Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071160 | XP_003610731.1 | 95.957 | 470 | 18 | 1 | 1 | 470 | 1 | 469 | 0.0 | 941 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071160 | G7K3N6 | 95.957 | 470 | 18 | 1 | 1 | 470 | 1 | 469 | 0.0 | 941 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0734540 | Msa1071160 | 0.822442 | 2.364183e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071160 | MtrunA17_Chr5g0394541 | 95.957 | 470 | 18 | 1 | 1 | 470 | 1 | 469 | 0.0 | 941 |
| Msa1071160 | MtrunA17_Chr1g0205321 | 49.453 | 457 | 214 | 9 | 17 | 467 | 23 | 468 | 1.70e-142 | 416 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071160 | AT1G05410.1 | 44.156 | 462 | 241 | 10 | 13 | 469 | 17 | 466 | 1.04e-115 | 348 |
| Msa1071160 | AT1G05410.2 | 42.093 | 430 | 232 | 10 | 45 | 469 | 22 | 439 | 8.54e-95 | 294 |
| Msa1071160 | AT3G22520.1 | 37.857 | 140 | 68 | 4 | 15 | 148 | 102 | 228 | 2.41e-25 | 109 |
| Msa1071160 | AT4G14840.2 | 44.860 | 107 | 52 | 3 | 9 | 114 | 61 | 161 | 2.48e-24 | 106 |
| Msa1071160 | AT4G14840.1 | 44.860 | 107 | 52 | 3 | 9 | 114 | 61 | 161 | 2.48e-24 | 106 |
| Msa1071160 | AT4G14840.3 | 44.860 | 107 | 52 | 3 | 9 | 114 | 61 | 161 | 2.48e-24 | 106 |
Find 122 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCTTTCTGTTAATTT+TGG | 0.139059 | 7_2:-67628204 | Msa1071160:five_prime_UTR |
| GGCACGGTTGGGAAAAGTTT+TGG | 0.272476 | 7_2:-67626658 | Msa1071160:CDS |
| ATTAAAACTTGTGTTGGATT+AGG | 0.280386 | 7_2:-67625567 | Msa1071160:exon |
| CAACCGTGAAATGGCTGAAT+TGG | 0.313085 | 7_2:-67625746 | Msa1071160:CDS |
| CCATTCATTGTTACTTCCAT+TGG | 0.322251 | 7_2:+67625952 | None:intergenic |
| CAGCCATTTCACGGTTGAAT+TGG | 0.326028 | 7_2:+67625752 | None:intergenic |
| AACTAAAGAATTATATAAAC+TGG | 0.330373 | 7_2:+67625500 | None:intergenic |
| CTCTCTTGGCTGGCACGGTT+GGG | 0.342261 | 7_2:-67626669 | Msa1071160:CDS |
| GGCCACAACAAGGTGACATC+TGG | 0.364480 | 7_2:-67627977 | Msa1071160:CDS |
| TCCTTCATTCTAACATTTGA+AGG | 0.370719 | 7_2:+67625925 | None:intergenic |
| GATATATGCTGTTCTGAGTC+TGG | 0.371153 | 7_2:-67626832 | Msa1071160:CDS |
| CCTTGTTGTGGCCAATTCTC+AGG | 0.371466 | 7_2:+67627987 | None:intergenic |
| TCTCTCTTGGCTGGCACGGT+TGG | 0.375624 | 7_2:-67626670 | Msa1071160:CDS |
| GCTATTCAATCGTGTTGAAT+TGG | 0.381438 | 7_2:-67626461 | Msa1071160:CDS |
| TTCACATTCATTGAAATTTG+AGG | 0.385088 | 7_2:-67625884 | Msa1071160:CDS |
| TACCATATGCTCCTGAGAAT+TGG | 0.391594 | 7_2:-67627998 | Msa1071160:CDS |
| GACATCTGGGGATGGAAAAC+TGG | 0.396808 | 7_2:-67627963 | Msa1071160:CDS |
| AAGAGAGCCGATACATTTAC+AGG | 0.401489 | 7_2:-67628065 | Msa1071160:CDS |
| TCAATAATTAAAACTTGTGT+TGG | 0.406879 | 7_2:-67625573 | Msa1071160:exon |
| GGCTCTGAATGAGTTAAGTT+CGG | 0.407878 | 7_2:+67625718 | None:intergenic |
| ACAACAAGACCGATGTTGTT+AGG | 0.411906 | 7_2:-67626930 | Msa1071160:CDS |
| CAAAGATATGGCGATGTTTG+CGG | 0.415204 | 7_2:+67627856 | None:intergenic |
| TTGAATAGCTCCTTTGCAAC+AGG | 0.419465 | 7_2:+67626475 | None:intergenic |
| GAAGTATGAAGATATGAAAA+AGG | 0.421765 | 7_2:-67625644 | Msa1071160:CDS |
| GTCGCAAGAGCTTGAATGTA+AGG | 0.433687 | 7_2:-67625827 | Msa1071160:CDS |
| CACCTTTCTGAGTACTCAAT+CGG | 0.433855 | 7_2:+67627886 | None:intergenic |
| AAAACAGTTAATTCTACTCT+TGG | 0.435460 | 7_2:-67626775 | Msa1071160:CDS |
| CCTGATTCATCTGGTGGTAC+TGG | 0.435575 | 7_2:+67628029 | None:intergenic |
| ATTGGATCGGTGCCATGATC+TGG | 0.446385 | 7_2:+67625970 | None:intergenic |
| CATCTTGATATCTTCACCAT+TGG | 0.453048 | 7_2:+67626293 | None:intergenic |
| CATATATCACAAGGCATGGC+TGG | 0.454659 | 7_2:+67626847 | None:intergenic |
| CCAGTACCACCAGATGAATC+AGG | 0.456431 | 7_2:-67628029 | Msa1071160:CDS |
| AATCCTTCGCCTGATTCATC+TGG | 0.459012 | 7_2:+67628020 | None:intergenic |
| ATGCGCACTTCGATCTCTCT+TGG | 0.462393 | 7_2:-67626683 | Msa1071160:CDS |
| AGAGCTTGCTAGCAAAGATA+TGG | 0.472024 | 7_2:+67627844 | None:intergenic |
| CCAATGGAAGTAACAATGAA+TGG | 0.472869 | 7_2:-67625952 | Msa1071160:CDS |
| GGCCAATTCTCAGGAGCATA+TGG | 0.473890 | 7_2:+67627996 | None:intergenic |
| AGAACAGATAAGACAAGAAT+CGG | 0.480440 | 7_2:-67625668 | Msa1071160:CDS |
| GATGGATGATGACAATCATA+TGG | 0.482008 | 7_2:-67626274 | Msa1071160:CDS |
| CCAAGAGAAAGAAGAAAAGA+AGG | 0.494425 | 7_2:+67627773 | None:intergenic |
| ACAGTTAATTCTACTCTTGG+CGG | 0.498684 | 7_2:-67626772 | Msa1071160:CDS |
| AAGGCATCAATATCAGCCTC+AGG | 0.499567 | 7_2:+67627792 | None:intergenic |
| TGTTGTTGAGTTGTTGCAAT+GGG | 0.500932 | 7_2:-67628095 | Msa1071160:exon |
| TTGTATGGTAGGATGCAATA+TGG | 0.501175 | 7_2:-67627013 | Msa1071160:intron |
| CATTGTTACTTCCATTGGAT+CGG | 0.503797 | 7_2:+67625957 | None:intergenic |
| ATTCCAATTCAGCCATTTCA+CGG | 0.505058 | 7_2:+67625743 | None:intergenic |
| GCCACAACAAGGTGACATCT+GGG | 0.515767 | 7_2:-67627976 | Msa1071160:CDS |
| GCTCTGAATGAGTTAAGTTC+GGG | 0.517042 | 7_2:+67625719 | None:intergenic |
| CCTTCATTCTAACATTTGAA+GGG | 0.518390 | 7_2:+67625926 | None:intergenic |
| TGACCAATTCAACCGTGAAA+TGG | 0.518597 | 7_2:-67625755 | Msa1071160:CDS |
| ACCTCGTCTCTCACGTTGAA+AGG | 0.521847 | 7_2:-67626591 | Msa1071160:CDS |
| CGCATTCCACATGGGCAACA+TGG | 0.526625 | 7_2:+67626701 | None:intergenic |
| CTTTCCTTTCTCTGATAGCA+CGG | 0.526977 | 7_2:+67625689 | None:intergenic |
| CAAAATTAACAGAAAGAAAG+AGG | 0.527447 | 7_2:+67628205 | None:intergenic |
| CCCCAGATGTCACCTTGTTG+TGG | 0.527527 | 7_2:+67627975 | None:intergenic |
| CCCTTCAAATGTTAGAATGA+AGG | 0.531357 | 7_2:-67625926 | Msa1071160:CDS |
| GCACTTCGATCTCTCTTGGC+TGG | 0.534919 | 7_2:-67626679 | Msa1071160:CDS |
| CAGTTAATTCTACTCTTGGC+GGG | 0.535095 | 7_2:-67626771 | Msa1071160:CDS |
| TCGATCTCTCTTGGCTGGCA+CGG | 0.535656 | 7_2:-67626674 | Msa1071160:CDS |
| TAATCAGGCTTACCAGATCA+TGG | 0.538936 | 7_2:-67625982 | Msa1071160:intron |
| AAAGTGCGACAGTCTGAAGT+TGG | 0.541871 | 7_2:-67626890 | Msa1071160:CDS |
| AATCATATGGTTCATTCTGA+AGG | 0.544164 | 7_2:-67626261 | Msa1071160:intron |
| TTCTCTGATAGCACGGAACA+AGG | 0.544391 | 7_2:+67625696 | None:intergenic |
| AGATCATGGCACCGATCCAA+TGG | 0.545091 | 7_2:-67625968 | Msa1071160:CDS |
| ATCGAAGTGCGCATTCCACA+TGG | 0.546744 | 7_2:+67626692 | None:intergenic |
| TCTCTTAATGCTGCTTCCAA+CGG | 0.553352 | 7_2:-67627741 | Msa1071160:intron |
| ACCTTTCTGAGTACTCAATC+GGG | 0.556323 | 7_2:+67627887 | None:intergenic |
| TATCATTGTCGGCGATGTGA+TGG | 0.560383 | 7_2:-67626622 | Msa1071160:CDS |
| AGAGCTTGAATGTAAGGTGG+TGG | 0.566528 | 7_2:-67625821 | Msa1071160:CDS |
| TGAAGAGGTACCGCAGCTAT+CGG | 0.567027 | 7_2:+67626988 | None:intergenic |
| ATTCATCTGGTGGTACTGGA+TGG | 0.569457 | 7_2:+67628033 | None:intergenic |
| TTCAAAGAAACCTGTTGCAA+AGG | 0.576303 | 7_2:-67626485 | Msa1071160:CDS |
| TGTTCCGTGCTATCAGAGAA+AGG | 0.577772 | 7_2:-67625693 | Msa1071160:CDS |
| CCTTCGCCTGATTCATCTGG+TGG | 0.581849 | 7_2:+67628023 | None:intergenic |
| GATATGGCGATGTTTGCGGC+TGG | 0.582818 | 7_2:+67627860 | None:intergenic |
| AGAGTAGCAGCTATATGCAA+TGG | 0.584874 | 7_2:+67628237 | None:intergenic |
| AGTCATTCCTGTAAATGTAT+CGG | 0.588699 | 7_2:+67628058 | None:intergenic |
| GACATCAAAAGATATTTCAA+AGG | 0.595328 | 7_2:-67625602 | Msa1071160:CDS |
| ATCAACGGTATCTGTTGAAG+AGG | 0.596836 | 7_2:+67626973 | None:intergenic |
| ACAGCATATATCACAAGGCA+TGG | 0.598800 | 7_2:+67626843 | None:intergenic |
| TGTTGGATTAGGACTCGCGT+TGG | 0.599230 | 7_2:-67625556 | Msa1071160:three_prime_UTR |
| CTTGGTGCTTGTCTCTTGCG+TGG | 0.601225 | 7_2:-67626508 | Msa1071160:CDS |
| GGTAAAAGACTTCATAACAA+TGG | 0.605018 | 7_2:-67627942 | Msa1071160:CDS |
| CGATTGAGTACTCAGAAAGG+TGG | 0.606365 | 7_2:-67627885 | Msa1071160:CDS |
| TAGATGCTGAGTATCATTGT+CGG | 0.609229 | 7_2:-67626633 | Msa1071160:CDS |
| TTCAAATGTTAGAATGAAGG+AGG | 0.609345 | 7_2:-67625923 | Msa1071160:CDS |
| TGTTGAATTGGCCATCGCAA+AGG | 0.609931 | 7_2:-67626449 | Msa1071160:intron |
| CCTGAGAATTGGCCACAACA+AGG | 0.611861 | 7_2:-67627987 | Msa1071160:CDS |
| GCCTTTCAACGTGAGAGACG+AGG | 0.612135 | 7_2:+67626590 | None:intergenic |
| TCCCGATTGAGTACTCAGAA+AGG | 0.618391 | 7_2:-67627888 | Msa1071160:CDS |
| TGCGGAGTAAATGTCGGTGA+GGG | 0.619525 | 7_2:-67626733 | Msa1071160:CDS |
| GGCTTTGCACCTAACAACAT+CGG | 0.621552 | 7_2:+67626921 | None:intergenic |
| TTGTTGTTGAGTTGTTGCAA+TGG | 0.622317 | 7_2:-67628096 | Msa1071160:exon |
| ATTGTCGGCGATGTGATGGA+AGG | 0.624076 | 7_2:-67626618 | Msa1071160:CDS |
| TCTCTGATAGCACGGAACAA+GGG | 0.625648 | 7_2:+67625697 | None:intergenic |
| AACAAGGTGACATCTGGGGA+TGG | 0.625901 | 7_2:-67627971 | Msa1071160:CDS |
| CCACCAGATGAATCAGGCGA+AGG | 0.627232 | 7_2:-67628023 | Msa1071160:CDS |
| TTGGAAGCAGCATTAAGAGA+AGG | 0.628086 | 7_2:+67627744 | None:intergenic |
| GAGTCTGATTCTATTATCAA+CGG | 0.630254 | 7_2:+67626958 | None:intergenic |
| AGGCATCAATATCAGCCTCA+GGG | 0.632221 | 7_2:+67627793 | None:intergenic |
| GGCTGACATTGATGACGTCA+TGG | 0.633984 | 7_2:-67625863 | Msa1071160:CDS |
| ATCAAGTGCGGAGTAAATGT+CGG | 0.635795 | 7_2:-67626739 | Msa1071160:CDS |
| TTTCTGAGTACTCAATCGGG+AGG | 0.641970 | 7_2:+67627890 | None:intergenic |
| CAGCTAAAATGTGTGTCCAA+TGG | 0.642867 | 7_2:-67626309 | Msa1071160:CDS |
| TTCTGAGTACTCAATCGGGA+GGG | 0.647403 | 7_2:+67627891 | None:intergenic |
| ATGCGGCCATGTTGCCCATG+TGG | 0.650042 | 7_2:-67626707 | Msa1071160:CDS |
| GTGCGGAGTAAATGTCGGTG+AGG | 0.654472 | 7_2:-67626734 | Msa1071160:CDS |
| CAATATGGTGCCGATAGCTG+CGG | 0.663483 | 7_2:-67626998 | Msa1071160:CDS |
| ATTGCAACAACTCAACAACA+AGG | 0.667832 | 7_2:+67628098 | None:intergenic |
| TCGAAGTGCGCATTCCACAT+GGG | 0.671350 | 7_2:+67626693 | None:intergenic |
| CAATGGTGAAGATATCAAGA+TGG | 0.671682 | 7_2:-67626292 | Msa1071160:CDS |
| TTGCAACAACTCAACAACAA+GGG | 0.674417 | 7_2:+67628099 | None:intergenic |
| AATGTCGGTGAGGGAATATG+CGG | 0.682325 | 7_2:-67626724 | Msa1071160:CDS |
| CCACAACAAGGTGACATCTG+GGG | 0.683634 | 7_2:-67627975 | Msa1071160:CDS |
| GCAAGAGCTTGAATGTAAGG+TGG | 0.686662 | 7_2:-67625824 | Msa1071160:CDS |
| AATTAACAGAAAGAAAGAGG+TGG | 0.690117 | 7_2:+67628208 | None:intergenic |
| GGGTACAGTTATATCAAGTG+CGG | 0.691983 | 7_2:-67626751 | Msa1071160:CDS |
| TCAGAACAGCATATATCACA+AGG | 0.698256 | 7_2:+67626838 | None:intergenic |
| CACGCAAGAGACAAGCACCA+AGG | 0.715959 | 7_2:+67626509 | None:intergenic |
| TGACATTGATGACGTCATGG+AGG | 0.717278 | 7_2:-67625860 | Msa1071160:CDS |
| CATCAAAGCTACTTTCCCTG+AGG | 0.723026 | 7_2:-67627808 | Msa1071160:CDS |
| TTCAACGTGAGAGACGAGGT+CGG | 0.728059 | 7_2:+67626594 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTGATTACATTTATA+GGG | - | chr7_2:67626242-67626261 | Msa1071160:intron | 10.0% |
| !!! | TTTTAAAATTCATTGAATAA+CGG | + | chr7_2:67626390-67626409 | None:intergenic | 10.0% |
| !!! | GAAATTTTGATTACATTTAT+AGG | - | chr7_2:67626241-67626260 | Msa1071160:intron | 15.0% |
| !! | AACTAAAGAATTATATAAAC+TGG | + | chr7_2:67628145-67628164 | None:intergenic | 15.0% |
| !! | AATCTAAAAAGTGAATTTGT+TGG | + | chr7_2:67626321-67626340 | None:intergenic | 20.0% |
| !! | ATCTAGTATATGTTATAGAA+CGG | + | chr7_2:67626363-67626382 | None:intergenic | 20.0% |
| !! | GCATCTATAACAATATATAA+AGG | + | chr7_2:67626480-67626499 | None:intergenic | 20.0% |
| !!! | AAGAAAAAAAAGTCTTTTGT+CGG | + | chr7_2:67626534-67626553 | None:intergenic | 20.0% |
| !!! | TTGTTGTTGTTTTAATTGTA+TGG | - | chr7_2:67626614-67626633 | Msa1071160:CDS | 20.0% |
| !! | TAAAACTGAATTTACAAGAT+CGG | + | chr7_2:67627602-67627621 | None:intergenic | 20.0% |
| !! | AATATTCAATCCTAATACAA+AGG | + | chr7_2:67627631-67627650 | None:intergenic | 20.0% |
| !! | TCAATAATTAAAACTTGTGT+TGG | - | chr7_2:67628069-67628088 | Msa1071160:CDS | 20.0% |
| ! | CAAAATTAACAGAAAGAAAG+AGG | + | chr7_2:67625440-67625459 | None:intergenic | 25.0% |
| !! | CTCTTTCTTTCTGTTAATTT+TGG | - | chr7_2:67625438-67625457 | Msa1071160:three_prime_UTR | 25.0% |
| ! | TTCATTTATATCTATTTGCG+AGG | - | chr7_2:67625998-67626017 | Msa1071160:intron | 25.0% |
| !!! | TGTTGTTTTAATTGTATGGT+AGG | - | chr7_2:67626618-67626637 | Msa1071160:CDS | 25.0% |
| ! | AAAACAGTTAATTCTACTCT+TGG | - | chr7_2:67626867-67626886 | Msa1071160:CDS | 25.0% |
| !!! | GTATTTTTCAACTTGAGATT+AGG | - | chr7_2:67627215-67627234 | Msa1071160:intron | 25.0% |
| !! | ATCTTGTTTGTAATTAGTGT+AGG | - | chr7_2:67627255-67627274 | Msa1071160:intron | 25.0% |
| ! | CTGATACAAAGTTATCAATT+TGG | + | chr7_2:67627316-67627335 | None:intergenic | 25.0% |
| ! | TTTATTTGCACCTTTGTATT+AGG | - | chr7_2:67627618-67627637 | Msa1071160:intron | 25.0% |
| !! | AATATTTTGTGCTCATAATC+AGG | - | chr7_2:67627645-67627664 | Msa1071160:intron | 25.0% |
| ! | TTCACATTCATTGAAATTTG+AGG | - | chr7_2:67627758-67627777 | Msa1071160:CDS | 25.0% |
| ! | GAAGTATGAAGATATGAAAA+AGG | - | chr7_2:67627998-67628017 | Msa1071160:CDS | 25.0% |
| ! | TATGAAGATATGAAAAAGGT+GGG | - | chr7_2:67628002-67628021 | Msa1071160:CDS | 25.0% |
| ! | GACATCAAAAGATATTTCAA+AGG | - | chr7_2:67628040-67628059 | Msa1071160:CDS | 25.0% |
| ! | ATTAAAACTTGTGTTGGATT+AGG | - | chr7_2:67628075-67628094 | Msa1071160:CDS | 25.0% |
| AATTAACAGAAAGAAAGAGG+TGG | + | chr7_2:67625437-67625456 | None:intergenic | 30.0% | |
| AGTCATTCCTGTAAATGTAT+CGG | + | chr7_2:67625587-67625606 | None:intergenic | 30.0% | |
| GGTAAAAGACTTCATAACAA+TGG | - | chr7_2:67625700-67625719 | Msa1071160:CDS | 30.0% | |
| ! | ATTTCAATGTGCGATTTTTG+TGG | - | chr7_2:67626082-67626101 | Msa1071160:intron | 30.0% |
| ATATTAAGTAGCATTCAGAC+CGG | - | chr7_2:67626163-67626182 | Msa1071160:intron | 30.0% | |
| TGTCGGATATAAAACATACA+TGG | + | chr7_2:67626517-67626536 | None:intergenic | 30.0% | |
| !!! | AAAGACTTTTTTTTCTTCCG+TGG | - | chr7_2:67626537-67626556 | Msa1071160:CDS | 30.0% |
| !!! | AAGACTTTTTTTTCTTCCGT+GGG | - | chr7_2:67626538-67626557 | Msa1071160:CDS | 30.0% |
| GAGTCTGATTCTATTATCAA+CGG | + | chr7_2:67626687-67626706 | None:intergenic | 30.0% | |
| !!! | AAGAAGAAAGTTTTAGACCT+TGG | - | chr7_2:67627116-67627135 | Msa1071160:intron | 30.0% |
| !! | TTGACTTGCACATATTGTAA+AGG | - | chr7_2:67627280-67627299 | Msa1071160:intron | 30.0% |
| AATCATATGGTTCATTCTGA+AGG | - | chr7_2:67627381-67627400 | Msa1071160:intron | 30.0% | |
| CCTTCATTCTAACATTTGAA+GGG | + | chr7_2:67627719-67627738 | None:intergenic | 30.0% | |
| TCCTTCATTCTAACATTTGA+AGG | + | chr7_2:67627720-67627739 | None:intergenic | 30.0% | |
| TTCAAATGTTAGAATGAAGG+AGG | - | chr7_2:67627719-67627738 | Msa1071160:intron | 30.0% | |
| AGAACAGATAAGACAAGAAT+CGG | - | chr7_2:67627974-67627993 | Msa1071160:CDS | 30.0% | |
| GTATGAAGATATGAAAAAGG+TGG | - | chr7_2:67628001-67628020 | Msa1071160:CDS | 30.0% | |
| TTGCAACAACTCAACAACAA+GGG | + | chr7_2:67625546-67625565 | None:intergenic | 35.0% | |
| ATTGCAACAACTCAACAACA+AGG | + | chr7_2:67625547-67625566 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGAGTTGTTGCAA+TGG | - | chr7_2:67625546-67625565 | Msa1071160:three_prime_UTR | 35.0% |
| ! | TGTTGTTGAGTTGTTGCAAT+GGG | - | chr7_2:67625547-67625566 | Msa1071160:three_prime_UTR | 35.0% |
| CCAAGAGAAAGAAGAAAAGA+AGG | + | chr7_2:67625872-67625891 | None:intergenic | 35.0% | |
| ! | CCTTCTTTTCTTCTTTCTCT+TGG | - | chr7_2:67625869-67625888 | Msa1071160:CDS | 35.0% |
| ! | TCTTTTCTTCTTTCTCTTGG+AGG | - | chr7_2:67625872-67625891 | Msa1071160:CDS | 35.0% |
| !! | AAATAAAAGTACCGTACCGT+TGG | + | chr7_2:67625920-67625939 | None:intergenic | 35.0% |
| ACCAGCGAGACTATTATAAT+TGG | - | chr7_2:67626433-67626452 | Msa1071160:intron | 35.0% | |
| TCCAATTATAATAGTCTCGC+TGG | + | chr7_2:67626437-67626456 | None:intergenic | 35.0% | |
| GCTAAATCTACATTTACCCA+CGG | + | chr7_2:67626557-67626576 | None:intergenic | 35.0% | |
| TTGTATGGTAGGATGCAATA+TGG | - | chr7_2:67626629-67626648 | Msa1071160:CDS | 35.0% | |
| !! | ACTGTCGCACTTTTTATTTC+TGG | + | chr7_2:67626745-67626764 | None:intergenic | 35.0% |
| TCAGAACAGCATATATCACA+AGG | + | chr7_2:67626807-67626826 | None:intergenic | 35.0% | |
| ! | TGTTTTGCAACAAAGAATGC+AGG | + | chr7_2:67626853-67626872 | None:intergenic | 35.0% |
| ACAGTTAATTCTACTCTTGG+CGG | - | chr7_2:67626870-67626889 | Msa1071160:CDS | 35.0% | |
| TAGATGCTGAGTATCATTGT+CGG | - | chr7_2:67627009-67627028 | Msa1071160:intron | 35.0% | |
| TTCAAAGAAACCTGTTGCAA+AGG | - | chr7_2:67627157-67627176 | Msa1071160:intron | 35.0% | |
| GCTATTCAATCGTGTTGAAT+TGG | - | chr7_2:67627181-67627200 | Msa1071160:intron | 35.0% | |
| GTTGAAAAATACCTTTGCGA+TGG | + | chr7_2:67627207-67627226 | None:intergenic | 35.0% | |
| CATCTTGATATCTTCACCAT+TGG | + | chr7_2:67627352-67627371 | None:intergenic | 35.0% | |
| CAATGGTGAAGATATCAAGA+TGG | - | chr7_2:67627350-67627369 | Msa1071160:intron | 35.0% | |
| GATGGATGATGACAATCATA+TGG | - | chr7_2:67627368-67627387 | Msa1071160:intron | 35.0% | |
| TAGCAAAAGCTAGACAACTA+GGG | + | chr7_2:67627425-67627444 | None:intergenic | 35.0% | |
| ATAGCAATGTTGCATGCTTA+TGG | - | chr7_2:67627469-67627488 | Msa1071160:intron | 35.0% | |
| ! | CTGCATATATGTCAGCTTTT+TGG | - | chr7_2:67627502-67627521 | Msa1071160:intron | 35.0% |
| CACAGAAGTGAAGGTTATAA+AGG | + | chr7_2:67627566-67627585 | None:intergenic | 35.0% | |
| ! | CATTGTTACTTCCATTGGAT+CGG | + | chr7_2:67627688-67627707 | None:intergenic | 35.0% |
| ! | CCATTCATTGTTACTTCCAT+TGG | + | chr7_2:67627693-67627712 | None:intergenic | 35.0% |
| CCAATGGAAGTAACAATGAA+TGG | - | chr7_2:67627690-67627709 | Msa1071160:intron | 35.0% | |
| CCCTTCAAATGTTAGAATGA+AGG | - | chr7_2:67627716-67627735 | Msa1071160:intron | 35.0% | |
| ATTCCAATTCAGCCATTTCA+CGG | + | chr7_2:67627902-67627921 | None:intergenic | 35.0% | |
| AGAGTAGCAGCTATATGCAA+TGG | + | chr7_2:67625408-67625427 | None:intergenic | 40.0% | |
| AAGAGAGCCGATACATTTAC+AGG | - | chr7_2:67625577-67625596 | Msa1071160:exon | 40.0% | |
| TACCATATGCTCCTGAGAAT+TGG | - | chr7_2:67625644-67625663 | Msa1071160:CDS | 40.0% | |
| ACCTTTCTGAGTACTCAATC+GGG | + | chr7_2:67625758-67625777 | None:intergenic | 40.0% | |
| CACCTTTCTGAGTACTCAAT+CGG | + | chr7_2:67625759-67625778 | None:intergenic | 40.0% | |
| CAAAGATATGGCGATGTTTG+CGG | + | chr7_2:67625789-67625808 | None:intergenic | 40.0% | |
| !! | AGAGCTTGCTAGCAAAGATA+TGG | + | chr7_2:67625801-67625820 | None:intergenic | 40.0% |
| TTGGAAGCAGCATTAAGAGA+AGG | + | chr7_2:67625901-67625920 | None:intergenic | 40.0% | |
| ! | TCTCTTAATGCTGCTTCCAA+CGG | - | chr7_2:67625901-67625920 | Msa1071160:CDS | 40.0% |
| AAGAGCTGACAAATTGATGC+CGG | + | chr7_2:67626185-67626204 | None:intergenic | 40.0% | |
| ATCAACGGTATCTGTTGAAG+AGG | + | chr7_2:67626672-67626691 | None:intergenic | 40.0% | |
| ACAACAAGACCGATGTTGTT+AGG | - | chr7_2:67626712-67626731 | Msa1071160:CDS | 40.0% | |
| ACAGCATATATCACAAGGCA+TGG | + | chr7_2:67626802-67626821 | None:intergenic | 40.0% | |
| ! | GATATATGCTGTTCTGAGTC+TGG | - | chr7_2:67626810-67626829 | Msa1071160:CDS | 40.0% |
| CAGTTAATTCTACTCTTGGC+GGG | - | chr7_2:67626871-67626890 | Msa1071160:CDS | 40.0% | |
| GGGTACAGTTATATCAAGTG+CGG | - | chr7_2:67626891-67626910 | Msa1071160:CDS | 40.0% | |
| ATCAAGTGCGGAGTAAATGT+CGG | - | chr7_2:67626903-67626922 | Msa1071160:CDS | 40.0% | |
| TTGAATAGCTCCTTTGCAAC+AGG | + | chr7_2:67627170-67627189 | None:intergenic | 40.0% | |
| CAGCTAAAATGTGTGTCCAA+TGG | - | chr7_2:67627333-67627352 | Msa1071160:intron | 40.0% | |
| GTAGCAAAAGCTAGACAACT+AGG | + | chr7_2:67627426-67627445 | None:intergenic | 40.0% | |
| TATAGAAGCTGTGATGTGAG+CGG | + | chr7_2:67627452-67627471 | None:intergenic | 40.0% | |
| ATAACCTTCACTTCTGTGAC+TGG | - | chr7_2:67627568-67627587 | Msa1071160:intron | 40.0% | |
| TAATCAGGCTTACCAGATCA+TGG | - | chr7_2:67627660-67627679 | Msa1071160:intron | 40.0% | |
| TGACCAATTCAACCGTGAAA+TGG | - | chr7_2:67627887-67627906 | Msa1071160:CDS | 40.0% | |
| ! | GCTCTGAATGAGTTAAGTTC+GGG | + | chr7_2:67627926-67627945 | None:intergenic | 40.0% |
| !! | GGCTCTGAATGAGTTAAGTT+CGG | + | chr7_2:67627927-67627946 | None:intergenic | 40.0% |
| CTTTCCTTTCTCTGATAGCA+CGG | + | chr7_2:67627956-67627975 | None:intergenic | 40.0% | |
| ! | ATTCATCTGGTGGTACTGGA+TGG | + | chr7_2:67625612-67625631 | None:intergenic | 45.0% |
| AATCCTTCGCCTGATTCATC+TGG | + | chr7_2:67625625-67625644 | None:intergenic | 45.0% | |
| TTCTGAGTACTCAATCGGGA+GGG | + | chr7_2:67625754-67625773 | None:intergenic | 45.0% | |
| TTTCTGAGTACTCAATCGGG+AGG | + | chr7_2:67625755-67625774 | None:intergenic | 45.0% | |
| TCCCGATTGAGTACTCAGAA+AGG | - | chr7_2:67625754-67625773 | Msa1071160:CDS | 45.0% | |
| CGATTGAGTACTCAGAAAGG+TGG | - | chr7_2:67625757-67625776 | Msa1071160:CDS | 45.0% | |
| ! | CATCAAAGCTACTTTCCCTG+AGG | - | chr7_2:67625834-67625853 | Msa1071160:CDS | 45.0% |
| AGGCATCAATATCAGCCTCA+GGG | + | chr7_2:67625852-67625871 | None:intergenic | 45.0% | |
| ! | AAGGCATCAATATCAGCCTC+AGG | + | chr7_2:67625853-67625872 | None:intergenic | 45.0% |
| ! | TAATGCTGCTTCCAACGGTA+CGG | - | chr7_2:67625906-67625925 | Msa1071160:CDS | 45.0% |
| GGCTTTGCACCTAACAACAT+CGG | + | chr7_2:67626724-67626743 | None:intergenic | 45.0% | |
| ! | AAAGTGCGACAGTCTGAAGT+TGG | - | chr7_2:67626752-67626771 | Msa1071160:CDS | 45.0% |
| CATATATCACAAGGCATGGC+TGG | + | chr7_2:67626798-67626817 | None:intergenic | 45.0% | |
| AATGTCGGTGAGGGAATATG+CGG | - | chr7_2:67626918-67626937 | Msa1071160:CDS | 45.0% | |
| TATCATTGTCGGCGATGTGA+TGG | - | chr7_2:67627020-67627039 | Msa1071160:intron | 45.0% | |
| TGTTGAATTGGCCATCGCAA+AGG | - | chr7_2:67627193-67627212 | Msa1071160:intron | 45.0% | |
| AGACAACTAGGGAGTAAGAG+AGG | + | chr7_2:67627414-67627433 | None:intergenic | 45.0% | |
| GCAATGTTGCATGCTTATGG+AGG | - | chr7_2:67627472-67627491 | Msa1071160:intron | 45.0% | |
| !! | TGACATTGATGACGTCATGG+AGG | - | chr7_2:67627782-67627801 | Msa1071160:CDS | 45.0% |
| GTCGCAAGAGCTTGAATGTA+AGG | - | chr7_2:67627815-67627834 | Msa1071160:CDS | 45.0% | |
| GCAAGAGCTTGAATGTAAGG+TGG | - | chr7_2:67627818-67627837 | Msa1071160:CDS | 45.0% | |
| AGAGCTTGAATGTAAGGTGG+TGG | - | chr7_2:67627821-67627840 | Msa1071160:CDS | 45.0% | |
| CAGCCATTTCACGGTTGAAT+TGG | + | chr7_2:67627893-67627912 | None:intergenic | 45.0% | |
| CAACCGTGAAATGGCTGAAT+TGG | - | chr7_2:67627896-67627915 | Msa1071160:CDS | 45.0% | |
| TCTCTGATAGCACGGAACAA+GGG | + | chr7_2:67627948-67627967 | None:intergenic | 45.0% | |
| TTCTCTGATAGCACGGAACA+AGG | + | chr7_2:67627949-67627968 | None:intergenic | 45.0% | |
| TGTTCCGTGCTATCAGAGAA+AGG | - | chr7_2:67627949-67627968 | Msa1071160:CDS | 45.0% | |
| GATATGAAAAAGGTGGGCAG+TGG | - | chr7_2:67628008-67628027 | Msa1071160:CDS | 45.0% | |
| CCTGATTCATCTGGTGGTAC+TGG | + | chr7_2:67625616-67625635 | None:intergenic | 50.0% | |
| CCAGTACCACCAGATGAATC+AGG | - | chr7_2:67625613-67625632 | Msa1071160:CDS | 50.0% | |
| ! | GGCCAATTCTCAGGAGCATA+TGG | + | chr7_2:67625649-67625668 | None:intergenic | 50.0% |
| ! | CCTTGTTGTGGCCAATTCTC+AGG | + | chr7_2:67625658-67625677 | None:intergenic | 50.0% |
| CCTGAGAATTGGCCACAACA+AGG | - | chr7_2:67625655-67625674 | Msa1071160:CDS | 50.0% | |
| GCCACAACAAGGTGACATCT+GGG | - | chr7_2:67625666-67625685 | Msa1071160:CDS | 50.0% | |
| CCACAACAAGGTGACATCTG+GGG | - | chr7_2:67625667-67625686 | Msa1071160:CDS | 50.0% | |
| AACAAGGTGACATCTGGGGA+TGG | - | chr7_2:67625671-67625690 | Msa1071160:CDS | 50.0% | |
| GACATCTGGGGATGGAAAAC+TGG | - | chr7_2:67625679-67625698 | Msa1071160:CDS | 50.0% | |
| !! | CAATATGGTGCCGATAGCTG+CGG | - | chr7_2:67626644-67626663 | Msa1071160:CDS | 50.0% |
| !! | TGAAGAGGTACCGCAGCTAT+CGG | + | chr7_2:67626657-67626676 | None:intergenic | 50.0% |
| TGCGGAGTAAATGTCGGTGA+GGG | - | chr7_2:67626909-67626928 | Msa1071160:CDS | 50.0% | |
| TCGAAGTGCGCATTCCACAT+GGG | + | chr7_2:67626952-67626971 | None:intergenic | 50.0% | |
| ATCGAAGTGCGCATTCCACA+TGG | + | chr7_2:67626953-67626972 | None:intergenic | 50.0% | |
| ATGCGCACTTCGATCTCTCT+TGG | - | chr7_2:67626959-67626978 | Msa1071160:CDS | 50.0% | |
| ! | GGCACGGTTGGGAAAAGTTT+TGG | - | chr7_2:67626984-67627003 | Msa1071160:CDS | 50.0% |
| ! | ATTGTCGGCGATGTGATGGA+AGG | - | chr7_2:67627024-67627043 | Msa1071160:intron | 50.0% |
| TTCAACGTGAGAGACGAGGT+CGG | + | chr7_2:67627051-67627070 | None:intergenic | 50.0% | |
| ACCTCGTCTCTCACGTTGAA+AGG | - | chr7_2:67627051-67627070 | Msa1071160:intron | 50.0% | |
| GTTGCCAGTCACAGAAGTGA+AGG | + | chr7_2:67627575-67627594 | None:intergenic | 50.0% | |
| !! | ATTGGATCGGTGCCATGATC+TGG | + | chr7_2:67627675-67627694 | None:intergenic | 50.0% |
| !! | AGATCATGGCACCGATCCAA+TGG | - | chr7_2:67627674-67627693 | Msa1071160:intron | 50.0% |
| !! | GGCTGACATTGATGACGTCA+TGG | - | chr7_2:67627779-67627798 | Msa1071160:CDS | 50.0% |
| !!! | AGGTGGGCAGTGGTTTTAGT+AGG | - | chr7_2:67628018-67628037 | Msa1071160:CDS | 50.0% |
| ! | TGTTGGATTAGGACTCGCGT+TGG | - | chr7_2:67628086-67628105 | Msa1071160:exon | 50.0% |
| CCTTCGCCTGATTCATCTGG+TGG | + | chr7_2:67625622-67625641 | None:intergenic | 55.0% | |
| CCACCAGATGAATCAGGCGA+AGG | - | chr7_2:67625619-67625638 | Msa1071160:CDS | 55.0% | |
| GGCCACAACAAGGTGACATC+TGG | - | chr7_2:67625665-67625684 | Msa1071160:CDS | 55.0% | |
| CCCCAGATGTCACCTTGTTG+TGG | + | chr7_2:67625670-67625689 | None:intergenic | 55.0% | |
| GATATGGCGATGTTTGCGGC+TGG | + | chr7_2:67625785-67625804 | None:intergenic | 55.0% | |
| GTGCGGAGTAAATGTCGGTG+AGG | - | chr7_2:67626908-67626927 | Msa1071160:CDS | 55.0% | |
| CGCATTCCACATGGGCAACA+TGG | + | chr7_2:67626944-67626963 | None:intergenic | 55.0% | |
| GCACTTCGATCTCTCTTGGC+TGG | - | chr7_2:67626963-67626982 | Msa1071160:CDS | 55.0% | |
| TCGATCTCTCTTGGCTGGCA+CGG | - | chr7_2:67626968-67626987 | Msa1071160:CDS | 55.0% | |
| GCCTTTCAACGTGAGAGACG+AGG | + | chr7_2:67627055-67627074 | None:intergenic | 55.0% | |
| CACGCAAGAGACAAGCACCA+AGG | + | chr7_2:67627136-67627155 | None:intergenic | 55.0% | |
| !! | CTTGGTGCTTGTCTCTTGCG+TGG | - | chr7_2:67627134-67627153 | Msa1071160:intron | 55.0% |
| ATGCGGCCATGTTGCCCATG+TGG | - | chr7_2:67626935-67626954 | Msa1071160:CDS | 60.0% | |
| TCTCTCTTGGCTGGCACGGT+TGG | - | chr7_2:67626972-67626991 | Msa1071160:CDS | 60.0% | |
| CTCTCTTGGCTGGCACGGTT+GGG | - | chr7_2:67626973-67626992 | Msa1071160:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 67625386 | 67628278 | 67625386 | ID=Msa1071160;Name=Msa1071160 |
| chr7_2 | mRNA | 67625386 | 67628278 | 67625386 | ID=Msa1071160-mRNA-1;Parent=Msa1071160;Name=Msa1071160-mRNA-1;_AED=0.03;_eAED=0.03;_QI=157|1|1|1|0.75|0.6|5|199|470 |
| chr7_2 | exon | 67625386 | 67625997 | 67625386 | ID=Msa1071160-mRNA-1:exon:14677;Parent=Msa1071160-mRNA-1 |
| chr7_2 | exon | 67626262 | 67626328 | 67626262 | ID=Msa1071160-mRNA-1:exon:14676;Parent=Msa1071160-mRNA-1 |
| chr7_2 | exon | 67626450 | 67627024 | 67626450 | ID=Msa1071160-mRNA-1:exon:14675;Parent=Msa1071160-mRNA-1 |
| chr7_2 | exon | 67627742 | 67628174 | 67627742 | ID=Msa1071160-mRNA-1:exon:14674;Parent=Msa1071160-mRNA-1 |
| chr7_2 | exon | 67628197 | 67628278 | 67628197 | ID=Msa1071160-mRNA-1:exon:14673;Parent=Msa1071160-mRNA-1 |
| chr7_2 | five_prime_UTR | 67628197 | 67628278 | 67628197 | ID=Msa1071160-mRNA-1:five_prime_utr;Parent=Msa1071160-mRNA-1 |
| chr7_2 | five_prime_UTR | 67628100 | 67628174 | 67628100 | ID=Msa1071160-mRNA-1:five_prime_utr;Parent=Msa1071160-mRNA-1 |
| chr7_2 | CDS | 67627742 | 67628099 | 67627742 | ID=Msa1071160-mRNA-1:cds;Parent=Msa1071160-mRNA-1 |
| chr7_2 | CDS | 67626450 | 67627024 | 67626450 | ID=Msa1071160-mRNA-1:cds;Parent=Msa1071160-mRNA-1 |
| chr7_2 | CDS | 67626262 | 67626328 | 67626262 | ID=Msa1071160-mRNA-1:cds;Parent=Msa1071160-mRNA-1 |
| chr7_2 | CDS | 67625585 | 67625997 | 67625585 | ID=Msa1071160-mRNA-1:cds;Parent=Msa1071160-mRNA-1 |
| chr7_2 | three_prime_UTR | 67625386 | 67625584 | 67625386 | ID=Msa1071160-mRNA-1:three_prime_utr;Parent=Msa1071160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
