Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071280 | KEH27386.1 | 86.631 | 187 | 23 | 2 | 1 | 186 | 67 | 252 | 7.01e-110 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071280 | sp|Q8S8T8|PCR10_ARATH | 55.615 | 187 | 76 | 4 | 2 | 182 | 3 | 188 | 1.75e-66 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071280 | A0A072UD93 | 86.631 | 187 | 23 | 2 | 1 | 186 | 67 | 252 | 3.35e-110 | 324 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101060 | Msa1071280 | 0.806645 | 7.440406e-50 | -8.615850e-47 |
| Msa0794420 | Msa1071280 | 0.804217 | 2.401521e-49 | -8.615850e-47 |
| Msa0292180 | Msa1071280 | 0.806549 | 7.795962e-50 | -8.615850e-47 |
| Msa0908170 | Msa1071280 | 0.801807 | 7.565519e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071280 | MtrunA17_Chr5g0395991 | 83.088 | 136 | 21 | 2 | 52 | 186 | 1 | 135 | 1.25e-74 | 220 |
| Msa1071280 | MtrunA17_Chr5g0395981 | 89.474 | 57 | 6 | 0 | 1 | 57 | 43 | 99 | 2.56e-32 | 112 |
| Msa1071280 | MtrunA17_Chr8g0391441 | 33.333 | 132 | 73 | 4 | 32 | 163 | 25 | 141 | 1.09e-13 | 65.9 |
| Msa1071280 | MtrunA17_Chr3g0079081 | 31.847 | 157 | 89 | 6 | 41 | 182 | 59 | 212 | 8.21e-13 | 64.7 |
| Msa1071280 | MtrunA17_Chr4g0045011 | 31.210 | 157 | 78 | 9 | 33 | 177 | 53 | 191 | 1.10e-11 | 60.8 |
| Msa1071280 | MtrunA17_Chr4g0021021 | 27.976 | 168 | 92 | 6 | 41 | 186 | 31 | 191 | 1.69e-11 | 60.5 |
| Msa1071280 | MtrunA17_Chr8g0391401 | 30.667 | 150 | 85 | 5 | 36 | 182 | 4 | 137 | 3.96e-11 | 58.5 |
| Msa1071280 | MtrunA17_Chr4g0045001 | 31.852 | 135 | 67 | 7 | 32 | 161 | 42 | 156 | 4.04e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071280 | AT2G40935.8 | 55.615 | 187 | 76 | 4 | 2 | 182 | 3 | 188 | 1.78e-67 | 204 |
| Msa1071280 | AT2G40935.9 | 55.615 | 187 | 76 | 4 | 2 | 182 | 3 | 188 | 1.78e-67 | 204 |
| Msa1071280 | AT2G40935.1 | 55.615 | 187 | 76 | 4 | 2 | 182 | 3 | 188 | 1.78e-67 | 204 |
| Msa1071280 | AT2G40935.6 | 55.615 | 187 | 76 | 4 | 2 | 182 | 3 | 188 | 1.78e-67 | 204 |
| Msa1071280 | AT2G40935.5 | 55.615 | 187 | 76 | 4 | 2 | 182 | 3 | 188 | 1.78e-67 | 204 |
| Msa1071280 | AT2G40935.3 | 49.733 | 187 | 76 | 5 | 2 | 182 | 3 | 177 | 9.05e-55 | 172 |
| Msa1071280 | AT2G40935.2 | 57.031 | 128 | 53 | 2 | 56 | 182 | 38 | 164 | 1.79e-44 | 145 |
| Msa1071280 | AT2G40935.7 | 57.031 | 128 | 53 | 2 | 56 | 182 | 38 | 164 | 1.79e-44 | 145 |
| Msa1071280 | AT2G40935.4 | 57.031 | 128 | 53 | 2 | 56 | 182 | 38 | 164 | 1.79e-44 | 145 |
| Msa1071280 | AT5G35525.1 | 31.250 | 160 | 81 | 6 | 29 | 177 | 4 | 145 | 2.14e-12 | 62.4 |
| Msa1071280 | AT1G14870.1 | 29.518 | 166 | 85 | 7 | 23 | 177 | 1 | 145 | 7.83e-12 | 60.8 |
| Msa1071280 | AT1G14870.2 | 30.000 | 150 | 81 | 6 | 23 | 169 | 1 | 129 | 2.26e-11 | 59.3 |
Find 55 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAAGAATGCAGAATTTC+TGG | 0.136909 | 7_2:+67745091 | Msa1071280:CDS |
| ACAATTTCGTTGATTGAAAT+TGG | 0.137293 | 7_2:-67743630 | None:intergenic |
| CTTTGTCCTTGCTACCTCTT+TGG | 0.163797 | 7_2:+67745071 | Msa1071280:CDS |
| CAAGACTCCACAATATAAAA+TGG | 0.183305 | 7_2:-67745145 | None:intergenic |
| TTATCGAAACATTATGAAAA+AGG | 0.220573 | 7_2:-67743672 | None:intergenic |
| GGATCAAATCAATGGTCTTC+TGG | 0.256294 | 7_2:+67744006 | Msa1071280:CDS |
| ACCTTGGTTCTTCATAATAA+TGG | 0.263710 | 7_2:-67743890 | None:intergenic |
| CTGGGTTCTGGCACGTTCAT+GGG | 0.276161 | 7_2:+67745110 | Msa1071280:CDS |
| CAAATTATACTTTGATCTTA+AGG | 0.284771 | 7_2:-67745258 | None:intergenic |
| GAAACCCGTAAATCAGAAAA+TGG | 0.321254 | 7_2:-67743698 | None:intergenic |
| AATGCAGAATTTCTGGGTTC+TGG | 0.323080 | 7_2:+67745098 | Msa1071280:CDS |
| TTTGTCCTTGCTACCTCTTT+GGG | 0.333564 | 7_2:+67745072 | Msa1071280:CDS |
| AATTAAATTGTTTATAATGT+TGG | 0.351901 | 7_2:-67743736 | None:intergenic |
| GGCTTCTGTGCAGGTTGTAT+AGG | 0.363558 | 7_2:+67745044 | Msa1071280:intron |
| CAGCTCTTTCGCGTATTTCA+CGG | 0.371837 | 7_2:-67746228 | None:intergenic |
| AAGATCAAAGTATAATTTGC+CGG | 0.391461 | 7_2:+67745262 | Msa1071280:CDS |
| TGGAATCTGACTGCATTGTC+TGG | 0.399372 | 7_2:-67746303 | None:intergenic |
| GGGAAGAATGCAGAATTTCT+GGG | 0.403517 | 7_2:+67745092 | Msa1071280:CDS |
| GTGAAATACGCGAAAGAGCT+GGG | 0.429175 | 7_2:+67746230 | Msa1071280:CDS |
| TCCACCTGCTTACATCCCAT+TGG | 0.441939 | 7_2:+67743921 | Msa1071280:CDS |
| CCACCTGCTTACATCCCATT+GGG | 0.443393 | 7_2:+67743922 | Msa1071280:CDS |
| TAAACAATTTAATTTCTCCT+TGG | 0.445477 | 7_2:+67743745 | Msa1071280:five_prime_UTR |
| CGTGAAATACGCGAAAGAGC+TGG | 0.454935 | 7_2:+67746229 | Msa1071280:CDS |
| AGGGTTGTGGCATTACTGAT+TGG | 0.487313 | 7_2:-67746323 | None:intergenic |
| AAGACTCCACAATATAAAAT+GGG | 0.490249 | 7_2:-67745144 | None:intergenic |
| AGGTAAGTTCACAGACTTTG+AGG | 0.504528 | 7_2:+67745886 | Msa1071280:CDS |
| ATTTCTCTTGAAAACACTCC+AGG | 0.515163 | 7_2:+67745917 | Msa1071280:CDS |
| GGTAAGTTCACAGACTTTGA+GGG | 0.515533 | 7_2:+67745887 | Msa1071280:CDS |
| GACTGCATTGTCTGGACAGG+TGG | 0.519769 | 7_2:-67746295 | None:intergenic |
| TCTGAATCTGATTGACCCAA+TGG | 0.522303 | 7_2:-67743937 | None:intergenic |
| TCTGACTGCATTGTCTGGAC+AGG | 0.526290 | 7_2:-67746298 | None:intergenic |
| ATTCTGCATTCTTCCCAAAG+AGG | 0.532916 | 7_2:-67745085 | None:intergenic |
| AAAAGGATGGATAAATAGAA+AGG | 0.534435 | 7_2:-67743655 | None:intergenic |
| GTAGCAATGGATCAAATCAA+TGG | 0.534849 | 7_2:+67743998 | Msa1071280:CDS |
| GCCTGCTGCTTATTAACCGA+TGG | 0.548925 | 7_2:+67745176 | Msa1071280:CDS |
| CACAAGCATAACACGAAACA+AGG | 0.556012 | 7_2:-67745223 | None:intergenic |
| TGAAGCTACAGATATGAAGC+TGG | 0.570972 | 7_2:+67746258 | Msa1071280:CDS |
| GCCATCGGTTAATAAGCAGC+AGG | 0.572611 | 7_2:-67745177 | None:intergenic |
| TGACCCAATGGGATGTAAGC+AGG | 0.573937 | 7_2:-67743925 | None:intergenic |
| TTCTTCCCAAAGAGGTAGCA+AGG | 0.573956 | 7_2:-67745077 | None:intergenic |
| TGGGTTCTGGCACGTTCATG+GGG | 0.574682 | 7_2:+67745111 | Msa1071280:CDS |
| CTACTACCACCATGGTGTAG+AGG | 0.574859 | 7_2:-67743976 | None:intergenic |
| TAACACGAAACAAGGCATCC+AGG | 0.577372 | 7_2:-67745215 | None:intergenic |
| CTTGTTTCGTGTTATGCTTG+TGG | 0.581137 | 7_2:+67745224 | Msa1071280:CDS |
| CATGGTGGTAGTAGTAGCAA+TGG | 0.585897 | 7_2:+67743985 | Msa1071280:CDS |
| CTGAATCTGATTGACCCAAT+GGG | 0.585943 | 7_2:-67743936 | None:intergenic |
| TCCATTATTATGAAGAACCA+AGG | 0.591583 | 7_2:+67743889 | Msa1071280:exon |
| ACTTTGATCTTAAGGTATTG+CGG | 0.618835 | 7_2:-67745250 | None:intergenic |
| TGAAATACGCGAAAGAGCTG+GGG | 0.629440 | 7_2:+67746231 | Msa1071280:CDS |
| CCCAATGGGATGTAAGCAGG+TGG | 0.640544 | 7_2:-67743922 | None:intergenic |
| CAGGTGGAACATAACCACCT+TGG | 0.653627 | 7_2:-67743906 | None:intergenic |
| CATTGCTACTACTACCACCA+TGG | 0.661910 | 7_2:-67743984 | None:intergenic |
| GTCTCTCCTCTACACCATGG+TGG | 0.678731 | 7_2:+67743970 | Msa1071280:CDS |
| ATTATTATGAAGAACCAAGG+TGG | 0.688442 | 7_2:+67743892 | Msa1071280:exon |
| AGTGTCTCTCCTCTACACCA+TGG | 0.703188 | 7_2:+67743967 | Msa1071280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATTGTTTATAATGT+TGG | - | chr7_2:67743739-67743758 | None:intergenic | 10.0% |
| !!! | TTTTATTCTTTTTAGATTTA+TGG | + | chr7_2:67743785-67743804 | Msa1071280:five_prime_UTR | 10.0% |
| !!! | TTTATTCTTTTTAGATTTAT+GGG | + | chr7_2:67743786-67743805 | Msa1071280:five_prime_UTR | 10.0% |
| !!! | GCAATTAATTTATTAATTTT+TGG | + | chr7_2:67743846-67743865 | Msa1071280:five_prime_UTR | 10.0% |
| !! | TTATTTGATGTATATATAAA+GGG | + | chr7_2:67744726-67744745 | Msa1071280:intron | 10.0% |
| !!! | ATGCATTTTTTTTATAAAAA+AGG | + | chr7_2:67745993-67746012 | Msa1071280:intron | 10.0% |
| !! | GTTATTTGATGTATATATAA+AGG | + | chr7_2:67744725-67744744 | Msa1071280:intron | 15.0% |
| !! | AAAAATCATTTGACTAATTA+CGG | - | chr7_2:67744887-67744906 | None:intergenic | 15.0% |
| !! | AGTAAATTTGAAGAATAATT+AGG | + | chr7_2:67745489-67745508 | Msa1071280:intron | 15.0% |
| !! | TTAATAATGAAAAGAAAATC+TGG | + | chr7_2:67746095-67746114 | Msa1071280:intron | 15.0% |
| !! | TTATCGAAACATTATGAAAA+AGG | - | chr7_2:67743675-67743694 | None:intergenic | 20.0% |
| !!! | AAATTCCATTTTCTGATTTA+CGG | + | chr7_2:67743693-67743712 | Msa1071280:five_prime_UTR | 20.0% |
| !!! | TAAACAATTTAATTTCTCCT+TGG | + | chr7_2:67743745-67743764 | Msa1071280:five_prime_UTR | 20.0% |
| !! | TTTGTATGTTTGTTTGTTTA+AGG | + | chr7_2:67744114-67744133 | Msa1071280:intron | 20.0% |
| !!! | AAGTTCTGAATTTTATTGTT+TGG | + | chr7_2:67744561-67744580 | Msa1071280:intron | 20.0% |
| !!! | AAAGATTGGTTTCAAATTTT+CGG | + | chr7_2:67745023-67745042 | Msa1071280:intron | 20.0% |
| !! | CAAATTATACTTTGATCTTA+AGG | - | chr7_2:67745261-67745280 | None:intergenic | 20.0% |
| !! | ATAAAATTTGATGTAAAGCA+TGG | - | chr7_2:67745302-67745321 | None:intergenic | 20.0% |
| !! | TAATAGTAAAAGAACTGTTT+AGG | + | chr7_2:67745519-67745538 | Msa1071280:intron | 20.0% |
| !! | ATGTGATAAAAATGAAAGAA+AGG | + | chr7_2:67745667-67745686 | Msa1071280:intron | 20.0% |
| !! | AGAAATTGAAATAAACTTGT+AGG | + | chr7_2:67745812-67745831 | Msa1071280:intron | 20.0% |
| !! | TGCTAAAATTTCTCTATTAA+AGG | - | chr7_2:67746024-67746043 | None:intergenic | 20.0% |
| !! | ACATCCAAAAAATTTAGATT+GGG | - | chr7_2:67746061-67746080 | None:intergenic | 20.0% |
| !!! | ATATTCTTTTTGTCTTATGA+AGG | + | chr7_2:67746141-67746160 | Msa1071280:intron | 20.0% |
| !! | ACAATTTCGTTGATTGAAAT+TGG | - | chr7_2:67743633-67743652 | None:intergenic | 25.0% |
| ! | AAAAGGATGGATAAATAGAA+AGG | - | chr7_2:67743658-67743677 | None:intergenic | 25.0% |
| !! | AATTCCATTTTCTGATTTAC+GGG | + | chr7_2:67743694-67743713 | Msa1071280:five_prime_UTR | 25.0% |
| ! | ATACAAACATAATCAACAAG+AGG | - | chr7_2:67744101-67744120 | None:intergenic | 25.0% |
| ! | CTAAGAAAAATCTTCTACTA+AGG | - | chr7_2:67744280-67744299 | None:intergenic | 25.0% |
| ! | CATCCTAAAAATAGTATTCT+CGG | - | chr7_2:67744442-67744461 | None:intergenic | 25.0% |
| ! | TGTTTAACAAACACAAGAAA+AGG | - | chr7_2:67744610-67744629 | None:intergenic | 25.0% |
| ! | TAACTCACTGAACTTATTTA+TGG | + | chr7_2:67744651-67744670 | Msa1071280:intron | 25.0% |
| !! | ACTTTTTGTAACATACAGAA+AGG | - | chr7_2:67744969-67744988 | None:intergenic | 25.0% |
| ! | AAGACTCCACAATATAAAAT+GGG | - | chr7_2:67745147-67745166 | None:intergenic | 25.0% |
| !! | AAGATCAAAGTATAATTTGC+CGG | + | chr7_2:67745262-67745281 | Msa1071280:CDS | 25.0% |
| ! | CATGGTTGTAATATTATTAC+CGG | - | chr7_2:67745284-67745303 | None:intergenic | 25.0% |
| ! | GAACAGAAAATAGAAAGAAA+AGG | - | chr7_2:67745339-67745358 | None:intergenic | 25.0% |
| !! | TTTCTTTCTATTTTCTGTTC+TGG | + | chr7_2:67745339-67745358 | Msa1071280:intron | 25.0% |
| ! | AATTGGGGTAAAATAGTAAA+TGG | + | chr7_2:67745442-67745461 | Msa1071280:intron | 25.0% |
| ! | AATAGTAAATGGTTCTTAAC+TGG | + | chr7_2:67745453-67745472 | Msa1071280:intron | 25.0% |
| ! | TATTCTTCAAATTTACTGAC+TGG | - | chr7_2:67745486-67745505 | None:intergenic | 25.0% |
| ! | ATACTCTCTTATGTAGAAAT+TGG | - | chr7_2:67745717-67745736 | None:intergenic | 25.0% |
| !!! | CAATTTCTAGTTTTCTTCTA+GGG | - | chr7_2:67745800-67745819 | None:intergenic | 25.0% |
| !!! | TCAATTTCTAGTTTTCTTCT+AGG | - | chr7_2:67745801-67745820 | None:intergenic | 25.0% |
| !!! | ATCACCCAATCTAAATTTTT+TGG | + | chr7_2:67746054-67746073 | Msa1071280:intron | 25.0% |
| ! | GACATCCAAAAAATTTAGAT+TGG | - | chr7_2:67746062-67746081 | None:intergenic | 25.0% |
| CGAAACATTATGAAAAAGGA+TGG | - | chr7_2:67743671-67743690 | None:intergenic | 30.0% | |
| ! | AATGAATTTTTGTGAGACCA+AGG | - | chr7_2:67743765-67743784 | None:intergenic | 30.0% |
| TCCATTATTATGAAGAACCA+AGG | + | chr7_2:67743889-67743908 | Msa1071280:exon | 30.0% | |
| ! | ACCTTGGTTCTTCATAATAA+TGG | - | chr7_2:67743893-67743912 | None:intergenic | 30.0% |
| ATTATTATGAAGAACCAAGG+TGG | + | chr7_2:67743892-67743911 | Msa1071280:exon | 30.0% | |
| AGATTGATTGATAAGCTCAT+TGG | + | chr7_2:67744341-67744360 | Msa1071280:intron | 30.0% | |
| !!! | CGAGAATACTATTTTTAGGA+TGG | + | chr7_2:67744440-67744459 | Msa1071280:intron | 30.0% |
| TCACTGAACTTATTTATGGT+TGG | + | chr7_2:67744655-67744674 | Msa1071280:intron | 30.0% | |
| ATAACCACTGATGTGAAATA+GGG | - | chr7_2:67744710-67744729 | None:intergenic | 30.0% | |
| AATAACCACTGATGTGAAAT+AGG | - | chr7_2:67744711-67744730 | None:intergenic | 30.0% | |
| TGATGTATATATAAAGGGCA+TGG | + | chr7_2:67744731-67744750 | Msa1071280:intron | 30.0% | |
| CACAATGCATAATATATGCA+AGG | + | chr7_2:67744786-67744805 | Msa1071280:intron | 30.0% | |
| CATAATATATGCAAGGTCTA+GGG | + | chr7_2:67744793-67744812 | Msa1071280:intron | 30.0% | |
| !!! | TCTGCTTTTTTTCGATAAAC+TGG | + | chr7_2:67744993-67745012 | Msa1071280:intron | 30.0% |
| AAACTGGCAAATGAAAAGAT+TGG | + | chr7_2:67745009-67745028 | Msa1071280:intron | 30.0% | |
| ! | GTGTTACCCATTTTATATTG+TGG | + | chr7_2:67745138-67745157 | Msa1071280:CDS | 30.0% |
| CAAGACTCCACAATATAAAA+TGG | - | chr7_2:67745148-67745167 | None:intergenic | 30.0% | |
| !! | ACTTTGATCTTAAGGTATTG+CGG | - | chr7_2:67745253-67745272 | None:intergenic | 30.0% |
| ! | TGAGACTGGTTAATGTAATT+GGG | + | chr7_2:67745426-67745445 | Msa1071280:intron | 30.0% |
| AACTGTTTAGGTATGTTAGT+AGG | + | chr7_2:67745531-67745550 | Msa1071280:intron | 30.0% | |
| ACTGTTTAGGTATGTTAGTA+GGG | + | chr7_2:67745532-67745551 | Msa1071280:intron | 30.0% | |
| AGTATCTATGTCATCTGATA+GGG | + | chr7_2:67745732-67745751 | Msa1071280:intron | 30.0% | |
| ! | CAGAATTTCTGAATCCTTTT+AGG | + | chr7_2:67745856-67745875 | Msa1071280:intron | 30.0% |
| CTAGGAAAATATTTAGGCAT+AGG | - | chr7_2:67745967-67745986 | None:intergenic | 30.0% | |
| CTGCAACTAGGAAAATATTT+AGG | - | chr7_2:67745973-67745992 | None:intergenic | 30.0% | |
| AAAAAAATGCATCTGCAACT+AGG | - | chr7_2:67745985-67746004 | None:intergenic | 30.0% | |
| ACACAGATGACAACAAAAAT+GGG | - | chr7_2:67746191-67746210 | None:intergenic | 30.0% | |
| GAAACCCGTAAATCAGAAAA+TGG | - | chr7_2:67743701-67743720 | None:intergenic | 35.0% | |
| GTAGCAATGGATCAAATCAA+TGG | + | chr7_2:67743998-67744017 | Msa1071280:CDS | 35.0% | |
| ! | CTTGGTGATTAAACAAGGTA+AGG | - | chr7_2:67744075-67744094 | None:intergenic | 35.0% |
| ! | CTTACCTTGTTTAATCACCA+AGG | + | chr7_2:67744073-67744092 | Msa1071280:intron | 35.0% |
| ACGAATGTAGGAGAAAAATG+AGG | + | chr7_2:67744235-67744254 | Msa1071280:intron | 35.0% | |
| CGAATGTAGGAGAAAAATGA+GGG | + | chr7_2:67744236-67744255 | Msa1071280:intron | 35.0% | |
| GAATGTAGGAGAAAAATGAG+GGG | + | chr7_2:67744237-67744256 | Msa1071280:intron | 35.0% | |
| TGATTGATAAGCTCATTGGT+TGG | + | chr7_2:67744345-67744364 | Msa1071280:intron | 35.0% | |
| CAGTACATGTTCCTTATTGT+GGG | - | chr7_2:67744411-67744430 | None:intergenic | 35.0% | |
| ACAGTACATGTTCCTTATTG+TGG | - | chr7_2:67744412-67744431 | None:intergenic | 35.0% | |
| CCTAAAAATAGTATTCTCGG+CGG | - | chr7_2:67744439-67744458 | None:intergenic | 35.0% | |
| !!! | ATTTTTAGGATGGATGACAC+TGG | + | chr7_2:67744450-67744469 | Msa1071280:intron | 35.0% |
| AAAAGATCTCACTGATCAGT+GGG | - | chr7_2:67744491-67744510 | None:intergenic | 35.0% | |
| TAAAAGATCTCACTGATCAG+TGG | - | chr7_2:67744492-67744511 | None:intergenic | 35.0% | |
| !! | TTTTGACTGCCTTGACAATA+AGG | + | chr7_2:67744527-67744546 | Msa1071280:intron | 35.0% |
| CTTGACAATAAGGATTAGGA+GGG | + | chr7_2:67744537-67744556 | Msa1071280:intron | 35.0% | |
| TTGACAATAAGGATTAGGAG+GGG | + | chr7_2:67744538-67744557 | Msa1071280:intron | 35.0% | |
| TAACCACTGATGTGAAATAG+GGG | - | chr7_2:67744709-67744728 | None:intergenic | 35.0% | |
| GCATAATATATGCAAGGTCT+AGG | + | chr7_2:67744792-67744811 | Msa1071280:intron | 35.0% | |
| !!! | CTCCATGCCCTTTTTTTTTT+GGG | - | chr7_2:67744837-67744856 | None:intergenic | 35.0% |
| !!! | ACTCCATGCCCTTTTTTTTT+TGG | - | chr7_2:67744838-67744857 | None:intergenic | 35.0% |
| ! | GTGAGACTGGTTAATGTAAT+TGG | + | chr7_2:67745425-67745444 | Msa1071280:intron | 35.0% |
| ! | GAGACTGGTTAATGTAATTG+GGG | + | chr7_2:67745427-67745446 | Msa1071280:intron | 35.0% |
| AGTAAATGGTTCTTAACTGG+AGG | + | chr7_2:67745456-67745475 | Msa1071280:intron | 35.0% | |
| TCTATAGGAAGTGAAAAGCT+GGG | - | chr7_2:67745573-67745592 | None:intergenic | 35.0% | |
| GAGTATCTATGTCATCTGAT+AGG | + | chr7_2:67745731-67745750 | Msa1071280:intron | 35.0% | |
| ! | GTTAGATAATGCAGGTTGAA+GGG | + | chr7_2:67745754-67745773 | Msa1071280:intron | 35.0% |
| !! | AGTTTTCTTCTAGGGAAAAC+TGG | - | chr7_2:67745792-67745811 | None:intergenic | 35.0% |
| !! | GAATCCTTTTAGGTAGTTCA+AGG | + | chr7_2:67745866-67745885 | Msa1071280:intron | 35.0% |
| CTTACCTTGAACTACCTAAA+AGG | - | chr7_2:67745873-67745892 | None:intergenic | 35.0% | |
| ATTTCTCTTGAAAACACTCC+AGG | + | chr7_2:67745917-67745936 | Msa1071280:CDS | 35.0% | |
| CACACAGATGACAACAAAAA+TGG | - | chr7_2:67746192-67746211 | None:intergenic | 35.0% | |
| CTGAATCTGATTGACCCAAT+GGG | - | chr7_2:67743939-67743958 | None:intergenic | 40.0% | |
| TCTGAATCTGATTGACCCAA+TGG | - | chr7_2:67743940-67743959 | None:intergenic | 40.0% | |
| GGATCAAATCAATGGTCTTC+TGG | + | chr7_2:67744006-67744025 | Msa1071280:CDS | 40.0% | |
| !! | ATAATCAACAAGAGGCACCT+TGG | - | chr7_2:67744093-67744112 | None:intergenic | 40.0% |
| AGAAAAATGAGGGGAACTAG+AGG | + | chr7_2:67744246-67744265 | Msa1071280:intron | 40.0% | |
| ! | TGATAAGCTCATTGGTTGGT+TGG | + | chr7_2:67744349-67744368 | Msa1071280:intron | 40.0% |
| GTTGGAACCTTATGTTGGAT+GGG | + | chr7_2:67744367-67744386 | Msa1071280:intron | 40.0% | |
| TGTTCCTTATTGTGGGTCTA+TGG | - | chr7_2:67744404-67744423 | None:intergenic | 40.0% | |
| !! | CCGCCGAGAATACTATTTTT+AGG | + | chr7_2:67744436-67744455 | Msa1071280:intron | 40.0% |
| ! | CAGTGAGATCTTTTACGAGT+AGG | + | chr7_2:67744497-67744516 | Msa1071280:intron | 40.0% |
| CTGCCTTGACAATAAGGATT+AGG | + | chr7_2:67744533-67744552 | Msa1071280:intron | 40.0% | |
| CCTCCTAATCCTTATTGTCA+AGG | - | chr7_2:67744539-67744558 | None:intergenic | 40.0% | |
| CCTTGACAATAAGGATTAGG+AGG | + | chr7_2:67744536-67744555 | Msa1071280:intron | 40.0% | |
| AACCACTGATGTGAAATAGG+GGG | - | chr7_2:67744708-67744727 | None:intergenic | 40.0% | |
| GCCACCACCCAAAAAAAAAA+GGG | + | chr7_2:67744827-67744846 | Msa1071280:intron | 40.0% | |
| !!! | CATGCCCTTTTTTTTTTGGG+TGG | - | chr7_2:67744834-67744853 | None:intergenic | 40.0% |
| CACCCAAAAAAAAAAGGGCA+TGG | + | chr7_2:67744832-67744851 | Msa1071280:intron | 40.0% | |
| TTTGTCCTTGCTACCTCTTT+GGG | + | chr7_2:67745072-67745091 | Msa1071280:CDS | 40.0% | |
| ATTCTGCATTCTTCCCAAAG+AGG | - | chr7_2:67745088-67745107 | None:intergenic | 40.0% | |
| TGGGAAGAATGCAGAATTTC+TGG | + | chr7_2:67745091-67745110 | Msa1071280:CDS | 40.0% | |
| GGGAAGAATGCAGAATTTCT+GGG | + | chr7_2:67745092-67745111 | Msa1071280:CDS | 40.0% | |
| ! | AATGCAGAATTTCTGGGTTC+TGG | + | chr7_2:67745098-67745117 | Msa1071280:CDS | 40.0% |
| ! | ATTAACCGATGGCCTGTTTT+TGG | + | chr7_2:67745187-67745206 | Msa1071280:CDS | 40.0% |
| !! | TTAACCGATGGCCTGTTTTT+GGG | + | chr7_2:67745188-67745207 | Msa1071280:CDS | 40.0% |
| TAAACCCAAAAACAGGCCAT+CGG | - | chr7_2:67745195-67745214 | None:intergenic | 40.0% | |
| ATCCAGGTAAACCCAAAAAC+AGG | - | chr7_2:67745202-67745221 | None:intergenic | 40.0% | |
| CACAAGCATAACACGAAACA+AGG | - | chr7_2:67745226-67745245 | None:intergenic | 40.0% | |
| CTTGTTTCGTGTTATGCTTG+TGG | + | chr7_2:67745224-67745243 | Msa1071280:CDS | 40.0% | |
| !! | TGTTGCATTTTGAGTGAGAC+TGG | + | chr7_2:67745412-67745431 | Msa1071280:intron | 40.0% |
| CTATAGGAAGTGAAAAGCTG+GGG | - | chr7_2:67745572-67745591 | None:intergenic | 40.0% | |
| GTCTATAGGAAGTGAAAAGC+TGG | - | chr7_2:67745574-67745593 | None:intergenic | 40.0% | |
| CTGATAGGGTTAGATAATGC+AGG | + | chr7_2:67745746-67745765 | Msa1071280:intron | 40.0% | |
| ! | GGTTAGATAATGCAGGTTGA+AGG | + | chr7_2:67745753-67745772 | Msa1071280:intron | 40.0% |
| AGGTAAGTTCACAGACTTTG+AGG | + | chr7_2:67745886-67745905 | Msa1071280:CDS | 40.0% | |
| GGTAAGTTCACAGACTTTGA+GGG | + | chr7_2:67745887-67745906 | Msa1071280:CDS | 40.0% | |
| TTCACGGTACTCTTGACAAA+TGG | - | chr7_2:67746215-67746234 | None:intergenic | 40.0% | |
| TGAAGCTACAGATATGAAGC+TGG | + | chr7_2:67746258-67746277 | Msa1071280:CDS | 40.0% | |
| CATTGCTACTACTACCACCA+TGG | - | chr7_2:67743987-67744006 | None:intergenic | 45.0% | |
| CATGGTGGTAGTAGTAGCAA+TGG | + | chr7_2:67743985-67744004 | Msa1071280:CDS | 45.0% | |
| ! | GGCACCTTGGTGATTAAACA+AGG | - | chr7_2:67744080-67744099 | None:intergenic | 45.0% |
| GTGCTAGATGACACGAATGT+AGG | + | chr7_2:67744223-67744242 | Msa1071280:intron | 45.0% | |
| ! | GGTTGGTTGGAACCTTATGT+TGG | + | chr7_2:67744362-67744381 | Msa1071280:intron | 45.0% |
| GGTTGGAACCTTATGTTGGA+TGG | + | chr7_2:67744366-67744385 | Msa1071280:intron | 45.0% | |
| CTTATGTTGGATGGGAAGAC+CGG | + | chr7_2:67744375-67744394 | Msa1071280:intron | 45.0% | |
| TATTGTGGGTCTATGGTAGC+CGG | - | chr7_2:67744397-67744416 | None:intergenic | 45.0% | |
| GCTACCATAGACCCACAATA+AGG | + | chr7_2:67744397-67744416 | Msa1071280:intron | 45.0% | |
| ATCTCACTGATCAGTGGGAT+AGG | - | chr7_2:67744486-67744505 | None:intergenic | 45.0% | |
| TTCCCCCTATTTCACATCAG+TGG | + | chr7_2:67744703-67744722 | Msa1071280:intron | 45.0% | |
| !!! | TTTTTTTTGGGTGGTGGCCA+GGG | - | chr7_2:67744825-67744844 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTGGGTGGTGGCC+AGG | - | chr7_2:67744826-67744845 | None:intergenic | 45.0% |
| GGCCACCACCCAAAAAAAAA+AGG | + | chr7_2:67744826-67744845 | Msa1071280:intron | 45.0% | |
| !!! | GCCCTTTTTTTTTTGGGTGG+TGG | - | chr7_2:67744831-67744850 | None:intergenic | 45.0% |
| ! | CAAATTTTCGGCTTCTGTGC+AGG | + | chr7_2:67745035-67745054 | Msa1071280:intron | 45.0% |
| CTTTGTCCTTGCTACCTCTT+TGG | + | chr7_2:67745071-67745090 | Msa1071280:CDS | 45.0% | |
| TTCTTCCCAAAGAGGTAGCA+AGG | - | chr7_2:67745080-67745099 | None:intergenic | 45.0% | |
| ! | TAACACGAAACAAGGCATCC+AGG | - | chr7_2:67745218-67745237 | None:intergenic | 45.0% |
| !! | TGCTGCTACTTGCTGTCTAT+AGG | - | chr7_2:67745588-67745607 | None:intergenic | 45.0% |
| ! | TGAAAACACTCCAGGTACTG+TGG | + | chr7_2:67745925-67745944 | Msa1071280:intron | 45.0% |
| !! | TTATGAAGGAAGCACCGTGT+GGG | + | chr7_2:67746155-67746174 | Msa1071280:intron | 45.0% |
| TGGGTTACAAAATCCCCACA+CGG | - | chr7_2:67746172-67746191 | None:intergenic | 45.0% | |
| CAGCTCTTTCGCGTATTTCA+CGG | - | chr7_2:67746231-67746250 | None:intergenic | 45.0% | |
| GTGAAATACGCGAAAGAGCT+GGG | + | chr7_2:67746230-67746249 | Msa1071280:CDS | 45.0% | |
| TGAAATACGCGAAAGAGCTG+GGG | + | chr7_2:67746231-67746250 | Msa1071280:CDS | 45.0% | |
| TGGAATCTGACTGCATTGTC+TGG | - | chr7_2:67746306-67746325 | None:intergenic | 45.0% | |
| CAGGTGGAACATAACCACCT+TGG | - | chr7_2:67743909-67743928 | None:intergenic | 50.0% | |
| TCCACCTGCTTACATCCCAT+TGG | + | chr7_2:67743921-67743940 | Msa1071280:CDS | 50.0% | |
| CCACCTGCTTACATCCCATT+GGG | + | chr7_2:67743922-67743941 | Msa1071280:CDS | 50.0% | |
| TGACCCAATGGGATGTAAGC+AGG | - | chr7_2:67743928-67743947 | None:intergenic | 50.0% | |
| AGTGTCTCTCCTCTACACCA+TGG | + | chr7_2:67743967-67743986 | Msa1071280:CDS | 50.0% | |
| CTACTACCACCATGGTGTAG+AGG | - | chr7_2:67743979-67743998 | None:intergenic | 50.0% | |
| CGGTCTTCCCATCCAACATA+AGG | - | chr7_2:67744377-67744396 | None:intergenic | 50.0% | |
| ! | AAGGTCTAGGGTTCAAACCC+TGG | + | chr7_2:67744805-67744824 | Msa1071280:intron | 50.0% |
| GGCTTCTGTGCAGGTTGTAT+AGG | + | chr7_2:67745044-67745063 | Msa1071280:intron | 50.0% | |
| ! | GCCTGCTGCTTATTAACCGA+TGG | + | chr7_2:67745176-67745195 | Msa1071280:CDS | 50.0% |
| ! | GCCATCGGTTAATAAGCAGC+AGG | - | chr7_2:67745180-67745199 | None:intergenic | 50.0% |
| !!! | GGCCTGTTTTTGGGTTTACC+TGG | + | chr7_2:67745197-67745216 | Msa1071280:CDS | 50.0% |
| GTAGCAGCAACTTTGAGTCC+TGG | + | chr7_2:67745599-67745618 | Msa1071280:intron | 50.0% | |
| CTCATCTCAGATGATGTGCC+AGG | - | chr7_2:67745620-67745639 | None:intergenic | 50.0% | |
| !! | GAGAAGTGTTCCACAGTACC+TGG | - | chr7_2:67745938-67745957 | None:intergenic | 50.0% |
| !! | CTTATGAAGGAAGCACCGTG+TGG | + | chr7_2:67746154-67746173 | Msa1071280:intron | 50.0% |
| !! | TATGAAGGAAGCACCGTGTG+GGG | + | chr7_2:67746156-67746175 | Msa1071280:intron | 50.0% |
| CGTGAAATACGCGAAAGAGC+TGG | + | chr7_2:67746229-67746248 | Msa1071280:CDS | 50.0% | |
| TCTGACTGCATTGTCTGGAC+AGG | - | chr7_2:67746301-67746320 | None:intergenic | 50.0% | |
| CCCAATGGGATGTAAGCAGG+TGG | - | chr7_2:67743925-67743944 | None:intergenic | 55.0% | |
| GTCTCTCCTCTACACCATGG+TGG | + | chr7_2:67743970-67743989 | Msa1071280:CDS | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr7_2:67744762-67744781 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr7_2:67744759-67744778 | Msa1071280:intron | 55.0% | |
| ! | TCTGGGTTCTGGCACGTTCA+TGG | + | chr7_2:67745109-67745128 | Msa1071280:CDS | 55.0% |
| ! | CTGGGTTCTGGCACGTTCAT+GGG | + | chr7_2:67745110-67745129 | Msa1071280:CDS | 55.0% |
| ! | TGGGTTCTGGCACGTTCATG+GGG | + | chr7_2:67745111-67745130 | Msa1071280:CDS | 55.0% |
| GACTGCATTGTCTGGACAGG+TGG | - | chr7_2:67746298-67746317 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 67743614 | 67746333 | 67743614 | ID=Msa1071280;Name=Msa1071280 |
| chr7_2 | mRNA | 67743614 | 67746333 | 67743614 | ID=Msa1071280-mRNA-1;Parent=Msa1071280;Name=Msa1071280-mRNA-1;_AED=0.32;_eAED=0.32;_QI=284|0.33|0.5|1|1|1|4|0|186 |
| chr7_2 | exon | 67743614 | 67744060 | 67743614 | ID=Msa1071280-mRNA-1:exon:14706;Parent=Msa1071280-mRNA-1 |
| chr7_2 | exon | 67745057 | 67745283 | 67745057 | ID=Msa1071280-mRNA-1:exon:14707;Parent=Msa1071280-mRNA-1 |
| chr7_2 | exon | 67745878 | 67745938 | 67745878 | ID=Msa1071280-mRNA-1:exon:14708;Parent=Msa1071280-mRNA-1 |
| chr7_2 | exon | 67746224 | 67746333 | 67746224 | ID=Msa1071280-mRNA-1:exon:14709;Parent=Msa1071280-mRNA-1 |
| chr7_2 | five_prime_UTR | 67743614 | 67743897 | 67743614 | ID=Msa1071280-mRNA-1:five_prime_utr;Parent=Msa1071280-mRNA-1 |
| chr7_2 | CDS | 67743898 | 67744060 | 67743898 | ID=Msa1071280-mRNA-1:cds;Parent=Msa1071280-mRNA-1 |
| chr7_2 | CDS | 67745057 | 67745283 | 67745057 | ID=Msa1071280-mRNA-1:cds;Parent=Msa1071280-mRNA-1 |
| chr7_2 | CDS | 67745878 | 67745938 | 67745878 | ID=Msa1071280-mRNA-1:cds;Parent=Msa1071280-mRNA-1 |
| chr7_2 | CDS | 67746224 | 67746333 | 67746224 | ID=Msa1071280-mRNA-1:cds;Parent=Msa1071280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
