AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434290 MtrunA17_Chr3g0140561 92.654 422 3 2 1 394 111 532 0.0 811
Msa0434290 MtrunA17_Chr8g0340751 72.362 398 82 2 1 370 113 510 0.0 616
Msa0434290 MtrunA17_Chr6g0483461 59.338 423 142 4 1 395 103 523 0.0 533
Msa0434290 MtrunA17_Chr8g0392531 59.852 406 133 4 1 378 104 507 0.0 521
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434290 AT4G32850.9 72.967 418 85 2 1 390 108 525 0.0 640
Msa0434290 AT4G32850.5 72.967 418 85 2 1 390 108 525 0.0 640
Msa0434290 AT4G32850.8 72.967 418 85 2 1 390 108 525 0.0 640
Msa0434290 AT4G32850.6 72.967 418 85 2 1 390 108 525 0.0 640
Msa0434290 AT4G32850.2 72.967 418 85 2 1 390 108 525 0.0 640
Msa0434290 AT4G32850.1 72.967 418 85 2 1 390 108 525 0.0 639
Msa0434290 AT4G32850.10 72.967 418 85 2 1 390 108 525 0.0 639
Msa0434290 AT4G32850.3 72.967 418 85 2 1 390 108 525 0.0 639
Msa0434290 AT4G32850.13 72.967 418 85 2 1 390 108 525 0.0 638
Msa0434290 AT4G32850.15 72.967 418 85 2 1 390 108 525 0.0 638
Msa0434290 AT4G32850.16 72.967 418 85 2 1 390 108 525 0.0 638
Msa0434290 AT4G32850.4 72.967 418 85 2 1 390 108 525 0.0 638
Msa0434290 AT4G32850.17 72.967 418 85 2 1 390 108 525 0.0 638
Msa0434290 AT4G32850.14 72.967 418 85 2 1 390 108 525 0.0 638
Msa0434290 AT4G32850.12 72.967 418 85 2 1 390 108 525 0.0 638
Msa0434290 AT4G32850.11 72.967 418 85 2 1 390 108 525 0.0 638
Msa0434290 AT2G25850.4 72.683 410 84 2 1 382 110 519 0.0 638
Msa0434290 AT2G25850.1 71.770 418 90 2 1 390 110 527 0.0 638
Msa0434290 AT4G32850.7 72.967 418 85 2 1 390 108 525 0.0 638
Msa0434290 AT2G25850.3 71.770 418 90 2 1 390 110 527 0.0 637
Msa0434290 AT2G25850.2 71.770 418 90 2 1 390 110 527 0.0 637
Msa0434290 AT2G25850.9 71.770 418 90 2 1 390 110 527 0.0 636
Msa0434290 AT2G25850.6 71.770 418 90 2 1 390 110 527 0.0 635
Msa0434290 AT2G25850.7 71.770 418 90 2 1 390 110 527 0.0 635
Msa0434290 AT2G25850.8 71.770 418 90 2 1 390 110 527 0.0 635
Msa0434290 AT2G25850.5 71.770 418 90 2 1 390 110 527 0.0 635
Msa0434290 AT1G17980.1 59.949 392 127 4 1 364 98 487 3.74e-172 498
Msa0434290 AT1G17980.2 59.669 362 116 4 31 364 1 360 5.00e-157 455
Msa0434290 AT3G06560.1 32.300 387 206 10 1 355 86 448 3.03e-51 179

Find 170 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTAACATCCATCATTTC+AGG 0.158083 3_2:-87045653 None:intergenic
CAAACTGTTCGAAGTCTTAA+TGG 0.168443 3_2:+87044204 Msa0434290:CDS
AAACCATGCGGCTGAGAAAA+TGG 0.183581 3_2:+87045563 Msa0434290:CDS
GTATGCAAGCATATCTATTT+TGG 0.195681 3_2:+87043479 Msa0434290:CDS
TTTCGATGTGTTTAGGTTAC+TGG 0.209043 3_2:+87044513 Msa0434290:intron
GATTCCTTGGAGGAGTAAAT+TGG 0.220082 3_2:+87044535 Msa0434290:CDS
TGAAAGTTGTACTAGTAAAT+TGG 0.221124 3_2:+87045733 Msa0434290:three_prime_UTR
GGCTAATCAGATTAAGGTTT+TGG 0.224463 3_2:+87047243 Msa0434290:three_prime_UTR
GTCCGCTTCTCTGGTTTATC+TGG 0.228167 3_2:-87045674 None:intergenic
ACAGCACCCTCTTCCCAATT+TGG 0.235857 3_2:-87046149 None:intergenic
GCTTTGTAGGAGGATAATTT+TGG 0.238055 3_2:+87047100 Msa0434290:intron
TCTATAGGGCATAGCATTAC+AGG 0.238894 3_2:-87044660 None:intergenic
CTGTTGCTTTGCTGAGGTAC+TGG 0.247333 3_2:+87047169 Msa0434290:three_prime_UTR
AGGGTTCTTCTTCCTCTTGA+TGG 0.251063 3_2:-87045633 None:intergenic
TCACCTCGCAATTGAGGTTC+TGG 0.263013 3_2:-87046250 None:intergenic
ACGAACTGCATTTACCTATA+TGG 0.264976 3_2:+87044688 Msa0434290:CDS
AATGGAGGCTAATCAGATTA+AGG 0.289876 3_2:+87047237 Msa0434290:three_prime_UTR
TGGAATTTGAATTTCATTAC+TGG 0.299937 3_2:-87043435 None:intergenic
CGCCCTATTGTATATAAAAC+AGG 0.301593 3_2:+87047334 Msa0434290:three_prime_UTR
GAAACATAAATTTCCATTCC+CGG 0.321696 3_2:-87045465 None:intergenic
AATTTACTAGTACAACTTTC+AGG 0.325729 3_2:-87045731 None:intergenic
AACATACTAGGGATTGCATT+AGG 0.327078 3_2:-87044591 None:intergenic
TAAGCATAATTGCAGGTTCA+TGG 0.335996 3_2:+87043187 None:intergenic
CATATATTAACCTCGACATT+TGG 0.344144 3_2:-87044261 None:intergenic
CTAACAGATGTCCGCTTCTC+TGG 0.358311 3_2:-87045683 None:intergenic
TGCAGTTCGTTCTCTTCTAT+AGG 0.367427 3_2:-87044675 None:intergenic
GCAGTTCGTTCTCTTCTATA+GGG 0.376096 3_2:-87044674 None:intergenic
ATTGAATTTGGAAGTTTAGA+TGG 0.377967 3_2:+87047559 Msa0434290:three_prime_UTR
TTGTTGACTCCACTCATGAT+AGG 0.379040 3_2:+87045918 Msa0434290:three_prime_UTR
AACAACAAAGTTCCCACCTC+TGG 0.389216 3_2:-87047413 None:intergenic
GGGTATGCAGGAGTAATTAT+TGG 0.389243 3_2:-87044750 None:intergenic
GGGCATAGCATTACAGGGTT+TGG 0.397753 3_2:-87044654 None:intergenic
GCAATTGAGGTTCTGGGTGC+TGG 0.397766 3_2:-87046243 None:intergenic
GTTTAGGTTACTGGATTCCT+TGG 0.400709 3_2:+87044522 Msa0434290:intron
TGCAGAATGCGCACAAGGCT+TGG 0.402768 3_2:-87045325 None:intergenic
CTTTGCTGAGGTACTGGGAA+TGG 0.409726 3_2:+87047175 Msa0434290:three_prime_UTR
AATCTAGAAACCAACATACT+AGG 0.410770 3_2:-87044603 None:intergenic
AAATTATTATGTATGTATAC+TGG 0.413244 3_2:+87045439 Msa0434290:CDS
GCACAACATCCTTGCTGAAA+TGG 0.417902 3_2:+87043371 Msa0434290:CDS
CGAACTGCATTTACCTATAT+GGG 0.423486 3_2:+87044689 Msa0434290:CDS
CATACAAAACTGTACCTTCA+AGG 0.432406 3_2:-87045100 None:intergenic
GAAAGTTGTACTAGTAAATT+GGG 0.437207 3_2:+87045734 Msa0434290:three_prime_UTR
TCAAGGTTAGCTGTCTTAGC+CGG 0.437995 3_2:-87045083 None:intergenic
CGAGTGCGTTTGTAACCATC+TGG 0.438734 3_2:-87045525 None:intergenic
AGGTTCTGGGTGCTGGCAAT+TGG 0.448782 3_2:-87046236 None:intergenic
ATTGAAGGGGTTAGGCTAGA+TGG 0.450370 3_2:+87045785 Msa0434290:three_prime_UTR
TAGGTTACTGGATTCCTTGG+AGG 0.452048 3_2:+87044525 Msa0434290:intron
ACATACTAGGGATTGCATTA+GGG 0.455503 3_2:-87044590 None:intergenic
TGTTGCTTTGCTGAGGTACT+GGG 0.460057 3_2:+87047170 Msa0434290:three_prime_UTR
GAAGAAGAACCCTGAAATGA+TGG 0.460726 3_2:+87045643 Msa0434290:CDS
CACCTCGCAATTGAGGTTCT+GGG 0.462098 3_2:-87046249 None:intergenic
CAAGGTTAGCTGTCTTAGCC+GGG 0.470013 3_2:-87045082 None:intergenic
CATGGGCTTGCAAAGAAAAG+AGG 0.470510 3_2:+87045353 Msa0434290:CDS
TGCAAAATCTTATGCTACAC+TGG 0.471864 3_2:+87047144 Msa0434290:three_prime_UTR
GCTTAACATCCATCATTTCA+GGG 0.473503 3_2:-87045652 None:intergenic
ATTACTGGGACATGTGCATC+AGG 0.474856 3_2:-87043420 None:intergenic
AAGTCATCTGATGGACTCTC+AGG 0.475860 3_2:+87045845 Msa0434290:three_prime_UTR
GCAAATCTATAGATATTCCT+TGG 0.478520 3_2:-87043455 None:intergenic
CGGAACCGTCTGAGATATCC+AGG 0.480431 3_2:-87044161 None:intergenic
TGATGGACCTTCAGAAGAGC+TGG 0.481403 3_2:-87045616 None:intergenic
TAATGTGATACCTGTCCCTA+TGG 0.485105 3_2:-87044725 None:intergenic
TTTGCTGAGGTACTGGGAAT+GGG 0.485818 3_2:+87047176 Msa0434290:three_prime_UTR
GGGTCTATTCACAGTGGCGG+TGG 0.488614 3_2:+87044631 Msa0434290:intron
AACCATGCGGCTGAGAAAAT+GGG 0.488999 3_2:+87045564 Msa0434290:CDS
ATGAGTATCGAGTGTATTGA+AGG 0.491692 3_2:+87045770 Msa0434290:three_prime_UTR
GAATTCATGCAAGGGTATGC+AGG 0.493227 3_2:-87044762 None:intergenic
AGAAACTCACCTCGCAATTG+AGG 0.496667 3_2:-87046256 None:intergenic
AAGCACTCTTCGTGTTATGA+TGG 0.498529 3_2:+87044803 Msa0434290:CDS
TTTCACAAGGGCAGAATGTA+CGG 0.499588 3_2:+87046205 Msa0434290:three_prime_UTR
ATTCCTTGGAGGAGTAAATT+GGG 0.506443 3_2:+87044536 Msa0434290:CDS
GTTTGCTTGCGATGTGGATG+TGG 0.508377 3_2:+87047433 Msa0434290:three_prime_UTR
GATACGACAAAGTGCAACTC+TGG 0.509921 3_2:+87045591 Msa0434290:CDS
ATACACTCGATACTCATTTG+AGG 0.510734 3_2:-87045764 None:intergenic
CAAAGAAAAGAGGGAGTAAG+AGG 0.511284 3_2:+87045363 Msa0434290:CDS
ATCTAGAAACCAACATACTA+GGG 0.511391 3_2:-87044602 None:intergenic
CTCATGATAGGCTGAAATCA+AGG 0.514106 3_2:+87045930 Msa0434290:three_prime_UTR
GCTAAGACAGCTAACCTTGA+AGG 0.516604 3_2:+87045086 Msa0434290:CDS
TTTCTGCGAGGATCCCATAT+AGG 0.521287 3_2:-87044702 None:intergenic
TCGAGTGTATTGAAGGGGTT+AGG 0.521648 3_2:+87045777 Msa0434290:three_prime_UTR
TGTATACTGGAAGCCGGGAA+TGG 0.522453 3_2:+87045452 Msa0434290:CDS
TATGTATGTATACTGGAAGC+CGG 0.523871 3_2:+87045446 Msa0434290:CDS
CTATAGGGCATAGCATTACA+GGG 0.524690 3_2:-87044659 None:intergenic
GGGACATGTGCATCAGGTAC+TGG 0.525311 3_2:-87043414 None:intergenic
GGAATTTGAATTTCATTACT+GGG 0.525618 3_2:-87043434 None:intergenic
GGATTGCATTAGGGTAAAGC+TGG 0.527585 3_2:-87044581 None:intergenic
TAATTGCAGGTTCATGGACC+TGG 0.530132 3_2:+87043193 None:intergenic
TGTGAAATCAAGTCATCTGA+TGG 0.530158 3_2:+87045836 Msa0434290:three_prime_UTR
GCTTGTCGAGACATTGTAGC+TGG 0.530844 3_2:-87044784 None:intergenic
ATTACATTTACATAGCATGA+TGG 0.533614 3_2:-87047473 None:intergenic
CTCGCAGAAACCATAGGGAC+AGG 0.538211 3_2:+87044715 Msa0434290:CDS
TCTGCATACTCATGTGGATA+AGG 0.542761 3_2:-87045297 None:intergenic
GGATCCTCGCAGAAACCATA+GGG 0.546951 3_2:+87044710 Msa0434290:CDS
GAGTCAATGAGGACAAAGCT+CGG 0.548398 3_2:+87046072 Msa0434290:three_prime_UTR
GGGATCCTCGCAGAAACCAT+AGG 0.548811 3_2:+87044709 Msa0434290:CDS
AAGCTTGCCAAATTGGGAAG+AGG 0.549390 3_2:+87046142 Msa0434290:three_prime_UTR
GCAAAATCTTATGCTACACT+GGG 0.550317 3_2:+87047145 Msa0434290:three_prime_UTR
ACCTCTCGATTTACATAGGA+AGG 0.552492 3_2:-87043244 None:intergenic
CTTGATTTCACAATTGCTGT+CGG 0.552840 3_2:-87045825 None:intergenic
GACTTTAGAAGTTCAGAATG+AGG 0.554195 3_2:+87045952 Msa0434290:three_prime_UTR
ATGTATGTATACTGGAAGCC+GGG 0.558185 3_2:+87045447 Msa0434290:CDS
ACAACAAAGTTCCCACCTCT+GGG 0.562793 3_2:-87047412 None:intergenic
GAGGTACTGGGAATGGGCAA+AGG 0.564355 3_2:+87047182 Msa0434290:three_prime_UTR
TCAATCTGCAGCGATTTCGT+TGG 0.567422 3_2:+87047591 Msa0434290:three_prime_UTR
AGCTTGCCAAATTGGGAAGA+GGG 0.568586 3_2:+87046143 Msa0434290:three_prime_UTR
AGAGGGAGTAAGAGGTCAAG+AGG 0.568590 3_2:+87045371 Msa0434290:CDS
GTAATGAAATTCAAATTCCA+AGG 0.569489 3_2:+87043438 Msa0434290:CDS
ATGATGGATGTATCAATCAC+AGG 0.570189 3_2:-87047457 None:intergenic
CATATTTGCGTACCCAGAGG+TGG 0.572136 3_2:+87047400 Msa0434290:three_prime_UTR
TGATTTCAGCCTATCATGAG+TGG 0.572409 3_2:-87045927 None:intergenic
TCTGATGGACTCTCAGGAAG+TGG 0.572545 3_2:+87045851 Msa0434290:three_prime_UTR
CAGATAGAGCGAGATACAAG+TGG 0.576975 3_2:+87045258 Msa0434290:intron
GGAGAGGTTGGGTAGAATCC+CGG 0.578285 3_2:+87045064 Msa0434290:CDS
ATGGGCTTGCAAAGAAAAGA+GGG 0.578749 3_2:+87045354 Msa0434290:CDS
TAAGAATTTGATCCGCCACT+CGG 0.580007 3_2:-87044230 None:intergenic
AAAGTGTCTATGTCCACTCC+AGG 0.581764 3_2:-87043211 None:intergenic
TAAACTTGTTCCAAATGTCG+AGG 0.582707 3_2:+87044251 Msa0434290:CDS
TATCACCTCTCGATTTACAT+AGG 0.583433 3_2:-87043248 None:intergenic
AGTCAATGAGGACAAAGCTC+GGG 0.588552 3_2:+87046073 Msa0434290:three_prime_UTR
TCTTAATGGTTGCCGAGTGG+CGG 0.589415 3_2:+87044218 Msa0434290:CDS
GACATAGACACTTTGTGCAT+CGG 0.589418 3_2:+87043220 Msa0434290:CDS
TCTGGATCCAGCTCTTCTGA+AGG 0.591270 3_2:+87045609 Msa0434290:CDS
TAGCCCAATTTACTCCTCCA+AGG 0.594120 3_2:-87044539 None:intergenic
TGAGTATCGAGTGTATTGAA+GGG 0.596741 3_2:+87045771 Msa0434290:three_prime_UTR
CTGGGGCTGTTGCTTTGCTG+AGG 0.597619 3_2:+87047163 Msa0434290:three_prime_UTR
AAACACACTCTAGCCTCTGT+GGG 0.600970 3_2:-87045706 None:intergenic
TACATTGATGAACAGCATGA+TGG 0.601254 3_2:+87047290 Msa0434290:three_prime_UTR
ACAAAGCTTGTAATTTCACA+AGG 0.601723 3_2:+87046192 Msa0434290:three_prime_UTR
TTTGTTGTTTGCTTGCGATG+TGG 0.601983 3_2:+87047427 Msa0434290:three_prime_UTR
GAAACACACTCTAGCCTCTG+TGG 0.608395 3_2:-87045707 None:intergenic
TATAAGTTGAAGATGAGGCT+AGG 0.609973 3_2:+87047000 Msa0434290:three_prime_UTR
TTGTAGCTGGAATTCATGCA+AGG 0.612790 3_2:-87044771 None:intergenic
TTCATCAACATCATACAGAA+CGG 0.616959 3_2:-87044181 None:intergenic
GCAGGTTCATGGACCTGGAG+TGG 0.617886 3_2:+87043198 None:intergenic
TAACTTCTTCCATTTCAGCA+AGG 0.618799 3_2:-87043380 None:intergenic
TTAGGGTCTATTCACAGTGG+CGG 0.623887 3_2:+87044628 Msa0434290:intron
TCTTCTGAAGGTCCATCAAG+AGG 0.626010 3_2:+87045621 Msa0434290:CDS
AGCCAGATAAACCAGAGAAG+CGG 0.626338 3_2:+87045672 Msa0434290:three_prime_UTR
ATGATGGAACAGTTCTGCTA+TGG 0.632180 3_2:+87044819 Msa0434290:CDS
GAGTGTATAAGTTGAAGATG+AGG 0.632977 3_2:+87046995 Msa0434290:three_prime_UTR
GTATAGACAGATGTCAGACT+CGG 0.634495 3_2:+87046972 Msa0434290:intron
GAGTATCGAGTGTATTGAAG+GGG 0.634925 3_2:+87045772 Msa0434290:three_prime_UTR
ACAAACGCACTCGAATGCCT+AGG 0.636758 3_2:+87045535 Msa0434290:CDS
AGATAGAGCGAGATACAAGT+GGG 0.636989 3_2:+87045259 Msa0434290:intron
GACGTGTCTGCATACTCATG+TGG 0.637311 3_2:-87045303 None:intergenic
GAGGGAGTAAGAGGTCAAGA+GGG 0.638723 3_2:+87045372 Msa0434290:CDS
TGAAGAGCTGATACAAACAA+TGG 0.640811 3_2:+87047219 Msa0434290:three_prime_UTR
TATAGACAGATGTCAGACTC+GGG 0.645587 3_2:+87046973 Msa0434290:intron
CAAAGCTTGTAATTTCACAA+GGG 0.646659 3_2:+87046193 Msa0434290:three_prime_UTR
GCCGCATGGTTTATATGCCT+AGG 0.651199 3_2:-87045552 None:intergenic
GCCCTATTGTATATAAAACA+GGG 0.655105 3_2:+87047335 Msa0434290:three_prime_UTR
CACCCAGAACCTCAATTGCG+AGG 0.656438 3_2:+87046247 Msa0434290:three_prime_UTR
GATGGAGATGCTTTAAAATG+CGG 0.658430 3_2:+87047308 Msa0434290:three_prime_UTR
TGTAGCTGGAATTCATGCAA+GGG 0.661048 3_2:-87044770 None:intergenic
ATATTTGCGTACCCAGAGGT+GGG 0.665579 3_2:+87047401 Msa0434290:three_prime_UTR
AAGTCTTAATGGTTGCCGAG+TGG 0.667186 3_2:+87044215 Msa0434290:CDS
CAGGACCTGGATATCTCAGA+CGG 0.670665 3_2:+87044156 Msa0434290:intron
ATTTCAGAATGGAGTCAATG+AGG 0.672391 3_2:+87046061 Msa0434290:intron
TCCTTCCTATGTAAATCGAG+AGG 0.672788 3_2:+87043243 Msa0434290:CDS
GGACAGCAGTTTGATATACG+TGG 0.673860 3_2:+87045393 Msa0434290:CDS
CCCTATTGTATATAAAACAG+GGG 0.680206 3_2:+87047336 Msa0434290:three_prime_UTR
AGTTGTACTAGTAAATTGGG+TGG 0.697247 3_2:+87045737 Msa0434290:three_prime_UTR
GCCTAGGCATATAAACCATG+CGG 0.702233 3_2:+87045551 Msa0434290:CDS
AGAGCTGATACAAACAATGG+AGG 0.705771 3_2:+87047222 Msa0434290:three_prime_UTR
AGTGGTACAATTACTGACGT+AGG 0.706187 3_2:+87045869 Msa0434290:three_prime_UTR
TCTTTAGGGTCTATTCACAG+TGG 0.718102 3_2:+87044625 Msa0434290:intron
TAACATATTTGCGTACCCAG+AGG 0.718156 3_2:+87047397 Msa0434290:three_prime_UTR
CTGTCCCTATGGTTTCTGCG+AGG 0.721142 3_2:-87044714 None:intergenic
TTGAGCTTAACAAATCACAG+TGG 0.747863 3_2:+87044947 Msa0434290:CDS
GGACATCTGTTAGCCCACAG+AGG 0.750930 3_2:+87045693 Msa0434290:three_prime_UTR
CAAAATCTTATGCTACACTG+GGG 0.787010 3_2:+87047146 Msa0434290:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATATGTTTTCATTAATT+TGG + chr3_2:87044276-87044295 Msa0434290:intron 10.0%
!! AAATTTAAAAATGAAACAAA+AGG - chr3_2:87046898-87046917 None:intergenic 10.0%
!!! TTAACAAATTCTTTTGTTTT+TGG + chr3_2:87045199-87045218 Msa0434290:intron 15.0%
!! AAATTATTATGTATGTATAC+TGG + chr3_2:87045439-87045458 Msa0434290:CDS 15.0%
!! CATATTATTAAATCAGAAAA+TGG + chr3_2:87046631-87046650 Msa0434290:intron 15.0%
!! AAATATAGCAGAACATATAA+AGG - chr3_2:87043549-87043568 None:intergenic 20.0%
!! TTATTAAAACATTTGTCTCT+TGG + chr3_2:87043568-87043587 Msa0434290:intron 20.0%
!! TATTAAAACATTTGTCTCTT+GGG + chr3_2:87043569-87043588 Msa0434290:intron 20.0%
!!! TTATATTTCTTTCCTGTTTT+TGG + chr3_2:87043710-87043729 Msa0434290:intron 20.0%
!! TTAAGTTTGATGCATTATAT+TGG + chr3_2:87043952-87043971 Msa0434290:intron 20.0%
!!! ATTGAGATGTTTAAAGTTTT+GGG + chr3_2:87044383-87044402 Msa0434290:intron 20.0%
!!! GAAAAGCATGTATTAATATA+CGG - chr3_2:87045225-87045244 None:intergenic 20.0%
!! TTAAAAATGAAACAAAAGGA+AGG - chr3_2:87046894-87046913 None:intergenic 20.0%
!!! ATTTTGTTTGATTACTTTGT+CGG + chr3_2:87046914-87046933 Msa0434290:intron 20.0%
!!! TTGTAAATACTGTTTTTCTT+TGG + chr3_2:87047072-87047091 Msa0434290:intron 20.0%
!!! AATGTTGAAACAGATATTTT+TGG + chr3_2:87047532-87047551 Msa0434290:three_prime_UTR 20.0%
! GGAATTTGAATTTCATTACT+GGG - chr3_2:87043437-87043456 None:intergenic 25.0%
! TGGAATTTGAATTTCATTAC+TGG - chr3_2:87043438-87043457 None:intergenic 25.0%
! GTAATGAAATTCAAATTCCA+AGG + chr3_2:87043438-87043457 Msa0434290:CDS 25.0%
! AAGAAAACTCAACTTTACAA+AGG - chr3_2:87043632-87043651 None:intergenic 25.0%
!! TTTGTAAAGTTGAGTTTTCT+TGG + chr3_2:87043631-87043650 Msa0434290:intron 25.0%
!! TTGTAAAGTTGAGTTTTCTT+GGG + chr3_2:87043632-87043651 Msa0434290:intron 25.0%
!!! TTTAGTTGTTTTATTGCTTG+AGG + chr3_2:87043828-87043847 Msa0434290:intron 25.0%
! AAAAATAAGGCATAAATGGA+TGG - chr3_2:87044017-87044036 None:intergenic 25.0%
! TAGGAAAAATAAGGCATAAA+TGG - chr3_2:87044021-87044040 None:intergenic 25.0%
!!! ATTTATGCCTTATTTTTCCT+AGG + chr3_2:87044020-87044039 Msa0434290:intron 25.0%
!! TTTTTCTCCTAGGAAAAATA+AGG - chr3_2:87044030-87044049 None:intergenic 25.0%
! GGGATTAAAATGAATAAATG+AGG - chr3_2:87044072-87044091 None:intergenic 25.0%
!! TAAGGGAAACTAGATTTTAA+GGG - chr3_2:87044092-87044111 None:intergenic 25.0%
!! TTAAGGGAAACTAGATTTTA+AGG - chr3_2:87044093-87044112 None:intergenic 25.0%
!!! AAAGTGAAGTCAAGTTTTAA+GGG - chr3_2:87044109-87044128 None:intergenic 25.0%
!! TAAAGTGAAGTCAAGTTTTA+AGG - chr3_2:87044110-87044129 None:intergenic 25.0%
!!! CATTGAGATGTTTAAAGTTT+TGG + chr3_2:87044382-87044401 Msa0434290:intron 25.0%
! AAAGAAATTAGTAAGGTTGT+AGG - chr3_2:87044447-87044466 None:intergenic 25.0%
! GGTTACTAAAGAAATTAGTA+AGG - chr3_2:87044454-87044473 None:intergenic 25.0%
! CTAATTTCTTTAGTAACCAA+TGG + chr3_2:87044456-87044475 Msa0434290:intron 25.0%
! TGATTAATACTTCTACTGTT+AGG + chr3_2:87044921-87044940 Msa0434290:intron 25.0%
! AATTTACTAGTACAACTTTC+AGG - chr3_2:87045734-87045753 None:intergenic 25.0%
! TGAAAGTTGTACTAGTAAAT+TGG + chr3_2:87045733-87045752 Msa0434290:three_prime_UTR 25.0%
! GAAAGTTGTACTAGTAAATT+GGG + chr3_2:87045734-87045753 Msa0434290:three_prime_UTR 25.0%
! GAAATTCCTTAATTAGAAGT+TGG + chr3_2:87046033-87046052 Msa0434290:intron 25.0%
!! TATTTGAGGACTTTTAGATT+AGG + chr3_2:87046280-87046299 Msa0434290:intron 25.0%
!! TTTTAGATTAGGAACAGTTA+TGG + chr3_2:87046291-87046310 Msa0434290:intron 25.0%
! ATGGAAGTGAAAAATAAACT+GGG + chr3_2:87046314-87046333 Msa0434290:intron 25.0%
!!! AGAGAGAGTATTTCAAAATA+TGG + chr3_2:87046413-87046432 Msa0434290:intron 25.0%
! ATATTAGATCAACTTTACCA+CGG - chr3_2:87046487-87046506 None:intergenic 25.0%
! GTGTTAACAAGTTATAACAA+GGG - chr3_2:87046607-87046626 None:intergenic 25.0%
! AGTGTTAACAAGTTATAACA+AGG - chr3_2:87046608-87046627 None:intergenic 25.0%
! ATGATCTTAGATTGTATATC+TGG + chr3_2:87046692-87046711 Msa0434290:intron 25.0%
! ATTATGAAATTCAATTGCCA+TGG - chr3_2:87046752-87046771 None:intergenic 25.0%
! AAATTAGAAAGAGCAAAGTT+AGG - chr3_2:87046943-87046962 None:intergenic 25.0%
!!! ATACTGTTTTTCTTTGGTTT+TGG + chr3_2:87047078-87047097 Msa0434290:intron 25.0%
! ATTACATTTACATAGCATGA+TGG - chr3_2:87047476-87047495 None:intergenic 25.0%
! ATTGAATTTGGAAGTTTAGA+TGG + chr3_2:87047559-87047578 Msa0434290:three_prime_UTR 25.0%
GCAAATCTATAGATATTCCT+TGG - chr3_2:87043458-87043477 None:intergenic 30.0%
! GTATGCAAGCATATCTATTT+TGG + chr3_2:87043479-87043498 Msa0434290:CDS 30.0%
ATAAGAACCAAACTTACTTC+TGG - chr3_2:87043510-87043529 None:intergenic 30.0%
GCAGAACATATAAAGGTAAA+AGG - chr3_2:87043542-87043561 None:intergenic 30.0%
! TGTAAAGTTGAGTTTTCTTG+GGG + chr3_2:87043633-87043652 Msa0434290:intron 30.0%
TGCTATATAGCATGTATAGT+GGG - chr3_2:87043775-87043794 None:intergenic 30.0%
ATGCTATATAGCATGTATAG+TGG - chr3_2:87043776-87043795 None:intergenic 30.0%
CTAGGAATTATAGAGAATGT+AGG + chr3_2:87043801-87043820 Msa0434290:intron 30.0%
GAATTATAGAGAATGTAGGA+AGG + chr3_2:87043805-87043824 Msa0434290:intron 30.0%
TCGCATAATACACATAAGTT+TGG + chr3_2:87043884-87043903 Msa0434290:intron 30.0%
! TTTGGTAAATGCATGTTTTG+AGG + chr3_2:87043902-87043921 Msa0434290:intron 30.0%
! AAGAAACATGTTTTTCTCCT+AGG - chr3_2:87044040-87044059 None:intergenic 30.0%
AGGAGAAAAACATGTTTCTT+TGG + chr3_2:87044040-87044059 Msa0434290:intron 30.0%
! TTTGAAATACACTTATCCAC+AGG + chr3_2:87044137-87044156 Msa0434290:intron 30.0%
TTCATCAACATCATACAGAA+CGG - chr3_2:87044184-87044203 None:intergenic 30.0%
CATATATTAACCTCGACATT+TGG - chr3_2:87044264-87044283 None:intergenic 30.0%
CTATCATTATGAAGGGTTAA+TGG - chr3_2:87044349-87044368 None:intergenic 30.0%
!! GAAAGTGCTATCATTATGAA+GGG - chr3_2:87044356-87044375 None:intergenic 30.0%
ATCTAGAAACCAACATACTA+GGG - chr3_2:87044605-87044624 None:intergenic 30.0%
AATCTAGAAACCAACATACT+AGG - chr3_2:87044606-87044625 None:intergenic 30.0%
!! TGTTGGTTTCTAGATTCTTT+AGG + chr3_2:87044610-87044629 Msa0434290:intron 30.0%
! GTTGGTTTCTAGATTCTTTA+GGG + chr3_2:87044611-87044630 Msa0434290:intron 30.0%
TAAGCCTCAAAAAAGACATA+TGG - chr3_2:87044988-87045007 None:intergenic 30.0%
!! ATGCTGATGATTTACTTTTG+TGG + chr3_2:87045043-87045062 Msa0434290:CDS 30.0%
ACATGAACTAAATTCAGATG+AGG - chr3_2:87045134-87045153 None:intergenic 30.0%
GAAACATAAATTTCCATTCC+CGG - chr3_2:87045468-87045487 None:intergenic 30.0%
TACAAAAAGCTTGCCAAATT+GGG + chr3_2:87046136-87046155 Msa0434290:three_prime_UTR 30.0%
ACAAAGCTTGTAATTTCACA+AGG + chr3_2:87046192-87046211 Msa0434290:three_prime_UTR 30.0%
CAAAGCTTGTAATTTCACAA+GGG + chr3_2:87046193-87046212 Msa0434290:three_prime_UTR 30.0%
GATGGAAGTGAAAAATAAAC+TGG + chr3_2:87046313-87046332 Msa0434290:intron 30.0%
!! GAGAGTATTTCAAAATATGG+TGG + chr3_2:87046416-87046435 Msa0434290:intron 30.0%
TAACAAGTTATAACAAGGGA+GGG - chr3_2:87046603-87046622 None:intergenic 30.0%
TTAACAAGTTATAACAAGGG+AGG - chr3_2:87046604-87046623 None:intergenic 30.0%
! TTTTCTCTTCCTATCTTGTT+GGG + chr3_2:87046662-87046681 Msa0434290:intron 30.0%
CAAATTATCTTGAAGCAAGA+GGG - chr3_2:87046718-87046737 None:intergenic 30.0%
AATTTGGCTATCAATTTCCA+TGG + chr3_2:87046732-87046751 Msa0434290:intron 30.0%
TTCATAATCAAGTTTCTGAC+CGG + chr3_2:87046764-87046783 Msa0434290:intron 30.0%
!!! ATTAAGGTTTTGGAGAGTTT+TGG + chr3_2:87047253-87047272 Msa0434290:three_prime_UTR 30.0%
GCCCTATTGTATATAAAACA+GGG + chr3_2:87047335-87047354 Msa0434290:three_prime_UTR 30.0%
! CCCCTGTTTTATATACAATA+GGG - chr3_2:87047339-87047358 None:intergenic 30.0%
CCCTATTGTATATAAAACAG+GGG + chr3_2:87047336-87047355 Msa0434290:three_prime_UTR 30.0%
! ATATAGTCTTTTCAGCTAAG+TGG + chr3_2:87047497-87047516 Msa0434290:three_prime_UTR 30.0%
!!! GTTGAAACAGATATTTTTGG+CGG + chr3_2:87047535-87047554 Msa0434290:three_prime_UTR 30.0%
TATCACCTCTCGATTTACAT+AGG - chr3_2:87043251-87043270 None:intergenic 35.0%
CCTCCATTTAGTAAAATCCT+CGG + chr3_2:87043291-87043310 Msa0434290:intron 35.0%
! ATGCCGAGGATTTTACTAAA+TGG - chr3_2:87043297-87043316 None:intergenic 35.0%
CTAAAATATAACTGATGCCG+AGG - chr3_2:87043311-87043330 None:intergenic 35.0%
TAACTTCTTCCATTTCAGCA+AGG - chr3_2:87043383-87043402 None:intergenic 35.0%
!! AAGTTTGGTTCTTATTCAGC+AGG + chr3_2:87043515-87043534 Msa0434290:intron 35.0%
!! AGTTTGGTTCTTATTCAGCA+GGG + chr3_2:87043516-87043535 Msa0434290:intron 35.0%
TCTCTTGGGTGAAGAATTTA+GGG + chr3_2:87043583-87043602 Msa0434290:intron 35.0%
AATTCAAGCATGCCAAAAAC+AGG - chr3_2:87043725-87043744 None:intergenic 35.0%
TGCTATATAGCATGTCTTCT+AGG + chr3_2:87043783-87043802 Msa0434290:intron 35.0%
GCAGCACACTAATCTAATAT+AGG - chr3_2:87043858-87043877 None:intergenic 35.0%
TATGTGTATTATGCGAACGT+TGG - chr3_2:87043880-87043899 None:intergenic 35.0%
CAAACTGTTCGAAGTCTTAA+TGG + chr3_2:87044204-87044223 Msa0434290:CDS 35.0%
! TAAACTTGTTCCAAATGTCG+AGG + chr3_2:87044251-87044270 Msa0434290:CDS 35.0%
!! CGAAAGTGCTATCATTATGA+AGG - chr3_2:87044357-87044376 None:intergenic 35.0%
AACATAAATGCTCATGCCAT+TGG - chr3_2:87044475-87044494 None:intergenic 35.0%
TCGAAATGAGGTAACAAAGA+TGG - chr3_2:87044499-87044518 None:intergenic 35.0%
TACCTCATTTCGATGTGTTT+AGG + chr3_2:87044506-87044525 Msa0434290:intron 35.0%
AACCTAAACACATCGAAATG+AGG - chr3_2:87044511-87044530 None:intergenic 35.0%
! TTTCGATGTGTTTAGGTTAC+TGG + chr3_2:87044513-87044532 Msa0434290:intron 35.0%
ATTCCTTGGAGGAGTAAATT+GGG + chr3_2:87044536-87044555 Msa0434290:CDS 35.0%
ACATACTAGGGATTGCATTA+GGG - chr3_2:87044593-87044612 None:intergenic 35.0%
AACATACTAGGGATTGCATT+AGG - chr3_2:87044594-87044613 None:intergenic 35.0%
TAATGCAATCCCTAGTATGT+TGG + chr3_2:87044593-87044612 Msa0434290:intron 35.0%
ACGAACTGCATTTACCTATA+TGG + chr3_2:87044688-87044707 Msa0434290:CDS 35.0%
CGAACTGCATTTACCTATAT+GGG + chr3_2:87044689-87044708 Msa0434290:CDS 35.0%
TTGAGCTTAACAAATCACAG+TGG + chr3_2:87044947-87044966 Msa0434290:CDS 35.0%
!!! TCAGCCATATGTCTTTTTTG+AGG + chr3_2:87044981-87045000 Msa0434290:CDS 35.0%
!! GATGATTTACTTTTGTGGAG+AGG + chr3_2:87045048-87045067 Msa0434290:CDS 35.0%
!! ATTTACTTTTGTGGAGAGGT+TGG + chr3_2:87045052-87045071 Msa0434290:CDS 35.0%
!! TTTACTTTTGTGGAGAGGTT+GGG + chr3_2:87045053-87045072 Msa0434290:CDS 35.0%
CATACAAAACTGTACCTTCA+AGG - chr3_2:87045103-87045122 None:intergenic 35.0%
!! TGAAGGTACAGTTTTGTATG+AGG + chr3_2:87045103-87045122 Msa0434290:intron 35.0%
TATGTATGTATACTGGAAGC+CGG + chr3_2:87045446-87045465 Msa0434290:CDS 35.0%
CATCTGGAAAAACAAATGCA+GGG - chr3_2:87045512-87045531 None:intergenic 35.0%
GCTTAACATCCATCATTTCA+GGG - chr3_2:87045655-87045674 None:intergenic 35.0%
AGTTGTACTAGTAAATTGGG+TGG + chr3_2:87045737-87045756 Msa0434290:three_prime_UTR 35.0%
ATACACTCGATACTCATTTG+AGG - chr3_2:87045767-87045786 None:intergenic 35.0%
!! ATGAGTATCGAGTGTATTGA+AGG + chr3_2:87045770-87045789 Msa0434290:three_prime_UTR 35.0%
!! TGAGTATCGAGTGTATTGAA+GGG + chr3_2:87045771-87045790 Msa0434290:three_prime_UTR 35.0%
CTTGATTTCACAATTGCTGT+CGG - chr3_2:87045828-87045847 None:intergenic 35.0%
TGTGAAATCAAGTCATCTGA+TGG + chr3_2:87045836-87045855 Msa0434290:three_prime_UTR 35.0%
! GACTTTAGAAGTTCAGAATG+AGG + chr3_2:87045952-87045971 Msa0434290:three_prime_UTR 35.0%
TGGACACCAACTTCTAATTA+AGG - chr3_2:87046042-87046061 None:intergenic 35.0%
!! TCATTGACTCCATTCTGAAA+TGG - chr3_2:87046062-87046081 None:intergenic 35.0%
ATTTCAGAATGGAGTCAATG+AGG + chr3_2:87046061-87046080 Msa0434290:intron 35.0%
!! TGACTTTTGTTTGCTTGGAA+AGG + chr3_2:87046099-87046118 Msa0434290:three_prime_UTR 35.0%
!! GACTTTTGTTTGCTTGGAAA+GGG + chr3_2:87046100-87046119 Msa0434290:three_prime_UTR 35.0%
CTACAAAAAGCTTGCCAAAT+TGG + chr3_2:87046135-87046154 Msa0434290:three_prime_UTR 35.0%
! GAGGTGAGTTTCTTTATTTG+AGG + chr3_2:87046266-87046285 Msa0434290:intron 35.0%
AGATTAGGAACAGTTATGGA+TGG + chr3_2:87046295-87046314 Msa0434290:intron 35.0%
AACAAGTTATAACAAGGGAG+GGG - chr3_2:87046602-87046621 None:intergenic 35.0%
AGATAGGAAGAGAAAAGGAA+CGG - chr3_2:87046658-87046677 None:intergenic 35.0%
CAACAAGATAGGAAGAGAAA+AGG - chr3_2:87046663-87046682 None:intergenic 35.0%
! CTTTTCTCTTCCTATCTTGT+TGG + chr3_2:87046661-87046680 Msa0434290:intron 35.0%
ATAGTAAGACCCAACAAGAT+AGG - chr3_2:87046674-87046693 None:intergenic 35.0%
CCAAATTATCTTGAAGCAAG+AGG - chr3_2:87046719-87046738 None:intergenic 35.0%
CCTCTTGCTTCAAGATAATT+TGG + chr3_2:87046716-87046735 Msa0434290:intron 35.0%
CTCTATACACAAAACAAGTC+AGG - chr3_2:87046855-87046874 None:intergenic 35.0%
!!! GACTTGTTTTGTGTATAGAG+AGG + chr3_2:87046855-87046874 Msa0434290:intron 35.0%
AATGAAACAAAAGGAAGGTC+TGG - chr3_2:87046889-87046908 None:intergenic 35.0%
! GAGTGTATAAGTTGAAGATG+AGG + chr3_2:87046995-87047014 Msa0434290:three_prime_UTR 35.0%
! TATAAGTTGAAGATGAGGCT+AGG + chr3_2:87047000-87047019 Msa0434290:three_prime_UTR 35.0%
! TTTTTGCAGAAGCTTGTGAA+AGG + chr3_2:87047029-87047048 Msa0434290:intron 35.0%
!!! TTCTTTGGTTTTGGCTTTGT+AGG + chr3_2:87047087-87047106 Msa0434290:intron 35.0%
! GCTTTGTAGGAGGATAATTT+TGG + chr3_2:87047100-87047119 Msa0434290:intron 35.0%
!!! TAATTTTGGAGTGCATCTCA+TGG + chr3_2:87047114-87047133 Msa0434290:three_prime_UTR 35.0%
TGCAAAATCTTATGCTACAC+TGG + chr3_2:87047144-87047163 Msa0434290:three_prime_UTR 35.0%
GCAAAATCTTATGCTACACT+GGG + chr3_2:87047145-87047164 Msa0434290:three_prime_UTR 35.0%
CAAAATCTTATGCTACACTG+GGG + chr3_2:87047146-87047165 Msa0434290:three_prime_UTR 35.0%
TGAAGAGCTGATACAAACAA+TGG + chr3_2:87047219-87047238 Msa0434290:three_prime_UTR 35.0%
AATGGAGGCTAATCAGATTA+AGG + chr3_2:87047237-87047256 Msa0434290:three_prime_UTR 35.0%
! GGCTAATCAGATTAAGGTTT+TGG + chr3_2:87047243-87047262 Msa0434290:three_prime_UTR 35.0%
TACATTGATGAACAGCATGA+TGG + chr3_2:87047290-87047309 Msa0434290:three_prime_UTR 35.0%
!! GATGGAGATGCTTTAAAATG+CGG + chr3_2:87047308-87047327 Msa0434290:three_prime_UTR 35.0%
CGCCCTATTGTATATAAAAC+AGG + chr3_2:87047334-87047353 Msa0434290:three_prime_UTR 35.0%
! GCCCCTGTTTTATATACAAT+AGG - chr3_2:87047340-87047359 None:intergenic 35.0%
!! ATGATGGATGTATCAATCAC+AGG - chr3_2:87047460-87047479 None:intergenic 35.0%
!!! ATTTTTGGCGGCATTGAATT+TGG + chr3_2:87047547-87047566 Msa0434290:three_prime_UTR 35.0%
GACATAGACACTTTGTGCAT+CGG + chr3_2:87043220-87043239 Msa0434290:CDS 40.0%
TCCTTCCTATGTAAATCGAG+AGG + chr3_2:87043243-87043262 Msa0434290:CDS 40.0%
ACCTCTCGATTTACATAGGA+AGG - chr3_2:87043247-87043266 None:intergenic 40.0%
! CCGAGGATTTTACTAAATGG+AGG - chr3_2:87043294-87043313 None:intergenic 40.0%
GTCTCTTGGGTGAAGAATTT+AGG + chr3_2:87043582-87043601 Msa0434290:intron 40.0%
! TTGAGTTTTCTTGGGGTGTA+TGG + chr3_2:87043640-87043659 Msa0434290:intron 40.0%
CAGTACACAGAATGAAGACA+TGG - chr3_2:87043678-87043697 None:intergenic 40.0%
TAAGAATTTGATCCGCCACT+CGG - chr3_2:87044233-87044252 None:intergenic 40.0%
!!! AAGTTTTGGGCTAAAAGACG+TGG + chr3_2:87044396-87044415 Msa0434290:intron 40.0%
! GTTTAGGTTACTGGATTCCT+TGG + chr3_2:87044522-87044541 Msa0434290:intron 40.0%
GATTCCTTGGAGGAGTAAAT+TGG + chr3_2:87044535-87044554 Msa0434290:CDS 40.0%
!! TCTTTAGGGTCTATTCACAG+TGG + chr3_2:87044625-87044644 Msa0434290:intron 40.0%
CTATAGGGCATAGCATTACA+GGG - chr3_2:87044662-87044681 None:intergenic 40.0%
TCTATAGGGCATAGCATTAC+AGG - chr3_2:87044663-87044682 None:intergenic 40.0%
GCAGTTCGTTCTCTTCTATA+GGG - chr3_2:87044677-87044696 None:intergenic 40.0%
TGCAGTTCGTTCTCTTCTAT+AGG - chr3_2:87044678-87044697 None:intergenic 40.0%
TAATGTGATACCTGTCCCTA+TGG - chr3_2:87044728-87044747 None:intergenic 40.0%
GGGTATGCAGGAGTAATTAT+TGG - chr3_2:87044753-87044772 None:intergenic 40.0%
TGTAGCTGGAATTCATGCAA+GGG - chr3_2:87044773-87044792 None:intergenic 40.0%
TTGTAGCTGGAATTCATGCA+AGG - chr3_2:87044774-87044793 None:intergenic 40.0%
AAGCACTCTTCGTGTTATGA+TGG + chr3_2:87044803-87044822 Msa0434290:CDS 40.0%
! ATGATGGAACAGTTCTGCTA+TGG + chr3_2:87044819-87044838 Msa0434290:CDS 40.0%
TAGTTCATGTCTCATGTCTG+CGG + chr3_2:87045144-87045163 Msa0434290:intron 40.0%
AGATAGAGCGAGATACAAGT+GGG + chr3_2:87045259-87045278 Msa0434290:intron 40.0%
TCTGCATACTCATGTGGATA+AGG - chr3_2:87045300-87045319 None:intergenic 40.0%
AAAAATGCAGAATGCGCACA+AGG - chr3_2:87045333-87045352 None:intergenic 40.0%
! TGCGCATTCTGCATTTTTCA+TGG + chr3_2:87045335-87045354 Msa0434290:CDS 40.0%
! GCGCATTCTGCATTTTTCAT+GGG + chr3_2:87045336-87045355 Msa0434290:CDS 40.0%
ATGGGCTTGCAAAGAAAAGA+GGG + chr3_2:87045354-87045373 Msa0434290:CDS 40.0%
CAAAGAAAAGAGGGAGTAAG+AGG + chr3_2:87045363-87045382 Msa0434290:CDS 40.0%
ATGTATGTATACTGGAAGCC+GGG + chr3_2:87045447-87045466 Msa0434290:CDS 40.0%
CCATCTGGAAAAACAAATGC+AGG - chr3_2:87045513-87045532 None:intergenic 40.0%
!! CCTGCATTTGTTTTTCCAGA+TGG + chr3_2:87045510-87045529 Msa0434290:CDS 40.0%
GAAGAAGAACCCTGAAATGA+TGG + chr3_2:87045643-87045662 Msa0434290:CDS 40.0%
GGCTTAACATCCATCATTTC+AGG - chr3_2:87045656-87045675 None:intergenic 40.0%
!! GAGTATCGAGTGTATTGAAG+GGG + chr3_2:87045772-87045791 Msa0434290:three_prime_UTR 40.0%
AGTGGTACAATTACTGACGT+AGG + chr3_2:87045869-87045888 Msa0434290:three_prime_UTR 40.0%
!! TTGTTGACTCCACTCATGAT+AGG + chr3_2:87045918-87045937 Msa0434290:three_prime_UTR 40.0%
TGATTTCAGCCTATCATGAG+TGG - chr3_2:87045930-87045949 None:intergenic 40.0%
CTCATGATAGGCTGAAATCA+AGG + chr3_2:87045930-87045949 Msa0434290:three_prime_UTR 40.0%
TGAACCAAACAACTTCCGAA+GGG - chr3_2:87046010-87046029 None:intergenic 40.0%
ATGAACCAAACAACTTCCGA+AGG - chr3_2:87046011-87046030 None:intergenic 40.0%
! AGTTGGTGTCCATTTCAGAA+TGG + chr3_2:87046050-87046069 Msa0434290:intron 40.0%
!! GGACATGACTTTTGTTTGCT+TGG + chr3_2:87046094-87046113 Msa0434290:three_prime_UTR 40.0%
TTTCACAAGGGCAGAATGTA+CGG + chr3_2:87046205-87046224 Msa0434290:three_prime_UTR 40.0%
TCTGAGAGATAGTGAGAGTA+AGG + chr3_2:87046340-87046359 Msa0434290:intron 40.0%
CTGAGAGATAGTGAGAGTAA+GGG + chr3_2:87046341-87046360 Msa0434290:intron 40.0%
CTCTCTATTCAGAACTGATC+AGG - chr3_2:87046399-87046418 None:intergenic 40.0%
TGGAAACATAGCACGTATAG+TGG - chr3_2:87046815-87046834 None:intergenic 40.0%
AGGTTGTTAAGCACAGTTAC+TGG - chr3_2:87046835-87046854 None:intergenic 40.0%
GTATAGACAGATGTCAGACT+CGG + chr3_2:87046972-87046991 Msa0434290:intron 40.0%
TATAGACAGATGTCAGACTC+GGG + chr3_2:87046973-87046992 Msa0434290:intron 40.0%
!!! TTTGGTTTTGGCTTTGTAGG+AGG + chr3_2:87047090-87047109 Msa0434290:intron 40.0%
AGAGCTGATACAAACAATGG+AGG + chr3_2:87047222-87047241 Msa0434290:three_prime_UTR 40.0%
!!! GGTTTTGGAGAGTTTTGGAA+TGG + chr3_2:87047258-87047277 Msa0434290:three_prime_UTR 40.0%
TAACATATTTGCGTACCCAG+AGG + chr3_2:87047397-87047416 Msa0434290:three_prime_UTR 40.0%
!! TTTGTTGTTTGCTTGCGATG+TGG + chr3_2:87047427-87047446 Msa0434290:three_prime_UTR 40.0%
! AAAGTGTCTATGTCCACTCC+AGG - chr3_2:87043214-87043233 None:intergenic 45.0%
GCACAACATCCTTGCTGAAA+TGG + chr3_2:87043371-87043390 Msa0434290:CDS 45.0%
ATTACTGGGACATGTGCATC+AGG - chr3_2:87043423-87043442 None:intergenic 45.0%
GGTTGTGCCAGAAGTAAGTT+TGG + chr3_2:87043500-87043519 Msa0434290:intron 45.0%
TGGCATAGCGGTAACAGATA+TGG - chr3_2:87043997-87044016 None:intergenic 45.0%
GGCATAAATGGATGGCATAG+CGG - chr3_2:87044009-87044028 None:intergenic 45.0%
ATACACTTATCCACAGGACC+TGG + chr3_2:87044143-87044162 Msa0434290:intron 45.0%
AAGTCTTAATGGTTGCCGAG+TGG + chr3_2:87044215-87044234 Msa0434290:CDS 45.0%
TAGGTTACTGGATTCCTTGG+AGG + chr3_2:87044525-87044544 Msa0434290:intron 45.0%
TAGCCCAATTTACTCCTCCA+AGG - chr3_2:87044542-87044561 None:intergenic 45.0%
GGATTGCATTAGGGTAAAGC+TGG - chr3_2:87044584-87044603 None:intergenic 45.0%
TTAGGGTCTATTCACAGTGG+CGG + chr3_2:87044628-87044647 Msa0434290:intron 45.0%
TTTCTGCGAGGATCCCATAT+AGG - chr3_2:87044705-87044724 None:intergenic 45.0%
! GAATTCATGCAAGGGTATGC+AGG - chr3_2:87044765-87044784 None:intergenic 45.0%
! TCAAGGTTAGCTGTCTTAGC+CGG - chr3_2:87045086-87045105 None:intergenic 45.0%
GCTAAGACAGCTAACCTTGA+AGG + chr3_2:87045086-87045105 Msa0434290:CDS 45.0%
CAGATAGAGCGAGATACAAG+TGG + chr3_2:87045258-87045277 Msa0434290:intron 45.0%
CATGGGCTTGCAAAGAAAAG+AGG + chr3_2:87045353-87045372 Msa0434290:CDS 45.0%
GGACAGCAGTTTGATATACG+TGG + chr3_2:87045393-87045412 Msa0434290:CDS 45.0%
GCCTAGGCATATAAACCATG+CGG + chr3_2:87045551-87045570 Msa0434290:CDS 45.0%
AAACCATGCGGCTGAGAAAA+TGG + chr3_2:87045563-87045582 Msa0434290:CDS 45.0%
AACCATGCGGCTGAGAAAAT+GGG + chr3_2:87045564-87045583 Msa0434290:CDS 45.0%
GATACGACAAAGTGCAACTC+TGG + chr3_2:87045591-87045610 Msa0434290:CDS 45.0%
! TCTTCTGAAGGTCCATCAAG+AGG + chr3_2:87045621-87045640 Msa0434290:CDS 45.0%
AGGGTTCTTCTTCCTCTTGA+TGG - chr3_2:87045636-87045655 None:intergenic 45.0%
AGCCAGATAAACCAGAGAAG+CGG + chr3_2:87045672-87045691 Msa0434290:three_prime_UTR 45.0%
AAACACACTCTAGCCTCTGT+GGG - chr3_2:87045709-87045728 None:intergenic 45.0%
TCGAGTGTATTGAAGGGGTT+AGG + chr3_2:87045777-87045796 Msa0434290:three_prime_UTR 45.0%
ATTGAAGGGGTTAGGCTAGA+TGG + chr3_2:87045785-87045804 Msa0434290:three_prime_UTR 45.0%
!! AAGTCATCTGATGGACTCTC+AGG + chr3_2:87045845-87045864 Msa0434290:three_prime_UTR 45.0%
TAAGAAGCCTGCTGAATCAG+CGG + chr3_2:87045975-87045994 Msa0434290:intron 45.0%
GAGTCAATGAGGACAAAGCT+CGG + chr3_2:87046072-87046091 Msa0434290:three_prime_UTR 45.0%
AGTCAATGAGGACAAAGCTC+GGG + chr3_2:87046073-87046092 Msa0434290:three_prime_UTR 45.0%
AAGCTTGCCAAATTGGGAAG+AGG + chr3_2:87046142-87046161 Msa0434290:three_prime_UTR 45.0%
AGCTTGCCAAATTGGGAAGA+GGG + chr3_2:87046143-87046162 Msa0434290:three_prime_UTR 45.0%
AGAAACTCACCTCGCAATTG+AGG - chr3_2:87046259-87046278 None:intergenic 45.0%
AGAGTAAGGGAACTTTGCAG+AGG + chr3_2:87046354-87046373 Msa0434290:intron 45.0%
GAGTAAGGGAACTTTGCAGA+GGG + chr3_2:87046355-87046374 Msa0434290:intron 45.0%
! TTGCAGAGGGTGATGTTTTG+TGG + chr3_2:87046368-87046387 Msa0434290:intron 45.0%
ATGGTGGCTGAAGAAGTTGA+AGG + chr3_2:87046432-87046451 Msa0434290:intron 45.0%
! TAACCTCTCTGTTTTCTCCG+TGG + chr3_2:87046467-87046486 Msa0434290:intron 45.0%
TTACCACGGAGAAAACAGAG+AGG - chr3_2:87046473-87046492 None:intergenic 45.0%
GTTTCTGACCGGTGAATATG+TGG + chr3_2:87046775-87046794 Msa0434290:intron 45.0%
ACAAAAGGAAGGTCTGGTCT+CGG - chr3_2:87046883-87046902 None:intergenic 45.0%
!! TGTTGCTTTGCTGAGGTACT+GGG + chr3_2:87047170-87047189 Msa0434290:three_prime_UTR 45.0%
!! TTTGCTGAGGTACTGGGAAT+GGG + chr3_2:87047176-87047195 Msa0434290:three_prime_UTR 45.0%
ATATTTGCGTACCCAGAGGT+GGG + chr3_2:87047401-87047420 Msa0434290:three_prime_UTR 45.0%
ACAACAAAGTTCCCACCTCT+GGG - chr3_2:87047415-87047434 None:intergenic 45.0%
AACAACAAAGTTCCCACCTC+TGG - chr3_2:87047416-87047435 None:intergenic 45.0%
TCAATCTGCAGCGATTTCGT+TGG + chr3_2:87047591-87047610 Msa0434290:three_prime_UTR 45.0%
GAGAGGTGATATACTGCAGC+TGG + chr3_2:87043260-87043279 Msa0434290:intron 50.0%
!! CATGTATAGTGGGTGTCGAG+GGG - chr3_2:87043765-87043784 None:intergenic 50.0%
!! GCATGTATAGTGGGTGTCGA+GGG - chr3_2:87043766-87043785 None:intergenic 50.0%
!! AGCATGTATAGTGGGTGTCG+AGG - chr3_2:87043767-87043786 None:intergenic 50.0%
! TCTGAGATATCCAGGTCCTG+TGG - chr3_2:87044156-87044175 None:intergenic 50.0%
CAGGACCTGGATATCTCAGA+CGG + chr3_2:87044156-87044175 Msa0434290:intron 50.0%
TCTTAATGGTTGCCGAGTGG+CGG + chr3_2:87044218-87044237 Msa0434290:CDS 50.0%
GGGCATAGCATTACAGGGTT+TGG - chr3_2:87044657-87044676 None:intergenic 50.0%
GGATCCTCGCAGAAACCATA+GGG + chr3_2:87044710-87044729 Msa0434290:CDS 50.0%
GCTTGTCGAGACATTGTAGC+TGG - chr3_2:87044787-87044806 None:intergenic 50.0%
! CAAGGTTAGCTGTCTTAGCC+GGG - chr3_2:87045085-87045104 None:intergenic 50.0%
GACGTGTCTGCATACTCATG+TGG - chr3_2:87045306-87045325 None:intergenic 50.0%
AGAGGGAGTAAGAGGTCAAG+AGG + chr3_2:87045371-87045390 Msa0434290:CDS 50.0%
GAGGGAGTAAGAGGTCAAGA+GGG + chr3_2:87045372-87045391 Msa0434290:CDS 50.0%
TGTATACTGGAAGCCGGGAA+TGG + chr3_2:87045452-87045471 Msa0434290:CDS 50.0%
CGAGTGCGTTTGTAACCATC+TGG - chr3_2:87045528-87045547 None:intergenic 50.0%
ACAAACGCACTCGAATGCCT+AGG + chr3_2:87045535-87045554 Msa0434290:CDS 50.0%
GCCGCATGGTTTATATGCCT+AGG - chr3_2:87045555-87045574 None:intergenic 50.0%
TCTGGATCCAGCTCTTCTGA+AGG + chr3_2:87045609-87045628 Msa0434290:CDS 50.0%
! TGATGGACCTTCAGAAGAGC+TGG - chr3_2:87045619-87045638 None:intergenic 50.0%
! GTCCGCTTCTCTGGTTTATC+TGG - chr3_2:87045677-87045696 None:intergenic 50.0%
CTAACAGATGTCCGCTTCTC+TGG - chr3_2:87045686-87045705 None:intergenic 50.0%
GAAACACACTCTAGCCTCTG+TGG - chr3_2:87045710-87045729 None:intergenic 50.0%
!! TCTGATGGACTCTCAGGAAG+TGG + chr3_2:87045851-87045870 Msa0434290:three_prime_UTR 50.0%
AAGAAGCCTGCTGAATCAGC+GGG + chr3_2:87045976-87045995 Msa0434290:intron 50.0%
CCAAACAACTTCCGAAGGGA+AGG - chr3_2:87046006-87046025 None:intergenic 50.0%
CCTTCCCTTCGGAAGTTGTT+TGG + chr3_2:87046003-87046022 Msa0434290:intron 50.0%
ACAGCACCCTCTTCCCAATT+TGG - chr3_2:87046152-87046171 None:intergenic 50.0%
CACCTCGCAATTGAGGTTCT+GGG - chr3_2:87046252-87046271 None:intergenic 50.0%
TCACCTCGCAATTGAGGTTC+TGG - chr3_2:87046253-87046272 None:intergenic 50.0%
ACCTGCGACCACATATTCAC+CGG - chr3_2:87046786-87046805 None:intergenic 50.0%
!! CTGTTGCTTTGCTGAGGTAC+TGG + chr3_2:87047169-87047188 Msa0434290:three_prime_UTR 50.0%
!! CTTTGCTGAGGTACTGGGAA+TGG + chr3_2:87047175-87047194 Msa0434290:three_prime_UTR 50.0%
CATATTTGCGTACCCAGAGG+TGG + chr3_2:87047400-87047419 Msa0434290:three_prime_UTR 50.0%
GTTTGCTTGCGATGTGGATG+TGG + chr3_2:87047433-87047452 Msa0434290:three_prime_UTR 50.0%
GGGACATGTGCATCAGGTAC+TGG - chr3_2:87043417-87043436 None:intergenic 55.0%
! CGGAACCGTCTGAGATATCC+AGG - chr3_2:87044164-87044183 None:intergenic 55.0%
GGGATCCTCGCAGAAACCAT+AGG + chr3_2:87044709-87044728 Msa0434290:CDS 55.0%
CTGTCCCTATGGTTTCTGCG+AGG - chr3_2:87044717-87044736 None:intergenic 55.0%
CTCGCAGAAACCATAGGGAC+AGG + chr3_2:87044715-87044734 Msa0434290:CDS 55.0%
GGAGAGGTTGGGTAGAATCC+CGG + chr3_2:87045064-87045083 Msa0434290:CDS 55.0%
TGCAGAATGCGCACAAGGCT+TGG - chr3_2:87045328-87045347 None:intergenic 55.0%
! CACCCATTTTCTCAGCCGCA+TGG - chr3_2:87045569-87045588 None:intergenic 55.0%
GGACATCTGTTAGCCCACAG+AGG + chr3_2:87045693-87045712 Msa0434290:three_prime_UTR 55.0%
!! AGGTTCTGGGTGCTGGCAAT+TGG - chr3_2:87046239-87046258 None:intergenic 55.0%
!! GCAATTGAGGTTCTGGGTGC+TGG - chr3_2:87046246-87046265 None:intergenic 55.0%
CACCCAGAACCTCAATTGCG+AGG + chr3_2:87046247-87046266 Msa0434290:three_prime_UTR 55.0%
ACCGGTGAATATGTGGTCGC+AGG + chr3_2:87046782-87046801 Msa0434290:intron 55.0%
!! GAGGTACTGGGAATGGGCAA+AGG + chr3_2:87047182-87047201 Msa0434290:three_prime_UTR 55.0%
GGGTCTATTCACAGTGGCGG+TGG + chr3_2:87044631-87044650 Msa0434290:intron 60.0%
!! GGTTCTCCCGCTGATTCAGC+AGG - chr3_2:87045985-87046004 None:intergenic 60.0%
CAGCGGGAGAACCTTCCCTT+CGG + chr3_2:87045992-87046011 Msa0434290:intron 60.0%
!! CTGGGGCTGTTGCTTTGCTG+AGG + chr3_2:87047163-87047182 Msa0434290:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 87043202 87047648 87043202 ID=Msa0434290;Name=Msa0434290
chr3_2 mRNA 87043202 87047648 87043202 ID=Msa0434290-mRNA-1;Parent=Msa0434290;Name=Msa0434290-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.77|0.7|1|0.77|0.6|10|1096|404
chr3_2 exon 87043202 87043264 87043202 ID=Msa0434290-mRNA-1:exon:25307;Parent=Msa0434290-mRNA-1
chr3_2 exon 87043351 87043512 87043351 ID=Msa0434290-mRNA-1:exon:25308;Parent=Msa0434290-mRNA-1
chr3_2 exon 87044159 87044272 87044159 ID=Msa0434290-mRNA-1:exon:25309;Parent=Msa0434290-mRNA-1
chr3_2 exon 87044528 87044610 87044528 ID=Msa0434290-mRNA-1:exon:25310;Parent=Msa0434290-mRNA-1
chr3_2 exon 87044632 87044857 87044632 ID=Msa0434290-mRNA-1:exon:25311;Parent=Msa0434290-mRNA-1
chr3_2 exon 87044943 87045107 87044943 ID=Msa0434290-mRNA-1:exon:25312;Parent=Msa0434290-mRNA-1
chr3_2 exon 87045261 87045973 87045261 ID=Msa0434290-mRNA-1:exon:25313;Parent=Msa0434290-mRNA-1
chr3_2 exon 87046068 87046268 87046068 ID=Msa0434290-mRNA-1:exon:25314;Parent=Msa0434290-mRNA-1
chr3_2 exon 87046978 87047021 87046978 ID=Msa0434290-mRNA-1:exon:25315;Parent=Msa0434290-mRNA-1
chr3_2 exon 87047109 87047648 87047109 ID=Msa0434290-mRNA-1:exon:25316;Parent=Msa0434290-mRNA-1
chr3_2 CDS 87043202 87043264 87043202 ID=Msa0434290-mRNA-1:cds;Parent=Msa0434290-mRNA-1
chr3_2 CDS 87043351 87043512 87043351 ID=Msa0434290-mRNA-1:cds;Parent=Msa0434290-mRNA-1
chr3_2 CDS 87044159 87044272 87044159 ID=Msa0434290-mRNA-1:cds;Parent=Msa0434290-mRNA-1
chr3_2 CDS 87044528 87044610 87044528 ID=Msa0434290-mRNA-1:cds;Parent=Msa0434290-mRNA-1
chr3_2 CDS 87044632 87044857 87044632 ID=Msa0434290-mRNA-1:cds;Parent=Msa0434290-mRNA-1
chr3_2 CDS 87044943 87045107 87044943 ID=Msa0434290-mRNA-1:cds;Parent=Msa0434290-mRNA-1
chr3_2 CDS 87045261 87045662 87045261 ID=Msa0434290-mRNA-1:cds;Parent=Msa0434290-mRNA-1
chr3_2 three_prime_UTR 87045663 87045973 87045663 ID=Msa0434290-mRNA-1:three_prime_utr;Parent=Msa0434290-mRNA-1
chr3_2 three_prime_UTR 87046068 87046268 87046068 ID=Msa0434290-mRNA-1:three_prime_utr;Parent=Msa0434290-mRNA-1
chr3_2 three_prime_UTR 87046978 87047021 87046978 ID=Msa0434290-mRNA-1:three_prime_utr;Parent=Msa0434290-mRNA-1
chr3_2 three_prime_UTR 87047109 87047648 87047109 ID=Msa0434290-mRNA-1:three_prime_utr;Parent=Msa0434290-mRNA-1
Gene Sequence

>Msa0434290

GTTCATGGACCTGGAGTGGACATAGACACTTTGTGCATCGGTCCTTCCTATGTAAATCGAGAGCAAGACTTCTTCATCATTTTGCACAACATCCTTGCTGAAATGGAAGAAGTTACTGAACTTCAACCAGTACCTGATGCACATGTCCCAGTAATGAAATTCAAATTCCAAGGAATATCTATAGATTTGCTGTATGCAAGCATATCTATTTTGGTTGTGCCAGAAGACCTGGATATCTCAGACGGTTCCGTTCTGTATGATGTTGATGAACAAACTGTTCGAAGTCTTAATGGTTGCCGAGTGGCGGATCAAATTCTTAAACTTGTTCCAAATGTCGAGGTTACTGGATTCCTTGGAGGAGTAAATTGGGCTATTTTAGTTGCTCGAATTTGCCAGCTTTACCCTAATGCAATCCCTAGTATGGTCTATTCACAGTGGCGGTGGCCAAACCCTGTAATGCTATGCCCTATAGAAGAGAACGAACTGCATTTACCTATATGGGATCCTCGCAGAAACCATAGGGACAGGTATCACATTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCCAGCTACAATGTCTCGACAAGCACTCTTCGTGTTATGATGGAACAGTTCTGCTATGGCAACAAGATTTGTAACGAAATTGAGCTTAACAAATCACAGTGGAGTGCACTTTTTCAGCCATATGTCTTTTTTGAGGCTTACAAAAACTATTTACAAGTAGACATCATTGCATTAGATGCTGATGATTTACTTTTGTGGAGAGGTTGGGTAGAATCCCGGCTAAGACAGCTAACCTTGAAGATAGAGCGAGATACAAGTGGGATGCTGCAGTGTCATCCTTATCCACATGAGTATGCAGACACGTCCAAGCCTTGTGCGCATTCTGCATTTTTCATGGGCTTGCAAAGAAAAGAGGGAGTAAGAGGTCAAGAGGGACAGCAGTTTGATATACGTGGAACAGTTGATGAGTTCAGACGAGAAATTATTATGTATGTATACTGGAAGCCGGGAATGGAAATTTATGTTTCTCATGTTCGTCGAAAGCAGCTCCCTGCATTTGTTTTTCCAGATGGTTACAAACGCACTCGAATGCCTAGGCATATAAACCATGCGGCTGAGAAAATGGGTGATGATACGACAAAGTGCAACTCTGGATCCAGCTCTTCTGAAGGTCCATCAAGAGGAAGAAGAACCCTGAAATGA
Protein sequence

>Msa0434290

VHGPGVDIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISILVVPEDLDISDGSVLYDVDEQTVRSLNGCRVADQILKLVPNVEVTGFLGGVNWAILVARICQLYPNAIPSMVYSQWRWPNPVMLCPIEENELHLPIWDPRRNHRDRYHIMPIITPAYPCMNSSYNVSTSTLRVMMEQFCYGNKICNEIELNKSQWSALFQPYVFFEAYKNYLQVDIIALDADDLLLWRGWVESRLRQLTLKIERDTSGMLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRREIIMYVYWKPGMEIYVSHVRRKQLPAFVFPDGYKRTRMPRHINHAAEKMGDDTTKCNSGSSSSEGPSRGRRTLK*