Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070940 | XP_013449050.2 | 92.179 | 179 | 14 | 0 | 1 | 179 | 1 | 179 | 9.60e-119 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070940 | A0A396H0Q3 | 92.179 | 179 | 14 | 0 | 1 | 179 | 1 | 179 | 4.58e-119 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1070910 | Msa1070940 | 0.822947 | 1.803244e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070940 | MtrunA17_Chr7g0241061 | 92.179 | 179 | 14 | 0 | 1 | 179 | 1 | 179 | 8.83e-123 | 343 |
| Msa1070940 | MtrunA17_Chr4g0008131 | 71.598 | 169 | 48 | 0 | 1 | 169 | 1 | 169 | 2.51e-87 | 255 |
| Msa1070940 | MtrunA17_Chr4g0008141 | 68.539 | 178 | 56 | 0 | 1 | 178 | 1 | 178 | 8.03e-84 | 245 |
| Msa1070940 | MtrunA17_Chr4g0008121 | 68.508 | 181 | 55 | 1 | 1 | 179 | 1 | 181 | 3.87e-79 | 234 |
| Msa1070940 | MtrunA17_Chr1g0203171 | 51.282 | 156 | 75 | 1 | 12 | 166 | 15 | 170 | 1.03e-53 | 169 |
| Msa1070940 | MtrunA17_Chr6g0472041 | 47.368 | 171 | 86 | 2 | 7 | 176 | 4 | 171 | 1.52e-53 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070940 | AT3G54040.1 | 57.778 | 180 | 70 | 4 | 1 | 178 | 1 | 176 | 1.28e-67 | 204 |
| Msa1070940 | AT3G54040.2 | 60.355 | 169 | 61 | 4 | 1 | 167 | 57 | 221 | 6.76e-67 | 204 |
| Msa1070940 | AT5G52390.1 | 44.134 | 179 | 99 | 1 | 1 | 178 | 1 | 179 | 3.85e-51 | 163 |
Find 51 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAGCTTTCACTTTATTT+TGG | 0.138235 | 7_2:+67269279 | Msa1070940:three_prime_UTR |
| GAGCATAATCAAAGGTAATT+TGG | 0.227054 | 7_2:-67268122 | None:intergenic |
| CGAAGGATGCATGGATAAAA+AGG | 0.255435 | 7_2:-67268153 | None:intergenic |
| AAAGACATGATTTAAAATTC+TGG | 0.259382 | 7_2:-67268094 | None:intergenic |
| TGTGAACAACTATGTGTAAA+AGG | 0.268675 | 7_2:-67267991 | None:intergenic |
| CGAGTTCATTATTATGTGAT+TGG | 0.295505 | 7_2:+67269324 | Msa1070940:three_prime_UTR |
| GTATAGTGTATCAAGAATTA+AGG | 0.329246 | 7_2:-67268055 | None:intergenic |
| CCTATATATAACCAAGTCTT+TGG | 0.331897 | 7_2:+67267966 | Msa1070940:five_prime_UTR |
| CTTTACTTCAATTTGGCTGC+TGG | 0.332953 | 7_2:+67268585 | Msa1070940:CDS |
| GTCAGCTCTGGAGCTGCACC+TGG | 0.364785 | 7_2:+67269189 | Msa1070940:CDS |
| CTTAGGATACTTTGTTTACA+TGG | 0.379493 | 7_2:-67269262 | None:intergenic |
| TCTTGTGACAGAGCAGAAAC+AGG | 0.399775 | 7_2:-67269213 | None:intergenic |
| ATCGGGAAAACGGTGTTTGT+TGG | 0.402755 | 7_2:+67268341 | Msa1070940:CDS |
| CCAAAGACTTGGTTATATAT+AGG | 0.412008 | 7_2:-67267966 | None:intergenic |
| AAAATGATGAATATATGGTT+TGG | 0.435228 | 7_2:-67268020 | None:intergenic |
| ATGATCGAGCTTGTCAGCTC+TGG | 0.439225 | 7_2:+67269177 | Msa1070940:CDS |
| TTCCTTCTCAATAGCTTCAT+CGG | 0.440884 | 7_2:+67268323 | Msa1070940:CDS |
| TTCAATTTGGCTGCTGGGGA+AGG | 0.450339 | 7_2:+67268591 | Msa1070940:CDS |
| TCCTTCTCAATAGCTTCATC+GGG | 0.458800 | 7_2:+67268324 | Msa1070940:CDS |
| CCAAAATAAAGTGAAAGCTT+AGG | 0.469606 | 7_2:-67269279 | None:intergenic |
| TTTACTTCAATTTGGCTGCT+GGG | 0.473999 | 7_2:+67268586 | Msa1070940:CDS |
| CAATAGCTTCATCGGGAAAA+CGG | 0.487446 | 7_2:+67268331 | Msa1070940:CDS |
| AGAAGTTGTGGTGGAGAGAA+TGG | 0.488502 | 7_2:+67268413 | Msa1070940:CDS |
| TACTTTGTTTACATGGGAGA+AGG | 0.498445 | 7_2:-67269255 | None:intergenic |
| CAGCAGCCAAATTGAAGTAA+AGG | 0.504408 | 7_2:-67268584 | None:intergenic |
| GCTCGATCATAGCGCGATGA+GGG | 0.529694 | 7_2:-67269164 | None:intergenic |
| GACAGAGCAGAAACAGGGCC+AGG | 0.529854 | 7_2:-67269207 | None:intergenic |
| TCCCGATGAAGCTATTGAGA+AGG | 0.547199 | 7_2:-67268325 | None:intergenic |
| GCGACAGAGAAGGCCGCAGA+TGG | 0.547625 | 7_2:+67268363 | Msa1070940:CDS |
| TGTAAAAGGCACCAAAGACT+TGG | 0.550876 | 7_2:-67267977 | None:intergenic |
| TTAGGATACTTTGTTTACAT+GGG | 0.551833 | 7_2:-67269261 | None:intergenic |
| ACTTTGTTTACATGGGAGAA+GGG | 0.558007 | 7_2:-67269254 | None:intergenic |
| GTTGTGGTGGAGAGAATGGC+GGG | 0.559681 | 7_2:+67268417 | Msa1070940:CDS |
| GTGTTTGTTGGCGACAGAGA+AGG | 0.566528 | 7_2:+67268353 | Msa1070940:CDS |
| GATCATAGCGCGATGAGGGT+TGG | 0.568904 | 7_2:-67269160 | None:intergenic |
| CTTTGTTTACATGGGAGAAG+GGG | 0.572016 | 7_2:-67269253 | None:intergenic |
| AGCTCGATCATAGCGCGATG+AGG | 0.572301 | 7_2:-67269165 | None:intergenic |
| ACAGAGAAGGCCGCAGATGG+TGG | 0.586648 | 7_2:+67268366 | Msa1070940:CDS |
| TTACTTCAATTTGGCTGCTG+GGG | 0.597417 | 7_2:+67268587 | Msa1070940:CDS |
| ATGTAGGACATCAGAAGTTG+TGG | 0.601571 | 7_2:+67268401 | Msa1070940:CDS |
| CAACTTCTGATGTCCTACAT+TGG | 0.601824 | 7_2:-67268398 | None:intergenic |
| TGTGTGTACCGAAGGATGCA+TGG | 0.608900 | 7_2:-67268162 | None:intergenic |
| TGTGTGTGAGGAGTTGCAAA+AGG | 0.620931 | 7_2:+67268293 | Msa1070940:CDS |
| GAACACAAGAGCATAATCAA+AGG | 0.628881 | 7_2:-67268130 | None:intergenic |
| TAGGACATCAGAAGTTGTGG+TGG | 0.629632 | 7_2:+67268404 | Msa1070940:CDS |
| CTTGTGACAGAGCAGAAACA+GGG | 0.634654 | 7_2:-67269212 | None:intergenic |
| GTGGCGTCGAGTACCAATGT+AGG | 0.640711 | 7_2:+67268385 | Msa1070940:CDS |
| GATCAATGTGTGAATGCTTG+CGG | 0.665620 | 7_2:+67268453 | Msa1070940:CDS |
| AGTTGTGGTGGAGAGAATGG+CGG | 0.675828 | 7_2:+67268416 | Msa1070940:CDS |
| GACAGCTGAAGTTGTGTGTG+AGG | 0.677896 | 7_2:+67268281 | Msa1070940:intron |
| GTACTCGACGCCACCATCTG+CGG | 0.692101 | 7_2:-67268376 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATAAATAAATTGCAT+AGG | - | chr7_2:67268233-67268252 | None:intergenic | 10.0% |
| !!! | TTTTCTAGAAAAAAAAATTA+TGG | + | chr7_2:67268834-67268853 | Msa1070940:intron | 10.0% |
| !! | TTAAAATAAATAAATTGCAT+AGG | - | chr7_2:67268233-67268252 | None:intergenic | 10.0% |
| !!! | TTTTCTAGAAAAAAAAATTA+TGG | + | chr7_2:67268834-67268853 | Msa1070940:intron | 10.0% |
| !! | TGTAAAAAATGATGAATATA+TGG | - | chr7_2:67268028-67268047 | None:intergenic | 15.0% |
| !!! | TTTTGAACAATTCAAATAAT+TGG | + | chr7_2:67268708-67268727 | Msa1070940:intron | 15.0% |
| !! | TTTGAACAATTCAAATAATT+GGG | + | chr7_2:67268709-67268728 | Msa1070940:intron | 15.0% |
| !! | AAGAAATTAAAACAAAAAGA+AGG | - | chr7_2:67268807-67268826 | None:intergenic | 15.0% |
| !!! | TTCTTTTTGTTTTAATTTCT+TGG | + | chr7_2:67268806-67268825 | Msa1070940:intron | 15.0% |
| !! | TTAACTTCAAATTTAATCAA+AGG | + | chr7_2:67268961-67268980 | Msa1070940:intron | 15.0% |
| !! | TAACTTCAAATTTAATCAAA+GGG | + | chr7_2:67268962-67268981 | Msa1070940:intron | 15.0% |
| !! | AACAAAAAATAAAACAAAGA+AGG | + | chr7_2:67269005-67269024 | Msa1070940:intron | 15.0% |
| !! | TCTTGATATTATAATAAAGA+AGG | + | chr7_2:67269082-67269101 | Msa1070940:intron | 15.0% |
| !! | TGTAAAAAATGATGAATATA+TGG | - | chr7_2:67268028-67268047 | None:intergenic | 15.0% |
| !!! | TTTTGAACAATTCAAATAAT+TGG | + | chr7_2:67268708-67268727 | Msa1070940:intron | 15.0% |
| !! | TTTGAACAATTCAAATAATT+GGG | + | chr7_2:67268709-67268728 | Msa1070940:intron | 15.0% |
| !! | AAGAAATTAAAACAAAAAGA+AGG | - | chr7_2:67268807-67268826 | None:intergenic | 15.0% |
| !!! | TTCTTTTTGTTTTAATTTCT+TGG | + | chr7_2:67268806-67268825 | Msa1070940:intron | 15.0% |
| !! | TTAACTTCAAATTTAATCAA+AGG | + | chr7_2:67268961-67268980 | Msa1070940:intron | 15.0% |
| !! | TAACTTCAAATTTAATCAAA+GGG | + | chr7_2:67268962-67268981 | Msa1070940:intron | 15.0% |
| !! | AACAAAAAATAAAACAAAGA+AGG | + | chr7_2:67269005-67269024 | Msa1070940:intron | 15.0% |
| !! | TCTTGATATTATAATAAAGA+AGG | + | chr7_2:67269082-67269101 | Msa1070940:intron | 15.0% |
| !! | AAAATGATGAATATATGGTT+TGG | - | chr7_2:67268023-67268042 | None:intergenic | 20.0% |
| !!! | AAAGACATGATTTAAAATTC+TGG | - | chr7_2:67268097-67268116 | None:intergenic | 20.0% |
| !! | TAATTGGAAAATATATAGCA+GGG | - | chr7_2:67268199-67268218 | None:intergenic | 20.0% |
| !! | AAGTAAAGGTCAAAAATATT+GGG | - | chr7_2:67268573-67268592 | None:intergenic | 20.0% |
| !! | TTGTTCAAAATATGATGAAA+AGG | - | chr7_2:67268698-67268717 | None:intergenic | 20.0% |
| !!! | TTGAATTGTTCTAAATAAGA+TGG | - | chr7_2:67268779-67268798 | None:intergenic | 20.0% |
| !!! | AGAAGAAACAATAATTTTGT+TGG | + | chr7_2:67269372-67269391 | Msa1070940:three_prime_UTR | 20.0% |
| !! | AAAATGATGAATATATGGTT+TGG | - | chr7_2:67268023-67268042 | None:intergenic | 20.0% |
| !!! | AAAGACATGATTTAAAATTC+TGG | - | chr7_2:67268097-67268116 | None:intergenic | 20.0% |
| !! | TAATTGGAAAATATATAGCA+GGG | - | chr7_2:67268199-67268218 | None:intergenic | 20.0% |
| !! | AAGTAAAGGTCAAAAATATT+GGG | - | chr7_2:67268573-67268592 | None:intergenic | 20.0% |
| !! | TTGTTCAAAATATGATGAAA+AGG | - | chr7_2:67268698-67268717 | None:intergenic | 20.0% |
| !!! | TTGAATTGTTCTAAATAAGA+TGG | - | chr7_2:67268779-67268798 | None:intergenic | 20.0% |
| !!! | AGAAGAAACAATAATTTTGT+TGG | + | chr7_2:67269372-67269391 | Msa1070940:three_prime_UTR | 20.0% |
| ! | GTATAGTGTATCAAGAATTA+AGG | - | chr7_2:67268058-67268077 | None:intergenic | 25.0% |
| ! | GTAATTGGAAAATATATAGC+AGG | - | chr7_2:67268200-67268219 | None:intergenic | 25.0% |
| ! | ATAGGTAACTAGATAGTAAT+TGG | - | chr7_2:67268215-67268234 | None:intergenic | 25.0% |
| ! | AGTAAAGGTCAAAAATATTG+GGG | - | chr7_2:67268572-67268591 | None:intergenic | 25.0% |
| ! | GAAGTAAAGGTCAAAAATAT+TGG | - | chr7_2:67268574-67268593 | None:intergenic | 25.0% |
| !! | TTTTGACCTTTACTTCAATT+TGG | + | chr7_2:67268578-67268597 | Msa1070940:CDS | 25.0% |
| ! | ATCTTCATGCATAAAAGTTA+TGG | - | chr7_2:67268638-67268657 | None:intergenic | 25.0% |
| !! | TTGTTCTAAATAAGATGGAA+AGG | - | chr7_2:67268774-67268793 | None:intergenic | 25.0% |
| ! | GTTAAAATGTTAGATCATGA+CGG | - | chr7_2:67268946-67268965 | None:intergenic | 25.0% |
| !! | TTAGGATACTTTGTTTACAT+GGG | - | chr7_2:67269264-67269283 | None:intergenic | 25.0% |
| !! | ACAATAATTTTGTTGGTACT+CGG | + | chr7_2:67269379-67269398 | Msa1070940:three_prime_UTR | 25.0% |
| ! | GTATAGTGTATCAAGAATTA+AGG | - | chr7_2:67268058-67268077 | None:intergenic | 25.0% |
| ! | GTAATTGGAAAATATATAGC+AGG | - | chr7_2:67268200-67268219 | None:intergenic | 25.0% |
| ! | ATAGGTAACTAGATAGTAAT+TGG | - | chr7_2:67268215-67268234 | None:intergenic | 25.0% |
| ! | AGTAAAGGTCAAAAATATTG+GGG | - | chr7_2:67268572-67268591 | None:intergenic | 25.0% |
| ! | GAAGTAAAGGTCAAAAATAT+TGG | - | chr7_2:67268574-67268593 | None:intergenic | 25.0% |
| !! | TTTTGACCTTTACTTCAATT+TGG | + | chr7_2:67268578-67268597 | Msa1070940:CDS | 25.0% |
| ! | ATCTTCATGCATAAAAGTTA+TGG | - | chr7_2:67268638-67268657 | None:intergenic | 25.0% |
| !! | TTGTTCTAAATAAGATGGAA+AGG | - | chr7_2:67268774-67268793 | None:intergenic | 25.0% |
| ! | GTTAAAATGTTAGATCATGA+CGG | - | chr7_2:67268946-67268965 | None:intergenic | 25.0% |
| !! | TTAGGATACTTTGTTTACAT+GGG | - | chr7_2:67269264-67269283 | None:intergenic | 25.0% |
| !! | ACAATAATTTTGTTGGTACT+CGG | + | chr7_2:67269379-67269398 | Msa1070940:three_prime_UTR | 25.0% |
| ! | CCAAAGACTTGGTTATATAT+AGG | - | chr7_2:67267969-67267988 | None:intergenic | 30.0% |
| CCTATATATAACCAAGTCTT+TGG | + | chr7_2:67267966-67267985 | Msa1070940:five_prime_UTR | 30.0% | |
| TGTGAACAACTATGTGTAAA+AGG | - | chr7_2:67267994-67268013 | None:intergenic | 30.0% | |
| GAGCATAATCAAAGGTAATT+TGG | - | chr7_2:67268125-67268144 | None:intergenic | 30.0% | |
| ! | GGAGTTGAAAGAAATTTTGT+CGG | + | chr7_2:67268474-67268493 | Msa1070940:CDS | 30.0% |
| ! | ACTTTTATGCATGAAGATCA+TGG | + | chr7_2:67268640-67268659 | Msa1070940:intron | 30.0% |
| !! | GAAGGTTATTTTCTTGTAGA+AGG | + | chr7_2:67269023-67269042 | Msa1070940:intron | 30.0% |
| ! | CTTAGGATACTTTGTTTACA+TGG | - | chr7_2:67269265-67269284 | None:intergenic | 30.0% |
| CCAAAATAAAGTGAAAGCTT+AGG | - | chr7_2:67269282-67269301 | None:intergenic | 30.0% | |
| !! | CCTAAGCTTTCACTTTATTT+TGG | + | chr7_2:67269279-67269298 | Msa1070940:three_prime_UTR | 30.0% |
| CGAGTTCATTATTATGTGAT+TGG | + | chr7_2:67269324-67269343 | Msa1070940:three_prime_UTR | 30.0% | |
| ! | CCAAAGACTTGGTTATATAT+AGG | - | chr7_2:67267969-67267988 | None:intergenic | 30.0% |
| CCTATATATAACCAAGTCTT+TGG | + | chr7_2:67267966-67267985 | Msa1070940:five_prime_UTR | 30.0% | |
| TGTGAACAACTATGTGTAAA+AGG | - | chr7_2:67267994-67268013 | None:intergenic | 30.0% | |
| GAGCATAATCAAAGGTAATT+TGG | - | chr7_2:67268125-67268144 | None:intergenic | 30.0% | |
| ! | GGAGTTGAAAGAAATTTTGT+CGG | + | chr7_2:67268474-67268493 | Msa1070940:CDS | 30.0% |
| ! | ACTTTTATGCATGAAGATCA+TGG | + | chr7_2:67268640-67268659 | Msa1070940:intron | 30.0% |
| !! | GAAGGTTATTTTCTTGTAGA+AGG | + | chr7_2:67269023-67269042 | Msa1070940:intron | 30.0% |
| ! | CTTAGGATACTTTGTTTACA+TGG | - | chr7_2:67269265-67269284 | None:intergenic | 30.0% |
| CCAAAATAAAGTGAAAGCTT+AGG | - | chr7_2:67269282-67269301 | None:intergenic | 30.0% | |
| !! | CCTAAGCTTTCACTTTATTT+TGG | + | chr7_2:67269279-67269298 | Msa1070940:three_prime_UTR | 30.0% |
| CGAGTTCATTATTATGTGAT+TGG | + | chr7_2:67269324-67269343 | Msa1070940:three_prime_UTR | 30.0% | |
| ! | GAACACAAGAGCATAATCAA+AGG | - | chr7_2:67268133-67268152 | None:intergenic | 35.0% |
| GAAGGATGCATGGATAAAAA+GGG | - | chr7_2:67268155-67268174 | None:intergenic | 35.0% | |
| ! | CTTTTTATCCATGCATCCTT+CGG | + | chr7_2:67268154-67268173 | Msa1070940:CDS | 35.0% |
| TTCCTTCTCAATAGCTTCAT+CGG | + | chr7_2:67268323-67268342 | Msa1070940:CDS | 35.0% | |
| !! | CAAAGTTTTGCTGTGAATTG+TGG | - | chr7_2:67268525-67268544 | None:intergenic | 35.0% |
| TTTACTTCAATTTGGCTGCT+GGG | + | chr7_2:67268586-67268605 | Msa1070940:CDS | 35.0% | |
| AATTGGGACATAGTGATTTG+TGG | + | chr7_2:67268725-67268744 | Msa1070940:intron | 35.0% | |
| ! | AGGTTACTTTGATACTATGC+AGG | + | chr7_2:67269102-67269121 | Msa1070940:intron | 35.0% |
| ! | ACTTTGTTTACATGGGAGAA+GGG | - | chr7_2:67269257-67269276 | None:intergenic | 35.0% |
| ! | TACTTTGTTTACATGGGAGA+AGG | - | chr7_2:67269258-67269277 | None:intergenic | 35.0% |
| ! | GAACACAAGAGCATAATCAA+AGG | - | chr7_2:67268133-67268152 | None:intergenic | 35.0% |
| GAAGGATGCATGGATAAAAA+GGG | - | chr7_2:67268155-67268174 | None:intergenic | 35.0% | |
| ! | CTTTTTATCCATGCATCCTT+CGG | + | chr7_2:67268154-67268173 | Msa1070940:CDS | 35.0% |
| TTCCTTCTCAATAGCTTCAT+CGG | + | chr7_2:67268323-67268342 | Msa1070940:CDS | 35.0% | |
| !! | CAAAGTTTTGCTGTGAATTG+TGG | - | chr7_2:67268525-67268544 | None:intergenic | 35.0% |
| TTTACTTCAATTTGGCTGCT+GGG | + | chr7_2:67268586-67268605 | Msa1070940:CDS | 35.0% | |
| AATTGGGACATAGTGATTTG+TGG | + | chr7_2:67268725-67268744 | Msa1070940:intron | 35.0% | |
| ! | AGGTTACTTTGATACTATGC+AGG | + | chr7_2:67269102-67269121 | Msa1070940:intron | 35.0% |
| ! | ACTTTGTTTACATGGGAGAA+GGG | - | chr7_2:67269257-67269276 | None:intergenic | 35.0% |
| ! | TACTTTGTTTACATGGGAGA+AGG | - | chr7_2:67269258-67269277 | None:intergenic | 35.0% |
| !! | TGTAAAAGGCACCAAAGACT+TGG | - | chr7_2:67267980-67267999 | None:intergenic | 40.0% |
| CGAAGGATGCATGGATAAAA+AGG | - | chr7_2:67268156-67268175 | None:intergenic | 40.0% | |
| GTATATAGTGTGTGTACCGA+AGG | - | chr7_2:67268173-67268192 | None:intergenic | 40.0% | |
| TCCTTCTCAATAGCTTCATC+GGG | + | chr7_2:67268324-67268343 | Msa1070940:CDS | 40.0% | |
| CAATAGCTTCATCGGGAAAA+CGG | + | chr7_2:67268331-67268350 | Msa1070940:CDS | 40.0% | |
| CAACTTCTGATGTCCTACAT+TGG | - | chr7_2:67268401-67268420 | None:intergenic | 40.0% | |
| ATGTAGGACATCAGAAGTTG+TGG | + | chr7_2:67268401-67268420 | Msa1070940:CDS | 40.0% | |
| GATCAATGTGTGAATGCTTG+CGG | + | chr7_2:67268453-67268472 | Msa1070940:CDS | 40.0% | |
| CAGCAGCCAAATTGAAGTAA+AGG | - | chr7_2:67268587-67268606 | None:intergenic | 40.0% | |
| CTTTACTTCAATTTGGCTGC+TGG | + | chr7_2:67268585-67268604 | Msa1070940:CDS | 40.0% | |
| TTACTTCAATTTGGCTGCTG+GGG | + | chr7_2:67268587-67268606 | Msa1070940:CDS | 40.0% | |
| ! | TTTTGCATCTCACAGAGATC+AGG | - | chr7_2:67269138-67269157 | None:intergenic | 40.0% |
| ! | CTTTGTTTACATGGGAGAAG+GGG | - | chr7_2:67269256-67269275 | None:intergenic | 40.0% |
| !! | TGTAAAAGGCACCAAAGACT+TGG | - | chr7_2:67267980-67267999 | None:intergenic | 40.0% |
| CGAAGGATGCATGGATAAAA+AGG | - | chr7_2:67268156-67268175 | None:intergenic | 40.0% | |
| GTATATAGTGTGTGTACCGA+AGG | - | chr7_2:67268173-67268192 | None:intergenic | 40.0% | |
| TCCTTCTCAATAGCTTCATC+GGG | + | chr7_2:67268324-67268343 | Msa1070940:CDS | 40.0% | |
| CAATAGCTTCATCGGGAAAA+CGG | + | chr7_2:67268331-67268350 | Msa1070940:CDS | 40.0% | |
| CAACTTCTGATGTCCTACAT+TGG | - | chr7_2:67268401-67268420 | None:intergenic | 40.0% | |
| ATGTAGGACATCAGAAGTTG+TGG | + | chr7_2:67268401-67268420 | Msa1070940:CDS | 40.0% | |
| GATCAATGTGTGAATGCTTG+CGG | + | chr7_2:67268453-67268472 | Msa1070940:CDS | 40.0% | |
| CAGCAGCCAAATTGAAGTAA+AGG | - | chr7_2:67268587-67268606 | None:intergenic | 40.0% | |
| CTTTACTTCAATTTGGCTGC+TGG | + | chr7_2:67268585-67268604 | Msa1070940:CDS | 40.0% | |
| TTACTTCAATTTGGCTGCTG+GGG | + | chr7_2:67268587-67268606 | Msa1070940:CDS | 40.0% | |
| ! | TTTTGCATCTCACAGAGATC+AGG | - | chr7_2:67269138-67269157 | None:intergenic | 40.0% |
| ! | CTTTGTTTACATGGGAGAAG+GGG | - | chr7_2:67269256-67269275 | None:intergenic | 40.0% |
| TGTGTGTGAGGAGTTGCAAA+AGG | + | chr7_2:67268293-67268312 | Msa1070940:CDS | 45.0% | |
| TCCCGATGAAGCTATTGAGA+AGG | - | chr7_2:67268328-67268347 | None:intergenic | 45.0% | |
| ATCGGGAAAACGGTGTTTGT+TGG | + | chr7_2:67268341-67268360 | Msa1070940:CDS | 45.0% | |
| TAGGACATCAGAAGTTGTGG+TGG | + | chr7_2:67268404-67268423 | Msa1070940:CDS | 45.0% | |
| ! | AGAAGTTGTGGTGGAGAGAA+TGG | + | chr7_2:67268413-67268432 | Msa1070940:CDS | 45.0% |
| CTTGTGACAGAGCAGAAACA+GGG | - | chr7_2:67269215-67269234 | None:intergenic | 45.0% | |
| TCTTGTGACAGAGCAGAAAC+AGG | - | chr7_2:67269216-67269235 | None:intergenic | 45.0% | |
| TGTGTGTGAGGAGTTGCAAA+AGG | + | chr7_2:67268293-67268312 | Msa1070940:CDS | 45.0% | |
| TCCCGATGAAGCTATTGAGA+AGG | - | chr7_2:67268328-67268347 | None:intergenic | 45.0% | |
| ATCGGGAAAACGGTGTTTGT+TGG | + | chr7_2:67268341-67268360 | Msa1070940:CDS | 45.0% | |
| TAGGACATCAGAAGTTGTGG+TGG | + | chr7_2:67268404-67268423 | Msa1070940:CDS | 45.0% | |
| ! | AGAAGTTGTGGTGGAGAGAA+TGG | + | chr7_2:67268413-67268432 | Msa1070940:CDS | 45.0% |
| CTTGTGACAGAGCAGAAACA+GGG | - | chr7_2:67269215-67269234 | None:intergenic | 45.0% | |
| TCTTGTGACAGAGCAGAAAC+AGG | - | chr7_2:67269216-67269235 | None:intergenic | 45.0% | |
| TGTGTGTACCGAAGGATGCA+TGG | - | chr7_2:67268165-67268184 | None:intergenic | 50.0% | |
| GACAGCTGAAGTTGTGTGTG+AGG | + | chr7_2:67268281-67268300 | Msa1070940:intron | 50.0% | |
| ! | GTGTTTGTTGGCGACAGAGA+AGG | + | chr7_2:67268353-67268372 | Msa1070940:CDS | 50.0% |
| ! | AGTTGTGGTGGAGAGAATGG+CGG | + | chr7_2:67268416-67268435 | Msa1070940:CDS | 50.0% |
| TTCAATTTGGCTGCTGGGGA+AGG | + | chr7_2:67268591-67268610 | Msa1070940:CDS | 50.0% | |
| ATGATCGAGCTTGTCAGCTC+TGG | + | chr7_2:67269177-67269196 | Msa1070940:CDS | 50.0% | |
| TGTGTGTACCGAAGGATGCA+TGG | - | chr7_2:67268165-67268184 | None:intergenic | 50.0% | |
| GACAGCTGAAGTTGTGTGTG+AGG | + | chr7_2:67268281-67268300 | Msa1070940:intron | 50.0% | |
| ! | GTGTTTGTTGGCGACAGAGA+AGG | + | chr7_2:67268353-67268372 | Msa1070940:CDS | 50.0% |
| ! | AGTTGTGGTGGAGAGAATGG+CGG | + | chr7_2:67268416-67268435 | Msa1070940:CDS | 50.0% |
| TTCAATTTGGCTGCTGGGGA+AGG | + | chr7_2:67268591-67268610 | Msa1070940:CDS | 50.0% | |
| ATGATCGAGCTTGTCAGCTC+TGG | + | chr7_2:67269177-67269196 | Msa1070940:CDS | 50.0% | |
| ! | GTGGCGTCGAGTACCAATGT+AGG | + | chr7_2:67268385-67268404 | Msa1070940:CDS | 55.0% |
| ! | GTTGTGGTGGAGAGAATGGC+GGG | + | chr7_2:67268417-67268436 | Msa1070940:CDS | 55.0% |
| GATCATAGCGCGATGAGGGT+TGG | - | chr7_2:67269163-67269182 | None:intergenic | 55.0% | |
| GCTCGATCATAGCGCGATGA+GGG | - | chr7_2:67269167-67269186 | None:intergenic | 55.0% | |
| AGCTCGATCATAGCGCGATG+AGG | - | chr7_2:67269168-67269187 | None:intergenic | 55.0% | |
| ! | GTGGCGTCGAGTACCAATGT+AGG | + | chr7_2:67268385-67268404 | Msa1070940:CDS | 55.0% |
| ! | GTTGTGGTGGAGAGAATGGC+GGG | + | chr7_2:67268417-67268436 | Msa1070940:CDS | 55.0% |
| GATCATAGCGCGATGAGGGT+TGG | - | chr7_2:67269163-67269182 | None:intergenic | 55.0% | |
| GCTCGATCATAGCGCGATGA+GGG | - | chr7_2:67269167-67269186 | None:intergenic | 55.0% | |
| AGCTCGATCATAGCGCGATG+AGG | - | chr7_2:67269168-67269187 | None:intergenic | 55.0% | |
| ACAGAGAAGGCCGCAGATGG+TGG | + | chr7_2:67268366-67268385 | Msa1070940:CDS | 60.0% | |
| GTACTCGACGCCACCATCTG+CGG | - | chr7_2:67268379-67268398 | None:intergenic | 60.0% | |
| GACAGAGCAGAAACAGGGCC+AGG | - | chr7_2:67269210-67269229 | None:intergenic | 60.0% | |
| ACAGAGAAGGCCGCAGATGG+TGG | + | chr7_2:67268366-67268385 | Msa1070940:CDS | 60.0% | |
| GTACTCGACGCCACCATCTG+CGG | - | chr7_2:67268379-67268398 | None:intergenic | 60.0% | |
| GACAGAGCAGAAACAGGGCC+AGG | - | chr7_2:67269210-67269229 | None:intergenic | 60.0% | |
| GCGACAGAGAAGGCCGCAGA+TGG | + | chr7_2:67268363-67268382 | Msa1070940:CDS | 65.0% | |
| !! | GTCAGCTCTGGAGCTGCACC+TGG | + | chr7_2:67269189-67269208 | Msa1070940:CDS | 65.0% |
| GCGACAGAGAAGGCCGCAGA+TGG | + | chr7_2:67268363-67268382 | Msa1070940:CDS | 65.0% | |
| !! | GTCAGCTCTGGAGCTGCACC+TGG | + | chr7_2:67269189-67269208 | Msa1070940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 67267960 | 67269410 | 67267960 | ID=Msa1070940;Name=Msa1070940 |
| chr7_2 | mRNA | 67267960 | 67269410 | 67267960 | ID=Msa1070940-mRNA-1;Parent=Msa1070940;Name=Msa1070940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=149|1|1|1|0.5|0.33|3|141|179 |
| chr7_2 | exon | 67267960 | 67268175 | 67267960 | ID=Msa1070940-mRNA-1:exon:14549;Parent=Msa1070940-mRNA-1 |
| chr7_2 | exon | 67268286 | 67268612 | 67268286 | ID=Msa1070940-mRNA-1:exon:14550;Parent=Msa1070940-mRNA-1 |
| chr7_2 | exon | 67269124 | 67269410 | 67269124 | ID=Msa1070940-mRNA-1:exon:14551;Parent=Msa1070940-mRNA-1 |
| chr7_2 | five_prime_UTR | 67267960 | 67268108 | 67267960 | ID=Msa1070940-mRNA-1:five_prime_utr;Parent=Msa1070940-mRNA-1 |
| chr7_2 | CDS | 67268109 | 67268175 | 67268109 | ID=Msa1070940-mRNA-1:cds;Parent=Msa1070940-mRNA-1 |
| chr7_2 | CDS | 67268286 | 67268612 | 67268286 | ID=Msa1070940-mRNA-1:cds;Parent=Msa1070940-mRNA-1 |
| chr7_2 | CDS | 67269124 | 67269269 | 67269124 | ID=Msa1070940-mRNA-1:cds;Parent=Msa1070940-mRNA-1 |
| chr7_2 | three_prime_UTR | 67269270 | 67269410 | 67269270 | ID=Msa1070940-mRNA-1:three_prime_utr;Parent=Msa1070940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
