AlfalfaGEDB | Msa1069290

M. sativa cultivar zhongmu-4 / Msa1069290

KEGG: -
GO: -
PFAM: PF02985.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069290	AES80605.2	97.449	1176	30	0	1	1176	1	1176	0.0	2360

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069290	sp\|Q08BT5\|RELCH_XENTR	26.603	1154	649	33	10	1090	114	1142	4.90e-89	316

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069290	G7KV74	97.449	1176	30	0	1	1176	1	1176	0.0	2360

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0434290	Msa1069290	0.814034	1.892382e-51	-8.615850e-47
Msa0522150	Msa1069290	0.802006	6.885145e-49	-8.615850e-47
Msa1069290	Msa1157140	0.873467	1.437253e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069290	MtrunA17_Chr6g0449101	68.379	1129	283	11	86	1175	1	1094	0.0	1509
Msa1069290	MtrunA17_Chr7g0251221	97.087	618	18	0	1	618	1	618	0.0	1217
Msa1069290	MtrunA17_Chr7g0251211	95.913	416	15	1	617	1032	1	414	0.0	824
Msa1069290	MtrunA17_Chr7g0251201	96.732	153	5	0	1024	1176	1	153	1.89e-99	311
Msa1069290	MtrunA17_Chr6g0449091	77.143	70	16	0	5	74	7	76	2.31e-30	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069290	AT5G16210.1	65.254	1203	366	13	1	1176	1	1178	0.0	1546

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Find 252 sgRNAs with CRISPR-Local

Find 656 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCAGCCAACAGAAG+CGG	0.626354	7_2:+64827088	None:intergenic
AAAATGTCATTGCAGTAAGA+CGG	0.605902	7_2:+64832570	None:intergenic
AAACGTGGATAAATATTTCA+AGG	0.494306	7_2:-64828460	Msa1069290:intron
AAAGCAAAAGCCCAAGAGGA+TGG	0.604827	7_2:-64825423	Msa1069290:CDS
AAAGCACTGTTTGTATTTGC+AGG	0.320048	7_2:+64829645	None:intergenic
AACAATCCTTGGAGCACCAA+AGG	0.537409	7_2:-64830067	Msa1069290:CDS
AACACTTCCTTCACCGATTT+GGG	0.289305	7_2:-64832662	Msa1069290:CDS
AACAGCAATAGTAGCTTCAT+GGG	0.530053	7_2:+64826397	None:intergenic
AACAGTTAGCAGGATATTTA+AGG	0.212445	7_2:-64827045	Msa1069290:CDS
AACCTGTAGCATCCAGAGCA+CGG	0.610507	7_2:+64826080	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGATTGATGAATTGCGT+CGG	+	chr7_2:64825129-64825148	None:intergenic	30.0%
GTTAATTGAGGAGTTCAATT+CGG	-	chr7_2:64825714-64825733	Msa1069290:CDS	30.0%
TCTTTGCTTATAATAGTGAC+CGG	+	chr7_2:64826023-64826042	None:intergenic	30.0%
TTGTTTATAATAGTGACTGG+AGG	-	chr7_2:64826097-64826116	Msa1069290:CDS	30.0%
TGTTTATAATAGTGACTGGA+GGG	-	chr7_2:64826098-64826117	Msa1069290:CDS	30.0%
GACAATGCATAATATATGCA+AGG	-	chr7_2:64826371-64826390	Msa1069290:CDS	30.0%
AGATTACAAGTACTTGAGAA+CGG	+	chr7_2:64826592-64826611	None:intergenic	30.0%
ATCTAACCTGACTGATATTT+AGG	-	chr7_2:64826608-64826627	Msa1069290:CDS	30.0%
TTCTCTTCAAACAAACTTTG+AGG	+	chr7_2:64826748-64826767	None:intergenic	30.0%
TTTGTTTGAAGAGAAAGAAG+CGG	-	chr7_2:64826753-64826772	Msa1069290:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	64825112	64835280	64825112	ID=Msa1069290;Name=Msa1069290
chr7_2	mRNA	64825112	64835280	64825112	ID=Msa1069290-mRNA-1;Parent=Msa1069290;Name=Msa1069290-mRNA-1;_AED=0.11;_eAED=0.11;_QI=221\|0.94\|0.9\|1\|1\|1\|20\|298\|1176
chr7_2	exon	64825112	64825786	64825112	ID=Msa1069290-mRNA-1:exon:13572;Parent=Msa1069290-mRNA-1
chr7_2	exon	64826083	64826169	64826083	ID=Msa1069290-mRNA-1:exon:13571;Parent=Msa1069290-mRNA-1
chr7_2	exon	64826306	64826468	64826306	ID=Msa1069290-mRNA-1:exon:13570;Parent=Msa1069290-mRNA-1
chr7_2	exon	64826559	64826699	64826559	ID=Msa1069290-mRNA-1:exon:13569;Parent=Msa1069290-mRNA-1
chr7_2	exon	64826776	64826881	64826776	ID=Msa1069290-mRNA-1:exon:13568;Parent=Msa1069290-mRNA-1
chr7_2	exon	64826962	64827163	64826962	ID=Msa1069290-mRNA-1:exon:13567;Parent=Msa1069290-mRNA-1
chr7_2	exon	64827227	64827359	64827227	ID=Msa1069290-mRNA-1:exon:13566;Parent=Msa1069290-mRNA-1
chr7_2	exon	64827456	64827573	64827456	ID=Msa1069290-mRNA-1:exon:13565;Parent=Msa1069290-mRNA-1
chr7_2	exon	64827792	64828006	64827792	ID=Msa1069290-mRNA-1:exon:13564;Parent=Msa1069290-mRNA-1
chr7_2	exon	64828103	64828255	64828103	ID=Msa1069290-mRNA-1:exon:13563;Parent=Msa1069290-mRNA-1
chr7_2	exon	64828461	64828670	64828461	ID=Msa1069290-mRNA-1:exon:13562;Parent=Msa1069290-mRNA-1
chr7_2	exon	64828758	64828832	64828758	ID=Msa1069290-mRNA-1:exon:13561;Parent=Msa1069290-mRNA-1
chr7_2	exon	64828908	64829036	64828908	ID=Msa1069290-mRNA-1:exon:13560;Parent=Msa1069290-mRNA-1
chr7_2	exon	64829109	64829183	64829109	ID=Msa1069290-mRNA-1:exon:13559;Parent=Msa1069290-mRNA-1
chr7_2	exon	64829566	64830102	64829566	ID=Msa1069290-mRNA-1:exon:13558;Parent=Msa1069290-mRNA-1
chr7_2	exon	64830182	64830352	64830182	ID=Msa1069290-mRNA-1:exon:13557;Parent=Msa1069290-mRNA-1
chr7_2	exon	64831526	64831633	64831526	ID=Msa1069290-mRNA-1:exon:13556;Parent=Msa1069290-mRNA-1
chr7_2	exon	64832562	64832743	64832562	ID=Msa1069290-mRNA-1:exon:13555;Parent=Msa1069290-mRNA-1
chr7_2	exon	64833506	64833655	64833506	ID=Msa1069290-mRNA-1:exon:13554;Parent=Msa1069290-mRNA-1
chr7_2	exon	64834861	64835280	64834861	ID=Msa1069290-mRNA-1:exon:13553;Parent=Msa1069290-mRNA-1
chr7_2	five_prime_UTR	64835060	64835280	64835060	ID=Msa1069290-mRNA-1:five_prime_utr;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64834861	64835059	64834861	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64833506	64833655	64833506	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64832562	64832743	64832562	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64831526	64831633	64831526	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64830182	64830352	64830182	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64829566	64830102	64829566	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64829109	64829183	64829109	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64828908	64829036	64828908	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64828758	64828832	64828758	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64828461	64828670	64828461	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64828103	64828255	64828103	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64827792	64828006	64827792	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64827456	64827573	64827456	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64827227	64827359	64827227	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64826962	64827163	64826962	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64826776	64826881	64826776	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64826559	64826699	64826559	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64826306	64826468	64826306	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64826083	64826169	64826083	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	CDS	64825410	64825786	64825410	ID=Msa1069290-mRNA-1:cds;Parent=Msa1069290-mRNA-1
chr7_2	three_prime_UTR	64825112	64825409	64825112	ID=Msa1069290-mRNA-1:three_prime_utr;Parent=Msa1069290-mRNA-1

Gene Sequence

>Msa1069290

ATGAACGTAGATAGATCATCGCTTTGCAATTGCGTTGTCAACTTTCTGTTAGAAGAGAATTACGTACTCACAGCATTTGAACTTCTTCACGAGCTTCTCGATGATGGTCACGATGATCAAGCTATTCGTCTTAAACAGTATTTCTCCGATCAATCTCTCTTTCCCGCCGATCAAATCTCTCGCCTCAATTCTCTCCGAGTGGCAGATCCTCAAAGTTTGTTTGAAGAGAAAGAAGCGGCAACAGAAAAGTTAGCAATTAGTGATTATGAATTGCGTTTGGCCCAAGAAGACATCTCAAAACTCAAGAGTGAATTGCAGAAGAAGACAGAAAACAGTAATGAACAAAGTGCTACACAGTTAAGTGGAGATGTTTCAGCGAACGATGGGCAACAAATTCAACAGCAAAAGAACACTTCCTTCACCGATTTGGGTCCGTTAAAGGATACTGAACGTCAAGATCTGAATTGTGCTGTAAAGGAATATTTACTTTTAGCTGGTTACCGTCTTACTGCAATGACATTTTATGAAGAGGTTACAGACCAGAACTTGGACATTTGGCACAACACACCTGCATCTGTACCTGATGCCTTGCGGCATTATTATTATCAATATCTTTCATCAACTTCGGAGGCGGCTGAGGAAAAATTTTCTTTACTTCAAGAGAATGAAAAATTGCTGAAATCGAATAAGAAGCTTAATCAAGAAAAGGAAACCTTATTGAAGAACAAAGATTTGGCTGATGCTCAAATTGGAACCTTAACTAAATCTTTGGAGGCAATGCAGAAAGATATTAGAGACAAAGAGAACCAGGTGCTAGTTTTAAAACAATCCTTGGAGCACCAAAGGAAAGAGCTCAATGATTGCAGAGCTGAGATCACTTCACTGAAAATGCATATTGAAGGTTCTTTCTCAGGAAATAATCTGGCTGGCAAAGAAGTTAATAATGTTCAGTCTCAATCTTTAGAGAAGTACGAGGAAGAAATTAAAAAATTGCAGGTGGAAATTGAATCGCTGAAGGAAAAGAATGCAAGAGCTCATGAACCTGGAAATTTTGTCAGTTCTGAAATGGAAAATTTACAGACAGATGATAAAGTTATTGAGATTCATGAAGACCAAGGTACAATCTCAAATCCTGGTGATGCGGTGGTTGGTGCTGTACACAATGAAGATGCTCAATCATCAGCTGTTCAACTTCTGAATGAGAATGCAAATAACCATGAAGATACCTTGCTCAAATTAGTTAATCCTGCAAATACAAACAGTGCTTTCGAAAATATAAAAAATGACTCCGAACAAAATTTTGGTCAACAAGAAGTGGACACTGGATTACATGAAAAATCAGACATTGGATTAGGAACAGTTCAGATACTTGCAGATGCTTTGCCTAAAATCGTTCCTTATGTCTTGATCAATCATCGTGAGGAGCTCCTTCCTCTAATAATGTGTGCTATCGAGCGCCACCCAGACAGCAGCACTCGAGATTCTTTGACCCACACATTGTTTAATTTAATCAAACGTCCAGATGAGCAGCAGAGACGAATAATAATGGATGCATGTGTCAGCCTTGCAAAGAATGTCGGAGAGATGAGAACAGAAACAGAATTGCTTCCACAGTGCTGGGAACAAATCAGTCACATGTACGAGGAGCGTAGGTTGCTTGTGGCTCAGTCATGTGGAGAGCTTGCAGAATTCGTACGGCCTGAGATTCGTGATTCTCTTATTTTATCTATTGTACAGCAACTAATAGAAGACTCTGCCAGTGTTGTTCGAGAGGGTGCAGCTCGAAATCTAGCTATGCTGCTTCCACTTTTCCCAAACGTGGATAAATATTTCAAGGTGGAGGAGCTAATGTTCCAATTAGTATGTGACCCGACTGGAGTGGTGGTGGAAACTGCTCTCAATGAATTGGTTCCTGCAGTTATAGAGTGGGGAAACAATTTAGATCATGTTTTGAGAGTTTTACTTTCTCATATTTTAAACTCAGCTCTGCGTTGTCCGCCTCTTTCTGGGGTTGAAGGGTCTATAGAGTCACATCTCCGTGTATTGGGTGAAAGAGAGCACTGGAACGTAGATGTTTTGTTGAAAATGCTGATGAAATTGCTCCCTTTCGTGCACCAAAAAGCATTTGACACATGCCCCTTCTTGTCCACCACAGAAACTACACCAACTGTGTTATCTATCCCATTGCTTGAATTGTATGCTAGGGGACAAGTTGAATGGGCAACATTTGAGTGGATGCATGTTGAGTGTTTTCCAAATTTGATACAGCTGGCCAGCTTGTTGCCACAGAAAGAAGATAATTTACGGAGCCGAGTTTCGAAGTTTCTGTTATCCGTTTCTGAATGTTTTGGGGAGTCCTACGTGACATGCATAATGCTACCAGTATTTTTAATTGCAGTAGGGGATGATGCAGATTTGACTTTTTTTCCTACTGCCATTCATTCAAGAATTAAAGGTTTGAGGCCAAGATCTGCCATTGCCGATAGGCTTTCTACAATGTGTGTCTTACCGCTTCTGTTGGCTGGTGTTTTGAGTGCTCCTGGAAAACATGAACAGTTAGCAGGATATTTAAGGAAGCTGCTACTAGAAGATAACTCCATGGAAAATCGATCAACCAAGCACACTCCTGAGATTATCAATGCTATCCGCTTCATTTGCACATATGAAGAAAACCATGGCATGGTATTTAATATATTATGGGAAATGGTGGTCAGCTCTAACATGAGCATGAAAATAACTGCCGCCCAGCTGCTGAAAGTTATTGTTCCATATATTGATGCAAAGGCTGCTTCAACTCATGTTTTGCCTGCTCTAGTTACTCTTGGATCTGATCAAAACCTGAATGTAAAGTATGCCAGCATAGATGCATTTGGTGCAGTGGCTCAGCACTTCAAAAATGAGATGATTGTTGACAAGATACGTGTTCAAATGGACGCTTTTCTTGAAGATGGTTCCCATGAAGCTACTATTGCTGTTATTCGTGCGTTGGTGATTGCCGTACCACATACAATAGAAAGACTTAGAGATTATATCCTTAACCTTATTTCTGGAAAAAATGTTTGGAGAACAATGCCAAATGTGGCAAAAGATTTAATGCGTCGACGAGAGAGAGCTGATGCATTCTGTGAGGCAATCCGTGCTCTGGATGCTACAGATCTTCCTGCAAATAGTGTTCGGGACTTCTTCCTCCCTGCTATACAGAACCTCTTGAAAGACTTGGATGCACTGGATCCAGCTCACAAAGAAGCCCTTGAAATTATTATGAAGGAAAGATCAGGAGGAACTTTTGAGACTATTAGCAAGGTAATGGGTGCCCATCTTGGGCTTCCATCATCAGTTAGCAACTTCTTTGGTGAGGGTGGGTTGCTCGGAAAGAAAGAAGCCACTGAGCCACCAACAGAGGCAACTGTGTCCCCCAAGGCTGCCACTCCACCAGCAGAGGACACTAGATTCAGACGCATCATGCTGGGAAATTTCAGTGATATGCTTCGTGGTAAAGCAAAAGCCCAAGAGGATGGTCAGAACCAATAA

Protein sequence

>Msa1069290

MNVDRSSLCNCVVNFLLEENYVLTAFELLHELLDDGHDDQAIRLKQYFSDQSLFPADQISRLNSLRVADPQSLFEEKEAATEKLAISDYELRLAQEDISKLKSELQKKTENSNEQSATQLSGDVSANDGQQIQQQKNTSFTDLGPLKDTERQDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDIWHNTPASVPDALRHYYYQYLSSTSEAAEEKFSLLQENEKLLKSNKKLNQEKETLLKNKDLADAQIGTLTKSLEAMQKDIRDKENQVLVLKQSLEHQRKELNDCRAEITSLKMHIEGSFSGNNLAGKEVNNVQSQSLEKYEEEIKKLQVEIESLKEKNARAHEPGNFVSSEMENLQTDDKVIEIHEDQGTISNPGDAVVGAVHNEDAQSSAVQLLNENANNHEDTLLKLVNPANTNSAFENIKNDSEQNFGQQEVDTGLHEKSDIGLGTVQILADALPKIVPYVLINHREELLPLIMCAIERHPDSSTRDSLTHTLFNLIKRPDEQQRRIIMDACVSLAKNVGEMRTETELLPQCWEQISHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLIEDSASVVREGAARNLAMLLPLFPNVDKYFKVEELMFQLVCDPTGVVVETALNELVPAVIEWGNNLDHVLRVLLSHILNSALRCPPLSGVEGSIESHLRVLGEREHWNVDVLLKMLMKLLPFVHQKAFDTCPFLSTTETTPTVLSIPLLELYARGQVEWATFEWMHVECFPNLIQLASLLPQKEDNLRSRVSKFLLSVSECFGESYVTCIMLPVFLIAVGDDADLTFFPTAIHSRIKGLRPRSAIADRLSTMCVLPLLLAGVLSAPGKHEQLAGYLRKLLLEDNSMENRSTKHTPEIINAIRFICTYEENHGMVFNILWEMVVSSNMSMKITAAQLLKVIVPYIDAKAASTHVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNEMIVDKIRVQMDAFLEDGSHEATIAVIRALVIAVPHTIERLRDYILNLISGKNVWRTMPNVAKDLMRRRERADAFCEAIRALDATDLPANSVRDFFLPAIQNLLKDLDALDPAHKEALEIIMKERSGGTFETISKVMGAHLGLPSSVSNFFGEGGLLGKKEATEPPTEATVSPKAATPPAEDTRFRRIMLGNFSDMLRGKAKAQEDGQNQ*