AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0734540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734540 MtrunA17_Chr5g0431151 99.500 800 4 0 1 800 285 1084 0.0 1664
Msa0734540 MtrunA17_Chr5g0431171 98.750 800 10 0 1 800 284 1083 0.0 1652
Msa0734540 MtrunA17_Chr0c01g0489601 85.061 743 66 5 1 743 1 698 0.0 1248
Msa0734540 MtrunA17_Chr8g0352371 40.761 184 101 2 210 393 6 181 1.87e-34 140
Msa0734540 MtrunA17_Chr4g0074481 32.850 207 111 7 203 392 37 232 1.18e-22 102
Msa0734540 MtrunA17_Chr5g0444711 28.235 170 107 5 179 346 59 215 5.10e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734540 AT5G06460.1 83.479 799 132 0 1 799 278 1076 0.0 1424
Msa0734540 AT2G30110.1 83.625 800 131 0 1 800 281 1080 0.0 1412
Msa0734540 AT2G21470.1 39.474 190 107 2 204 393 4 185 3.35e-33 136
Msa0734540 AT2G21470.3 39.474 190 107 2 204 393 4 185 3.45e-33 136
Msa0734540 AT2G21470.2 39.474 190 107 2 204 393 4 185 6.00e-33 136
Msa0734540 AT5G19180.2 30.769 208 116 7 203 393 36 232 2.00e-21 98.2
Msa0734540 AT5G19180.1 31.100 209 116 7 201 392 34 231 2.30e-21 98.6
Msa0734540 AT5G55130.1 31.447 159 90 5 194 346 71 216 5.09e-12 69.3

Find 284 sgRNAs with CRISPR-Local

Find 558 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTTCATCCACTGTTTC+AGG 0.145935 5_1:-48722771 Msa0734540:intron
CAGATTCAAGAAGTGGTTTC+TGG 0.150804 5_1:+48721557 None:intergenic
TTTAAAGAATCTTGCCTTAA+TGG 0.185243 5_1:-48721881 Msa0734540:CDS
GCATCGTAACGACTATTTAT+TGG 0.188335 5_1:+48721994 None:intergenic
CTTGATTGGCTGAAGGAAAA+AGG 0.223345 5_1:-48720095 Msa0734540:CDS
CCTTCGCTAACTCTCTTTCT+TGG 0.229281 5_1:+48727287 None:intergenic
GCGAGTAGCGTTCTTGTTTC+CGG 0.235689 5_1:-48726993 Msa0734540:five_prime_UTR
CAGAAACCACTTCTTGAATC+TGG 0.245740 5_1:-48721556 Msa0734540:CDS
TGATGAGAGACTTGAGTTTC+AGG 0.248535 5_1:-48723311 Msa0734540:five_prime_UTR
TCTATCGCCAGTAATATTAA+TGG 0.258312 5_1:-48722935 Msa0734540:CDS
ACAACTTCTGCCAACTTCAT+AGG 0.264036 5_1:+48720860 None:intergenic
TTTATTAAAACTGAAGTTAG+AGG 0.276986 5_1:-48723462 Msa0734540:five_prime_UTR
GTTCAAAACCTTTGGTTGTT+TGG 0.277118 5_1:+48723132 None:intergenic
ATGTGTTTCATGATACCTTT+TGG 0.278407 5_1:-48721657 Msa0734540:CDS
GCCTTCAGCTTGTCAACTTC+AGG 0.281009 5_1:+48720377 None:intergenic
GCCTGAAGGCACTACGAATA+TGG 0.281023 5_1:+48719782 None:intergenic
GAAATTAGAAAGTTGTTCTT+TGG 0.281989 5_1:+48725478 None:intergenic
TTTGATTGCGGCGTCGAGTA+TGG 0.282748 5_1:-48727108 Msa0734540:five_prime_UTR
TGCTCAGGCACGGGATAATT+TGG 0.285244 5_1:-48721284 Msa0734540:CDS
TAAGTTCCCATTAATATTAC+TGG 0.285590 5_1:+48722928 None:intergenic
AAAGTGTTTGTTGTTGGTTC+TGG 0.291089 5_1:-48721922 Msa0734540:CDS
AACAGCTCAACGGAAATAAA+TGG 0.294987 5_1:+48719869 None:intergenic
CTCTTCCGTGATTGGAATAT+TGG 0.300320 5_1:-48721778 Msa0734540:CDS
AGAACAACTTTCTAATTTCC+AGG 0.301087 5_1:-48725474 Msa0734540:intron
AAGATTTGAGTTGGACTGTT+TGG 0.301288 5_1:-48720160 Msa0734540:CDS
TCTATTCCTTTCTTCCTTAT+CGG 0.301668 5_1:-48727506 Msa0734540:intron
AACTATGGTGCATATGAAAA+AGG 0.303743 5_1:-48723172 Msa0734540:CDS
TTAAAGAATCTTGCCTTAAT+GGG 0.306714 5_1:-48721880 Msa0734540:CDS
CGAGTAGCGTTCTTGTTTCC+GGG 0.312828 5_1:-48726992 Msa0734540:five_prime_UTR
TGATGCTTGATGACCTTTGC+CGG 0.329314 5_1:+48720182 None:intergenic
GGCCACTGGCCTTGTCTGTC+TGG 0.330511 5_1:-48720303 Msa0734540:CDS
TTTCTAACTAAGATATGTTT+AGG 0.332083 5_1:+48719827 None:intergenic
TGTTGTTGGTTCTGGTGCAC+TGG 0.338371 5_1:-48721914 Msa0734540:CDS
TCATTGAGTGCTTCCCTTAG+AGG 0.339380 5_1:+48723103 None:intergenic
TTGGTATCCCTACCCCTGAC+TGG 0.344953 5_1:-48720892 Msa0734540:CDS
CACATCGGTGCTTGTTTCTC+AGG 0.346856 5_1:+48721457 None:intergenic
TTCCATGGCTGAGCCAGTTC+CGG 0.347480 5_1:-48720201 Msa0734540:CDS
AGATTTGAGTTGGACTGTTT+GGG 0.350155 5_1:-48720159 Msa0734540:CDS
GGCTTCTGTCAGTAAGCTTC+AGG 0.352053 5_1:-48725546 Msa0734540:five_prime_UTR
GTTGTGTTCTCCGAAGTTCA+TGG 0.352599 5_1:-48723277 Msa0734540:five_prime_UTR
GGCAGTTCCTCTTCCGTGAT+TGG 0.352745 5_1:-48721786 Msa0734540:CDS
TGATGATCTAATTGTTAAGT+TGG 0.354367 5_1:-48720729 Msa0734540:CDS
AACCCTATGGCTGCCATGTT+TGG 0.355017 5_1:-48722833 Msa0734540:CDS
GCAAAGAATCTTATTCTTGC+TGG 0.359597 5_1:-48725671 Msa0734540:five_prime_UTR
CAAATCTGCAACCAGGCTTC+AGG 0.360479 5_1:-48720694 Msa0734540:CDS
CTGAAGGCCAAGTTTATTGC+TGG 0.364675 5_1:-48720362 Msa0734540:CDS
CTCTCAGGGAGCTTCTTGAT+TGG 0.364777 5_1:-48720109 Msa0734540:CDS
TCCATATTCGTAGTGCCTTC+AGG 0.366431 5_1:-48719783 Msa0734540:three_prime_UTR
TTGATGACCTTTGCCGGAAC+TGG 0.366564 5_1:+48720188 None:intergenic
GCGGCGTCGAGTATGGCTTT+TGG 0.370489 5_1:-48727101 Msa0734540:five_prime_UTR
TTCATATGCACCATAGTTTG+TGG 0.370748 5_1:+48723177 None:intergenic
CTATCGCCAGTAATATTAAT+GGG 0.371055 5_1:-48722934 Msa0734540:CDS
CTTCTACAGCAATTTGCCTT+TGG 0.378864 5_1:-48722872 Msa0734540:CDS
TCCTTCTTTGGCTGAAAGTC+AGG 0.379261 5_1:+48720821 None:intergenic
TCTACTGCATCTAGCATTCC+AGG 0.380310 5_1:-48723032 Msa0734540:CDS
CTTCTTGAATCTGGAACTCT+TGG 0.385963 5_1:-48721547 Msa0734540:CDS
TTGTGTAAAGAGTGAGGGTT+TGG 0.388446 5_1:+48727583 None:intergenic
GTTTCCGGGATGCGAGGACT+TGG 0.393100 5_1:-48726978 Msa0734540:five_prime_UTR
CGGCAATGAGAGAGAACGTT+TGG 0.395530 5_1:+48727536 None:intergenic
TCCACAAGAAACTCCCATTA+AGG 0.397211 5_1:+48721867 None:intergenic
AGCAGGCAGCTTGCTGTGTA+TGG 0.400305 5_1:-48727041 Msa0734540:five_prime_UTR
CGTTTCGGTGCAGACCAAAA+TGG 0.402314 5_1:+48721001 None:intergenic
GAAGAAGACACCACAAACTA+TGG 0.406363 5_1:-48723187 Msa0734540:CDS
TAGAGGCTGCCATCAGAAAC+TGG 0.408365 5_1:+48720933 None:intergenic
GATAAGTTCATTTCTGAGAT+AGG 0.408784 5_1:-48723004 Msa0734540:CDS
TACCATATGGACGTGATAGC+TGG 0.413160 5_1:-48720434 Msa0734540:CDS
AAGTATGCATTTACTTCAGC+TGG 0.413743 5_1:+48721352 None:intergenic
CTAAGTTGGCAAAGGTGTTT+CGG 0.417033 5_1:+48720237 None:intergenic
GGCAAATTGCTGTAGAAGCT+TGG 0.417666 5_1:+48722877 None:intergenic
TTGGGCTCGATCTGAGTTTG+AGG 0.418168 5_1:-48721392 Msa0734540:CDS
AGTGAGGGTTTGGTTTGATT+CGG 0.418978 5_1:+48727593 None:intergenic
TCTGGAGTTGTACAAAGCTT+TGG 0.419529 5_1:-48720285 Msa0734540:CDS
GGTTTGAAGTTCAAAACCTT+TGG 0.419591 5_1:+48723124 None:intergenic
ACATTGACCACTGCTTGACT+TGG 0.423197 5_1:-48721411 Msa0734540:CDS
GCAGTTGAGGTTGCAATCGC+TGG 0.425831 5_1:+48720329 None:intergenic
ATGAAGGGACTGTAGAGTTA+TGG 0.426761 5_1:-48725625 Msa0734540:five_prime_UTR
TGAAGGGACTGTAGAGTTAT+GGG 0.430566 5_1:-48725624 Msa0734540:five_prime_UTR
GTTGTTGGTTCTGGTGCACT+GGG 0.430831 5_1:-48721913 Msa0734540:CDS
CTAGTACTGGAGCTCCATTT+TGG 0.431384 5_1:-48721015 Msa0734540:CDS
ATACTACGCGCAGAAACATT+TGG 0.432473 5_1:-48720911 Msa0734540:CDS
TTAGGTGGGGAATGACCATC+TGG 0.432952 5_1:+48721509 None:intergenic
GAGGTTGTCAAAGCATGCTC+TGG 0.433486 5_1:-48722794 Msa0734540:CDS
GTATGAAGGGATTTCCATCT+TGG 0.433617 5_1:+48719962 None:intergenic
GCAAATTGCTGTAGAAGCTT+GGG 0.434219 5_1:+48722878 None:intergenic
TCTCAGAAATGAACTTATCC+AGG 0.437517 5_1:+48723008 None:intergenic
AGCAATTTGCCTTTGGTGCT+AGG 0.439721 5_1:-48722865 Msa0734540:CDS
CAGCAACTGTGGACTTCGCC+TGG 0.443178 5_1:+48721755 None:intergenic
AGTGGACGAGGGAACCGTTT+CGG 0.444508 5_1:+48720986 None:intergenic
GCCTTAATGGGAGTTTCTTG+TGG 0.450723 5_1:-48721868 Msa0734540:CDS
ATAGGCCGCTTCCCCGTCGC+TGG 0.451628 5_1:-48722986 Msa0734540:CDS
TAAAAGACAATCCTACTCTC+AGG 0.451668 5_1:-48720124 Msa0734540:CDS
GGAGCGCGTTCTTGAATGCT+TGG 0.453147 5_1:-48721263 Msa0734540:CDS
TGGGCTCGATCTGAGTTTGA+GGG 0.454796 5_1:-48721391 Msa0734540:CDS
TTAACCAATGTTTCTTGAGA+TGG 0.458620 5_1:-48719660 Msa0734540:three_prime_UTR
TCTGTAACCTTGCACGATGA+AGG 0.460758 5_1:-48725641 Msa0734540:five_prime_UTR
CCGTGATTGGAATATTGGCC+AGG 0.460888 5_1:-48721773 Msa0734540:CDS
CAACTTCTGCCAACTTCATA+GGG 0.461246 5_1:+48720861 None:intergenic
GATGCTAAAGTGTTTGTTGT+TGG 0.462634 5_1:-48721928 Msa0734540:CDS
CGAGGACTTGGTGCTGAGAT+TGG 0.465948 5_1:-48726966 Msa0734540:intron
GCCATGTTTGGTGGAATTGT+AGG 0.467732 5_1:-48722821 Msa0734540:CDS
GAGCTTCAATATTCAGTTGA+GGG 0.468390 5_1:+48721710 None:intergenic
TCCATCCGCTCTTTGTGCCT+AGG 0.470744 5_1:+48720017 None:intergenic
CGACGCCGCAATCAAATTCC+CGG 0.471003 5_1:+48727115 None:intergenic
GCAATTTGCCTTTGGTGCTA+GGG 0.471795 5_1:-48722864 Msa0734540:CDS
AAAGAGAGGCAGTGCTAAGT+TGG 0.472731 5_1:+48720223 None:intergenic
TCTTCCTCTGAACCAGCGAC+GGG 0.473013 5_1:+48722974 None:intergenic
AGTAATATTAATGGGAACTT+AGG 0.473212 5_1:-48722926 Msa0734540:CDS
GACGGAGAGGAACCACATAC+TGG 0.474327 5_1:-48723385 Msa0734540:five_prime_UTR
GAAACATGCTATTGAAAAGC+AGG 0.474711 5_1:+48720039 None:intergenic
GGAAATAAATGGATACTTGA+GGG 0.475547 5_1:+48719880 None:intergenic
GAGGAGAACTGCAGTGGACG+AGG 0.475825 5_1:+48720974 None:intergenic
TATACCTTCTCAAACTGGAT+TGG 0.476277 5_1:+48720665 None:intergenic
ATTGGCTTCATCCTGAAGCC+TGG 0.476395 5_1:+48720683 None:intergenic
AAATGAACTTATCCAGGGCC+TGG 0.478545 5_1:+48723014 None:intergenic
GAGGATGCTGCAACTAGTAC+TGG 0.479266 5_1:-48721028 Msa0734540:CDS
GAAGTGGTTTCTGGAAATAC+AGG 0.480601 5_1:+48721566 None:intergenic
CGCTGGTGATGCTCAGGCAC+GGG 0.482562 5_1:-48721293 Msa0734540:CDS
TTGATGAGGATCTGCATAGC+AGG 0.483115 5_1:-48727058 Msa0734540:five_prime_UTR
TTTGAACTTCAAACCTCTAA+GGG 0.484104 5_1:-48723116 Msa0734540:CDS
GCCCAGCTATCACGTCCATA+TGG 0.486722 5_1:+48720432 None:intergenic
TGATGATACAAACTACCATA+TGG 0.487832 5_1:-48720447 Msa0734540:CDS
ATCAGAAACTGGAGATGACT+TGG 0.488848 5_1:+48720944 None:intergenic
CACAGAAGCAGTAGAGAGAC+TGG 0.489594 5_1:+48720769 None:intergenic
TCAAGCATCAAGATTTGAGT+TGG 0.490518 5_1:-48720169 Msa0734540:CDS
CAGTCTCTCTACTGCTTCTG+TGG 0.491243 5_1:-48720768 Msa0734540:CDS
GGAGTTTCTTGTGGAGGTCA+AGG 0.491274 5_1:-48721859 Msa0734540:CDS
GCATCTAGCATTCCAGGCCC+TGG 0.491544 5_1:-48723026 Msa0734540:CDS
CAAGCAAACATACTTAAGTC+TGG 0.492461 5_1:+48721198 None:intergenic
CCCCACCTAACAGAAAACTA+TGG 0.494247 5_1:-48721496 Msa0734540:CDS
AGCAAGGGATATTGCCAAGA+TGG 0.494470 5_1:-48719976 Msa0734540:CDS
GAAGAACGCTGGTGATGCTC+AGG 0.496933 5_1:-48721299 Msa0734540:CDS
TAGAGAAGAGTAACTTAAGC+AGG 0.497531 5_1:-48721807 Msa0734540:CDS
CAACTCAGGTTCGGTTAAGA+AGG 0.499392 5_1:-48727210 Msa0734540:five_prime_UTR
ATTAGTATATTCACTTGGGT+TGG 0.501780 5_1:+48721327 None:intergenic
TTTACTGTTGTTGATGTTGA+CGG 0.502308 5_1:-48723403 Msa0734540:five_prime_UTR
CCACCAAACATGGCAGCCAT+AGG 0.502484 5_1:+48722830 None:intergenic
TGTTTCTGCGCGTAGTATAG+AGG 0.504143 5_1:+48720916 None:intergenic
ATGTTTAGGACACAACTGAT+TGG 0.505795 5_1:+48719841 None:intergenic
GTACTAGTTGCAGCATCCTC+AGG 0.507340 5_1:+48721031 None:intergenic
TTACTGTTGCTGTTGTTGAT+CGG 0.509874 5_1:+48727245 None:intergenic
AGAGTTCCAGATTCAAGAAG+TGG 0.510671 5_1:+48721550 None:intergenic
TTCGGTTAAGAAGGCGCGGA+TGG 0.513188 5_1:-48727201 Msa0734540:five_prime_UTR
ACCTCAACTGCTATGGCCAC+TGG 0.513534 5_1:-48720317 Msa0734540:CDS
AATCTGGAAACGTACCGATA+AGG 0.515168 5_1:+48727492 None:intergenic
TCGGTAATAAAGCGATAAAG+AGG 0.515568 5_1:+48727612 None:intergenic
TTTCTCAGGTGGATCTCTTG+AGG 0.516110 5_1:+48721471 None:intergenic
GGCTGAGCCAGTTCCGGCAA+AGG 0.516192 5_1:-48720195 Msa0734540:CDS
CCTATGGCTGCCATGTTTGG+TGG 0.517240 5_1:-48722830 Msa0734540:CDS
TTTAAATCATTAGGATGCAA+TGG 0.518509 5_1:+48722018 None:intergenic
CTGAACCAGCGACGGGGAAG+CGG 0.519190 5_1:+48722981 None:intergenic
GAACTTAGGTGATGGAAGGT+TGG 0.522752 5_1:-48722912 Msa0734540:CDS
TCGCTAAGAAGAAATTCGCC+TGG 0.524799 5_1:+48723079 None:intergenic
CATTGACCACTGCTTGACTT+GGG 0.525222 5_1:-48721410 Msa0734540:CDS
GTTGGACTGTTTGGGACAGA+TGG 0.525287 5_1:-48720151 Msa0734540:CDS
AGCAGGGTTGTCATTGCTGA+TGG 0.525509 5_1:+48723351 None:intergenic
TCTATGTGACGACGGTATGA+AGG 0.525866 5_1:+48719948 None:intergenic
AGGGAAGCACTCAATGATCC+AGG 0.528850 5_1:-48723097 Msa0734540:CDS
TGGTATCCCTACCCCTGACT+GGG 0.529089 5_1:-48720891 Msa0734540:CDS
CTTCCCCGTCGCTGGTTCAG+AGG 0.532088 5_1:-48722978 Msa0734540:CDS
GACGCAATTATTCCAGTATG+TGG 0.534184 5_1:+48723373 None:intergenic
TTGCATTAGTATATTCACTT+GGG 0.538332 5_1:+48721323 None:intergenic
TTGGAATTGTGTAAAGAGTG+AGG 0.538490 5_1:+48727577 None:intergenic
TGTACAAAGCTTTGGATGGA+GGG 0.538756 5_1:-48720277 Msa0734540:CDS
CGGAAATAAATGGATACTTG+AGG 0.538825 5_1:+48719879 None:intergenic
GGCAGCTTGCTGTGTATGGT+AGG 0.539353 5_1:-48727037 Msa0734540:five_prime_UTR
ATTGCATTAGTATATTCACT+TGG 0.541152 5_1:+48721322 None:intergenic
GCCAGTGGCCATAGCAGTTG+AGG 0.541357 5_1:+48720316 None:intergenic
ACCTGACTTTCAGCCAAAGA+AGG 0.541490 5_1:-48720822 Msa0734540:CDS
ATGGGAACTTAGGTGATGGA+AGG 0.543924 5_1:-48722916 Msa0734540:CDS
TGAAGGCCAAGTTTATTGCT+GGG 0.544977 5_1:-48720361 Msa0734540:CDS
AGCACCAAGTCCTCGCATCC+CGG 0.545712 5_1:+48726974 None:intergenic
ACCATATGGACGTGATAGCT+GGG 0.545943 5_1:-48720433 Msa0734540:CDS
TTCACCATCTCAAGAAACAT+TGG 0.546066 5_1:+48719656 None:intergenic
CGTTCTTGAATGCTTGGACA+AGG 0.549794 5_1:-48721257 Msa0734540:CDS
CAATATTCCAATCACGGAAG+AGG 0.549876 5_1:+48721779 None:intergenic
AACATACTTAAGTCTGGCCC+AGG 0.550964 5_1:+48721204 None:intergenic
TTAATGGGAGTTTCTTGTGG+AGG 0.551450 5_1:-48721865 Msa0734540:CDS
TGGAATTGTGTAAAGAGTGA+GGG 0.551716 5_1:+48727578 None:intergenic
AACGTACCGATAAGGAAGAA+AGG 0.551846 5_1:+48727500 None:intergenic
TGCCGGAACTGGCTCAGCCA+TGG 0.552669 5_1:+48720199 None:intergenic
AGCTTTCTCAAGACTGACTT+CGG 0.552709 5_1:+48723530 None:intergenic
CTCTTTCATACCATGAACTT+CGG 0.552721 5_1:+48723267 None:intergenic
GATCCGCCCAGCAATAAACT+TGG 0.553499 5_1:+48720355 None:intergenic
ATCTTCCTCTGAACCAGCGA+CGG 0.553654 5_1:+48722973 None:intergenic
AATGCTTATAGTATTTCTTG+TGG 0.555880 5_1:-48720068 Msa0734540:CDS
CTGTAACCTTGCACGATGAA+GGG 0.556726 5_1:-48725640 Msa0734540:five_prime_UTR
ATTAATGGGAACTTAGGTGA+TGG 0.556937 5_1:-48722920 Msa0734540:CDS
TCCTACAATTCCACCAAACA+TGG 0.558580 5_1:+48722820 None:intergenic
CACCAAACATGGCAGCCATA+GGG 0.558852 5_1:+48722831 None:intergenic
TACAGTCCCTTCATCGTGCA+AGG 0.559502 5_1:+48725634 None:intergenic
GGATGGAGGGCACAAACTTG+AGG 0.559895 5_1:-48720264 Msa0734540:CDS
GATTGCAACCTCAACTGCTA+TGG 0.560816 5_1:-48720324 Msa0734540:CDS
ATCGGTGCTTGTTTCTCAGG+TGG 0.560877 5_1:+48721460 None:intergenic
TAACAGTAACAACTCAGGTT+CGG 0.560943 5_1:-48727219 Msa0734540:five_prime_UTR
TTGTACAAAGCTTTGGATGG+AGG 0.561407 5_1:-48720278 Msa0734540:CDS
GAGTTGTACAAAGCTTTGGA+TGG 0.564658 5_1:-48720281 Msa0734540:CDS
GGAGCTTCTTGATTGGCTGA+AGG 0.564907 5_1:-48720102 Msa0734540:CDS
GATCCTCATCAATCTCCTGC+GGG 0.565030 5_1:+48727069 None:intergenic
ATGTTTGTCGCCTTGCCTGA+AGG 0.567163 5_1:+48719768 None:intergenic
CAATACTGCCCTAGCACCAA+AGG 0.568311 5_1:+48722856 None:intergenic
TTGTTAAGTTGGAGAGATTG+CGG 0.569445 5_1:-48720718 Msa0734540:CDS
ATATCAAATACCTGAAACAG+TGG 0.571836 5_1:+48722761 None:intergenic
ACGCTGGTGATGCTCAGGCA+CGG 0.571857 5_1:-48721294 Msa0734540:CDS
TCAACGCAAGATACTACAGC+AGG 0.572004 5_1:+48723334 None:intergenic
ATTCGTAGTGCCTTCAGGCA+AGG 0.577745 5_1:-48719778 Msa0734540:three_prime_UTR
CTGGAGATGACTTGGATCAG+AGG 0.578510 5_1:+48720952 None:intergenic
GAGTTTCTTGTGGAGGTCAA+GGG 0.579278 5_1:-48721858 Msa0734540:CDS
CTATGTGACGACGGTATGAA+GGG 0.583308 5_1:+48719949 None:intergenic
GGCGATAACAGTAACAGTAC+CGG 0.583723 5_1:-48727134 Msa0734540:five_prime_UTR
AGGTTGTCAAAGCATGCTCT+GGG 0.583903 5_1:-48722793 Msa0734540:CDS
AAAAGACAATCCTACTCTCA+GGG 0.588461 5_1:-48720123 Msa0734540:CDS
AGGCAGTGCTAAGTTGGCAA+AGG 0.588629 5_1:+48720229 None:intergenic
AAGTCATCTCCAGTTTCTGA+TGG 0.589571 5_1:-48720942 Msa0734540:CDS
TTTGAGTTGAAACGCAACTT+CGG 0.589995 5_1:-48719722 Msa0734540:three_prime_UTR
TCCTAGGCACAAAGAGCGGA+TGG 0.590716 5_1:-48720018 Msa0734540:CDS
AAAAGTTGTAGATTTAGCAA+GGG 0.591947 5_1:-48719991 Msa0734540:CDS
GAGAGACTTGAGTTTCAGGA+TGG 0.593512 5_1:-48723307 Msa0734540:five_prime_UTR
AGAAAGGAATAGAATCTGAT+CGG 0.594954 5_1:+48727516 None:intergenic
TCGGTTAAGAAGGCGCGGAT+GGG 0.595970 5_1:-48727200 Msa0734540:five_prime_UTR
CCTGGCCAATATTCCAATCA+CGG 0.596475 5_1:+48721773 None:intergenic
TGGTGGAATTGTAGGACAAG+AGG 0.596531 5_1:-48722813 Msa0734540:CDS
CGGTAATAAAGCGATAAAGA+GGG 0.598263 5_1:+48727613 None:intergenic
GCAGCTTGCTGTGTATGGTA+GGG 0.598555 5_1:-48727036 Msa0734540:five_prime_UTR
CACACAGGCCAAACAACCAA+AGG 0.598610 5_1:-48723140 Msa0734540:CDS
TCGTCACATAGATGTTGTTG+TGG 0.599771 5_1:-48719937 Msa0734540:CDS
TTAGGATGCAATGGTTCTGT+CGG 0.600075 5_1:+48722027 None:intergenic
AACAGTAACAGTAACAACTC+AGG 0.601183 5_1:-48727224 Msa0734540:five_prime_UTR
AGCTAAATGCAATACCCAGA+TGG 0.602057 5_1:-48721524 Msa0734540:CDS
AGAGCTTCAATATTCAGTTG+AGG 0.602807 5_1:+48721709 None:intergenic
ATGCTAGATGCAGTAGAGGT+GGG 0.606083 5_1:+48723038 None:intergenic
TCAAGAAGCTCCCTGAGAGT+AGG 0.607687 5_1:+48720113 None:intergenic
AATGCTAGATGCAGTAGAGG+TGG 0.608189 5_1:+48723037 None:intergenic
TAGGGCAGTATTGAACCCTA+TGG 0.608225 5_1:-48722846 Msa0734540:CDS
TGTATGGTAGGGAGACTATG+AGG 0.608486 5_1:-48727025 Msa0734540:five_prime_UTR
AGATGTTGTTGTGGCTTGTG+AGG 0.611793 5_1:-48719928 Msa0734540:CDS
GTTCTTGTTTCCGGGATGCG+AGG 0.612931 5_1:-48726984 Msa0734540:five_prime_UTR
TCCTGAAGTTGACAAGCTGA+AGG 0.613866 5_1:-48720378 Msa0734540:CDS
CTCAGAAATGAACTTATCCA+GGG 0.613872 5_1:+48723009 None:intergenic
GGTATGAAAGAGTTGAATGA+CGG 0.614542 5_1:-48723256 Msa0734540:CDS
CCAAGAAAGAGAGTTAGCGA+AGG 0.614686 5_1:-48727287 Msa0734540:five_prime_UTR
TGGAATGCTAGATGCAGTAG+AGG 0.618576 5_1:+48723034 None:intergenic
AGCAGCTGTTGCAGCAACTG+TGG 0.622684 5_1:+48721744 None:intergenic
AGATCCTCATCAATCTCCTG+CGG 0.623454 5_1:+48727068 None:intergenic
GTAATTGCGTGCTCTCATGT+TGG 0.625010 5_1:+48720406 None:intergenic
GACAAGAGTTTCAGTAGCGG+CGG 0.626725 5_1:-48727155 Msa0734540:five_prime_UTR
TCAGAGGAGGAGAACTGCAG+TGG 0.627364 5_1:+48720968 None:intergenic
ACTAATGCAATGAAGAACGC+TGG 0.628383 5_1:-48721310 Msa0734540:CDS
TTGCGGTCAAATCTGCAACC+AGG 0.628501 5_1:-48720701 Msa0734540:CDS
CTCAAATATGAACTGTGAGA+CGG 0.633623 5_1:+48719739 None:intergenic
ATCGAGCCCAAGTCAAGCAG+TGG 0.639227 5_1:+48721404 None:intergenic
GAAGCCAATCCAGTTTGAGA+AGG 0.640400 5_1:-48720669 Msa0734540:intron
AAAAGGTGGTATTGTCACAC+AGG 0.640867 5_1:-48723155 Msa0734540:CDS
TATAAGCTAACTGCTTCACT+CGG 0.644091 5_1:+48721059 None:intergenic
AGGAGAACTGCAGTGGACGA+GGG 0.645043 5_1:+48720975 None:intergenic
CAGTACCGGGAATTTGATTG+CGG 0.646358 5_1:-48727120 Msa0734540:five_prime_UTR
GCGATAACAGTAACAGTACC+GGG 0.648141 5_1:-48727133 Msa0734540:five_prime_UTR
TTTCAGTTTCAGAGCTAACA+CGG 0.652120 5_1:+48721680 None:intergenic
TGTCAAGCTTAGTACAAGCA+CGG 0.654017 5_1:+48725511 None:intergenic
GGTAATAAAGCGATAAAGAG+GGG 0.654602 5_1:+48727614 None:intergenic
GAGATGACTTGGATCAGAGG+AGG 0.659455 5_1:+48720955 None:intergenic
GGCTCAGCCATGGAAAAGAG+AGG 0.660682 5_1:+48720209 None:intergenic
CAACAACATCTATGTGACGA+CGG 0.662935 5_1:+48719940 None:intergenic
TGTGAATGCAAGACTATACG+TGG 0.663201 5_1:-48721599 Msa0734540:CDS
AATGAATGCACGGTACACAT+CGG 0.665103 5_1:+48721442 None:intergenic
CAGGTTCGGTTAAGAAGGCG+CGG 0.667374 5_1:-48727205 Msa0734540:five_prime_UTR
CAATAGGAGGCTGATGACTG+TGG 0.671941 5_1:+48723487 None:intergenic
ACATCAACAACAGTAAACTC+AGG 0.672812 5_1:+48723409 None:intergenic
ATTGGATGAAAACAGCTCAA+CGG 0.674569 5_1:+48719859 None:intergenic
AAGCAGTGGTCAATGTTGTG+TGG 0.675358 5_1:+48721418 None:intergenic
TGTACAACTCCAGACAGACA+AGG 0.675587 5_1:+48720294 None:intergenic
TGTTTCCTAGGCACAAAGAG+CGG 0.681256 5_1:-48720022 Msa0734540:CDS
CTTCCTCTGAACCAGCGACG+GGG 0.682309 5_1:+48722975 None:intergenic
TAGGTGGGGAATGACCATCT+GGG 0.685278 5_1:+48721510 None:intergenic
CTCCAGACAGACAAGGCCAG+TGG 0.687437 5_1:+48720301 None:intergenic
CTTGGACAAGGAGAAGTGTG+AGG 0.693103 5_1:-48721245 Msa0734540:CDS
TAACCCGCAGGAGATTGATG+AGG 0.693992 5_1:-48727072 Msa0734540:five_prime_UTR
GAACTTCGGAGAACACAACA+AGG 0.697668 5_1:+48723281 None:intergenic
AGGCCAAGTTTATTGCTGGG+CGG 0.703125 5_1:-48720358 Msa0734540:CDS
TGTTGTTGATGTTGACGGAG+AGG 0.708009 5_1:-48723398 Msa0734540:five_prime_UTR
CAACGCAAGATACTACAGCA+GGG 0.714305 5_1:+48723335 None:intergenic
AGTGACAAGAGTTTCAGTAG+CGG 0.717098 5_1:-48727158 Msa0734540:five_prime_UTR
GTTGTGTGGAAATGAATGCA+CGG 0.719285 5_1:+48721432 None:intergenic
TTGTTGGTTCTGGTGCACTG+GGG 0.742108 5_1:-48721912 Msa0734540:CDS
ATGGTAGGGAGACTATGAGG+AGG 0.751101 5_1:-48727022 Msa0734540:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTTAACTTTTTTTTTT+AGG - chr5_1:48722861-48722880 Msa0734540:CDS 10.0%
!!! AAAACTTTTTTTTTTTTTGA+AGG + chr5_1:48723243-48723262 None:intergenic 10.0%
!!! TCACTTTATTTTTATATAAT+TGG - chr5_1:48723469-48723488 Msa0734540:five_prime_UTR 10.0%
!! AAAACAAAACAAAATTAAGA+AGG + chr5_1:48719850-48719869 None:intergenic 15.0%
!!! TTTTCCTAATTAAAATAACA+AGG - chr5_1:48720655-48720674 Msa0734540:intron 15.0%
!! TTTCCTAATTAAAATAACAA+GGG - chr5_1:48720656-48720675 Msa0734540:intron 15.0%
!!! TAAGTATTTATATTAGTCTT+TGG - chr5_1:48721099-48721118 Msa0734540:intron 15.0%
!! AAAAGTAATAAGATATTCTA+AGG + chr5_1:48721218-48721237 None:intergenic 15.0%
!!! TTAGAATATCTTATTACTTT+TGG - chr5_1:48721217-48721236 Msa0734540:CDS 15.0%
!! AAAATGAAATAAGATTATTG+AGG - chr5_1:48722056-48722075 Msa0734540:CDS 15.0%
!!! TATTTGAAATTATTGAATGA+AGG - chr5_1:48722622-48722641 Msa0734540:intron 15.0%
!! ATGTTTACATTATAAAATCA+TGG - chr5_1:48722727-48722746 Msa0734540:intron 15.0%
!! ATATAACTAATCATAATAAG+AGG - chr5_1:48722753-48722772 Msa0734540:intron 15.0%
!! TATAACTAATCATAATAAGA+GGG - chr5_1:48722754-48722773 Msa0734540:intron 15.0%
!!! TCTTTTGTATAAATAATTCT+TGG - chr5_1:48724650-48724669 Msa0734540:intron 15.0%
!!! CTTTTGTATAAATAATTCTT+GGG - chr5_1:48724651-48724670 Msa0734540:intron 15.0%
!! AGAAAACTTATATCTTATAT+TGG - chr5_1:48724694-48724713 Msa0734540:intron 15.0%
!!! TTTATTGGTTTTAAATCATT+AGG + chr5_1:48725216-48725235 None:intergenic 15.0%
!! AATACAATTACAAAAAAGAA+AGG + chr5_1:48726632-48726651 None:intergenic 15.0%
!!! TTCTTTTTTGTAATTGTATT+TGG - chr5_1:48726632-48726651 Msa0734540:intron 15.0%
!!! TTTTTTTAAATGTGAAGAAG+TGG - chr5_1:48720487-48720506 Msa0734540:intron 20.0%
!!! TTACCCTTGTTATTTTAATT+AGG + chr5_1:48720662-48720681 None:intergenic 20.0%
!! ACACATTTATTAGTTGAAAA+GGG + chr5_1:48720820-48720839 None:intergenic 20.0%
!! AACACATTTATTAGTTGAAA+AGG + chr5_1:48720821-48720840 None:intergenic 20.0%
!!! GAAGTGTTTGATAAAATTAA+CGG - chr5_1:48720904-48720923 Msa0734540:CDS 20.0%
!!! TAGTGTTTTGTTTTAATAAC+CGG - chr5_1:48721012-48721031 Msa0734540:CDS 20.0%
!!! ATTTATATTAGTCTTTGGTT+TGG - chr5_1:48721104-48721123 Msa0734540:intron 20.0%
!!! AGTTTGTCATTTCAAAATTA+AGG + chr5_1:48721901-48721920 None:intergenic 20.0%
!!! ACATATGCTACATTATTTTA+TGG - chr5_1:48721971-48721990 Msa0734540:CDS 20.0%
!!! TTTTAATCATTATAATAGCC+AGG + chr5_1:48722019-48722038 None:intergenic 20.0%
!! AAGTATGTTAGCAATATAAT+AGG + chr5_1:48722116-48722135 None:intergenic 20.0%
!! ATACTATTATCTGTAAAGAT+GGG - chr5_1:48722394-48722413 Msa0734540:intron 20.0%
!! TAATAGGTGATTAATGTTTA+TGG - chr5_1:48722658-48722677 Msa0734540:intron 20.0%
!! ATAACTAATCATAATAAGAG+GGG - chr5_1:48722755-48722774 Msa0734540:intron 20.0%
!!! TTTTTTTTAGGAATATAGTG+AGG - chr5_1:48722873-48722892 Msa0734540:CDS 20.0%
!!! TAGAGTAATATTTTAGTTCT+TGG - chr5_1:48723065-48723084 Msa0734540:CDS 20.0%
!! TATGTCACAAACATATTTAA+AGG - chr5_1:48723133-48723152 Msa0734540:CDS 20.0%
!! AAACATATTTAAAGGAAGAA+TGG - chr5_1:48723141-48723160 Msa0734540:CDS 20.0%
!! ACATGTTATCTACATTATAT+TGG + chr5_1:48723206-48723225 None:intergenic 20.0%
!! AGTATATGTATGTAATGTTA+AGG - chr5_1:48723317-48723336 Msa0734540:five_prime_UTR 20.0%
!! TTGATATGATATTAGATGTT+AGG - chr5_1:48723352-48723371 Msa0734540:five_prime_UTR 20.0%
!!! TCAGTTTTAATAAAAGCAAT+AGG + chr5_1:48723754-48723773 None:intergenic 20.0%
!! TTTATTAAAACTGAAGTTAG+AGG - chr5_1:48723760-48723779 Msa0734540:intron 20.0%
!!! CTCTTGTATTTTGAAATATT+GGG - chr5_1:48724504-48724523 Msa0734540:intron 20.0%
!! ATGATATACTTGGATTAATA+TGG - chr5_1:48724959-48724978 Msa0734540:intron 20.0%
!! TATTATAATTATAATCTCCG+GGG + chr5_1:48725075-48725094 None:intergenic 20.0%
!! GTATTATAATTATAATCTCC+GGG + chr5_1:48725076-48725095 None:intergenic 20.0%
!! GGTATTATAATTATAATCTC+CGG + chr5_1:48725077-48725096 None:intergenic 20.0%
!! TTATTTATGTTAATTCATGC+CGG - chr5_1:48726059-48726078 Msa0734540:intron 20.0%
!!! TTTTTTGTAATTGTATTTGG+TGG - chr5_1:48726635-48726654 Msa0734540:intron 20.0%
!! TTTCTAACTAAGATATGTTT+AGG + chr5_1:48727398-48727417 None:intergenic 20.0%
! TGAAAAACCTTAAGAAACAT+AGG + chr5_1:48719768-48719787 None:intergenic 25.0%
!!! TTTCATCGATTCGATTTTAT+AGG - chr5_1:48719789-48719808 Msa0734540:three_prime_UTR 25.0%
!!! TTCATCGATTCGATTTTATA+GGG - chr5_1:48719790-48719809 Msa0734540:three_prime_UTR 25.0%
!!! GTTTTTTTTGATAATCTCGA+TGG - chr5_1:48719865-48719884 Msa0734540:exon 25.0%
!!! TTTGTTGATTTGATAGATCT+AGG - chr5_1:48720324-48720343 Msa0734540:CDS 25.0%
! CACATTTATTAGTTGAAAAG+GGG + chr5_1:48720819-48720838 None:intergenic 25.0%
!!! TTGATTGATTTGATAGATCT+AGG - chr5_1:48720840-48720859 Msa0734540:CDS 25.0%
! CTAAAGTAAATACTTGTATC+AGG + chr5_1:48720995-48721014 None:intergenic 25.0%
!! AAGTTTATAAATGAGAGCAT+GGG + chr5_1:48721159-48721178 None:intergenic 25.0%
! ACATTTACTTATAAGCTATC+CGG + chr5_1:48721184-48721203 None:intergenic 25.0%
!!! AGTTTTTTCAACATATGAAG+AGG - chr5_1:48721299-48721318 Msa0734540:CDS 25.0%
! AAAAAGCTAAAAGCAATACA+AGG + chr5_1:48721375-48721394 None:intergenic 25.0%
! GAAATTAGAAAGTTGTTCTT+TGG + chr5_1:48721747-48721766 None:intergenic 25.0%
!!! TTTTGCTCTCTACTTATTTT+TGG - chr5_1:48721780-48721799 Msa0734540:CDS 25.0%
! ATATGTAAACTATGTATCAG+AGG + chr5_1:48721957-48721976 None:intergenic 25.0%
!! TCTATTTGGTTTACATTTCT+TGG - chr5_1:48722139-48722158 Msa0734540:intron 25.0%
! CATACTATTATCTGTAAAGA+TGG - chr5_1:48722393-48722412 Msa0734540:intron 25.0%
! TGTGAAGTAATTATGTAGAA+TGG - chr5_1:48722577-48722596 Msa0734540:intron 25.0%
! GTGAAGTAATTATGTAGAAT+GGG - chr5_1:48722578-48722597 Msa0734540:intron 25.0%
! TAATTATGTAGAATGGGAAT+GGG - chr5_1:48722584-48722603 Msa0734540:intron 25.0%
! CTCAAGTAGTAGATTAATAA+GGG + chr5_1:48722954-48722973 None:intergenic 25.0%
! TTCAACTTTATGTCATACTT+CGG - chr5_1:48722980-48722999 Msa0734540:CDS 25.0%
!!! AATATTTTAGTTCTTGGTCT+TGG - chr5_1:48723071-48723090 Msa0734540:CDS 25.0%
!!! ATATTTTAGTTCTTGGTCTT+GGG - chr5_1:48723072-48723091 Msa0734540:CDS 25.0%
!! GTATGTAATGTTAAGGTTTT+TGG - chr5_1:48723324-48723343 Msa0734540:five_prime_UTR 25.0%
! ATATGATATTAGATGTTAGG+TGG - chr5_1:48723355-48723374 Msa0734540:five_prime_UTR 25.0%
! TATAATTGGTAGAAATGTGA+AGG - chr5_1:48723483-48723502 Msa0734540:five_prime_UTR 25.0%
! ATAATTGGTAGAAATGTGAA+GGG - chr5_1:48723484-48723503 Msa0734540:five_prime_UTR 25.0%
! AATTAATGAAATCATGTGAG+CGG - chr5_1:48723532-48723551 Msa0734540:five_prime_UTR 25.0%
! TCAAATAAGTCAGAAACAAA+TGG + chr5_1:48723623-48723642 None:intergenic 25.0%
! GTTTATTATAACTGTCTTGT+AGG - chr5_1:48723657-48723676 Msa0734540:intron 25.0%
!!! GTTTTAATAAAAGCAATAGG+AGG + chr5_1:48723751-48723770 None:intergenic 25.0%
!! CTAGCATTTTTAATCTTTCT+TGG + chr5_1:48723996-48724015 None:intergenic 25.0%
! TAAGTTCCCATTAATATTAC+TGG + chr5_1:48724297-48724316 None:intergenic 25.0%
! AGTAATATTAATGGGAACTT+AGG - chr5_1:48724296-48724315 Msa0734540:intron 25.0%
! CCAATATTTCAAAATACAAG+AGG + chr5_1:48724506-48724525 None:intergenic 25.0%
!!! CCTCTTGTATTTTGAAATAT+TGG - chr5_1:48724503-48724522 Msa0734540:intron 25.0%
! ACCAAATTTCACTTATTATG+AGG + chr5_1:48724776-48724795 None:intergenic 25.0%
! TTGACTATCATTTGATTGTT+TGG - chr5_1:48724797-48724816 Msa0734540:intron 25.0%
! AACCATGGATATTATAAAAG+AGG + chr5_1:48724831-48724850 None:intergenic 25.0%
! AAACAGTTCAATGATATACT+TGG - chr5_1:48724949-48724968 Msa0734540:intron 25.0%
!! TGGATTAATATGGTTTTTAC+TGG - chr5_1:48724969-48724988 Msa0734540:intron 25.0%
! TATAAAAATACCTAGTCTGT+TGG - chr5_1:48724994-48725013 Msa0734540:intron 25.0%
! ATAATACCTTACATTTCTTC+TGG - chr5_1:48725089-48725108 Msa0734540:intron 25.0%
! TTTAAATCATTAGGATGCAA+TGG + chr5_1:48725207-48725226 None:intergenic 25.0%
! TTTAAAGAATCTTGCCTTAA+TGG - chr5_1:48725341-48725360 Msa0734540:intron 25.0%
! TTAAAGAATCTTGCCTTAAT+GGG - chr5_1:48725342-48725361 Msa0734540:intron 25.0%
! TTGCATTAGTATATTCACTT+GGG + chr5_1:48725902-48725921 None:intergenic 25.0%
! ATTGCATTAGTATATTCACT+TGG + chr5_1:48725903-48725922 None:intergenic 25.0%
!!! TTTTGAAGATTGTATTACCT+GGG - chr5_1:48726001-48726020 Msa0734540:intron 25.0%
! TGATGATCTAATTGTTAAGT+TGG - chr5_1:48726493-48726512 Msa0734540:intron 25.0%
! AAAAATATACCTTCTCAAAC+TGG + chr5_1:48726565-48726584 None:intergenic 25.0%
! TACATGCTTAGGATATAATT+GGG - chr5_1:48726684-48726703 Msa0734540:intron 25.0%
! AATGCTTATAGTATTTCTTG+TGG - chr5_1:48727154-48727173 Msa0734540:five_prime_UTR 25.0%
! AAAAAGTTGTAGATTTAGCA+AGG - chr5_1:48727230-48727249 Msa0734540:five_prime_UTR 25.0%
! AAAAGTTGTAGATTTAGCAA+GGG - chr5_1:48727231-48727250 Msa0734540:five_prime_UTR 25.0%
!!! GAATTCTTTTTGGTTCAGTT+TGG + chr5_1:48719667-48719686 None:intergenic 30.0%
!! AGAACGTTTGGAATTCTTTT+TGG + chr5_1:48719677-48719696 None:intergenic 30.0%
AGAAAGGAATAGAATCTGAT+CGG + chr5_1:48719709-48719728 None:intergenic 30.0%
TCTATTCCTTTCTTCCTTAT+CGG - chr5_1:48719716-48719735 Msa0734540:three_prime_UTR 30.0%
TCTTCTTCCTATGTTTCTTA+AGG - chr5_1:48719758-48719777 Msa0734540:three_prime_UTR 30.0%
GTTAGCTGATTGAATTTGTA+TGG - chr5_1:48720406-48720425 Msa0734540:CDS 30.0%
!! TGATAGATCTAGGCTTTATT+TGG - chr5_1:48720850-48720869 Msa0734540:CDS 30.0%
AGAAATAGCAGATAGTTGAT+AGG - chr5_1:48720875-48720894 Msa0734540:CDS 30.0%
!!! TTGTTTTAATAACCGGCATT+TGG - chr5_1:48721019-48721038 Msa0734540:CDS 30.0%
GAAGTTTATAAATGAGAGCA+TGG + chr5_1:48721160-48721179 None:intergenic 30.0%
CTCTCATTTATAAACTTCTC+CGG - chr5_1:48721162-48721181 Msa0734540:intron 30.0%
! ACTTTTGGACAAAGTTTTCA+TGG - chr5_1:48721232-48721251 Msa0734540:CDS 30.0%
! CTTTTGGACAAAGTTTTCAT+GGG - chr5_1:48721233-48721252 Msa0734540:CDS 30.0%
! TTTTGGACAAAGTTTTCATG+GGG - chr5_1:48721234-48721253 Msa0734540:CDS 30.0%
TCAACAAATGAAGAAGCAAT+AGG - chr5_1:48721412-48721431 Msa0734540:CDS 30.0%
CAACAAATGAAGAAGCAATA+GGG - chr5_1:48721413-48721432 Msa0734540:CDS 30.0%
ATTAGAAAAAGCTGACATGT+TGG + chr5_1:48721504-48721523 None:intergenic 30.0%
AAAACGATCTTGGTAAAAAC+AGG - chr5_1:48721648-48721667 Msa0734540:CDS 30.0%
AAACGATCTTGGTAAAAACA+GGG - chr5_1:48721649-48721668 Msa0734540:CDS 30.0%
AGAACAACTTTCTAATTTCC+AGG - chr5_1:48721748-48721767 Msa0734540:CDS 30.0%
ACAATCACTCACTTGATATA+TGG + chr5_1:48721842-48721861 None:intergenic 30.0%
TCAAAATTAAGGTGTGGATA+AGG + chr5_1:48721890-48721909 None:intergenic 30.0%
GTCATTTCAAAATTAAGGTG+TGG + chr5_1:48721896-48721915 None:intergenic 30.0%
AGCATATCAACTATATAACC+TGG - chr5_1:48721998-48722017 Msa0734540:CDS 30.0%
AGGATGTGAAGATGAAATAA+AGG + chr5_1:48722096-48722115 None:intergenic 30.0%
CTAACATACTTCTCTCTATT+TGG - chr5_1:48722125-48722144 Msa0734540:intron 30.0%
TGCTAGTTATATAACAGTAC+AGG - chr5_1:48722304-48722323 Msa0734540:intron 30.0%
TGGAAGCTTAAATACACATT+GGG + chr5_1:48722423-48722442 None:intergenic 30.0%
ATGGAAGCTTAAATACACAT+TGG + chr5_1:48722424-48722443 None:intergenic 30.0%
ATATGAACCTGTATTTCGTT+TGG - chr5_1:48722510-48722529 Msa0734540:intron 30.0%
TCTATTTCCAAACGAAATAC+AGG + chr5_1:48722520-48722539 None:intergenic 30.0%
TGTATTTCGTTTGGAAATAG+AGG - chr5_1:48722519-48722538 Msa0734540:intron 30.0%
GTAATTATGTAGAATGGGAA+TGG - chr5_1:48722583-48722602 Msa0734540:intron 30.0%
GTTTATGGAAGTCATTATTG+TGG - chr5_1:48722673-48722692 Msa0734540:intron 30.0%
CACTCTGTTATTACTAATCA+TGG - chr5_1:48722838-48722857 Msa0734540:CDS 30.0%
AAGTAGTAGATTAATAAGGG+TGG + chr5_1:48722951-48722970 None:intergenic 30.0%
CCTCAAGTAGTAGATTAATA+AGG + chr5_1:48722955-48722974 None:intergenic 30.0%
CCTTATTAATCTACTACTTG+AGG - chr5_1:48722952-48722971 Msa0734540:CDS 30.0%
AATGCCAACAATAACATGAT+TGG - chr5_1:48723382-48723401 Msa0734540:five_prime_UTR 30.0%
GTTTCCAATCATGTTATTGT+TGG + chr5_1:48723389-48723408 None:intergenic 30.0%
! AAGGACAAGTTTTACTGAAA+TGG + chr5_1:48723579-48723598 None:intergenic 30.0%
TTTACTGTTGTTGATGTTGA+CGG - chr5_1:48723819-48723838 Msa0734540:intron 30.0%
AACTATGGTGCATATGAAAA+AGG - chr5_1:48724050-48724069 Msa0734540:intron 30.0%
! TTTTGAACTTCAAACCTCTA+AGG - chr5_1:48724105-48724124 Msa0734540:intron 30.0%
TTTGAACTTCAAACCTCTAA+GGG - chr5_1:48724106-48724125 Msa0734540:intron 30.0%
!! GATAAGTTCATTTCTGAGAT+AGG - chr5_1:48724218-48724237 Msa0734540:intron 30.0%
TCTATCGCCAGTAATATTAA+TGG - chr5_1:48724287-48724306 Msa0734540:intron 30.0%
CTATCGCCAGTAATATTAAT+GGG - chr5_1:48724288-48724307 Msa0734540:intron 30.0%
ATATCAAATACCTGAAACAG+TGG + chr5_1:48724464-48724483 None:intergenic 30.0%
ATGGCAAAATACTTCCATAT+GGG + chr5_1:48724548-48724567 None:intergenic 30.0%
TATGGCAAAATACTTCCATA+TGG + chr5_1:48724549-48724568 None:intergenic 30.0%
!! GCTTTTCAATATTTTGAGCA+AGG - chr5_1:48724731-48724750 Msa0734540:intron 30.0%
GCCTCATAATAAGTGAAATT+TGG - chr5_1:48724772-48724791 Msa0734540:intron 30.0%
TCATTTGATTGTTTGGATTC+TGG - chr5_1:48724804-48724823 Msa0734540:intron 30.0%
! GACCTCTTTTATAATATCCA+TGG - chr5_1:48724826-48724845 Msa0734540:intron 30.0%
! ATGCTCAGATTTCAGTTTTT+GGG - chr5_1:48725247-48725266 Msa0734540:intron 30.0%
! ATGTGTTTCATGATACCTTT+TGG - chr5_1:48725565-48725584 Msa0734540:five_prime_UTR 30.0%
! TGTGTTTCATGATACCTTTT+GGG - chr5_1:48725566-48725585 Msa0734540:five_prime_UTR 30.0%
ATTAGTATATTCACTTGGGT+TGG + chr5_1:48725898-48725917 None:intergenic 30.0%
!! CTTTTGAAGATTGTATTACC+TGG - chr5_1:48726000-48726019 Msa0734540:intron 30.0%
CAGGTAAAACTAATATACAC+CGG + chr5_1:48726081-48726100 None:intergenic 30.0%
!!! ACTATTTTTGCATCCTTCTT+TGG + chr5_1:48726416-48726435 None:intergenic 30.0%
AAAAATAGTGACAGATGAGA+AGG - chr5_1:48726427-48726446 Msa0734540:intron 30.0%
! GTGGTTTCAATAAGCAATTT+TGG - chr5_1:48726654-48726673 Msa0734540:intron 30.0%
GTACATGCTTAGGATATAAT+TGG - chr5_1:48726683-48726702 Msa0734540:intron 30.0%
AGTTTCTACCTAAAAATTGC+AGG - chr5_1:48726751-48726770 Msa0734540:intron 30.0%
! ATCATCATCCTGCAATTTTT+AGG + chr5_1:48726762-48726781 None:intergenic 30.0%
TGATGATACAAACTACCATA+TGG - chr5_1:48726775-48726794 Msa0734540:intron 30.0%
! TTTTCAATAGCATGTTTCCT+AGG - chr5_1:48727188-48727207 Msa0734540:five_prime_UTR 30.0%
GGAAATAAATGGATACTTGA+GGG + chr5_1:48727345-48727364 None:intergenic 30.0%
TTAACCAATGTTTCTTGAGA+TGG - chr5_1:48727562-48727581 Msa0734540:five_prime_UTR 30.0%
TCGGTAATAAAGCGATAAAG+AGG + chr5_1:48719613-48719632 None:intergenic 35.0%
TGGAATTGTGTAAAGAGTGA+GGG + chr5_1:48719647-48719666 None:intergenic 35.0%
TTGGAATTGTGTAAAGAGTG+AGG + chr5_1:48719648-48719667 None:intergenic 35.0%
TAGGAAGAAGAAGATGAATC+TGG + chr5_1:48719749-48719768 None:intergenic 35.0%
GAAATAATCTGCTGAATACG+CGG + chr5_1:48719904-48719923 None:intergenic 35.0%
! TTACTGTTGCTGTTGTTGAT+CGG + chr5_1:48719980-48719999 None:intergenic 35.0%
AACAGTAACAGTAACAACTC+AGG - chr5_1:48719998-48720017 Msa0734540:CDS 35.0%
TAACAGTAACAACTCAGGTT+CGG - chr5_1:48720003-48720022 Msa0734540:CDS 35.0%
!! TTTTTGGTCAAGTAGCTTAG+TGG - chr5_1:48720450-48720469 Msa0734540:CDS 35.0%
TATTGCATGATATATGCAGG+TGG + chr5_1:48720536-48720555 None:intergenic 35.0%
GGATATTGCATGATATATGC+AGG + chr5_1:48720539-48720558 None:intergenic 35.0%
TAAGCTATGAGCTACTTGTT+TGG - chr5_1:48720712-48720731 Msa0734540:CDS 35.0%
CAAAAAACGTCATAGTCTCA+CGG + chr5_1:48720738-48720757 None:intergenic 35.0%
! TTGCTTCAGTGTTCTTGTTT+AGG - chr5_1:48720755-48720774 Msa0734540:CDS 35.0%
! TGCTTCAGTGTTCTTGTTTA+GGG - chr5_1:48720756-48720775 Msa0734540:CDS 35.0%
!! TAGCAGATAGTTGATAGGTT+AGG - chr5_1:48720880-48720899 Msa0734540:CDS 35.0%
TAAGTTCATGTTCCAAATGC+CGG + chr5_1:48721034-48721053 None:intergenic 35.0%
! GCAATACAAGGCATTAGAAA+AGG + chr5_1:48721363-48721382 None:intergenic 35.0%
GCAAAGAATCTTATTCTTGC+TGG - chr5_1:48721551-48721570 Msa0734540:CDS 35.0%
! GTGTTTTCAGAAAACGATCT+TGG - chr5_1:48721638-48721657 Msa0734540:CDS 35.0%
ATCAAGTGAGTGATTGTGTA+TGG - chr5_1:48721845-48721864 Msa0734540:CDS 35.0%
GTGATTGTGTATGGAATTGT+AGG - chr5_1:48721854-48721873 Msa0734540:CDS 35.0%
!! TTCCATTGAACTTTGAGATG+AGG - chr5_1:48722438-48722457 Msa0734540:intron 35.0%
AGGCGATTCATTTGCATAAT+AGG - chr5_1:48722642-48722661 Msa0734540:intron 35.0%
TATGGAAGTCATTATTGTGG+TGG - chr5_1:48722676-48722695 Msa0734540:intron 35.0%
ACTAATCATAATAAGAGGGG+AGG - chr5_1:48722758-48722777 Msa0734540:intron 35.0%
AAGTGAGTCATAATAAGACG+AGG - chr5_1:48722789-48722808 Msa0734540:CDS 35.0%
AGTGAGTCATAATAAGACGA+GGG - chr5_1:48722790-48722809 Msa0734540:CDS 35.0%
AGCAAGTAGTGAAAAGCTAT+TGG + chr5_1:48722917-48722936 None:intergenic 35.0%
CTCACTTGTCACATATCATA+CGG - chr5_1:48723010-48723029 Msa0734540:CDS 35.0%
AGACGGTCTACAACAATATA+AGG + chr5_1:48723426-48723445 None:intergenic 35.0%
GAATTATTGTGCGTGATAGA+CGG + chr5_1:48723443-48723462 None:intergenic 35.0%
ATCACGCACAATAATTCTGA+TGG - chr5_1:48723446-48723465 Msa0734540:five_prime_UTR 35.0%
GCACTATACAACTACAAAGA+AGG + chr5_1:48723598-48723617 None:intergenic 35.0%
! ACTGAAGTTAGAGGTCTTTT+TGG - chr5_1:48723769-48723788 Msa0734540:intron 35.0%
! TGGTTCGTGTTTTGTGATTT+TGG - chr5_1:48723789-48723808 Msa0734540:intron 35.0%
! GGTTCGTGTTTTGTGATTTT+GGG - chr5_1:48723790-48723809 Msa0734540:intron 35.0%
ACATCAACAACAGTAAACTC+AGG + chr5_1:48723816-48723835 None:intergenic 35.0%
CTCTTTCATACCATGAACTT+CGG + chr5_1:48723958-48723977 None:intergenic 35.0%
GGTATGAAAGAGTTGAATGA+CGG - chr5_1:48723966-48723985 Msa0734540:intron 35.0%
TTCATATGCACCATAGTTTG+TGG + chr5_1:48724048-48724067 None:intergenic 35.0%
TATGGTGCATATGAAAAAGG+TGG - chr5_1:48724053-48724072 Msa0734540:intron 35.0%
GTTCAAAACCTTTGGTTGTT+TGG + chr5_1:48724093-48724112 None:intergenic 35.0%
! GGTTTGAAGTTCAAAACCTT+TGG + chr5_1:48724101-48724120 None:intergenic 35.0%
CTCAGAAATGAACTTATCCA+GGG + chr5_1:48724216-48724235 None:intergenic 35.0%
TCTCAGAAATGAACTTATCC+AGG + chr5_1:48724217-48724236 None:intergenic 35.0%
ATTAATGGGAACTTAGGTGA+TGG - chr5_1:48724302-48724321 Msa0734540:intron 35.0%
GAAATTTCATCCACTGTTTC+AGG - chr5_1:48724451-48724470 Msa0734540:intron 35.0%
TTGCCATAAAATTTCTCCCA+AGG - chr5_1:48724561-48724580 Msa0734540:intron 35.0%
TGCCATAAAATTTCTCCCAA+GGG - chr5_1:48724562-48724581 Msa0734540:intron 35.0%
! ATCCCTTGGGAGAAATTTTA+TGG + chr5_1:48724567-48724586 None:intergenic 35.0%
!! AATATTTTGAGCAAGGCACT+CGG - chr5_1:48724738-48724757 Msa0734540:intron 35.0%
CATGCAATACTTGAATGCTT+GGG + chr5_1:48724856-48724875 None:intergenic 35.0%
ACATGCAATACTTGAATGCT+TGG + chr5_1:48724857-48724876 None:intergenic 35.0%
ATGATATTCACCAACAGACT+AGG + chr5_1:48725007-48725026 None:intergenic 35.0%
ATAATTATAATCTCCGGGGA+GGG + chr5_1:48725071-48725090 None:intergenic 35.0%
TATAATTATAATCTCCGGGG+AGG + chr5_1:48725072-48725091 None:intergenic 35.0%
CTTTGACCAGAAGAAATGTA+AGG + chr5_1:48725098-48725117 None:intergenic 35.0%
TCTGGTCAAAGTTGTATTTG+TGG - chr5_1:48725107-48725126 Msa0734540:intron 35.0%
GCATCGTAACGACTATTTAT+TGG + chr5_1:48725231-48725250 None:intergenic 35.0%
! GATGCTCAGATTTCAGTTTT+TGG - chr5_1:48725246-48725265 Msa0734540:intron 35.0%
!! GATGCTAAAGTGTTTGTTGT+TGG - chr5_1:48725294-48725313 Msa0734540:intron 35.0%
!! AAAGTGTTTGTTGTTGGTTC+TGG - chr5_1:48725300-48725319 Msa0734540:intron 35.0%
TAGAGAAGAGTAACTTAAGC+AGG - chr5_1:48725415-48725434 Msa0734540:intron 35.0%
GAGCTTCAATATTCAGTTGA+GGG + chr5_1:48725515-48725534 None:intergenic 35.0%
AGAGCTTCAATATTCAGTTG+AGG + chr5_1:48725516-48725535 None:intergenic 35.0%
TTTCAGTTTCAGAGCTAACA+CGG + chr5_1:48725545-48725564 None:intergenic 35.0%
! AACACTCAAGTTTTCCCAAA+AGG + chr5_1:48725583-48725602 None:intergenic 35.0%
! ACCATAGTTTTCTGTTAGGT+GGG + chr5_1:48725730-48725749 None:intergenic 35.0%
AAGTATGCATTTACTTCAGC+TGG + chr5_1:48725873-48725892 None:intergenic 35.0%
CAAGCAAACATACTTAAGTC+TGG + chr5_1:48726027-48726046 None:intergenic 35.0%
TAAAAACCATGCTTGAGTGT+AGG + chr5_1:48726115-48726134 None:intergenic 35.0%
! CAAGCATGGTTTTTATTCAC+AGG - chr5_1:48726120-48726139 Msa0734540:intron 35.0%
TATAAGCTAACTGCTTCACT+CGG + chr5_1:48726166-48726185 None:intergenic 35.0%
!! GTTAGCTTATACTTTTCCTG+AGG - chr5_1:48726175-48726194 Msa0734540:intron 35.0%
!! TTGTTAAGTTGGAGAGATTG+CGG - chr5_1:48726504-48726523 Msa0734540:intron 35.0%
TATACCTTCTCAAACTGGAT+TGG + chr5_1:48726560-48726579 None:intergenic 35.0%
AGAATATTCACCATGTTGCT+TGG - chr5_1:48726600-48726619 Msa0734540:intron 35.0%
TTGGAAGTTTGTACATGCTT+AGG - chr5_1:48726673-48726692 Msa0734540:intron 35.0%
TCAAGCATCAAGATTTGAGT+TGG - chr5_1:48727053-48727072 Msa0734540:five_prime_UTR 35.0%
!! AAGATTTGAGTTGGACTGTT+TGG - chr5_1:48727062-48727081 Msa0734540:five_prime_UTR 35.0%
!! AGATTTGAGTTGGACTGTTT+GGG - chr5_1:48727063-48727082 Msa0734540:five_prime_UTR 35.0%
TAAAAGACAATCCTACTCTC+AGG - chr5_1:48727098-48727117 Msa0734540:five_prime_UTR 35.0%
AAAAGACAATCCTACTCTCA+GGG - chr5_1:48727099-48727118 Msa0734540:five_prime_UTR 35.0%
GAAACATGCTATTGAAAAGC+AGG + chr5_1:48727186-48727205 None:intergenic 35.0%
CGGAAATAAATGGATACTTG+AGG + chr5_1:48727346-48727365 None:intergenic 35.0%
AACAGCTCAACGGAAATAAA+TGG + chr5_1:48727356-48727375 None:intergenic 35.0%
ATTGGATGAAAACAGCTCAA+CGG + chr5_1:48727366-48727385 None:intergenic 35.0%
! ATGTTTAGGACACAACTGAT+TGG + chr5_1:48727384-48727403 None:intergenic 35.0%
CTCAAATATGAACTGTGAGA+CGG + chr5_1:48727486-48727505 None:intergenic 35.0%
!! TTTGAGTTGAAACGCAACTT+CGG - chr5_1:48727500-48727519 Msa0734540:intron 35.0%
TTCACCATCTCAAGAAACAT+TGG + chr5_1:48727569-48727588 None:intergenic 35.0%
!! AGTGAGGGTTTGGTTTGATT+CGG + chr5_1:48719632-48719651 None:intergenic 40.0%
TTGTGTAAAGAGTGAGGGTT+TGG + chr5_1:48719642-48719661 None:intergenic 40.0%
! AACGTACCGATAAGGAAGAA+AGG + chr5_1:48719725-48719744 None:intergenic 40.0%
! AATCTGGAAACGTACCGATA+AGG + chr5_1:48719733-48719752 None:intergenic 40.0%
AGTGACAAGAGTTTCAGTAG+CGG - chr5_1:48720064-48720083 Msa0734540:CDS 40.0%
!! TTTTGGAAATTCTAACCCGC+AGG - chr5_1:48720138-48720157 Msa0734540:CDS 40.0%
GCTAACTACTTATCAGCTCT+CGG + chr5_1:48720392-48720411 None:intergenic 40.0%
ATGTGAAGAAGTGGAATGTC+CGG - chr5_1:48720496-48720515 Msa0734540:intron 40.0%
ATGATATATGCAGGTGGAAG+AGG + chr5_1:48720530-48720549 None:intergenic 40.0%
TGAGCTAAGCTCAATTGGTA+GGG + chr5_1:48720560-48720579 None:intergenic 40.0%
TACCAATTGAGCTTAGCTCA+CGG - chr5_1:48720560-48720579 Msa0734540:intron 40.0%
! GCTTCAGTGTTCTTGTTTAG+GGG - chr5_1:48720757-48720776 Msa0734540:CDS 40.0%
! TGTTCTTGTTTAGGGGATGT+GGG - chr5_1:48720764-48720783 Msa0734540:CDS 40.0%
!! GTCAGCTTTTTCTAATGCCT+TGG - chr5_1:48721508-48721527 Msa0734540:CDS 40.0%
ATGAAGGGACTGTAGAGTTA+TGG - chr5_1:48721597-48721616 Msa0734540:CDS 40.0%
TGAAGGGACTGTAGAGTTAT+GGG - chr5_1:48721598-48721617 Msa0734540:CDS 40.0%
TGTCAAGCTTAGTACAAGCA+CGG + chr5_1:48721714-48721733 None:intergenic 40.0%
AATGAGAGCTGAATCTGTAC+AGG - chr5_1:48722246-48722265 Msa0734540:intron 40.0%
ATGAGAGCTGAATCTGTACA+GGG - chr5_1:48722247-48722266 Msa0734540:intron 40.0%
GTGGGTACAACACATATACT+TGG - chr5_1:48722269-48722288 Msa0734540:intron 40.0%
CACCTCATCTCAAAGTTCAA+TGG + chr5_1:48722443-48722462 None:intergenic 40.0%
! AACTTGCAGTGTTCTAGTTG+TGG + chr5_1:48722557-48722576 None:intergenic 40.0%
AAGTCATTATTGTGGTGGCT+AGG - chr5_1:48722681-48722700 Msa0734540:intron 40.0%
AGTCATTATTGTGGTGGCTA+GGG - chr5_1:48722682-48722701 Msa0734540:intron 40.0%
GTGAGTCATAATAAGACGAG+GGG - chr5_1:48722791-48722810 Msa0734540:CDS 40.0%
!! GAGGGGCATATTATTTTACG+AGG - chr5_1:48722808-48722827 Msa0734540:CDS 40.0%
! AGCTTTCTCAAGACTGACTT+CGG + chr5_1:48723695-48723714 None:intergenic 40.0%
GACGCAATTATTCCAGTATG+TGG + chr5_1:48723852-48723871 None:intergenic 40.0%
TGATGAGAGACTTGAGTTTC+AGG - chr5_1:48723911-48723930 Msa0734540:intron 40.0%
GAAGAAGACACCACAAACTA+TGG - chr5_1:48724035-48724054 Msa0734540:intron 40.0%
AAAAGGTGGTATTGTCACAC+AGG - chr5_1:48724067-48724086 Msa0734540:intron 40.0%
GCAAATTGCTGTAGAAGCTT+GGG + chr5_1:48724347-48724366 None:intergenic 40.0%
CTTCTACAGCAATTTGCCTT+TGG - chr5_1:48724350-48724369 Msa0734540:intron 40.0%
TCCTACAATTCCACCAAACA+TGG + chr5_1:48724405-48724424 None:intergenic 40.0%
AAAGAACACGCAAATCCCTT+GGG + chr5_1:48724580-48724599 None:intergenic 40.0%
AAAAGAACACGCAAATCCCT+TGG + chr5_1:48724581-48724600 None:intergenic 40.0%
TTAGACAGGGATTGTTGTAC+AGG + chr5_1:48724891-48724910 None:intergenic 40.0%
GTACAACAATCCCTGTCTAA+CGG - chr5_1:48724891-48724910 Msa0734540:intron 40.0%
TATGACAATGCCTCAAGGTA+TGG + chr5_1:48724921-48724940 None:intergenic 40.0%
ACTCTTATGACAATGCCTCA+AGG + chr5_1:48724926-48724945 None:intergenic 40.0%
TAATTATAATCTCCGGGGAG+GGG + chr5_1:48725070-48725089 None:intergenic 40.0%
! GTTTTTCTACTTCGACTCTG+TGG - chr5_1:48725164-48725183 Msa0734540:intron 40.0%
! TTAGGATGCAATGGTTCTGT+CGG + chr5_1:48725198-48725217 None:intergenic 40.0%
TCCACAAGAAACTCCCATTA+AGG + chr5_1:48725358-48725377 None:intergenic 40.0%
TTAATGGGAGTTTCTTGTGG+AGG - chr5_1:48725357-48725376 Msa0734540:intron 40.0%
CAATATTCCAATCACGGAAG+AGG + chr5_1:48725446-48725465 None:intergenic 40.0%
CTCTTCCGTGATTGGAATAT+TGG - chr5_1:48725444-48725463 Msa0734540:intron 40.0%
TGTGAATGCAAGACTATACG+TGG - chr5_1:48725623-48725642 Msa0734540:five_prime_UTR 40.0%
! GAAGTGGTTTCTGGAAATAC+AGG + chr5_1:48725659-48725678 None:intergenic 40.0%
CAGATTCAAGAAGTGGTTTC+TGG + chr5_1:48725668-48725687 None:intergenic 40.0%
CAGAAACCACTTCTTGAATC+TGG - chr5_1:48725666-48725685 Msa0734540:five_prime_UTR 40.0%
AGAGTTCCAGATTCAAGAAG+TGG + chr5_1:48725675-48725694 None:intergenic 40.0%
! CTTCTTGAATCTGGAACTCT+TGG - chr5_1:48725675-48725694 Msa0734540:intron 40.0%
AGCTAAATGCAATACCCAGA+TGG - chr5_1:48725698-48725717 Msa0734540:intron 40.0%
! CCATAGTTTTCTGTTAGGTG+GGG + chr5_1:48725729-48725748 None:intergenic 40.0%
! CACCATAGTTTTCTGTTAGG+TGG + chr5_1:48725731-48725750 None:intergenic 40.0%
! AGGCACCATAGTTTTCTGTT+AGG + chr5_1:48725734-48725753 None:intergenic 40.0%
AATGAATGCACGGTACACAT+CGG + chr5_1:48725783-48725802 None:intergenic 40.0%
GTTGTGTGGAAATGAATGCA+CGG + chr5_1:48725793-48725812 None:intergenic 40.0%
ACTAATGCAATGAAGAACGC+TGG - chr5_1:48725912-48725931 Msa0734540:intron 40.0%
AGTGTAGGACATACAGATAC+AGG + chr5_1:48726100-48726119 None:intergenic 40.0%
ATCAGAAACTGGAGATGACT+TGG + chr5_1:48726281-48726300 None:intergenic 40.0%
AAGTCATCTCCAGTTTCTGA+TGG - chr5_1:48726280-48726299 Msa0734540:intron 40.0%
ATACTACGCGCAGAAACATT+TGG - chr5_1:48726311-48726330 Msa0734540:intron 40.0%
GGTGAAAAACCCTATGAAGT+TGG - chr5_1:48726352-48726371 Msa0734540:intron 40.0%
CAACTTCTGCCAACTTCATA+GGG + chr5_1:48726364-48726383 None:intergenic 40.0%
ACAACTTCTGCCAACTTCAT+AGG + chr5_1:48726365-48726384 None:intergenic 40.0%
TGAAGGCCAAGTTTATTGCT+GGG - chr5_1:48726861-48726880 Msa0734540:intron 40.0%
! TCTGGAGTTGTACAAAGCTT+TGG - chr5_1:48726937-48726956 Msa0734540:intron 40.0%
!! GAGTTGTACAAAGCTTTGGA+TGG - chr5_1:48726941-48726960 Msa0734540:intron 40.0%
!! TTGTACAAAGCTTTGGATGG+AGG - chr5_1:48726944-48726963 Msa0734540:intron 40.0%
!! TGTACAAAGCTTTGGATGGA+GGG - chr5_1:48726945-48726964 Msa0734540:intron 40.0%
!! CTAAGTTGGCAAAGGTGTTT+CGG + chr5_1:48726988-48727007 None:intergenic 40.0%
! CTTGATTGGCTGAAGGAAAA+AGG - chr5_1:48727127-48727146 Msa0734540:five_prime_UTR 40.0%
GTATGAAGGGATTTCCATCT+TGG + chr5_1:48727263-48727282 None:intergenic 40.0%
CAACAACATCTATGTGACGA+CGG + chr5_1:48727285-48727304 None:intergenic 40.0%
TCGTCACATAGATGTTGTTG+TGG - chr5_1:48727285-48727304 Msa0734540:five_prime_UTR 40.0%
CCTTCGCTAACTCTCTTTCT+TGG + chr5_1:48719938-48719957 None:intergenic 45.0%
CCAAGAAAGAGAGTTAGCGA+AGG - chr5_1:48719935-48719954 Msa0734540:CDS 45.0%
! CAACTCAGGTTCGGTTAAGA+AGG - chr5_1:48720012-48720031 Msa0734540:CDS 45.0%
GGCGATAACAGTAACAGTAC+CGG - chr5_1:48720088-48720107 Msa0734540:CDS 45.0%
GCGATAACAGTAACAGTACC+GGG - chr5_1:48720089-48720108 Msa0734540:CDS 45.0%
! CAGTACCGGGAATTTGATTG+CGG - chr5_1:48720102-48720121 Msa0734540:CDS 45.0%
AGATCCTCATCAATCTCCTG+CGG + chr5_1:48720157-48720176 None:intergenic 45.0%
TTGATGAGGATCTGCATAGC+AGG - chr5_1:48720164-48720183 Msa0734540:CDS 45.0%
TGTATGGTAGGGAGACTATG+AGG - chr5_1:48720197-48720216 Msa0734540:CDS 45.0%
TGTGAAGAAGTGGAATGTCC+GGG - chr5_1:48720497-48720516 Msa0734540:intron 45.0%
GTGAGCTAAGCTCAATTGGT+AGG + chr5_1:48720561-48720580 None:intergenic 45.0%
ACCAATTGAGCTTAGCTCAC+GGG - chr5_1:48720561-48720580 Msa0734540:intron 45.0%
! GTGTTCTTGTTTAGGGGATG+TGG - chr5_1:48720763-48720782 Msa0734540:CDS 45.0%
! GTTCTTGTTTAGGGGATGTG+GGG - chr5_1:48720765-48720784 Msa0734540:CDS 45.0%
ACGCAGTCAATTGCAATCCA+AGG + chr5_1:48721528-48721547 None:intergenic 45.0%
TCTGTAACCTTGCACGATGA+AGG - chr5_1:48721581-48721600 Msa0734540:CDS 45.0%
CTGTAACCTTGCACGATGAA+GGG - chr5_1:48721582-48721601 Msa0734540:CDS 45.0%
TCTTGGTAAAAACAGGGCAG+TGG - chr5_1:48721655-48721674 Msa0734540:CDS 45.0%
!! AGAGCAAAAGTAGAAGCACC+TGG + chr5_1:48721769-48721788 None:intergenic 45.0%
TTCACTACTTGCTCCTTGCT+TGG - chr5_1:48722924-48722943 Msa0734540:CDS 45.0%
TCACTACTTGCTCCTTGCTT+GGG - chr5_1:48722925-48722944 Msa0734540:CDS 45.0%
AAGGAAGAATGGCTGCAAAC+AGG - chr5_1:48723152-48723171 Msa0734540:CDS 45.0%
AGGAAGAATGGCTGCAAACA+GGG - chr5_1:48723153-48723172 Msa0734540:CDS 45.0%
TGTTGTTGATGTTGACGGAG+AGG - chr5_1:48723824-48723843 Msa0734540:intron 45.0%
CAACGCAAGATACTACAGCA+GGG + chr5_1:48723890-48723909 None:intergenic 45.0%
TCAACGCAAGATACTACAGC+AGG + chr5_1:48723891-48723910 None:intergenic 45.0%
GAGAGACTTGAGTTTCAGGA+TGG - chr5_1:48723915-48723934 Msa0734540:intron 45.0%
GAACTTCGGAGAACACAACA+AGG + chr5_1:48723944-48723963 None:intergenic 45.0%
GTTGTGTTCTCCGAAGTTCA+TGG - chr5_1:48723945-48723964 Msa0734540:intron 45.0%
TCATTGAGTGCTTCCCTTAG+AGG + chr5_1:48724122-48724141 None:intergenic 45.0%
TCGCTAAGAAGAAATTCGCC+TGG + chr5_1:48724146-48724165 None:intergenic 45.0%
ATGCTAGATGCAGTAGAGGT+GGG + chr5_1:48724187-48724206 None:intergenic 45.0%
AATGCTAGATGCAGTAGAGG+TGG + chr5_1:48724188-48724207 None:intergenic 45.0%
TGGAATGCTAGATGCAGTAG+AGG + chr5_1:48724191-48724210 None:intergenic 45.0%
TCTACTGCATCTAGCATTCC+AGG - chr5_1:48724190-48724209 Msa0734540:intron 45.0%
AAATGAACTTATCCAGGGCC+TGG + chr5_1:48724211-48724230 None:intergenic 45.0%
!! ATGGGAACTTAGGTGATGGA+AGG - chr5_1:48724306-48724325 Msa0734540:intron 45.0%
!! GAACTTAGGTGATGGAAGGT+TGG - chr5_1:48724310-48724329 Msa0734540:intron 45.0%
GGCAAATTGCTGTAGAAGCT+TGG + chr5_1:48724348-48724367 None:intergenic 45.0%
!! AGCAATTTGCCTTTGGTGCT+AGG - chr5_1:48724357-48724376 Msa0734540:intron 45.0%
!! GCAATTTGCCTTTGGTGCTA+GGG - chr5_1:48724358-48724377 Msa0734540:intron 45.0%
! TAGGGCAGTATTGAACCCTA+TGG - chr5_1:48724376-48724395 Msa0734540:intron 45.0%
! GCCATGTTTGGTGGAATTGT+AGG - chr5_1:48724401-48724420 Msa0734540:intron 45.0%
TGGTGGAATTGTAGGACAAG+AGG - chr5_1:48724409-48724428 Msa0734540:intron 45.0%
AGGTTGTCAAAGCATGCTCT+GGG - chr5_1:48724429-48724448 Msa0734540:intron 45.0%
GCAAATGACGTTAGCCCATA+TGG - chr5_1:48724531-48724550 Msa0734540:intron 45.0%
TTGAATGCTTGGGAGAACCA+TGG + chr5_1:48724846-48724865 None:intergenic 45.0%
! GTATGGACTACCGTTAGACA+GGG + chr5_1:48724904-48724923 None:intergenic 45.0%
TAACGGTAGTCCATACCTTG+AGG - chr5_1:48724908-48724927 Msa0734540:intron 45.0%
AATTATAATCTCCGGGGAGG+GGG + chr5_1:48725069-48725088 None:intergenic 45.0%
GCCTTAATGGGAGTTTCTTG+TGG - chr5_1:48725354-48725373 Msa0734540:intron 45.0%
GAGTTTCTTGTGGAGGTCAA+GGG - chr5_1:48725364-48725383 Msa0734540:intron 45.0%
CCTGGCCAATATTCCAATCA+CGG + chr5_1:48725452-48725471 None:intergenic 45.0%
CCCCACCTAACAGAAAACTA+TGG - chr5_1:48725726-48725745 Msa0734540:intron 45.0%
TTTCTCAGGTGGATCTCTTG+AGG + chr5_1:48725754-48725773 None:intergenic 45.0%
AAGCAGTGGTCAATGTTGTG+TGG + chr5_1:48725807-48725826 None:intergenic 45.0%
ACATTGACCACTGCTTGACT+TGG - chr5_1:48725811-48725830 Msa0734540:intron 45.0%
CATTGACCACTGCTTGACTT+GGG - chr5_1:48725812-48725831 Msa0734540:intron 45.0%
CGTTCTTGAATGCTTGGACA+AGG - chr5_1:48725965-48725984 Msa0734540:intron 45.0%
AACATACTTAAGTCTGGCCC+AGG + chr5_1:48726021-48726040 None:intergenic 45.0%
GTATGTCCTACACTCAAGCA+TGG - chr5_1:48726106-48726125 Msa0734540:intron 45.0%
!! CTAGTACTGGAGCTCCATTT+TGG - chr5_1:48726207-48726226 Msa0734540:intron 45.0%
!! CATTTTGGTCTGCACCGAAA+CGG - chr5_1:48726222-48726241 Msa0734540:intron 45.0%
! TGTTTCTGCGCGTAGTATAG+AGG + chr5_1:48726309-48726328 None:intergenic 45.0%
! TAGGGTTTTTCACCCAGTCA+GGG + chr5_1:48726346-48726365 None:intergenic 45.0%
! ATAGGGTTTTTCACCCAGTC+AGG + chr5_1:48726347-48726366 None:intergenic 45.0%
ACCTGACTTTCAGCCAAAGA+AGG - chr5_1:48726400-48726419 Msa0734540:intron 45.0%
TCCTTCTTTGGCTGAAAGTC+AGG + chr5_1:48726404-48726423 None:intergenic 45.0%
GAAGCCAATCCAGTTTGAGA+AGG - chr5_1:48726553-48726572 Msa0734540:intron 45.0%
AAGGACTTCACCAAGCAACA+TGG + chr5_1:48726613-48726632 None:intergenic 45.0%
TACCATATGGACGTGATAGC+TGG - chr5_1:48726788-48726807 Msa0734540:intron 45.0%
ACCATATGGACGTGATAGCT+GGG - chr5_1:48726789-48726808 Msa0734540:intron 45.0%
GTAATTGCGTGCTCTCATGT+TGG + chr5_1:48726819-48726838 None:intergenic 45.0%
TCCTGAAGTTGACAAGCTGA+AGG - chr5_1:48726844-48726863 Msa0734540:intron 45.0%
CTGAAGGCCAAGTTTATTGC+TGG - chr5_1:48726860-48726879 Msa0734540:intron 45.0%
GATTGCAACCTCAACTGCTA+TGG - chr5_1:48726898-48726917 Msa0734540:intron 45.0%
TGTACAACTCCAGACAGACA+AGG + chr5_1:48726931-48726950 None:intergenic 45.0%
AAAGAGAGGCAGTGCTAAGT+TGG + chr5_1:48727002-48727021 None:intergenic 45.0%
! TGATGCTTGATGACCTTTGC+CGG + chr5_1:48727043-48727062 None:intergenic 45.0%
TGTTTCCTAGGCACAAAGAG+CGG - chr5_1:48727200-48727219 Msa0734540:five_prime_UTR 45.0%
AGCAAGGGATATTGCCAAGA+TGG - chr5_1:48727246-48727265 Msa0734540:five_prime_UTR 45.0%
CTATGTGACGACGGTATGAA+GGG + chr5_1:48727276-48727295 None:intergenic 45.0%
TCTATGTGACGACGGTATGA+AGG + chr5_1:48727277-48727296 None:intergenic 45.0%
! AGATGTTGTTGTGGCTTGTG+AGG - chr5_1:48727294-48727313 Msa0734540:five_prime_UTR 45.0%
TCCATATTCGTAGTGCCTTC+AGG - chr5_1:48727439-48727458 Msa0734540:intron 45.0%
!!! AAAATGTTATTTTTATTTTT+TGG - chr5_1:48720434-48720453 Msa0734540:CDS 5.0%
!!! ATTTATTTTATTATTTTAAC+TGG + chr5_1:48722474-48722493 None:intergenic 5.0%
CGGCAATGAGAGAGAACGTT+TGG + chr5_1:48719689-48719708 None:intergenic 50.0%
GACAAGAGTTTCAGTAGCGG+CGG - chr5_1:48720067-48720086 Msa0734540:CDS 50.0%
! TTTGATTGCGGCGTCGAGTA+TGG - chr5_1:48720114-48720133 Msa0734540:CDS 50.0%
TAACCCGCAGGAGATTGATG+AGG - chr5_1:48720150-48720169 Msa0734540:CDS 50.0%
GATCCTCATCAATCTCCTGC+GGG + chr5_1:48720156-48720175 None:intergenic 50.0%
!! GCAGCTTGCTGTGTATGGTA+GGG - chr5_1:48720186-48720205 Msa0734540:CDS 50.0%
ATGGTAGGGAGACTATGAGG+AGG - chr5_1:48720200-48720219 Msa0734540:CDS 50.0%
! GCGAGTAGCGTTCTTGTTTC+CGG - chr5_1:48720229-48720248 Msa0734540:CDS 50.0%
! CGAGTAGCGTTCTTGTTTCC+GGG - chr5_1:48720230-48720249 Msa0734540:CDS 50.0%
TGGTCAAGTAGCTTAGTGGC+TGG - chr5_1:48720454-48720473 Msa0734540:intron 50.0%
GTGAAGAAGTGGAATGTCCG+GGG - chr5_1:48720498-48720517 Msa0734540:intron 50.0%
CCAATTGAGCTTAGCTCACG+GGG - chr5_1:48720562-48720581 Msa0734540:intron 50.0%
!! TGGGGACTTGGTGTTGAGAT+TGG - chr5_1:48720783-48720802 Msa0734540:CDS 50.0%
TACAGTCCCTTCATCGTGCA+AGG + chr5_1:48721591-48721610 None:intergenic 50.0%
GGCTTCTGTCAGTAAGCTTC+AGG - chr5_1:48721676-48721695 Msa0734540:CDS 50.0%
AGAGCTGAATCTGTACAGGG+TGG - chr5_1:48722250-48722269 Msa0734540:intron 50.0%
GAGCTGAATCTGTACAGGGT+GGG - chr5_1:48722251-48722270 Msa0734540:intron 50.0%
ATTGTGGTGGCTAGGGAGTA+TGG - chr5_1:48722689-48722708 Msa0734540:intron 50.0%
TAATAAGGGTGGCCCAAGCA+AGG + chr5_1:48722940-48722959 None:intergenic 50.0%
CAATAGGAGGCTGATGACTG+TGG + chr5_1:48723738-48723757 None:intergenic 50.0%
AGCAGGGTTGTCATTGCTGA+TGG + chr5_1:48723874-48723893 None:intergenic 50.0%
CACACAGGCCAAACAACCAA+AGG - chr5_1:48724082-48724101 Msa0734540:intron 50.0%
!! AGGGAAGCACTCAATGATCC+AGG - chr5_1:48724125-48724144 Msa0734540:intron 50.0%
ATCTTCCTCTGAACCAGCGA+CGG + chr5_1:48724252-48724271 None:intergenic 50.0%
CAATACTGCCCTAGCACCAA+AGG + chr5_1:48724369-48724388 None:intergenic 50.0%
AACCCTATGGCTGCCATGTT+TGG - chr5_1:48724389-48724408 Msa0734540:intron 50.0%
CACCAAACATGGCAGCCATA+GGG + chr5_1:48724394-48724413 None:intergenic 50.0%
GAGGTTGTCAAAGCATGCTC+TGG - chr5_1:48724428-48724447 Msa0734540:intron 50.0%
GGGATTGTTGTACAGGCAGA+GGG + chr5_1:48724884-48724903 None:intergenic 50.0%
AGGGATTGTTGTACAGGCAG+AGG + chr5_1:48724885-48724904 None:intergenic 50.0%
! GGTATGGACTACCGTTAGAC+AGG + chr5_1:48724905-48724924 None:intergenic 50.0%
GGGGTAAACTGAATACGGCA+AGG + chr5_1:48725050-48725069 None:intergenic 50.0%
GGGAGGGGGTAAACTGAATA+CGG + chr5_1:48725055-48725074 None:intergenic 50.0%
TATTCAGTTTACCCCCTCCC+CGG - chr5_1:48725055-48725074 Msa0734540:intron 50.0%
!! TGTTGTTGGTTCTGGTGCAC+TGG - chr5_1:48725308-48725327 Msa0734540:intron 50.0%
!! GTTGTTGGTTCTGGTGCACT+GGG - chr5_1:48725309-48725328 Msa0734540:intron 50.0%
!! TTGTTGGTTCTGGTGCACTG+GGG - chr5_1:48725310-48725329 Msa0734540:intron 50.0%
GGAGTTTCTTGTGGAGGTCA+AGG - chr5_1:48725363-48725382 Msa0734540:intron 50.0%
CCGTGATTGGAATATTGGCC+AGG - chr5_1:48725449-48725468 Msa0734540:intron 50.0%
TAGGTGGGGAATGACCATCT+GGG + chr5_1:48725715-48725734 None:intergenic 50.0%
TTAGGTGGGGAATGACCATC+TGG + chr5_1:48725716-48725735 None:intergenic 50.0%
! ATCGGTGCTTGTTTCTCAGG+TGG + chr5_1:48725765-48725784 None:intergenic 50.0%
! CACATCGGTGCTTGTTTCTC+AGG + chr5_1:48725768-48725787 None:intergenic 50.0%
TTGGGCTCGATCTGAGTTTG+AGG - chr5_1:48725830-48725849 Msa0734540:intron 50.0%
TGGGCTCGATCTGAGTTTGA+GGG - chr5_1:48725831-48725850 Msa0734540:intron 50.0%
TGCTCAGGCACGGGATAATT+TGG - chr5_1:48725938-48725957 Msa0734540:intron 50.0%
! CTTGGACAAGGAGAAGTGTG+AGG - chr5_1:48725977-48725996 Msa0734540:intron 50.0%
GTACTAGTTGCAGCATCCTC+AGG + chr5_1:48726194-48726213 None:intergenic 50.0%
GAGGATGCTGCAACTAGTAC+TGG - chr5_1:48726194-48726213 Msa0734540:intron 50.0%
! CGTTTCGGTGCAGACCAAAA+TGG + chr5_1:48726224-48726243 None:intergenic 50.0%
! GAGATGACTTGGATCAGAGG+AGG + chr5_1:48726270-48726289 None:intergenic 50.0%
! CTGGAGATGACTTGGATCAG+AGG + chr5_1:48726273-48726292 None:intergenic 50.0%
TAGAGGCTGCCATCAGAAAC+TGG + chr5_1:48726292-48726311 None:intergenic 50.0%
! TTTTCACCCAGTCAGGGGTA+GGG + chr5_1:48726340-48726359 None:intergenic 50.0%
! TTTTTCACCCAGTCAGGGGT+AGG + chr5_1:48726341-48726360 None:intergenic 50.0%
! AGGGTTTTTCACCCAGTCAG+GGG + chr5_1:48726345-48726364 None:intergenic 50.0%
CACAGAAGCAGTAGAGAGAC+TGG + chr5_1:48726456-48726475 None:intergenic 50.0%
CAGTCTCTCTACTGCTTCTG+TGG - chr5_1:48726454-48726473 Msa0734540:intron 50.0%
TTGCGGTCAAATCTGCAACC+AGG - chr5_1:48726521-48726540 Msa0734540:intron 50.0%
CAAATCTGCAACCAGGCTTC+AGG - chr5_1:48726528-48726547 Msa0734540:intron 50.0%
! ATTGGCTTCATCCTGAAGCC+TGG + chr5_1:48726542-48726561 None:intergenic 50.0%
GCCTTCAGCTTGTCAACTTC+AGG + chr5_1:48726848-48726867 None:intergenic 50.0%
AGGCCAAGTTTATTGCTGGG+CGG - chr5_1:48726864-48726883 Msa0734540:intron 50.0%
GATCCGCCCAGCAATAAACT+TGG + chr5_1:48726870-48726889 None:intergenic 50.0%
! AGGCAGTGCTAAGTTGGCAA+AGG + chr5_1:48726996-48727015 None:intergenic 50.0%
! AGCACTGCCTCTCTTTTCCA+TGG - chr5_1:48727006-48727025 Msa0734540:five_prime_UTR 50.0%
! TTGATGACCTTTGCCGGAAC+TGG + chr5_1:48727037-48727056 None:intergenic 50.0%
! GTTGGACTGTTTGGGACAGA+TGG - chr5_1:48727071-48727090 Msa0734540:five_prime_UTR 50.0%
TCAAGAAGCTCCCTGAGAGT+AGG + chr5_1:48727112-48727131 None:intergenic 50.0%
CTCTCAGGGAGCTTCTTGAT+TGG - chr5_1:48727113-48727132 Msa0734540:five_prime_UTR 50.0%
! GGAGCTTCTTGATTGGCTGA+AGG - chr5_1:48727120-48727139 Msa0734540:five_prime_UTR 50.0%
!! GCCTGAAGGCACTACGAATA+TGG + chr5_1:48727443-48727462 None:intergenic 50.0%
ATTCGTAGTGCCTTCAGGCA+AGG - chr5_1:48727444-48727463 Msa0734540:intron 50.0%
ATGTTTGTCGCCTTGCCTGA+AGG + chr5_1:48727457-48727476 None:intergenic 50.0%
! CAGGTTCGGTTAAGAAGGCG+CGG - chr5_1:48720017-48720036 Msa0734540:CDS 55.0%
! TTCGGTTAAGAAGGCGCGGA+TGG - chr5_1:48720021-48720040 Msa0734540:CDS 55.0%
! TCGGTTAAGAAGGCGCGGAT+GGG - chr5_1:48720022-48720041 Msa0734540:CDS 55.0%
CGACGCCGCAATCAAATTCC+CGG + chr5_1:48720110-48720129 None:intergenic 55.0%
!! AGCAGGCAGCTTGCTGTGTA+TGG - chr5_1:48720181-48720200 Msa0734540:CDS 55.0%
!! GGCAGCTTGCTGTGTATGGT+AGG - chr5_1:48720185-48720204 Msa0734540:CDS 55.0%
! GTTCTTGTTTCCGGGATGCG+AGG - chr5_1:48720238-48720257 Msa0734540:CDS 55.0%
!! CGAGGACTTGGTGCTGAGAT+TGG - chr5_1:48720256-48720275 Msa0734540:CDS 55.0%
CCCCGTGAGCTAAGCTCAAT+TGG + chr5_1:48720565-48720584 None:intergenic 55.0%
GTTTAGGGGATGTGGGGACT+TGG - chr5_1:48720771-48720790 Msa0734540:CDS 55.0%
GACGGAGAGGAACCACATAC+TGG - chr5_1:48723837-48723856 Msa0734540:intron 55.0%
TCTTCCTCTGAACCAGCGAC+GGG + chr5_1:48724251-48724270 None:intergenic 55.0%
CCACCAAACATGGCAGCCAT+AGG + chr5_1:48724395-48724414 None:intergenic 55.0%
CCTATGGCTGCCATGTTTGG+TGG - chr5_1:48724392-48724411 Msa0734540:intron 55.0%
GGCAGTTCCTCTTCCGTGAT+TGG - chr5_1:48725436-48725455 Msa0734540:intron 55.0%
AGCAGCTGTTGCAGCAACTG+TGG + chr5_1:48725481-48725500 None:intergenic 55.0%
ATCGAGCCCAAGTCAAGCAG+TGG + chr5_1:48725821-48725840 None:intergenic 55.0%
! GAAGAACGCTGGTGATGCTC+AGG - chr5_1:48725923-48725942 Msa0734540:intron 55.0%
GGAGCGCGTTCTTGAATGCT+TGG - chr5_1:48725959-48725978 Msa0734540:intron 55.0%
AGTGGACGAGGGAACCGTTT+CGG + chr5_1:48726239-48726258 None:intergenic 55.0%
AGGAGAACTGCAGTGGACGA+GGG + chr5_1:48726250-48726269 None:intergenic 55.0%
TCAGAGGAGGAGAACTGCAG+TGG + chr5_1:48726257-48726276 None:intergenic 55.0%
TTGGTATCCCTACCCCTGAC+TGG - chr5_1:48726330-48726349 Msa0734540:intron 55.0%
TGGTATCCCTACCCCTGACT+GGG - chr5_1:48726331-48726350 Msa0734540:intron 55.0%
GCCCAGCTATCACGTCCATA+TGG + chr5_1:48726793-48726812 None:intergenic 55.0%
GCAGTTGAGGTTGCAATCGC+TGG + chr5_1:48726896-48726915 None:intergenic 55.0%
ACCTCAACTGCTATGGCCAC+TGG - chr5_1:48726905-48726924 Msa0734540:intron 55.0%
! GGATGGAGGGCACAAACTTG+AGG - chr5_1:48726958-48726977 Msa0734540:intron 55.0%
GGCTCAGCCATGGAAAAGAG+AGG + chr5_1:48727016-48727035 None:intergenic 55.0%
TTCCATGGCTGAGCCAGTTC+CGG - chr5_1:48727021-48727040 Msa0734540:five_prime_UTR 55.0%
TCCTAGGCACAAAGAGCGGA+TGG - chr5_1:48727204-48727223 Msa0734540:five_prime_UTR 55.0%
TCCATCCGCTCTTTGTGCCT+AGG + chr5_1:48727208-48727227 None:intergenic 55.0%
!! GCGGCGTCGAGTATGGCTTT+TGG - chr5_1:48720121-48720140 Msa0734540:CDS 60.0%
GTTTCCGGGATGCGAGGACT+TGG - chr5_1:48720244-48720263 Msa0734540:CDS 60.0%
AGCACCAAGTCCTCGCATCC+CGG + chr5_1:48720251-48720270 None:intergenic 60.0%
GGTGGAAGAGGTTCGAACCC+CGG + chr5_1:48720518-48720537 None:intergenic 60.0%
GCATCTAGCATTCCAGGCCC+TGG - chr5_1:48724196-48724215 Msa0734540:intron 60.0%
CTTCCTCTGAACCAGCGACG+GGG + chr5_1:48724250-48724269 None:intergenic 60.0%
CAGCAACTGTGGACTTCGCC+TGG + chr5_1:48725470-48725489 None:intergenic 60.0%
! ACGCTGGTGATGCTCAGGCA+CGG - chr5_1:48725928-48725947 Msa0734540:intron 60.0%
GAGGAGAACTGCAGTGGACG+AGG + chr5_1:48726251-48726270 None:intergenic 60.0%
GCCAGTGGCCATAGCAGTTG+AGG + chr5_1:48726909-48726928 None:intergenic 60.0%
CTCCAGACAGACAAGGCCAG+TGG + chr5_1:48726924-48726943 None:intergenic 60.0%
CTGAACCAGCGACGGGGAAG+CGG + chr5_1:48724244-48724263 None:intergenic 65.0%
!! CTTCCCCGTCGCTGGTTCAG+AGG - chr5_1:48724244-48724263 Msa0734540:intron 65.0%
! CGCTGGTGATGCTCAGGCAC+GGG - chr5_1:48725929-48725948 Msa0734540:intron 65.0%
!! GGCCACTGGCCTTGTCTGTC+TGG - chr5_1:48726919-48726938 Msa0734540:intron 65.0%
! TGCCGGAACTGGCTCAGCCA+TGG + chr5_1:48727026-48727045 None:intergenic 65.0%
GGCTGAGCCAGTTCCGGCAA+AGG - chr5_1:48727027-48727046 Msa0734540:five_prime_UTR 65.0%
ATAGGCCGCTTCCCCGTCGC+TGG - chr5_1:48724236-48724255 Msa0734540:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 48719610 48727634 48719610 ID=Msa0734540;Name=Msa0734540
chr5_1 mRNA 48719610 48727634 48719610 ID=Msa0734540-mRNA-1;Parent=Msa0734540;Name=Msa0734540-mRNA-1;_AED=0.25;_eAED=0.25;_QI=998|1|1|1|0.83|0.57|7|265|800
chr5_1 exon 48719610 48720471 48719610 ID=Msa0734540-mRNA-1:exon:13923;Parent=Msa0734540-mRNA-1
chr5_1 exon 48720670 48721102 48720670 ID=Msa0734540-mRNA-1:exon:13922;Parent=Msa0734540-mRNA-1
chr5_1 exon 48721211 48722079 48721211 ID=Msa0734540-mRNA-1:exon:13921;Parent=Msa0734540-mRNA-1
chr5_1 exon 48722772 48723565 48722772 ID=Msa0734540-mRNA-1:exon:13920;Parent=Msa0734540-mRNA-1
chr5_1 exon 48725475 48725692 48725475 ID=Msa0734540-mRNA-1:exon:13919;Parent=Msa0734540-mRNA-1
chr5_1 exon 48726967 48727328 48726967 ID=Msa0734540-mRNA-1:exon:13918;Parent=Msa0734540-mRNA-1
chr5_1 exon 48727507 48727634 48727507 ID=Msa0734540-mRNA-1:exon:13917;Parent=Msa0734540-mRNA-1
chr5_1 five_prime_UTR 48727507 48727634 48727507 ID=Msa0734540-mRNA-1:five_prime_utr;Parent=Msa0734540-mRNA-1
chr5_1 five_prime_UTR 48726967 48727328 48726967 ID=Msa0734540-mRNA-1:five_prime_utr;Parent=Msa0734540-mRNA-1
chr5_1 five_prime_UTR 48725475 48725692 48725475 ID=Msa0734540-mRNA-1:five_prime_utr;Parent=Msa0734540-mRNA-1
chr5_1 five_prime_UTR 48723276 48723565 48723276 ID=Msa0734540-mRNA-1:five_prime_utr;Parent=Msa0734540-mRNA-1
chr5_1 CDS 48722772 48723275 48722772 ID=Msa0734540-mRNA-1:cds;Parent=Msa0734540-mRNA-1
chr5_1 CDS 48721211 48722079 48721211 ID=Msa0734540-mRNA-1:cds;Parent=Msa0734540-mRNA-1
chr5_1 CDS 48720670 48721102 48720670 ID=Msa0734540-mRNA-1:cds;Parent=Msa0734540-mRNA-1
chr5_1 CDS 48719875 48720471 48719875 ID=Msa0734540-mRNA-1:cds;Parent=Msa0734540-mRNA-1
chr5_1 three_prime_UTR 48719610 48719874 48719610 ID=Msa0734540-mRNA-1:three_prime_utr;Parent=Msa0734540-mRNA-1
Gene Sequence

>Msa0734540

ATGAAAGAGTTGAATGACGGAAAGCCAAGAAAGATTAAAAATGCTAGAGCATATTCATTCACTCTTGAAGAAGACACCACAAACTATGGTGCATATGAAAAAGGTGGTATTGTCACACAGGCCAAACAACCAAAGGTTTTGAACTTCAAACCTCTAAGGGAAGCACTCAATGATCCAGGCGAATTTCTTCTTAGCGATTTTTCTAAGTTTGATCGCCCACCTCTACTGCATCTAGCATTCCAGGCCCTGGATAAGTTCATTTCTGAGATAGGCCGCTTCCCCGTCGCTGGTTCAGAGGAAGATGCACATAAATTCATTTCTATCGCCAGTAATATTAATGGGAACTTAGGTGATGGAAGGTTGGAAGATGTGAATCCCAAGCTTCTACAGCAATTTGCCTTTGGTGCTAGGGCAGTATTGAACCCTATGGCTGCCATGTTTGGTGGAATTGTAGGACAAGAGGTTGTCAAAGCATGCTCTGGGAAATTTCATCCACTGTTTCAGTTTTTCTACTTCGACTCTGTGGAATCACTTCCGACAGAACCATTGCATCCTAATGATTTAAAACCAATAAATAGTCGTTACGATGCTCAGATTTCAGTTTTTGGGCAAAAGTTACAGAAGAAATTTGAAGATGCTAAAGTGTTTGTTGTTGGTTCTGGTGCACTGGGGTGTGAATTTTTAAAGAATCTTGCCTTAATGGGAGTTTCTTGTGGAGGTCAAGGGAAGCTTACAGTTACTGATGATGATGTCATAGAGAAGAGTAACTTAAGCAGGCAGTTCCTCTTCCGTGATTGGAATATTGGCCAGGCGAAGTCCACAGTTGCTGCAACAGCTGCTGCATCTATAAACCCTCAACTGAATATTGAAGCTCTGCAAAACCGTGTTAGCTCTGAAACTGAAAATGTGTTTCATGATACCTTTTGGGAAAACTTGAGTGTTGTGATTAATGCACTAGATAATGTGAATGCAAGACTATACGTGGATCAGAGATGCCTGTATTTCCAGAAACCACTTCTTGAATCTGGAACTCTTGGAGCTAAATGCAATACCCAGATGGTCATTCCCCACCTAACAGAAAACTATGGTGCCTCAAGAGATCCACCTGAGAAACAAGCACCGATGTGTACCGTGCATTCATTTCCACACAACATTGACCACTGCTTGACTTGGGCTCGATCTGAGTTTGAGGGTTTGCTTGAGAAAACTCCAGCTGAAGTAAATGCATACTTATCCAACCCAAGTGAATATACTAATGCAATGAAGAACGCTGGTGATGCTCAGGCACGGGATAATTTGGAGCGCGTTCTTGAATGCTTGGACAAGGAGAAGTGTGAGGCTTTTGAAGATTGTATTACCTGGGCCAGACTTAAGTTTGAAGATTATTTTGCTAACCGAGTGAAGCAGTTAGCTTATACTTTTCCTGAGGATGCTGCAACTAGTACTGGAGCTCCATTTTGGTCTGCACCGAAACGGTTCCCTCGTCCACTGCAGTTCTCCTCCTCTGATCCAAGTCATCTCCAGTTTCTGATGGCAGCCTCTATACTACGCGCAGAAACATTTGGTATCCCTACCCCTGACTGGGTGAAAAACCCTATGAAGTTGGCAGAAGTTGTTGATAGAATGATAGTACCTGACTTTCAGCCAAAGAAGGATGCAAAAATAGTGACAGATGAGAAGGCAACCAGTCTCTCTACTGCTTCTGTGGATGATGCAGTTGTTATTGATGATCTAATTGTTAAGTTGGAGAGATTGCGGTCAAATCTGCAACCAGGCTTCAGGATGAAGCCAATCCAGTTTGAGAAGGATGATGATACAAACTACCATATGGACGTGATAGCTGGGCTTGCCAACATGAGAGCACGCAATTACAGCATTCCTGAAGTTGACAAGCTGAAGGCCAAGTTTATTGCTGGGCGGATCATTCCAGCGATTGCAACCTCAACTGCTATGGCCACTGGCCTTGTCTGTCTGGAGTTGTACAAAGCTTTGGATGGAGGGCACAAACTTGAGGACTACCGAAACACCTTTGCCAACTTAGCACTGCCTCTCTTTTCCATGGCTGAGCCAGTTCCGGCAAAGGTCATCAAGCATCAAGATTTGAGTTGGACTGTTTGGGACAGATGGATTATAAAAGACAATCCTACTCTCAGGGAGCTTCTTGATTGGCTGAAGGAAAAAGGTTTGAATGCTTATAGTATTTCTTGTGGAAGTTGCCTGCTTTTCAATAGCATGTTTCCTAGGCACAAAGAGCGGATGGACAAAAAAGTTGTAGATTTAGCAAGGGATATTGCCAAGATGGAAATCCCTTCATACCGTCGTCACATAGATGTTGTTGTGGCTTGTGAGGATGACGATGATAATGACATTGATATCCCTCAAGTATCCATTTATTTCCGTTGA
Protein sequence

>Msa0734540

MKELNDGKPRKIKNARAYSFTLEEDTTNYGAYEKGGIVTQAKQPKVLNFKPLREALNDPGEFLLSDFSKFDRPPLLHLAFQALDKFISEIGRFPVAGSEEDAHKFISIASNINGNLGDGRLEDVNPKLLQQFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLFQFFYFDSVESLPTEPLHPNDLKPINSRYDAQISVFGQKLQKKFEDAKVFVVGSGALGCEFLKNLALMGVSCGGQGKLTVTDDDVIEKSNLSRQFLFRDWNIGQAKSTVAATAAASINPQLNIEALQNRVSSETENVFHDTFWENLSVVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPSEYTNAMKNAGDAQARDNLERVLECLDKEKCEAFEDCITWARLKFEDYFANRVKQLAYTFPEDAATSTGAPFWSAPKRFPRPLQFSSSDPSHLQFLMAASILRAETFGIPTPDWVKNPMKLAEVVDRMIVPDFQPKKDAKIVTDEKATSLSTASVDDAVVIDDLIVKLERLRSNLQPGFRMKPIQFEKDDDTNYHMDVIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKALDGGHKLEDYRNTFANLALPLFSMAEPVPAKVIKHQDLSWTVWDRWIIKDNPTLRELLDWLKEKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLARDIAKMEIPSYRRHIDVVVACEDDDDNDIDIPQVSIYFR*