AlfalfaGEDB | Msa1069910

M. sativa cultivar zhongmu-4 / Msa1069910

KEGG: K00928
GO: GO:0003674 GO:0003824 GO:0004072 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016774 GO:0019202 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00696.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069910	XP_003624490.2	97.666	557	13	0	1	557	1	557	0.0	1117

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069910	sp\|Q9LYU8\|AK1_ARATH	81.276	486	90	1	72	556	80	565	0.0	791

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069910	G7KX84	97.666	557	13	0	1	557	1	557	0.0	1117

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0222920	Msa1069910	0.811747	5.998538e-51	-8.615850e-47
Msa1069910	Msa1157690	0.821487	3.933104e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069910	MtrunA17_Chr7g0252051	97.666	557	13	0	1	557	1	557	0.0	1117
Msa1069910	MtrunA17_Chr6g0461951	80.747	509	91	2	51	553	47	554	0.0	822
Msa1069910	MtrunA17_Chr3g0121961	28.216	482	300	12	81	534	79	542	7.74e-50	184
Msa1069910	MtrunA17_Chr8g0377971	25.331	529	372	11	21	534	32	552	1.93e-49	183

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069910	AT5G13280.1	81.276	486	90	1	72	556	80	565	0.0	791
Msa1069910	AT3G02020.1	75.150	499	117	2	46	541	55	549	0.0	756
Msa1069910	AT5G14060.1	79.957	464	91	1	74	535	78	541	0.0	753
Msa1069910	AT5G14060.2	79.957	464	91	1	74	535	78	541	0.0	753
Msa1069910	AT5G14060.3	80.637	377	73	0	74	450	78	454	0.0	631
Msa1069910	AT4G19710.1	27.140	479	307	11	81	534	91	552	1.58e-48	181
Msa1069910	AT4G19710.2	27.140	479	307	11	81	534	91	552	2.70e-48	181
Msa1069910	AT1G31230.1	27.593	482	301	12	81	534	86	547	7.50e-48	179

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Find 130 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACCAGTAAAAGTTTGT+TGG	0.449301	7_2:-65763611	None:intergenic
AACTGATGACTTCACAAATG+CGG	0.637078	7_2:+65765747	Msa1069910:CDS
AAGCACCCGCATGCTTGGTG+CGG	0.646180	7_2:+65766866	Msa1069910:CDS
AAGGACAACATTGGGTAGAG+GGG	0.613013	7_2:+65766015	Msa1069910:CDS
AAGGGATCCAAGAACTTGAA+AGG	0.580115	7_2:-65767985	None:intergenic
AATGAATCCATACCTGAAAA+TGG	0.329910	7_2:+65768787	Msa1069910:CDS
AATGCGAGGGAAAGTGATTT+TGG	0.193404	7_2:+65763427	Msa1069910:CDS
AATGTTCAAATGATTTCTCA+GGG	0.575084	7_2:+65768014	Msa1069910:CDS
AATTGGAGCAACTTCTGAAG+GGG	0.602670	7_2:+65765439	Msa1069910:CDS
ACAACAATTGGGAAAGCACT+AGG	0.567209	7_2:+65766055	Msa1069910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGACAAAATTGGAGAGATTA+AGG	-	chr7_2:65763149-65763168	None:intergenic	30.0%
ATAGCAGAAAGAACAATGAT+AGG	-	chr7_2:65763580-65763599	None:intergenic	30.0%
TATCATTGTTCTTTCTGCTA+TGG	+	chr7_2:65763579-65763598	Msa1069910:CDS	30.0%
ATCATTGTTCTTTCTGCTAT+GGG	+	chr7_2:65763580-65763599	Msa1069910:CDS	30.0%
TCCAACATAGACAAATATCA+CGG	+	chr7_2:65764273-65764292	Msa1069910:intron	30.0%
AGCATATATCCTATGATTTG+GGG	+	chr7_2:65764324-65764343	Msa1069910:intron	30.0%
ATATAAAAGACTTGCATCTC+AGG	+	chr7_2:65764623-65764642	Msa1069910:CDS	30.0%
CTGAAGAGCTTACTTTAATA+TGG	+	chr7_2:65765074-65765093	Msa1069910:intron	30.0%
ATTGGGTTAAATGATGAAAC+TGG	+	chr7_2:65765211-65765230	Msa1069910:intron	30.0%
GAAGATGTTGGATATTGTAA+TGG	+	chr7_2:65765249-65765268	Msa1069910:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	65763057	65769309	65763057	ID=Msa1069910;Name=Msa1069910
chr7_2	mRNA	65763057	65769309	65763057	ID=Msa1069910-mRNA-1;Parent=Msa1069910;Name=Msa1069910-mRNA-1;_AED=0.13;_eAED=0.13;_QI=145\|1\|1\|1\|0.85\|0.73\|15\|294\|557
chr7_2	exon	65763057	65763135	65763057	ID=Msa1069910-mRNA-1:exon:13869;Parent=Msa1069910-mRNA-1
chr7_2	exon	65763184	65763627	65763184	ID=Msa1069910-mRNA-1:exon:13870;Parent=Msa1069910-mRNA-1
chr7_2	exon	65764562	65764644	65764562	ID=Msa1069910-mRNA-1:exon:13871;Parent=Msa1069910-mRNA-1
chr7_2	exon	65764768	65764808	65764768	ID=Msa1069910-mRNA-1:exon:13872;Parent=Msa1069910-mRNA-1
chr7_2	exon	65765427	65765581	65765427	ID=Msa1069910-mRNA-1:exon:13873;Parent=Msa1069910-mRNA-1
chr7_2	exon	65765718	65765867	65765718	ID=Msa1069910-mRNA-1:exon:13874;Parent=Msa1069910-mRNA-1
chr7_2	exon	65765998	65766093	65765998	ID=Msa1069910-mRNA-1:exon:13875;Parent=Msa1069910-mRNA-1
chr7_2	exon	65766333	65766449	65766333	ID=Msa1069910-mRNA-1:exon:13876;Parent=Msa1069910-mRNA-1
chr7_2	exon	65766605	65766724	65766605	ID=Msa1069910-mRNA-1:exon:13877;Parent=Msa1069910-mRNA-1
chr7_2	exon	65766813	65766905	65766813	ID=Msa1069910-mRNA-1:exon:13878;Parent=Msa1069910-mRNA-1
chr7_2	exon	65766986	65767102	65766986	ID=Msa1069910-mRNA-1:exon:13879;Parent=Msa1069910-mRNA-1
chr7_2	exon	65767553	65767669	65767553	ID=Msa1069910-mRNA-1:exon:13880;Parent=Msa1069910-mRNA-1
chr7_2	exon	65767984	65768046	65767984	ID=Msa1069910-mRNA-1:exon:13881;Parent=Msa1069910-mRNA-1
chr7_2	exon	65768688	65769017	65768688	ID=Msa1069910-mRNA-1:exon:13882;Parent=Msa1069910-mRNA-1
chr7_2	exon	65769202	65769309	65769202	ID=Msa1069910-mRNA-1:exon:13883;Parent=Msa1069910-mRNA-1
chr7_2	five_prime_UTR	65763057	65763135	65763057	ID=Msa1069910-mRNA-1:five_prime_utr;Parent=Msa1069910-mRNA-1
chr7_2	five_prime_UTR	65763184	65763249	65763184	ID=Msa1069910-mRNA-1:five_prime_utr;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65763250	65763627	65763250	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65764562	65764644	65764562	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65764768	65764808	65764768	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65765427	65765581	65765427	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65765718	65765867	65765718	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65765998	65766093	65765998	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65766333	65766449	65766333	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65766605	65766724	65766605	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65766813	65766905	65766813	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65766986	65767102	65766986	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65767553	65767669	65767553	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65767984	65768046	65767984	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	CDS	65768688	65768831	65768688	ID=Msa1069910-mRNA-1:cds;Parent=Msa1069910-mRNA-1
chr7_2	three_prime_UTR	65768832	65769017	65768832	ID=Msa1069910-mRNA-1:three_prime_utr;Parent=Msa1069910-mRNA-1
chr7_2	three_prime_UTR	65769202	65769309	65769202	ID=Msa1069910-mRNA-1:three_prime_utr;Parent=Msa1069910-mRNA-1

Gene Sequence

>Msa1069910

ATGGCAACGCAAGTTGGTTACGTTAAAAGCGTATTCCCAGTAGCAACTACGCGCAAAATCTCACATTGCGAATCATCTTTGTTGCCGTGTCGAATCGGGTACATAGCGCGTGTTTCCCACGTTCCCCTTGTGAAGAAAGTGTCGAGTGATGCAGTTAGAATCAGTTGTTGCAGCAACAATGCGAGGGAAAGTGATTTTGGGGCTGAGAAGGTAGAGGAAACTGAAAAGAGTTACAGTGTTGTTATGAAATTTGGTGGGTCTTCTGTTGCTAATGCTGTGAGGATGAAAGAGATTGCTAATCTGATTTTGAGTTTTCCGGAAGAGAGGCCTATCATTGTTCTTTCTGCTATGGGAAAAACTACCAACAAACTTTTACTGGCTGGAGAAAAAGCTGTAAGCTGTGGAGTTACTAATGCTGATAGTATCGACGAGCTCAGCGATATAAAAGACTTGCATCTCAGGACAGTGGAGGAACTTGGAGTTGACAGAGATGTTATTTCAGAACATCTAGAAGAATTGGAGCAACTTCTGAAGGGGATTGCTATGATGAAAGAACTGACTCCACGGACTCAAGATTACTTGGTTTCATTTGGAGAGTGCATGTCCACTAGGATCTTTGCTGCATATCTTAATAAAATAGGTGTTAAGGCCCGTCAATATGATGCATTCGAGATTGGTTTTATAACAACTGATGACTTCACAAATGCGGACATTTTGGAGGCAACATATCCAGCTGTTGCGAAGAGGTTACATAGTGATTGGGTTTCTGATCCTGCAATTCCAATTGTTACAGGCTTCCTTGGAAAGGCTCGGAAATCATGTGCAAGGACAACATTGGGTAGAGGGGGTAGTGATTTGACAGCTACAACAATTGGGAAAGCACTAGGACTGCGAGAGATTCAGGTATGGAAAGATGTTGATGGTGTTCTAACCTGTGATCCAAATATATGCCCACAAGCAAAACCTGTTCCGTATTTGACATTTGACGAGGCCGCCGAACTTGCATACTTCGGTGCTCAGGTCCTGCATCCACAGTCTATGAGACCTGCTAGAGAAGCTGAGATTCCTGTTAGGGTTAAAAATTCCTACAACCCTAAAGCTTCGGGTACCCTTATCACCAAAACAAGAGACATGAGCAAGGCATTATTAACTAGCATTGTTTTGAAACGTAATGTTACCACGTTGGATATTGTAAGCACCCGCATGCTTGGTGCGGTTGGGTTCCTTGCTAAGGTGTTTTCAATCTTTGAAGATTTAGGCATATCAATTGATATGGTAGCTACAAGTGAGGTTAGTATTTCCTTGACGTTGGATCCGTCCAAGCTGTGGAGCAGAGAGCTAATTCAACAAGAACTTGACTATGTTGTTGAAGAACTGGAAAAAATTTCTGTGGTGAATCTCCTTAAAAATAGATCCATAATCTCTCTTATTGGAAACGTTCAGATGTCGTCACTGATACTGGAGAAGGCCTTTCAAGTTCTTGGATCCCTTGGTGTCAATGTTCAAATGATTTCTCAGGGTGCATCTAAGGTTAATATCTCATTAGTTGTAAACAACGACGAAGCAGAGCAGTCTGTCAGGACTCTCCACAAAATCTTCTTTGAGTGTGGCAAGCTCTCTGAATTAGAGAATGAATCCATACCTGAAAATGGTTCTGTTCGTACATTATCTTAA

Protein sequence

>Msa1069910

MATQVGYVKSVFPVATTRKISHCESSLLPCRIGYIARVSHVPLVKKVSSDAVRISCCSNNARESDFGAEKVEETEKSYSVVMKFGGSSVANAVRMKEIANLILSFPEERPIIVLSAMGKTTNKLLLAGEKAVSCGVTNADSIDELSDIKDLHLRTVEELGVDRDVISEHLEELEQLLKGIAMMKELTPRTQDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLHSDWVSDPAIPIVTGFLGKARKSCARTTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNICPQAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREAEIPVRVKNSYNPKASGTLITKTRDMSKALLTSIVLKRNVTTLDIVSTRMLGAVGFLAKVFSIFEDLGISIDMVATSEVSISLTLDPSKLWSRELIQQELDYVVEELEKISVVNLLKNRSIISLIGNVQMSSLILEKAFQVLGSLGVNVQMISQGASKVNISLVVNNDEAEQSVRTLHKIFFECGKLSELENESIPENGSVRTLS*