MtrunA17_Chr1g0171831 28.175 252 163 8 33 270 12 259 7.50e-19 84.3
Msa1069120 MtrunA17_Chr4g0032141 27.027 259 179 7 35 289 56 308 3.05e-18 83.6
Msa1069120 MtrunA17_Chr7g0239501 27.273 253 176 6 35 282 16 265 3.86e-18 82.4
Msa1069120 MtrunA17_Chr7g0239451 26.119 268 184 7 25 283 4 266 1.32e-17 80.9
Msa1069120 MtrunA17_Chr7g0239511 25.984 254 178 6 35 282 16 265 1.56e-17 80.9
Msa1069120 MtrunA17_Chr4g0054341 27.451 204 137 4 36 238 3 196 9.64e-17 78.6
Msa1069120 MtrunA17_Chr7g0239491 25.984 254 179 6 35 283 15 264 2.74e-16 77.0
Msa1069120 MtrunA17_Chr8g0386201 27.957 186 128 4 37 219 47 229 1.30e-15 76.3
Msa1069120 MtrunA17_Chr7g0249571 30.928 194 125 4 35 221 38 229 1.77e-15 75.5
Msa1069120 MtrunA17_Chr4g0032181 25.888 197 132 5 91 282 59 246 1.30e-14 72.4
Msa1069120 MtrunA17_Chr8g0386171 26.786 224 122 5 35 221 52 270 2.04e-14 72.8
Msa1069120 MtrunA17_Chr8g0355281 26.471 204 141 3 41 235 75 278 2.51e-13 69.7
Msa1069120 MtrunA17_Chr3g0124471 29.189 185 121 5 38 219 29 206 3.08e-13 68.9
Msa1069120 MtrunA17_Chr6g0485711 25.229 218 137 5 41 235 184 398 1.07e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1069120 AT3G51680.1 50.187 267 117 4 33 283 30 296 1.09e-77 239
Msa1069120 AT4G03140.1 47.656 256 128 2 33 283 76 330 1.20e-72 228
Msa1069120 AT3G29250.2 46.538 260 135 4 32 289 3 260 1.50e-72 224
Msa1069120 AT1G52340.1 45.725 269 130 3 33 288 16 281 2.51e-72 225
Msa1069120 AT3G29250.3 46.538 260 135 4 32 289 39 296 7.34e-72 224
Msa1069120 AT2G47140.1 44.444 252 138 2 32 282 3 253 4.24e-71 221
Msa1069120 AT3G26770.1 45.312 256 133 3 33 282 39 293 4.47e-71 222
Msa1069120 AT2G47130.1 46.245 253 131 4 32 282 3 252 9.36e-71 220
Msa1069120 AT3G29250.1 46.304 257 134 4 35 289 44 298 2.19e-70 220
Msa1069120 AT2G47120.1 42.802 257 143 4 32 287 3 256 1.66e-68 214
Msa1069120 AT2G47120.2 42.745 255 142 4 34 287 6 257 4.27e-68 213
Msa1069120 AT3G29260.1 43.023 258 142 4 32 287 3 257 8.44e-68 212
Msa1069120 AT3G26760.1 42.537 268 145 3 23 282 24 290 1.84e-66 210
Msa1069120 AT3G42960.1 42.537 268 138 8 33 288 6 269 2.59e-55 181
Msa1069120 AT5G18210.1 33.333 261 151 8 35 281 8 259 5.90e-26 103
Msa1069120 AT3G03980.1 31.538 260 161 4 35 281 14 269 1.32e-25 103
Msa1069120 AT3G05260.1 29.066 289 185 8 3 280 5 284 3.88e-25 102
Msa1069120 AT1G54870.1 30.579 242 154 5 1 232 48 285 4.23e-25 103
Msa1069120 AT1G54870.2 30.579 242 154 5 1 232 50 287 4.72e-25 103
Msa1069120 AT2G47150.1 29.435 248 120 6 35 281 1 194 2.41e-24 98.2
Msa1069120 AT3G04000.1 27.757 263 166 6 35 280 14 269 2.45e-23 97.1
Msa1069120 AT5G18210.2 33.878 245 139 8 35 265 8 243 2.09e-22 94.7
Msa1069120 AT5G06060.1 27.519 258 177 6 35 288 9 260 1.20e-21 92.4
Msa1069120 AT1G63380.4 27.985 268 179 7 35 292 19 282 1.38e-21 92.8
Msa1069120 AT1G63380.1 27.985 268 179 7 35 292 17 280 1.46e-21 92.4
Msa1069120 AT1G63380.2 27.985 268 179 7 35 292 22 285 1.57e-21 92.4
Msa1069120 AT1G63380.3 27.985 268 179 7 35 292 15 278 1.88e-21 92.0
Msa1069120 AT3G12800.1 31.939 263 151 10 35 280 10 261 1.88e-21 92.4
Msa1069120 AT2G17845.1 27.372 274 175 9 35 292 47 312 3.61e-21 92.0
Msa1069120 AT2G29340.2 27.099 262 173 7 35 288 7 258 7.96e-21 90.1
Msa1069120 AT1G62610.1 27.715 267 181 7 35 292 14 277 1.20e-20 90.1
Msa1069120 AT1G62610.4 27.715 267 181 7 35 292 19 282 1.24e-20 90.1
Msa1069120 AT1G62610.2 27.715 267 181 7 35 292 13 276 1.24e-20 89.7
Msa1069120 AT1G62610.3 27.715 267 181 7 35 292 15 278 1.36e-20 89.7
Msa1069120 AT2G29340.1 27.099 262 173 7 35 288 7 258 1.45e-20 90.1
Msa1069120 AT1G07440.1 27.519 258 176 6 35 288 12 262 1.04e-19 87.0
Msa1069120 AT2G29310.1 26.316 266 170 6 35 288 7 258 1.29e-19 86.7
Msa1069120 AT3G55310.1 27.820 266 181 6 35 292 17 279 1.39e-19 87.0
Msa1069120 AT4G05530.1 28.517 263 171 7 27 283 1 252 2.67e-19 85.9
Msa1069120 AT2G29330.1 26.070 257 182 5 35 288 7 258 2.78e-19 85.9
Msa1069120 AT4G13180.1 29.134 254 168 6 35 281 13 261 3.83e-19 85.5
Msa1069120 AT3G55290.2 26.937 271 177 8 35 292 17 279 1.31e-18 84.3
Msa1069120 AT3G55290.1 26.937 271 177 8 35 292 18 280 1.51e-18 84.3
Msa1069120 AT2G30670.1 27.203 261 174 6 35 288 7 258 2.02e-18 83.6
Msa1069120 AT5G50700.1 28.643 199 134 5 25 219 35 229 2.49e-18 84.7
Msa1069120 AT5G50600.1 28.643 199 134 5 25 219 35 229 2.49e-18 84.7
Msa1069120 AT2G29340.3 29.146 199 134 5 35 229 7 202 6.51e-18 80.9
Msa1069120 AT2G29340.4 29.146 199 134 5 35 229 7 202 6.51e-18 80.9
Msa1069120 AT3G46170.1 28.195 266 180 6 35 292 26 288 1.09e-17 82.0
Msa1069120 AT1G24360.1 25.197 254 175 7 33 280 72 316 4.44e-17 80.5
Msa1069120 AT5G50590.2 31.053 190 125 5 33 219 43 229 1.14e-16 78.6
Msa1069120 AT5G50690.2 31.053 190 125 5 33 219 43 229 1.14e-16 78.6
Msa1069120 AT2G29360.1 26.070 257 182 6 35 288 16 267 1.43e-16 78.6
Msa1069120 AT5G50590.1 31.053 190 125 5 33 219 43 229 1.90e-16 78.6
Msa1069120 AT5G50690.1 31.053 190 125 5 33 219 43 229 1.90e-16 78.6
Msa1069120 AT2G29320.1 25.954 262 177 6 35 288 13 265 2.68e-16 77.8
Msa1069120 AT2G29310.3 28.646 192 132 3 35 223 7 196 7.42e-16 75.1
Msa1069120 AT2G29290.2 26.538 260 177 6 35 288 7 258 9.38e-16 75.9
Msa1069120 AT3G03330.1 30.412 194 127 4 35 221 41 233 1.07e-15 76.6
Msa1069120 AT3G47350.1 28.311 219 138 7 37 249 46 251 2.06e-15 75.9
Msa1069120 AT1G07450.1 27.132 258 177 7 35 288 8 258 2.21e-15 75.1
Msa1069120 AT3G47350.2 28.311 219 138 7 37 249 46 251 2.23e-15 75.9
Msa1069120 AT2G29260.1 26.482 253 174 6 35 282 68 313 2.38e-15 75.9
Msa1069120 AT2G29150.1 27.132 258 177 7 35 288 16 266 2.47e-15 75.1
Msa1069120 AT1G49670.2 31.818 198 121 5 37 221 6 202 2.69e-15 76.6
Msa1069120 AT1G49670.1 31.818 198 121 5 37 221 6 202 2.95e-15 76.6
Msa1069120 AT2G29370.1 27.519 258 177 8 35 288 16 267 3.45e-15 74.7
Msa1069120 AT1G10310.1 30.000 190 130 3 38 226 18 205 5.79e-15 73.6
Msa1069120 AT2G29300.1 24.514 257 185 6 35 287 7 258 7.64e-15 73.6
Msa1069120 AT5G10050.1 28.718 195 131 4 36 228 6 194 7.85e-15 73.6
Msa1069120 AT2G29300.2 24.800 250 179 6 35 280 7 251 1.59e-14 72.8
Msa1069120 AT2G29350.1 26.070 257 181 4 35 288 15 265 2.47e-14 72.0
Msa1069120 AT5G65205.1 30.108 186 122 4 36 219 7 186 2.87e-13 69.3
Msa1069120 AT2G29310.2 25.726 241 151 8 61 288 31 256 1.60e-12 66.6
Msa1069120 AT5G04900.1 29.016 193 127 4 41 224 83 274 2.42e-12 67.0
Msa1069120 AT3G47360.1 28.351 194 127 6 38 225 48 235 4.31e-12 66.2
Msa1069120 AT2G29320.3 28.272 191 131 4 35 221 13 201 4.58e-12 64.7
Msa1069120 AT4G10020.1 26.630 184 123 5 35 211 47 225 4.23e-11 63.5
Msa1069120 AT5G50770.1 27.041 196 131 4 30 219 40 229 6.72e-11 62.8

Find 60 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTGCATTTGTTATAAT+TGG 0.140669 7_2:-64654737 None:intergenic
GTATTTGACGTTAATGTTTA+TGG 0.157931 7_2:+64654494 Msa1069120:CDS
TCTTCCATGGCTTCAATTAT+TGG 0.161831 7_2:+64654066 Msa1069120:CDS
ATTGATCAGTAGTAAGAATT+TGG 0.166602 7_2:+64654983 Msa1069120:exon
GATACCGTAGTTTCGAATTA+TGG 0.217742 7_2:+64654383 Msa1069120:CDS
AAGAATTTGTGTGTAGAATT+AGG 0.223231 7_2:+64654665 Msa1069120:CDS
AAAATGCTTCATTGCACTTT+TGG 0.251580 7_2:-64655185 None:intergenic
TAATGTTTATGGAGCTTTCT+TGG 0.279073 7_2:+64654505 Msa1069120:CDS
TGTGTAGAATTAGGACAATA+TGG 0.323778 7_2:+64654674 Msa1069120:CDS
ATTAGTAGTTGGAACAGTTT+TGG 0.327434 7_2:+64653901 None:intergenic
TATCATAATTTAATATTTCT+CGG 0.333064 7_2:-64654454 None:intergenic
GAATGGAGTCAACTTTGTTT+TGG 0.335482 7_2:+64654883 Msa1069120:CDS
CTCTCTTTGTGCAGGCTTGA+AGG 0.373704 7_2:+64654161 Msa1069120:intron
AATGTTTATGGAGCTTTCTT+GGG 0.383944 7_2:+64654506 Msa1069120:CDS
ACAGGAGGTGCTAGTGGAAT+TGG 0.390234 7_2:+64654200 Msa1069120:CDS
CAATCCCTTTGCAATGAACT+TGG 0.395230 7_2:+64654296 Msa1069120:CDS
CTTATAAAATGTTTCATGAA+TGG 0.430525 7_2:+64654947 Msa1069120:CDS
ATGATAGCGAAGCTTTCAAA+AGG 0.448243 7_2:+64654471 Msa1069120:CDS
TGGCTTCAATTATTGGCAAA+AGG 0.456299 7_2:+64654073 Msa1069120:CDS
GACATCATGTTTAACAATGC+TGG 0.458821 7_2:+64654413 Msa1069120:CDS
GAATATGAACAAGAGTGAAA+TGG 0.462229 7_2:+64654757 Msa1069120:CDS
TCTTCCAAGTTCATTGCAAA+GGG 0.463133 7_2:-64654300 None:intergenic
CAGTAGTAAGAATTTGGATT+CGG 0.464256 7_2:+64654989 Msa1069120:exon
TTCTTCCAAGTTCATTGCAA+AGG 0.472083 7_2:-64654301 None:intergenic
AACTGCACTGAACTATTATG+AGG 0.483911 7_2:+64655021 Msa1069120:three_prime_UTR
GATGCTTCAAAGTTTGTGAA+TGG 0.492301 7_2:+64654866 Msa1069120:CDS
TGCAGAAGTGAATGACATAT+TGG 0.498711 7_2:-64654924 None:intergenic
TGGGTGCTAAGCATGCTGCT+AGG 0.498748 7_2:+64654525 Msa1069120:CDS
GTGTAGAATTAGGACAATAT+GGG 0.500905 7_2:+64654675 Msa1069120:CDS
CATTCAAACTCTAGTGGAGT+TGG 0.515595 7_2:+64654032 Msa1069120:CDS
GGGTGCTAAGCATGCTGCTA+GGG 0.521675 7_2:+64654526 Msa1069120:CDS
GCATTTGTTATAATTGGAGT+AGG 0.524658 7_2:-64654731 None:intergenic
AGAGGCTATTCTTGAAGTTG+AGG 0.532968 7_2:+64654811 Msa1069120:CDS
CTACTGATCAATGTGGTTGG+TGG 0.535042 7_2:-64654972 None:intergenic
TTTGCCAATAATTGAAGCCA+TGG 0.539515 7_2:-64654070 None:intergenic
TTCTTCAAAGCATGCATCAG+TGG 0.545758 7_2:+64654634 Msa1069120:CDS
GGTAAAGTAGCAATAATCAC+AGG 0.547973 7_2:+64654182 Msa1069120:CDS
TCTTCAAAGCATGCATCAGT+GGG 0.552690 7_2:+64654635 Msa1069120:CDS
TATATATTCATTAATAGTTG+CGG 0.552856 7_2:-64653972 None:intergenic
GGTGGGAAAATCATCTTCCA+TGG 0.553485 7_2:+64654053 Msa1069120:CDS
TCAAACTCTAGTGGAGTTGG+TGG 0.554157 7_2:+64654035 Msa1069120:CDS
ATAATCACAGGAGGTGCTAG+TGG 0.563533 7_2:+64654194 Msa1069120:CDS
GCAGATATTCAAGATGAAGT+AGG 0.564586 7_2:+64654272 Msa1069120:CDS
TTACTACTGATCAATGTGGT+TGG 0.572391 7_2:-64654975 None:intergenic
CTCAGTTGGTGTGTTGAAAG+AGG 0.576270 7_2:+64654793 Msa1069120:CDS
CACACTAGTTACAAATCAGA+GGG 0.590387 7_2:-64655219 None:intergenic
TGATAGCGAAGCTTTCAAAA+GGG 0.590961 7_2:+64654472 Msa1069120:CDS
CTTACCATAATTCGAAACTA+CGG 0.593414 7_2:-64654387 None:intergenic
ATAGTTCAGTGCAGTTGTTG+AGG 0.609897 7_2:-64655014 None:intergenic
ATTGGAGTAGGAATAGCTCC+TGG 0.611949 7_2:-64654719 None:intergenic
AAAGTGAATTGTATCTCACC+AGG 0.618157 7_2:+64654701 Msa1069120:CDS
TCACACTAGTTACAAATCAG+AGG 0.623026 7_2:-64655220 None:intergenic
CTCTTTCAACACACCAACTG+AGG 0.623548 7_2:-64654792 None:intergenic
TGAAGTTGAGGATATAGCTG+AGG 0.641258 7_2:+64654823 Msa1069120:CDS
GCTAAACTATTTGTTCAACA+TGG 0.643126 7_2:+64654233 Msa1069120:CDS
AGTGTTGCTACAGAAACTGC+TGG 0.652960 7_2:+64654590 Msa1069120:CDS
AGAAGTGAATGACATATTGG+TGG 0.654410 7_2:-64654921 None:intergenic
CAAACTCTAGTGGAGTTGGT+GGG 0.658364 7_2:+64654036 Msa1069120:CDS
AAAGTAGCAATAATCACAGG+AGG 0.676889 7_2:+64654185 Msa1069120:CDS
ATTCTTACTACTGATCAATG+TGG 0.704791 7_2:-64654979 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCATAATTTAATATTTCT+CGG - chr7_2:64654457-64654476 None:intergenic 10.0%
!! TATCATAATTTAATATTTCT+CGG - chr7_2:64654457-64654476 None:intergenic 10.0%
!! TATATATTCATTAATAGTTG+CGG - chr7_2:64653975-64653994 None:intergenic 15.0%
!!! ATTTGACTTAATAGTATTTT+TGG + chr7_2:64655091-64655110 Msa1069120:three_prime_UTR 15.0%
!!! AAGAAGTTCAATTTTAAAAA+TGG + chr7_2:64655131-64655150 Msa1069120:three_prime_UTR 15.0%
!!! AATAAGAATCTATGAATTTT+AGG + chr7_2:64655271-64655290 Msa1069120:three_prime_UTR 15.0%
!! TATATATTCATTAATAGTTG+CGG - chr7_2:64653975-64653994 None:intergenic 15.0%
!!! ATTTGACTTAATAGTATTTT+TGG + chr7_2:64655091-64655110 Msa1069120:three_prime_UTR 15.0%
!!! AAGAAGTTCAATTTTAAAAA+TGG + chr7_2:64655131-64655150 Msa1069120:three_prime_UTR 15.0%
!! CTTATAAAATGTTTCATGAA+TGG + chr7_2:64654947-64654966 Msa1069120:CDS 20.0%
!!! TTTTATCACTTTAACAAAAG+TGG - chr7_2:64655161-64655180 None:intergenic 20.0%
!! CTTATAAAATGTTTCATGAA+TGG + chr7_2:64654947-64654966 Msa1069120:CDS 20.0%
!!! TTTTATCACTTTAACAAAAG+TGG - chr7_2:64655161-64655180 None:intergenic 20.0%
! GTATTTGACGTTAATGTTTA+TGG + chr7_2:64654494-64654513 Msa1069120:CDS 25.0%
!!! GAATAACACCTTTTTTGTTT+GGG - chr7_2:64654559-64654578 None:intergenic 25.0%
!!! AGAATAACACCTTTTTTGTT+TGG - chr7_2:64654560-64654579 None:intergenic 25.0%
! AAGAATTTGTGTGTAGAATT+AGG + chr7_2:64654665-64654684 Msa1069120:CDS 25.0%
!!! TTCAGTGCATTTGTTATAAT+TGG - chr7_2:64654740-64654759 None:intergenic 25.0%
! ATTGATCAGTAGTAAGAATT+TGG + chr7_2:64654983-64655002 Msa1069120:exon 25.0%
! GTATTTGACGTTAATGTTTA+TGG + chr7_2:64654494-64654513 Msa1069120:CDS 25.0%
!!! GAATAACACCTTTTTTGTTT+GGG - chr7_2:64654559-64654578 None:intergenic 25.0%
!!! AGAATAACACCTTTTTTGTT+TGG - chr7_2:64654560-64654579 None:intergenic 25.0%
! AAGAATTTGTGTGTAGAATT+AGG + chr7_2:64654665-64654684 Msa1069120:CDS 25.0%
!!! TTCAGTGCATTTGTTATAAT+TGG - chr7_2:64654740-64654759 None:intergenic 25.0%
! ATTGATCAGTAGTAAGAATT+TGG + chr7_2:64654983-64655002 Msa1069120:exon 25.0%
!! AAAAAGCATTCAAACTCTAG+TGG + chr7_2:64654026-64654045 Msa1069120:CDS 30.0%
GCTAAACTATTTGTTCAACA+TGG + chr7_2:64654233-64654252 Msa1069120:CDS 30.0%
CTTACCATAATTCGAAACTA+CGG - chr7_2:64654390-64654409 None:intergenic 30.0%
TAATGTTTATGGAGCTTTCT+TGG + chr7_2:64654505-64654524 Msa1069120:CDS 30.0%
AATGTTTATGGAGCTTTCTT+GGG + chr7_2:64654506-64654525 Msa1069120:CDS 30.0%
GTAATGATCCCAAACAAAAA+AGG + chr7_2:64654548-64654567 Msa1069120:CDS 30.0%
TGTGTAGAATTAGGACAATA+TGG + chr7_2:64654674-64654693 Msa1069120:CDS 30.0%
GTGTAGAATTAGGACAATAT+GGG + chr7_2:64654675-64654694 Msa1069120:CDS 30.0%
!! GCATTTGTTATAATTGGAGT+AGG - chr7_2:64654734-64654753 None:intergenic 30.0%
GAATATGAACAAGAGTGAAA+TGG + chr7_2:64654757-64654776 Msa1069120:CDS 30.0%
ATTCTTACTACTGATCAATG+TGG - chr7_2:64654982-64655001 None:intergenic 30.0%
CAGTAGTAAGAATTTGGATT+CGG + chr7_2:64654989-64655008 Msa1069120:exon 30.0%
! AAAATGCTTCATTGCACTTT+TGG - chr7_2:64655188-64655207 None:intergenic 30.0%
!! AAAAAGCATTCAAACTCTAG+TGG + chr7_2:64654026-64654045 Msa1069120:CDS 30.0%
GCTAAACTATTTGTTCAACA+TGG + chr7_2:64654233-64654252 Msa1069120:CDS 30.0%
CTTACCATAATTCGAAACTA+CGG - chr7_2:64654390-64654409 None:intergenic 30.0%
TAATGTTTATGGAGCTTTCT+TGG + chr7_2:64654505-64654524 Msa1069120:CDS 30.0%
AATGTTTATGGAGCTTTCTT+GGG + chr7_2:64654506-64654525 Msa1069120:CDS 30.0%
GTAATGATCCCAAACAAAAA+AGG + chr7_2:64654548-64654567 Msa1069120:CDS 30.0%
TGTGTAGAATTAGGACAATA+TGG + chr7_2:64654674-64654693 Msa1069120:CDS 30.0%
GTGTAGAATTAGGACAATAT+GGG + chr7_2:64654675-64654694 Msa1069120:CDS 30.0%
!! GCATTTGTTATAATTGGAGT+AGG - chr7_2:64654734-64654753 None:intergenic 30.0%
GAATATGAACAAGAGTGAAA+TGG + chr7_2:64654757-64654776 Msa1069120:CDS 30.0%
ATTCTTACTACTGATCAATG+TGG - chr7_2:64654982-64655001 None:intergenic 30.0%
CAGTAGTAAGAATTTGGATT+CGG + chr7_2:64654989-64655008 Msa1069120:exon 30.0%
! AAAATGCTTCATTGCACTTT+TGG - chr7_2:64655188-64655207 None:intergenic 30.0%
TCTTCCATGGCTTCAATTAT+TGG + chr7_2:64654066-64654085 Msa1069120:CDS 35.0%
TTTGCCAATAATTGAAGCCA+TGG - chr7_2:64654073-64654092 None:intergenic 35.0%
TGGCTTCAATTATTGGCAAA+AGG + chr7_2:64654073-64654092 Msa1069120:CDS 35.0%
GGCAAAAGGTAACTATATTG+TGG + chr7_2:64654087-64654106 Msa1069120:intron 35.0%
GGTAAAGTAGCAATAATCAC+AGG + chr7_2:64654182-64654201 Msa1069120:CDS 35.0%
AAAGTAGCAATAATCACAGG+AGG + chr7_2:64654185-64654204 Msa1069120:CDS 35.0%
GCAGATATTCAAGATGAAGT+AGG + chr7_2:64654272-64654291 Msa1069120:CDS 35.0%
TCTTCCAAGTTCATTGCAAA+GGG - chr7_2:64654303-64654322 None:intergenic 35.0%
TTCTTCCAAGTTCATTGCAA+AGG - chr7_2:64654304-64654323 None:intergenic 35.0%
GATACCGTAGTTTCGAATTA+TGG + chr7_2:64654383-64654402 Msa1069120:CDS 35.0%
GACATCATGTTTAACAATGC+TGG + chr7_2:64654413-64654432 Msa1069120:CDS 35.0%
! ATGATAGCGAAGCTTTCAAA+AGG + chr7_2:64654471-64654490 Msa1069120:CDS 35.0%
! TGATAGCGAAGCTTTCAAAA+GGG + chr7_2:64654472-64654491 Msa1069120:CDS 35.0%
AAAGTGAATTGTATCTCACC+AGG + chr7_2:64654701-64654720 Msa1069120:CDS 35.0%
GATGCTTCAAAGTTTGTGAA+TGG + chr7_2:64654866-64654885 Msa1069120:CDS 35.0%
!! GAATGGAGTCAACTTTGTTT+TGG + chr7_2:64654883-64654902 Msa1069120:CDS 35.0%
AGAAGTGAATGACATATTGG+TGG - chr7_2:64654924-64654943 None:intergenic 35.0%
TGCAGAAGTGAATGACATAT+TGG - chr7_2:64654927-64654946 None:intergenic 35.0%
TTACTACTGATCAATGTGGT+TGG - chr7_2:64654978-64654997 None:intergenic 35.0%
AACTGCACTGAACTATTATG+AGG + chr7_2:64655021-64655040 Msa1069120:three_prime_UTR 35.0%
CACACTAGTTACAAATCAGA+GGG - chr7_2:64655222-64655241 None:intergenic 35.0%
TCACACTAGTTACAAATCAG+AGG - chr7_2:64655223-64655242 None:intergenic 35.0%
TCTTCCATGGCTTCAATTAT+TGG + chr7_2:64654066-64654085 Msa1069120:CDS 35.0%
TTTGCCAATAATTGAAGCCA+TGG - chr7_2:64654073-64654092 None:intergenic 35.0%
TGGCTTCAATTATTGGCAAA+AGG + chr7_2:64654073-64654092 Msa1069120:CDS 35.0%
GGCAAAAGGTAACTATATTG+TGG + chr7_2:64654087-64654106 Msa1069120:intron 35.0%
GGTAAAGTAGCAATAATCAC+AGG + chr7_2:64654182-64654201 Msa1069120:CDS 35.0%
AAAGTAGCAATAATCACAGG+AGG + chr7_2:64654185-64654204 Msa1069120:CDS 35.0%
GCAGATATTCAAGATGAAGT+AGG + chr7_2:64654272-64654291 Msa1069120:CDS 35.0%
TCTTCCAAGTTCATTGCAAA+GGG - chr7_2:64654303-64654322 None:intergenic 35.0%
TTCTTCCAAGTTCATTGCAA+AGG - chr7_2:64654304-64654323 None:intergenic 35.0%
GATACCGTAGTTTCGAATTA+TGG + chr7_2:64654383-64654402 Msa1069120:CDS 35.0%
GACATCATGTTTAACAATGC+TGG + chr7_2:64654413-64654432 Msa1069120:CDS 35.0%
! ATGATAGCGAAGCTTTCAAA+AGG + chr7_2:64654471-64654490 Msa1069120:CDS 35.0%
! TGATAGCGAAGCTTTCAAAA+GGG + chr7_2:64654472-64654491 Msa1069120:CDS 35.0%
AAAGTGAATTGTATCTCACC+AGG + chr7_2:64654701-64654720 Msa1069120:CDS 35.0%
GATGCTTCAAAGTTTGTGAA+TGG + chr7_2:64654866-64654885 Msa1069120:CDS 35.0%
!! GAATGGAGTCAACTTTGTTT+TGG + chr7_2:64654883-64654902 Msa1069120:CDS 35.0%
AGAAGTGAATGACATATTGG+TGG - chr7_2:64654924-64654943 None:intergenic 35.0%
TGCAGAAGTGAATGACATAT+TGG - chr7_2:64654927-64654946 None:intergenic 35.0%
TTACTACTGATCAATGTGGT+TGG - chr7_2:64654978-64654997 None:intergenic 35.0%
AACTGCACTGAACTATTATG+AGG + chr7_2:64655021-64655040 Msa1069120:three_prime_UTR 35.0%
CACACTAGTTACAAATCAGA+GGG - chr7_2:64655222-64655241 None:intergenic 35.0%
TCACACTAGTTACAAATCAG+AGG - chr7_2:64655223-64655242 None:intergenic 35.0%
CATTCAAACTCTAGTGGAGT+TGG + chr7_2:64654032-64654051 Msa1069120:CDS 40.0%
CAAGTAATCTCTCTTTGTGC+AGG + chr7_2:64654153-64654172 Msa1069120:intron 40.0%
CAATCCCTTTGCAATGAACT+TGG + chr7_2:64654296-64654315 Msa1069120:CDS 40.0%
TTCTTCAAAGCATGCATCAG+TGG + chr7_2:64654634-64654653 Msa1069120:CDS 40.0%
TCTTCAAAGCATGCATCAGT+GGG + chr7_2:64654635-64654654 Msa1069120:CDS 40.0%
!! GAGAAAGTTTTGTCCTCAGT+TGG + chr7_2:64654779-64654798 Msa1069120:CDS 40.0%
AGAGGCTATTCTTGAAGTTG+AGG + chr7_2:64654811-64654830 Msa1069120:CDS 40.0%
TGAAGTTGAGGATATAGCTG+AGG + chr7_2:64654823-64654842 Msa1069120:CDS 40.0%
!!! GGAGTCAACTTTGTTTTGGA+TGG + chr7_2:64654887-64654906 Msa1069120:CDS 40.0%
!!! GTCAACTTTGTTTTGGATGG+AGG + chr7_2:64654890-64654909 Msa1069120:CDS 40.0%
ATAGTTCAGTGCAGTTGTTG+AGG - chr7_2:64655017-64655036 None:intergenic 40.0%
CATTCAAACTCTAGTGGAGT+TGG + chr7_2:64654032-64654051 Msa1069120:CDS 40.0%
CAAGTAATCTCTCTTTGTGC+AGG + chr7_2:64654153-64654172 Msa1069120:intron 40.0%
CAATCCCTTTGCAATGAACT+TGG + chr7_2:64654296-64654315 Msa1069120:CDS 40.0%
TTCTTCAAAGCATGCATCAG+TGG + chr7_2:64654634-64654653 Msa1069120:CDS 40.0%
TCTTCAAAGCATGCATCAGT+GGG + chr7_2:64654635-64654654 Msa1069120:CDS 40.0%
!! GAGAAAGTTTTGTCCTCAGT+TGG + chr7_2:64654779-64654798 Msa1069120:CDS 40.0%
AGAGGCTATTCTTGAAGTTG+AGG + chr7_2:64654811-64654830 Msa1069120:CDS 40.0%
TGAAGTTGAGGATATAGCTG+AGG + chr7_2:64654823-64654842 Msa1069120:CDS 40.0%
!!! GGAGTCAACTTTGTTTTGGA+TGG + chr7_2:64654887-64654906 Msa1069120:CDS 40.0%
!!! GTCAACTTTGTTTTGGATGG+AGG + chr7_2:64654890-64654909 Msa1069120:CDS 40.0%
ATAGTTCAGTGCAGTTGTTG+AGG - chr7_2:64655017-64655036 None:intergenic 40.0%
TCAAACTCTAGTGGAGTTGG+TGG + chr7_2:64654035-64654054 Msa1069120:CDS 45.0%
! CAAACTCTAGTGGAGTTGGT+GGG + chr7_2:64654036-64654055 Msa1069120:CDS 45.0%
GGTGGGAAAATCATCTTCCA+TGG + chr7_2:64654053-64654072 Msa1069120:CDS 45.0%
!! ATAATCACAGGAGGTGCTAG+TGG + chr7_2:64654194-64654213 Msa1069120:CDS 45.0%
! AGTGTTGCTACAGAAACTGC+TGG + chr7_2:64654590-64654609 Msa1069120:CDS 45.0%
ATTGGAGTAGGAATAGCTCC+TGG - chr7_2:64654722-64654741 None:intergenic 45.0%
CTCTTTCAACACACCAACTG+AGG - chr7_2:64654795-64654814 None:intergenic 45.0%
! CTCAGTTGGTGTGTTGAAAG+AGG + chr7_2:64654793-64654812 Msa1069120:CDS 45.0%
CTACTGATCAATGTGGTTGG+TGG - chr7_2:64654975-64654994 None:intergenic 45.0%
TCAAACTCTAGTGGAGTTGG+TGG + chr7_2:64654035-64654054 Msa1069120:CDS 45.0%
! CAAACTCTAGTGGAGTTGGT+GGG + chr7_2:64654036-64654055 Msa1069120:CDS 45.0%
GGTGGGAAAATCATCTTCCA+TGG + chr7_2:64654053-64654072 Msa1069120:CDS 45.0%
!! ATAATCACAGGAGGTGCTAG+TGG + chr7_2:64654194-64654213 Msa1069120:CDS 45.0%
! AGTGTTGCTACAGAAACTGC+TGG + chr7_2:64654590-64654609 Msa1069120:CDS 45.0%
ATTGGAGTAGGAATAGCTCC+TGG - chr7_2:64654722-64654741 None:intergenic 45.0%
CTCTTTCAACACACCAACTG+AGG - chr7_2:64654795-64654814 None:intergenic 45.0%
! CTCAGTTGGTGTGTTGAAAG+AGG + chr7_2:64654793-64654812 Msa1069120:CDS 45.0%
CTACTGATCAATGTGGTTGG+TGG - chr7_2:64654975-64654994 None:intergenic 45.0%
CTCTCTTTGTGCAGGCTTGA+AGG + chr7_2:64654161-64654180 Msa1069120:intron 50.0%
!! ACAGGAGGTGCTAGTGGAAT+TGG + chr7_2:64654200-64654219 Msa1069120:CDS 50.0%
CTCTCTTTGTGCAGGCTTGA+AGG + chr7_2:64654161-64654180 Msa1069120:intron 50.0%
!! ACAGGAGGTGCTAGTGGAAT+TGG + chr7_2:64654200-64654219 Msa1069120:CDS 50.0%
TGGGTGCTAAGCATGCTGCT+AGG + chr7_2:64654525-64654544 Msa1069120:CDS 55.0%
GGGTGCTAAGCATGCTGCTA+GGG + chr7_2:64654526-64654545 Msa1069120:CDS 55.0%
TGGGTGCTAAGCATGCTGCT+AGG + chr7_2:64654525-64654544 Msa1069120:CDS 55.0%
GGGTGCTAAGCATGCTGCTA+GGG + chr7_2:64654526-64654545 Msa1069120:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 64653911 64655291 64653911 ID=Msa1069120;Name=Msa1069120
chr7_2 mRNA 64653911 64655291 64653911 ID=Msa1069120-mRNA-1;Parent=Msa1069120;Name=Msa1069120-mRNA-1;_AED=0.02;_eAED=0.02;_QI=83|1|1|1|1|1|2|297|306
chr7_2 exon 64653911 64654094 64653911 ID=Msa1069120-mRNA-1:exon:13473;Parent=Msa1069120-mRNA-1
chr7_2 exon 64654175 64655291 64654175 ID=Msa1069120-mRNA-1:exon:13474;Parent=Msa1069120-mRNA-1
chr7_2 five_prime_UTR 64653911 64653993 64653911 ID=Msa1069120-mRNA-1:five_prime_utr;Parent=Msa1069120-mRNA-1
chr7_2 CDS 64653994 64654094 64653994 ID=Msa1069120-mRNA-1:cds;Parent=Msa1069120-mRNA-1
chr7_2 CDS 64654175 64654994 64654175 ID=Msa1069120-mRNA-1:cds;Parent=Msa1069120-mRNA-1
chr7_2 three_prime_UTR 64654995 64655291 64654995 ID=Msa1069120-mRNA-1:three_prime_utr;Parent=Msa1069120-mRNA-1
Gene Sequence

>Msa1069120

ATGCATTTAAAAAAACAAAAATCTGCTACTATAAAAAGCATTCAAACTCTAGTGGAGTTGGTGGGAAAATCATCTTCCATGGCTTCAATTATTGGCAAAAGGCTTGAAGGTAAAGTAGCAATAATCACAGGAGGTGCTAGTGGAATTGGTGCAGCTACTGCTAAACTATTTGTTCAACATGGTGCTAAAGTTGTGATTGCAGATATTCAAGATGAAGTAGGTCAATCCCTTTGCAATGAACTTGGAAGAAAGAACATTCTCTATGTTCACTGTAATGTAACTATTGAATCAGACATAAAAAACGTTGTTGATACCGTAGTTTCGAATTATGGTAAGCTTGACATCATGTTTAACAATGCTGGTATCTCAGATGACAAAAACCGAGAAATATTAAATTATGATAGCGAAGCTTTCAAAAGGGTATTTGACGTTAATGTTTATGGAGCTTTCTTGGGTGCTAAGCATGCTGCTAGGGTAATGATCCCAAACAAAAAAGGTGTTATTCTTTTTACTGCAAGTGTTGCTACAGAAACTGCTGGTGAATCAACACATGCTTATTCTTCTTCAAAGCATGCATCAGTGGGACTTATGAAGAATTTGTGTGTAGAATTAGGACAATATGGGATTAAAGTGAATTGTATCTCACCAGGAGCTATTCCTACTCCAATTATAACAAATGCACTGAATATGAACAAGAGTGAAATGGAGAAAGTTTTGTCCTCAGTTGGTGTGTTGAAAGAGGCTATTCTTGAAGTTGAGGATATAGCTGAGGCAGCACTTTATTTGAGCAGTGATGCTTCAAAGTTTGTGAATGGAGTCAACTTTGTTTTGGATGGAGGTTATAGCACCACCAATATGTCATTCACTTCTGCACTTATAAAATGTTTCATGAATGGCACCACCAACCACATTGATCAGTAG
Protein sequence

>Msa1069120

MHLKKQKSATIKSIQTLVELVGKSSSMASIIGKRLEGKVAIITGGASGIGAATAKLFVQHGAKVVIADIQDEVGQSLCNELGRKNILYVHCNVTIESDIKNVVDTVVSNYGKLDIMFNNAGISDDKNREILNYDSEAFKRVFDVNVYGAFLGAKHAARVMIPNKKGVILFTASVATETAGESTHAYSSSKHASVGLMKNLCVELGQYGIKVNCISPGAIPTPIITNALNMNKSEMEKVLSSVGVLKEAILEVEDIAEAALYLSSDASKFVNGVNFVLDGGYSTTNMSFTSALIKCFMNGTTNHIDQ*