Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070910 | XP_013449050.2 | 93.855 | 179 | 11 | 0 | 1 | 179 | 1 | 179 | 1.12e-120 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070910 | A0A396H0Q3 | 93.855 | 179 | 11 | 0 | 1 | 179 | 1 | 179 | 5.33e-121 | 348 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025570 | Msa1070910 | 0.800462 | 1.425146e-48 | -8.615850e-47 |
| Msa0072180 | Msa1070910 | 0.802707 | 4.936254e-49 | -8.615850e-47 |
| Msa0657710 | Msa1070910 | 0.809301 | 2.024878e-50 | -8.615850e-47 |
| Msa0682910 | Msa1070910 | 0.803478 | 3.419974e-49 | -8.615850e-47 |
| Msa0702800 | Msa1070910 | 0.815126 | 1.084423e-51 | -8.615850e-47 |
| Msa0800150 | Msa1070910 | 0.808394 | 3.164161e-50 | -8.615850e-47 |
| Msa0800180 | Msa1070910 | 0.814336 | 1.623086e-51 | -8.615850e-47 |
| Msa0828960 | Msa1070910 | 0.805753 | 1.146488e-49 | -8.615850e-47 |
| Msa0145050 | Msa1070910 | 0.810123 | 1.348145e-50 | -8.615850e-47 |
| Msa1001930 | Msa1070910 | -0.812789 | 3.553384e-51 | -8.615850e-47 |
| Msa1019420 | Msa1070910 | 0.815716 | 8.016579e-52 | -8.615850e-47 |
| Msa1070910 | Msa1070940 | 0.822947 | 1.803244e-53 | -8.615850e-47 |
| Msa1070910 | Msa1081170 | 0.827103 | 1.881705e-54 | -8.615850e-47 |
| Msa1070910 | Msa1140930 | 0.801759 | 7.739185e-49 | -8.615850e-47 |
| Msa1070910 | Msa1203650 | 0.803187 | 3.928404e-49 | -8.615850e-47 |
| Msa1070910 | Msa1268360 | 0.809776 | 1.600450e-50 | -8.615850e-47 |
| Msa1070910 | Msa1268390 | 0.803554 | 3.298561e-49 | -8.615850e-47 |
| Msa1070910 | Msa1268420 | 0.803436 | 3.488874e-49 | -8.615850e-47 |
| Msa1070910 | Msa1273320 | 0.807309 | 5.384451e-50 | -8.615850e-47 |
| Msa1070910 | Msa1433570 | 0.812653 | 3.805159e-51 | -8.615850e-47 |
| Msa1070910 | Msa1439250 | 0.800303 | 1.535567e-48 | -8.615850e-47 |
| Msa0547370 | Msa1070910 | 0.802297 | 5.997967e-49 | -8.615850e-47 |
| Msa0566280 | Msa1070910 | 0.801164 | 1.024396e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070910 | MtrunA17_Chr7g0241061 | 93.855 | 179 | 11 | 0 | 1 | 179 | 1 | 179 | 1.03e-124 | 348 |
| Msa1070910 | MtrunA17_Chr4g0008131 | 69.822 | 169 | 51 | 0 | 1 | 169 | 1 | 169 | 1.64e-85 | 250 |
| Msa1070910 | MtrunA17_Chr4g0008141 | 67.416 | 178 | 58 | 0 | 1 | 178 | 1 | 178 | 9.57e-84 | 244 |
| Msa1070910 | MtrunA17_Chr4g0008121 | 66.851 | 181 | 58 | 1 | 1 | 179 | 1 | 181 | 1.97e-78 | 233 |
| Msa1070910 | MtrunA17_Chr6g0472041 | 49.123 | 171 | 83 | 2 | 7 | 176 | 4 | 171 | 4.81e-55 | 172 |
| Msa1070910 | MtrunA17_Chr1g0203171 | 52.941 | 153 | 71 | 1 | 15 | 166 | 18 | 170 | 2.66e-54 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070910 | AT3G54040.1 | 56.667 | 180 | 72 | 4 | 1 | 178 | 1 | 176 | 6.98e-67 | 202 |
| Msa1070910 | AT3G54040.2 | 59.172 | 169 | 63 | 4 | 1 | 167 | 57 | 221 | 2.70e-66 | 203 |
| Msa1070910 | AT5G52390.1 | 44.134 | 179 | 99 | 1 | 1 | 178 | 1 | 179 | 6.94e-51 | 162 |
Find 57 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAGCTTTCACTTTATTT+TGG | 0.138235 | 7_2:+67250003 | Msa1070910:three_prime_UTR |
| CAACAATATTGGGGCAATTT+TGG | 0.141377 | 7_2:-67249275 | None:intergenic |
| AAAGACATGGTTTAAAATTC+TGG | 0.176015 | 7_2:-67248808 | None:intergenic |
| TGTTGACCTTTACTTCAATT+TGG | 0.213939 | 7_2:+67249293 | Msa1070910:CDS |
| CTAAAGATACATGGATAAAA+AGG | 0.222715 | 7_2:-67248867 | None:intergenic |
| AAACATAATCAAAGGTAATT+TGG | 0.227054 | 7_2:-67248836 | None:intergenic |
| TGTGAACAACTATGTGTAAA+AGG | 0.268675 | 7_2:-67248719 | None:intergenic |
| GAAGTAAAGGTCAACAATAT+TGG | 0.286026 | 7_2:-67249286 | None:intergenic |
| CGAGTTCATTATTATGTGAT+TGG | 0.295505 | 7_2:+67250048 | Msa1070910:three_prime_UTR |
| AAGTAAAGGTCAACAATATT+GGG | 0.297379 | 7_2:-67249285 | None:intergenic |
| CTTTACTTCAATTTGGCTGC+TGG | 0.332953 | 7_2:+67249300 | Msa1070910:CDS |
| TCTTTCTCAATAGCTTCTTC+AGG | 0.363584 | 7_2:+67249039 | Msa1070910:CDS |
| TTTATAAGATTTGTGTATAG+TGG | 0.366994 | 7_2:-67248783 | None:intergenic |
| GTGAGCTCTGGAGCTGCACC+TGG | 0.378232 | 7_2:+67249913 | Msa1070910:CDS |
| CTTAGGATACTTTGTTTACA+TGG | 0.379493 | 7_2:-67249986 | None:intergenic |
| TCTTGTGACAGAGCAGAAAC+AGG | 0.399775 | 7_2:-67249937 | None:intergenic |
| TAGAAGAAACAATAATTTGT+TGG | 0.402455 | 7_2:+67250095 | Msa1070910:three_prime_UTR |
| TTCAGGAAAACGGTGTTTGT+TGG | 0.405418 | 7_2:+67249056 | Msa1070910:CDS |
| CCTATATATAACCAAGTCAT+TGG | 0.407121 | 7_2:+67248694 | Msa1070910:five_prime_UTR |
| CCAATGACTTGGTTATATAT+AGG | 0.409948 | 7_2:-67248694 | None:intergenic |
| AAAATGAAGAATATATGGTT+TGG | 0.438879 | 7_2:-67248748 | None:intergenic |
| ATGATCGAGCTTGTGAGCTC+TGG | 0.439225 | 7_2:+67249901 | Msa1070910:CDS |
| TTCAATTTGGCTGCTGGGGA+AGG | 0.450339 | 7_2:+67249306 | Msa1070910:CDS |
| CCAAAATAAAGTGAAAGCTT+AGG | 0.469606 | 7_2:-67250003 | None:intergenic |
| TTTACTTCAATTTGGCTGCT+GGG | 0.473999 | 7_2:+67249301 | Msa1070910:CDS |
| CAATAGCTTCTTCAGGAAAA+CGG | 0.477557 | 7_2:+67249046 | Msa1070910:CDS |
| AGAAGTAGTGGTGGAGCAAA+TGG | 0.478800 | 7_2:+67249128 | Msa1070910:CDS |
| TACTTTGTTTACATGGGAGA+AGG | 0.498445 | 7_2:-67249979 | None:intergenic |
| AACAATAATTTGTTGGTACT+CGG | 0.502054 | 7_2:+67250102 | Msa1070910:three_prime_UTR |
| CAGCAGCCAAATTGAAGTAA+AGG | 0.504408 | 7_2:-67249299 | None:intergenic |
| GACAGAGCAGAAACAGGGCC+AGG | 0.529854 | 7_2:-67249931 | None:intergenic |
| TTAGGATACTTTGTTTACAT+GGG | 0.551833 | 7_2:-67249985 | None:intergenic |
| ACTTTGTTTACATGGGAGAA+GGG | 0.558007 | 7_2:-67249978 | None:intergenic |
| GCTCGATCATAGCGCGATGA+GGG | 0.572009 | 7_2:-67249888 | None:intergenic |
| CTTTGTTTACATGGGAGAAG+GGG | 0.572016 | 7_2:-67249977 | None:intergenic |
| ACAGAGAAGGCAGCGGATGG+TGG | 0.581266 | 7_2:+67249081 | Msa1070910:CDS |
| TGTGTGTACCTAAAGATACA+TGG | 0.585474 | 7_2:-67248876 | None:intergenic |
| GTAGTGGTGGAGCAAATGGC+GGG | 0.589388 | 7_2:+67249132 | Msa1070910:CDS |
| GTGTTTGTTGGAGACAGAGA+AGG | 0.593902 | 7_2:+67249068 | Msa1070910:CDS |
| TTACTTCAATTTGGCTGCTG+GGG | 0.597417 | 7_2:+67249302 | Msa1070910:CDS |
| GATCATAGCGCGATGAGGGT+CGG | 0.606329 | 7_2:-67249884 | None:intergenic |
| ATGTAGGACATCAGAAGTAG+TGG | 0.608155 | 7_2:+67249116 | Msa1070910:CDS |
| CTACTTCTGATGTCCTACAT+TGG | 0.613644 | 7_2:-67249113 | None:intergenic |
| GAGACAGAGAAGGCAGCGGA+TGG | 0.613801 | 7_2:+67249078 | Msa1070910:CDS |
| AGCTCGATCATAGCGCGATG+AGG | 0.614616 | 7_2:-67249889 | None:intergenic |
| TGTAAAAGGAACCAATGACT+TGG | 0.614657 | 7_2:-67248705 | None:intergenic |
| AGTAGTGGTGGAGCAAATGG+CGG | 0.620474 | 7_2:+67249131 | Msa1070910:CDS |
| TGTGTGTGAGGAGTTGCAAA+AGG | 0.620931 | 7_2:+67249008 | Msa1070910:CDS |
| GTTGGAGACAGAGAAGGCAG+CGG | 0.628566 | 7_2:+67249074 | Msa1070910:CDS |
| TAGGACATCAGAAGTAGTGG+TGG | 0.629632 | 7_2:+67249119 | Msa1070910:CDS |
| CTTGTGACAGAGCAGAAACA+GGG | 0.634654 | 7_2:-67249936 | None:intergenic |
| AGTAAAGGTCAACAATATTG+GGG | 0.636729 | 7_2:-67249284 | None:intergenic |
| GTGGCGTCGAGTACCAATGT+AGG | 0.640711 | 7_2:+67249100 | Msa1070910:CDS |
| TAATTTGGATGAGAAAGACA+TGG | 0.651318 | 7_2:-67248821 | None:intergenic |
| GATCAATGTGTGAATGCTTG+CGG | 0.665620 | 7_2:+67249168 | Msa1070910:CDS |
| GACAGCTGAAGTTGTGTGTG+AGG | 0.677896 | 7_2:+67248996 | Msa1070910:intron |
| TGAATGCTTGCGGAGTTGAG+AGG | 0.714850 | 7_2:+67249178 | Msa1070910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATAAATAAATTGCAT+AGG | - | chr7_2:67248947-67248966 | None:intergenic | 10.0% |
| !! | TTAAAATAAATAAATTGCAT+AGG | - | chr7_2:67248947-67248966 | None:intergenic | 10.0% |
| !! | TGTAAAAAATGAAGAATATA+TGG | - | chr7_2:67248756-67248775 | None:intergenic | 15.0% |
| !!! | TTTTGAACAATTCAAATAAT+TGG | + | chr7_2:67249422-67249441 | Msa1070910:intron | 15.0% |
| !! | TTTGAACAATTCAAATAATT+GGG | + | chr7_2:67249423-67249442 | Msa1070910:intron | 15.0% |
| !!! | TTTTTCAAAATAAGATGAAA+AGG | - | chr7_2:67249488-67249507 | None:intergenic | 15.0% |
| !! | AAGAAATTAAAACAAAAAGA+AGG | - | chr7_2:67249521-67249540 | None:intergenic | 15.0% |
| !!! | TTCTTTTTGTTTTAATTTCT+TGG | + | chr7_2:67249520-67249539 | Msa1070910:intron | 15.0% |
| !! | TTAACTTCAAATTTAATCAA+AGG | + | chr7_2:67249679-67249698 | Msa1070910:intron | 15.0% |
| !! | TAACTTCAAATTTAATCAAA+GGG | + | chr7_2:67249680-67249699 | Msa1070910:intron | 15.0% |
| !! | AACAAAAAATAAAACAAAGA+AGG | + | chr7_2:67249725-67249744 | Msa1070910:intron | 15.0% |
| !! | TGTAAAAAATGAAGAATATA+TGG | - | chr7_2:67248756-67248775 | None:intergenic | 15.0% |
| !!! | TTTTGAACAATTCAAATAAT+TGG | + | chr7_2:67249422-67249441 | Msa1070910:intron | 15.0% |
| !! | TTTGAACAATTCAAATAATT+GGG | + | chr7_2:67249423-67249442 | Msa1070910:intron | 15.0% |
| !!! | TTTTTCAAAATAAGATGAAA+AGG | - | chr7_2:67249488-67249507 | None:intergenic | 15.0% |
| !! | AAGAAATTAAAACAAAAAGA+AGG | - | chr7_2:67249521-67249540 | None:intergenic | 15.0% |
| !!! | TTCTTTTTGTTTTAATTTCT+TGG | + | chr7_2:67249520-67249539 | Msa1070910:intron | 15.0% |
| !! | TTAACTTCAAATTTAATCAA+AGG | + | chr7_2:67249679-67249698 | Msa1070910:intron | 15.0% |
| !! | TAACTTCAAATTTAATCAAA+GGG | + | chr7_2:67249680-67249699 | Msa1070910:intron | 15.0% |
| !! | AACAAAAAATAAAACAAAGA+AGG | + | chr7_2:67249725-67249744 | Msa1070910:intron | 15.0% |
| !! | AAAATGAAGAATATATGGTT+TGG | - | chr7_2:67248751-67248770 | None:intergenic | 20.0% |
| !! | TTTATAAGATTTGTGTATAG+TGG | - | chr7_2:67248786-67248805 | None:intergenic | 20.0% |
| !! | AAACATAATCAAAGGTAATT+TGG | - | chr7_2:67248839-67248858 | None:intergenic | 20.0% |
| !! | TAAAGATACATGGATAAAAA+GGG | - | chr7_2:67248869-67248888 | None:intergenic | 20.0% |
| !! | TAATTGGAAAATATATAGCA+GGG | - | chr7_2:67248913-67248932 | None:intergenic | 20.0% |
| !! | TTGTTCAAAATATGATGAAA+AGG | - | chr7_2:67249412-67249431 | None:intergenic | 20.0% |
| !! | TTTCTTGAAGGAAAAAAATA+TGG | + | chr7_2:67249549-67249568 | Msa1070910:intron | 20.0% |
| !! | CTCTCTTGATATTATAATAA+AGG | + | chr7_2:67249800-67249819 | Msa1070910:intron | 20.0% |
| !!! | TAGAAGAAACAATAATTTGT+TGG | + | chr7_2:67250095-67250114 | Msa1070910:three_prime_UTR | 20.0% |
| !! | AAAATGAAGAATATATGGTT+TGG | - | chr7_2:67248751-67248770 | None:intergenic | 20.0% |
| !! | TTTATAAGATTTGTGTATAG+TGG | - | chr7_2:67248786-67248805 | None:intergenic | 20.0% |
| !! | AAACATAATCAAAGGTAATT+TGG | - | chr7_2:67248839-67248858 | None:intergenic | 20.0% |
| !! | TAAAGATACATGGATAAAAA+GGG | - | chr7_2:67248869-67248888 | None:intergenic | 20.0% |
| !! | TAATTGGAAAATATATAGCA+GGG | - | chr7_2:67248913-67248932 | None:intergenic | 20.0% |
| !! | TTGTTCAAAATATGATGAAA+AGG | - | chr7_2:67249412-67249431 | None:intergenic | 20.0% |
| !! | TTTCTTGAAGGAAAAAAATA+TGG | + | chr7_2:67249549-67249568 | Msa1070910:intron | 20.0% |
| !! | CTCTCTTGATATTATAATAA+AGG | + | chr7_2:67249800-67249819 | Msa1070910:intron | 20.0% |
| !!! | TAGAAGAAACAATAATTTGT+TGG | + | chr7_2:67250095-67250114 | Msa1070910:three_prime_UTR | 20.0% |
| !! | AAAGACATGGTTTAAAATTC+TGG | - | chr7_2:67248811-67248830 | None:intergenic | 25.0% |
| ! | GAACAGAAAAACATAATCAA+AGG | - | chr7_2:67248847-67248866 | None:intergenic | 25.0% |
| ! | CTAAAGATACATGGATAAAA+AGG | - | chr7_2:67248870-67248889 | None:intergenic | 25.0% |
| !! | CTTTTTATCCATGTATCTTT+AGG | + | chr7_2:67248868-67248887 | Msa1070910:CDS | 25.0% |
| ! | GTAATTGGAAAATATATAGC+AGG | - | chr7_2:67248914-67248933 | None:intergenic | 25.0% |
| ! | ATAGGTAACTAGATAGTAAT+TGG | - | chr7_2:67248929-67248948 | None:intergenic | 25.0% |
| ! | AAGTAAAGGTCAACAATATT+GGG | - | chr7_2:67249288-67249307 | None:intergenic | 25.0% |
| ! | ATCTTCATGCATAAAAGTTA+TGG | - | chr7_2:67249353-67249372 | None:intergenic | 25.0% |
| ! | TTTGCTTAATTACAAAGCAA+TGG | + | chr7_2:67249594-67249613 | Msa1070910:intron | 25.0% |
| ! | GTTAAAATGTTAGATCATGA+CGG | - | chr7_2:67249664-67249683 | None:intergenic | 25.0% |
| !! | TTAGGATACTTTGTTTACAT+GGG | - | chr7_2:67249988-67250007 | None:intergenic | 25.0% |
| !!! | AACAATAATTTGTTGGTACT+CGG | + | chr7_2:67250102-67250121 | Msa1070910:three_prime_UTR | 25.0% |
| !! | AAAGACATGGTTTAAAATTC+TGG | - | chr7_2:67248811-67248830 | None:intergenic | 25.0% |
| ! | GAACAGAAAAACATAATCAA+AGG | - | chr7_2:67248847-67248866 | None:intergenic | 25.0% |
| ! | CTAAAGATACATGGATAAAA+AGG | - | chr7_2:67248870-67248889 | None:intergenic | 25.0% |
| !! | CTTTTTATCCATGTATCTTT+AGG | + | chr7_2:67248868-67248887 | Msa1070910:CDS | 25.0% |
| ! | GTAATTGGAAAATATATAGC+AGG | - | chr7_2:67248914-67248933 | None:intergenic | 25.0% |
| ! | ATAGGTAACTAGATAGTAAT+TGG | - | chr7_2:67248929-67248948 | None:intergenic | 25.0% |
| ! | AAGTAAAGGTCAACAATATT+GGG | - | chr7_2:67249288-67249307 | None:intergenic | 25.0% |
| ! | ATCTTCATGCATAAAAGTTA+TGG | - | chr7_2:67249353-67249372 | None:intergenic | 25.0% |
| ! | TTTGCTTAATTACAAAGCAA+TGG | + | chr7_2:67249594-67249613 | Msa1070910:intron | 25.0% |
| ! | GTTAAAATGTTAGATCATGA+CGG | - | chr7_2:67249664-67249683 | None:intergenic | 25.0% |
| !! | TTAGGATACTTTGTTTACAT+GGG | - | chr7_2:67249988-67250007 | None:intergenic | 25.0% |
| !!! | AACAATAATTTGTTGGTACT+CGG | + | chr7_2:67250102-67250121 | Msa1070910:three_prime_UTR | 25.0% |
| !! | CCAATGACTTGGTTATATAT+AGG | - | chr7_2:67248697-67248716 | None:intergenic | 30.0% |
| CCTATATATAACCAAGTCAT+TGG | + | chr7_2:67248694-67248713 | Msa1070910:five_prime_UTR | 30.0% | |
| TGTGAACAACTATGTGTAAA+AGG | - | chr7_2:67248722-67248741 | None:intergenic | 30.0% | |
| TAATTTGGATGAGAAAGACA+TGG | - | chr7_2:67248824-67248843 | None:intergenic | 30.0% | |
| AGTAAAGGTCAACAATATTG+GGG | - | chr7_2:67249287-67249306 | None:intergenic | 30.0% | |
| GAAGTAAAGGTCAACAATAT+TGG | - | chr7_2:67249289-67249308 | None:intergenic | 30.0% | |
| TGTTGACCTTTACTTCAATT+TGG | + | chr7_2:67249293-67249312 | Msa1070910:CDS | 30.0% | |
| ! | ACTTTTATGCATGAAGATCA+TGG | + | chr7_2:67249355-67249374 | Msa1070910:intron | 30.0% |
| ! | CTTAGGATACTTTGTTTACA+TGG | - | chr7_2:67249989-67250008 | None:intergenic | 30.0% |
| CCAAAATAAAGTGAAAGCTT+AGG | - | chr7_2:67250006-67250025 | None:intergenic | 30.0% | |
| !! | CCTAAGCTTTCACTTTATTT+TGG | + | chr7_2:67250003-67250022 | Msa1070910:three_prime_UTR | 30.0% |
| CGAGTTCATTATTATGTGAT+TGG | + | chr7_2:67250048-67250067 | Msa1070910:three_prime_UTR | 30.0% | |
| !! | CCAATGACTTGGTTATATAT+AGG | - | chr7_2:67248697-67248716 | None:intergenic | 30.0% |
| CCTATATATAACCAAGTCAT+TGG | + | chr7_2:67248694-67248713 | Msa1070910:five_prime_UTR | 30.0% | |
| TGTGAACAACTATGTGTAAA+AGG | - | chr7_2:67248722-67248741 | None:intergenic | 30.0% | |
| TAATTTGGATGAGAAAGACA+TGG | - | chr7_2:67248824-67248843 | None:intergenic | 30.0% | |
| AGTAAAGGTCAACAATATTG+GGG | - | chr7_2:67249287-67249306 | None:intergenic | 30.0% | |
| GAAGTAAAGGTCAACAATAT+TGG | - | chr7_2:67249289-67249308 | None:intergenic | 30.0% | |
| TGTTGACCTTTACTTCAATT+TGG | + | chr7_2:67249293-67249312 | Msa1070910:CDS | 30.0% | |
| ! | ACTTTTATGCATGAAGATCA+TGG | + | chr7_2:67249355-67249374 | Msa1070910:intron | 30.0% |
| ! | CTTAGGATACTTTGTTTACA+TGG | - | chr7_2:67249989-67250008 | None:intergenic | 30.0% |
| CCAAAATAAAGTGAAAGCTT+AGG | - | chr7_2:67250006-67250025 | None:intergenic | 30.0% | |
| !! | CCTAAGCTTTCACTTTATTT+TGG | + | chr7_2:67250003-67250022 | Msa1070910:three_prime_UTR | 30.0% |
| CGAGTTCATTATTATGTGAT+TGG | + | chr7_2:67250048-67250067 | Msa1070910:three_prime_UTR | 30.0% | |
| TGTAAAAGGAACCAATGACT+TGG | - | chr7_2:67248708-67248727 | None:intergenic | 35.0% | |
| TGTGTGTACCTAAAGATACA+TGG | - | chr7_2:67248879-67248898 | None:intergenic | 35.0% | |
| TCTTTCTCAATAGCTTCTTC+AGG | + | chr7_2:67249039-67249058 | Msa1070910:CDS | 35.0% | |
| CAATAGCTTCTTCAGGAAAA+CGG | + | chr7_2:67249046-67249065 | Msa1070910:CDS | 35.0% | |
| !! | CAAAGTTTTGCTGTGAATTG+TGG | - | chr7_2:67249240-67249259 | None:intergenic | 35.0% |
| ! | CAACAATATTGGGGCAATTT+TGG | - | chr7_2:67249278-67249297 | None:intergenic | 35.0% |
| TTTACTTCAATTTGGCTGCT+GGG | + | chr7_2:67249301-67249320 | Msa1070910:CDS | 35.0% | |
| ! | GTTTTCACCACAAATCACTA+TGG | - | chr7_2:67249449-67249468 | None:intergenic | 35.0% |
| ! | TCTTGGTTGCATTTTCTTGA+AGG | + | chr7_2:67249537-67249556 | Msa1070910:intron | 35.0% |
| ! | GAAGGTTCTTTTCTTGTAGA+AGG | + | chr7_2:67249743-67249762 | Msa1070910:intron | 35.0% |
| CTTTGATACTATGCAAATGC+AGG | + | chr7_2:67249826-67249845 | Msa1070910:intron | 35.0% | |
| ! | ACTTTGTTTACATGGGAGAA+GGG | - | chr7_2:67249981-67250000 | None:intergenic | 35.0% |
| ! | TACTTTGTTTACATGGGAGA+AGG | - | chr7_2:67249982-67250001 | None:intergenic | 35.0% |
| TGTAAAAGGAACCAATGACT+TGG | - | chr7_2:67248708-67248727 | None:intergenic | 35.0% | |
| TGTGTGTACCTAAAGATACA+TGG | - | chr7_2:67248879-67248898 | None:intergenic | 35.0% | |
| TCTTTCTCAATAGCTTCTTC+AGG | + | chr7_2:67249039-67249058 | Msa1070910:CDS | 35.0% | |
| CAATAGCTTCTTCAGGAAAA+CGG | + | chr7_2:67249046-67249065 | Msa1070910:CDS | 35.0% | |
| !! | CAAAGTTTTGCTGTGAATTG+TGG | - | chr7_2:67249240-67249259 | None:intergenic | 35.0% |
| ! | CAACAATATTGGGGCAATTT+TGG | - | chr7_2:67249278-67249297 | None:intergenic | 35.0% |
| TTTACTTCAATTTGGCTGCT+GGG | + | chr7_2:67249301-67249320 | Msa1070910:CDS | 35.0% | |
| ! | GTTTTCACCACAAATCACTA+TGG | - | chr7_2:67249449-67249468 | None:intergenic | 35.0% |
| ! | TCTTGGTTGCATTTTCTTGA+AGG | + | chr7_2:67249537-67249556 | Msa1070910:intron | 35.0% |
| ! | GAAGGTTCTTTTCTTGTAGA+AGG | + | chr7_2:67249743-67249762 | Msa1070910:intron | 35.0% |
| CTTTGATACTATGCAAATGC+AGG | + | chr7_2:67249826-67249845 | Msa1070910:intron | 35.0% | |
| ! | ACTTTGTTTACATGGGAGAA+GGG | - | chr7_2:67249981-67250000 | None:intergenic | 35.0% |
| ! | TACTTTGTTTACATGGGAGA+AGG | - | chr7_2:67249982-67250001 | None:intergenic | 35.0% |
| TTCAGGAAAACGGTGTTTGT+TGG | + | chr7_2:67249056-67249075 | Msa1070910:CDS | 40.0% | |
| CTACTTCTGATGTCCTACAT+TGG | - | chr7_2:67249116-67249135 | None:intergenic | 40.0% | |
| ATGTAGGACATCAGAAGTAG+TGG | + | chr7_2:67249116-67249135 | Msa1070910:CDS | 40.0% | |
| GATCAATGTGTGAATGCTTG+CGG | + | chr7_2:67249168-67249187 | Msa1070910:CDS | 40.0% | |
| ! | GGAGTTGAGAGGAATTTTGT+TGG | + | chr7_2:67249189-67249208 | Msa1070910:CDS | 40.0% |
| CAGCAGCCAAATTGAAGTAA+AGG | - | chr7_2:67249302-67249321 | None:intergenic | 40.0% | |
| CTTTACTTCAATTTGGCTGC+TGG | + | chr7_2:67249300-67249319 | Msa1070910:CDS | 40.0% | |
| TTACTTCAATTTGGCTGCTG+GGG | + | chr7_2:67249302-67249321 | Msa1070910:CDS | 40.0% | |
| AATTGGGCCATAGTGATTTG+TGG | + | chr7_2:67249439-67249458 | Msa1070910:intron | 40.0% | |
| ! | TTTTGCATCTCACAAAGGTC+AGG | - | chr7_2:67249862-67249881 | None:intergenic | 40.0% |
| ! | CTTTGTTTACATGGGAGAAG+GGG | - | chr7_2:67249980-67249999 | None:intergenic | 40.0% |
| TTCAGGAAAACGGTGTTTGT+TGG | + | chr7_2:67249056-67249075 | Msa1070910:CDS | 40.0% | |
| CTACTTCTGATGTCCTACAT+TGG | - | chr7_2:67249116-67249135 | None:intergenic | 40.0% | |
| ATGTAGGACATCAGAAGTAG+TGG | + | chr7_2:67249116-67249135 | Msa1070910:CDS | 40.0% | |
| GATCAATGTGTGAATGCTTG+CGG | + | chr7_2:67249168-67249187 | Msa1070910:CDS | 40.0% | |
| ! | GGAGTTGAGAGGAATTTTGT+TGG | + | chr7_2:67249189-67249208 | Msa1070910:CDS | 40.0% |
| CAGCAGCCAAATTGAAGTAA+AGG | - | chr7_2:67249302-67249321 | None:intergenic | 40.0% | |
| CTTTACTTCAATTTGGCTGC+TGG | + | chr7_2:67249300-67249319 | Msa1070910:CDS | 40.0% | |
| TTACTTCAATTTGGCTGCTG+GGG | + | chr7_2:67249302-67249321 | Msa1070910:CDS | 40.0% | |
| AATTGGGCCATAGTGATTTG+TGG | + | chr7_2:67249439-67249458 | Msa1070910:intron | 40.0% | |
| ! | TTTTGCATCTCACAAAGGTC+AGG | - | chr7_2:67249862-67249881 | None:intergenic | 40.0% |
| ! | CTTTGTTTACATGGGAGAAG+GGG | - | chr7_2:67249980-67249999 | None:intergenic | 40.0% |
| TGTGTGTGAGGAGTTGCAAA+AGG | + | chr7_2:67249008-67249027 | Msa1070910:CDS | 45.0% | |
| ! | GTGTTTGTTGGAGACAGAGA+AGG | + | chr7_2:67249068-67249087 | Msa1070910:CDS | 45.0% |
| TAGGACATCAGAAGTAGTGG+TGG | + | chr7_2:67249119-67249138 | Msa1070910:CDS | 45.0% | |
| ! | AGAAGTAGTGGTGGAGCAAA+TGG | + | chr7_2:67249128-67249147 | Msa1070910:CDS | 45.0% |
| ! | CGGTCTTTTGCATCTCACAA+AGG | - | chr7_2:67249867-67249886 | None:intergenic | 45.0% |
| CTTGTGACAGAGCAGAAACA+GGG | - | chr7_2:67249939-67249958 | None:intergenic | 45.0% | |
| TCTTGTGACAGAGCAGAAAC+AGG | - | chr7_2:67249940-67249959 | None:intergenic | 45.0% | |
| TGTGTGTGAGGAGTTGCAAA+AGG | + | chr7_2:67249008-67249027 | Msa1070910:CDS | 45.0% | |
| ! | GTGTTTGTTGGAGACAGAGA+AGG | + | chr7_2:67249068-67249087 | Msa1070910:CDS | 45.0% |
| TAGGACATCAGAAGTAGTGG+TGG | + | chr7_2:67249119-67249138 | Msa1070910:CDS | 45.0% | |
| ! | AGAAGTAGTGGTGGAGCAAA+TGG | + | chr7_2:67249128-67249147 | Msa1070910:CDS | 45.0% |
| ! | CGGTCTTTTGCATCTCACAA+AGG | - | chr7_2:67249867-67249886 | None:intergenic | 45.0% |
| CTTGTGACAGAGCAGAAACA+GGG | - | chr7_2:67249939-67249958 | None:intergenic | 45.0% | |
| TCTTGTGACAGAGCAGAAAC+AGG | - | chr7_2:67249940-67249959 | None:intergenic | 45.0% | |
| GACAGCTGAAGTTGTGTGTG+AGG | + | chr7_2:67248996-67249015 | Msa1070910:intron | 50.0% | |
| ! | AGTAGTGGTGGAGCAAATGG+CGG | + | chr7_2:67249131-67249150 | Msa1070910:CDS | 50.0% |
| TGAATGCTTGCGGAGTTGAG+AGG | + | chr7_2:67249178-67249197 | Msa1070910:CDS | 50.0% | |
| TTCAATTTGGCTGCTGGGGA+AGG | + | chr7_2:67249306-67249325 | Msa1070910:CDS | 50.0% | |
| ATGATCGAGCTTGTGAGCTC+TGG | + | chr7_2:67249901-67249920 | Msa1070910:CDS | 50.0% | |
| GACAGCTGAAGTTGTGTGTG+AGG | + | chr7_2:67248996-67249015 | Msa1070910:intron | 50.0% | |
| ! | AGTAGTGGTGGAGCAAATGG+CGG | + | chr7_2:67249131-67249150 | Msa1070910:CDS | 50.0% |
| TGAATGCTTGCGGAGTTGAG+AGG | + | chr7_2:67249178-67249197 | Msa1070910:CDS | 50.0% | |
| TTCAATTTGGCTGCTGGGGA+AGG | + | chr7_2:67249306-67249325 | Msa1070910:CDS | 50.0% | |
| ATGATCGAGCTTGTGAGCTC+TGG | + | chr7_2:67249901-67249920 | Msa1070910:CDS | 50.0% | |
| GTTGGAGACAGAGAAGGCAG+CGG | + | chr7_2:67249074-67249093 | Msa1070910:CDS | 55.0% | |
| ! | GTGGCGTCGAGTACCAATGT+AGG | + | chr7_2:67249100-67249119 | Msa1070910:CDS | 55.0% |
| ! | GTAGTGGTGGAGCAAATGGC+GGG | + | chr7_2:67249132-67249151 | Msa1070910:CDS | 55.0% |
| GATCATAGCGCGATGAGGGT+CGG | - | chr7_2:67249887-67249906 | None:intergenic | 55.0% | |
| GCTCGATCATAGCGCGATGA+GGG | - | chr7_2:67249891-67249910 | None:intergenic | 55.0% | |
| AGCTCGATCATAGCGCGATG+AGG | - | chr7_2:67249892-67249911 | None:intergenic | 55.0% | |
| GTTGGAGACAGAGAAGGCAG+CGG | + | chr7_2:67249074-67249093 | Msa1070910:CDS | 55.0% | |
| ! | GTGGCGTCGAGTACCAATGT+AGG | + | chr7_2:67249100-67249119 | Msa1070910:CDS | 55.0% |
| ! | GTAGTGGTGGAGCAAATGGC+GGG | + | chr7_2:67249132-67249151 | Msa1070910:CDS | 55.0% |
| GATCATAGCGCGATGAGGGT+CGG | - | chr7_2:67249887-67249906 | None:intergenic | 55.0% | |
| GCTCGATCATAGCGCGATGA+GGG | - | chr7_2:67249891-67249910 | None:intergenic | 55.0% | |
| AGCTCGATCATAGCGCGATG+AGG | - | chr7_2:67249892-67249911 | None:intergenic | 55.0% | |
| GAGACAGAGAAGGCAGCGGA+TGG | + | chr7_2:67249078-67249097 | Msa1070910:CDS | 60.0% | |
| ACAGAGAAGGCAGCGGATGG+TGG | + | chr7_2:67249081-67249100 | Msa1070910:CDS | 60.0% | |
| GACAGAGCAGAAACAGGGCC+AGG | - | chr7_2:67249934-67249953 | None:intergenic | 60.0% | |
| GAGACAGAGAAGGCAGCGGA+TGG | + | chr7_2:67249078-67249097 | Msa1070910:CDS | 60.0% | |
| ACAGAGAAGGCAGCGGATGG+TGG | + | chr7_2:67249081-67249100 | Msa1070910:CDS | 60.0% | |
| GACAGAGCAGAAACAGGGCC+AGG | - | chr7_2:67249934-67249953 | None:intergenic | 60.0% | |
| !! | GTGAGCTCTGGAGCTGCACC+TGG | + | chr7_2:67249913-67249932 | Msa1070910:CDS | 65.0% |
| !! | GTGAGCTCTGGAGCTGCACC+TGG | + | chr7_2:67249913-67249932 | Msa1070910:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 67248688 | 67250133 | 67248688 | ID=Msa1070910;Name=Msa1070910 |
| chr7_2 | mRNA | 67248688 | 67250133 | 67248688 | ID=Msa1070910-mRNA-1;Parent=Msa1070910;Name=Msa1070910-mRNA-1;_AED=0.19;_eAED=0.19;_QI=135|1|1|1|1|1|3|140|179 |
| chr7_2 | exon | 67248688 | 67248889 | 67248688 | ID=Msa1070910-mRNA-1:exon:14559;Parent=Msa1070910-mRNA-1 |
| chr7_2 | exon | 67249001 | 67249327 | 67249001 | ID=Msa1070910-mRNA-1:exon:14560;Parent=Msa1070910-mRNA-1 |
| chr7_2 | exon | 67249848 | 67250133 | 67249848 | ID=Msa1070910-mRNA-1:exon:14561;Parent=Msa1070910-mRNA-1 |
| chr7_2 | five_prime_UTR | 67248688 | 67248822 | 67248688 | ID=Msa1070910-mRNA-1:five_prime_utr;Parent=Msa1070910-mRNA-1 |
| chr7_2 | CDS | 67248823 | 67248889 | 67248823 | ID=Msa1070910-mRNA-1:cds;Parent=Msa1070910-mRNA-1 |
| chr7_2 | CDS | 67249001 | 67249327 | 67249001 | ID=Msa1070910-mRNA-1:cds;Parent=Msa1070910-mRNA-1 |
| chr7_2 | CDS | 67249848 | 67249993 | 67249848 | ID=Msa1070910-mRNA-1:cds;Parent=Msa1070910-mRNA-1 |
| chr7_2 | three_prime_UTR | 67249994 | 67250133 | 67249994 | ID=Msa1070910-mRNA-1:three_prime_utr;Parent=Msa1070910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
