AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1072060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072060 MtrunA17_Chr7g0254061 95.367 259 11 1 2 259 3 261 7.15e-171 492
Msa1072060 MtrunA17_Chr7g0254061 95.238 168 8 0 257 424 339 506 1.67e-104 322
Msa1072060 MtrunA17_Chr6g0460911 73.359 259 68 1 2 259 17 275 2.73e-132 394
Msa1072060 MtrunA17_Chr6g0460911 59.064 171 58 2 257 424 353 514 4.77e-53 187
Msa1072060 MtrunA17_Chr6g0460881 45.930 516 176 14 2 421 9 517 6.58e-131 390
Msa1072060 MtrunA17_Chr6g0460901 72.201 259 71 1 2 259 15 273 4.94e-129 385
Msa1072060 MtrunA17_Chr6g0460901 60.843 166 52 3 257 416 351 509 1.33e-51 183
Msa1072060 MtrunA17_Chr6g0460891 71.315 251 71 1 9 259 16 265 7.61e-123 372
Msa1072060 MtrunA17_Chr6g0460891 60.366 164 60 3 257 416 343 505 1.41e-52 187
Msa1072060 MtrunA17_Chr7g0254011 71.020 245 71 0 15 259 23 267 1.05e-116 354
Msa1072060 MtrunA17_Chr7g0254011 38.996 259 124 8 191 423 276 526 1.39e-45 167
Msa1072060 MtrunA17_Chr1g0160231 35.983 239 140 3 24 259 61 289 1.40e-36 141
Msa1072060 MtrunA17_Chr1g0160231 40.000 75 45 0 257 331 367 441 8.83e-11 63.9
Msa1072060 MtrunA17_Chr8g0381031 35.931 231 139 3 30 259 73 295 1.45e-35 138
Msa1072060 MtrunA17_Chr8g0381021 36.797 231 137 3 30 259 72 294 6.93e-35 136
Msa1072060 MtrunA17_Chr1g0210461 35.968 253 149 4 13 259 36 281 9.11e-35 135
Msa1072060 MtrunA17_Chr8g0381051 33.730 252 157 3 11 259 55 299 1.26e-33 132
Msa1072060 MtrunA17_Chr2g0296921 31.679 262 158 4 9 259 43 294 4.84e-33 130
Msa1072060 MtrunA17_Chr7g0215781 37.500 264 141 7 11 259 22 276 8.20e-33 130
Msa1072060 MtrunA17_Chr4g0055481 36.437 247 154 1 13 259 26 269 2.54e-28 117
Msa1072060 MtrunA17_Chr8g0358951 29.707 239 154 5 23 259 75 301 7.15e-23 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072060 AT1G58030.1 77.606 259 57 1 2 259 11 269 7.86e-137 406
Msa1072060 AT1G58030.1 55.932 177 69 3 257 424 347 523 1.37e-50 181
Msa1072060 AT5G36940.1 72.763 257 65 1 8 259 2 258 2.29e-126 379
Msa1072060 AT5G36940.1 49.123 171 71 4 251 416 330 489 1.02e-41 156
Msa1072060 AT3G03720.1 73.387 248 63 2 15 259 6 253 3.91e-125 375
Msa1072060 AT3G03720.1 44.118 170 80 3 251 416 325 483 7.66e-34 134
Msa1072060 AT5G04770.2 39.394 231 136 2 30 257 57 286 1.55e-38 144
Msa1072060 AT3G10600.1 39.535 215 118 3 52 259 78 287 9.76e-38 144
Msa1072060 AT5G04770.1 39.394 231 136 2 30 257 57 286 3.40e-37 143
Msa1072060 AT4G21120.1 35.659 258 148 7 11 259 44 292 6.57e-36 139
Msa1072060 AT1G05940.4 38.521 257 139 7 15 259 27 276 3.01e-35 136
Msa1072060 AT1G05940.3 38.521 257 139 7 15 259 27 276 5.50e-35 136
Msa1072060 AT1G05940.1 38.521 257 139 7 15 259 27 276 7.73e-35 136
Msa1072060 AT2G34960.1 32.068 237 153 3 23 259 57 285 9.28e-33 130
Msa1072060 AT1G17120.1 29.167 240 163 4 18 257 69 301 1.21e-25 109
Msa1072060 AT3G10600.2 36.301 146 81 3 121 259 1 141 3.92e-18 86.7
Msa1072060 AT1G05940.2 34.356 163 96 4 102 259 2 158 1.09e-13 73.2
Msa1072060 AT5G04770.3 35.714 140 86 2 121 257 1 139 4.88e-13 70.9
Msa1072060 AT4G21120.2 36.364 143 80 5 119 259 9 142 8.87e-13 70.1

Find 122 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAATTTGGTTGCGAAAT+TGG 0.081658 7_2:+69011148 Msa1072060:three_prime_UTR
GGAGGCACTGGGACTTTATT+TGG 0.167755 7_2:-69010419 None:intergenic
TAAGGCGATACTAATTAATT+TGG 0.187771 7_2:+69011136 Msa1072060:three_prime_UTR
GGACCCATGTGCAGCAATTT+TGG 0.245225 7_2:+69008351 Msa1072060:CDS
TTGGCACGCCAGCATATTCC+TGG 0.292633 7_2:+69008313 Msa1072060:CDS
GTTACAGGACTCTTATGTTT+GGG 0.299102 7_2:+69008382 Msa1072060:CDS
TTATAACTCACAGTTGTCTT+TGG 0.305623 7_2:-69010576 None:intergenic
GCTTGTAGATGCCCTTCTGC+TGG 0.307862 7_2:+69006541 Msa1072060:CDS
AGAGCATTCTGGACCATCTT+TGG 0.314125 7_2:+69006456 Msa1072060:CDS
TATTTGGAGGAATATATCTT+AGG 0.315952 7_2:-69010403 None:intergenic
GGAGTTGACGGGATGCTTGC+TGG 0.321468 7_2:+69008829 Msa1072060:CDS
ATTAATTTGGTTGCGAAATT+GGG 0.322848 7_2:+69011149 Msa1072060:three_prime_UTR
ATTGTCACGTTGTTTATCTA+AGG 0.332740 7_2:+69011118 Msa1072060:three_prime_UTR
GAACCCTCTTTATTTATTGA+TGG 0.332761 7_2:-69005566 None:intergenic
ATGGAAGTCTCTGATCTTGC+AGG 0.341448 7_2:+69010178 Msa1072060:CDS
CCGCAAGTGCACGGAAATAT+CGG 0.352977 7_2:+69011040 Msa1072060:three_prime_UTR
TTGTGGGTAGGTTCAGAATA+AGG 0.355942 7_2:-69005595 None:intergenic
CTAGGTGTTGGTTCAACAAT+TGG 0.358972 7_2:+69006397 Msa1072060:intron
GTCAAGGGCACAATAATTAC+TGG 0.364044 7_2:+69010127 Msa1072060:CDS
TGTTACAGGACTCTTATGTT+TGG 0.366301 7_2:+69008381 Msa1072060:CDS
GATTGTTGCTGGTGGTTACA+TGG 0.372740 7_2:+69008667 Msa1072060:CDS
GATCGGCTGGGCCTTGGTAC+TGG 0.376671 7_2:+69007149 Msa1072060:CDS
CTTCATGTTTAACTTTCCTT+AGG 0.381227 7_2:+69010927 Msa1072060:CDS
GTTTCTCATCTCATTGCAAT+TGG 0.397730 7_2:+69005863 Msa1072060:CDS
GTGTTTCACAAAAGGGTTCA+TGG 0.399956 7_2:+69005765 Msa1072060:CDS
CTGATTGCTGGATTAGCAGC+TGG 0.407148 7_2:+69006490 Msa1072060:CDS
AATGAAGTGGGAAATTTAAT+CGG 0.409640 7_2:-69005634 None:intergenic
GTAGAATTAGTTTGAAATTG+TGG 0.418934 7_2:-69005612 None:intergenic
GAACGGTGTTTAGAAATAAG+AGG 0.419579 7_2:-69010554 None:intergenic
GATGGGTGGTGTTTCACAAA+AGG 0.422636 7_2:+69005757 Msa1072060:exon
TCCTGGAGAGAAGGAGGCAC+TGG 0.423452 7_2:-69010431 None:intergenic
GTGTTGCTTGGTTGATCGGC+TGG 0.424415 7_2:+69007136 Msa1072060:intron
TAGAATTAGTTTGAAATTGT+GGG 0.424887 7_2:-69005611 None:intergenic
GTAATTATTGTGCCCTTGAC+AGG 0.427628 7_2:-69010124 None:intergenic
CCCAGTGCCTCCTTCTCTCC+AGG 0.433918 7_2:+69010430 Msa1072060:CDS
AAAGGACACCATACAAGATT+AGG 0.433962 7_2:-69007213 None:intergenic
CTAAATAGAAGAAGAGTTGT+TGG 0.434209 7_2:+69010854 Msa1072060:CDS
TTGGTTGATCGGCTGGGCCT+TGG 0.435270 7_2:+69007143 Msa1072060:CDS
CCATAGCGATCATATGCTTA+GGG 0.435534 7_2:+69010882 Msa1072060:CDS
TTCAGTGTTGCTTGGTTGAT+CGG 0.437536 7_2:+69007132 Msa1072060:intron
ACTCTTATGTTTGGGGATCA+AGG 0.440693 7_2:+69008390 Msa1072060:CDS
TTATACCTCTTCAGCAGTGC+TGG 0.444181 7_2:-69008896 None:intergenic
ACAGTAGCTAGAGAGCATTC+TGG 0.453302 7_2:+69006445 Msa1072060:CDS
CACTATTCATACATATGTCT+TGG 0.455035 7_2:+69006574 Msa1072060:CDS
GCCATTGCCATCAAAATTCG+TGG 0.458247 7_2:-69010046 None:intergenic
TGGTGCTGGAGTGTATGTTT+TGG 0.459837 7_2:+69006417 Msa1072060:CDS
GCGGGATATGAACTTCCTAC+TGG 0.469114 7_2:+69008707 Msa1072060:CDS
CTTGTAGATGCCCTTCTGCT+GGG 0.472594 7_2:+69006542 Msa1072060:CDS
CCGATATTTCCGTGCACTTG+CGG 0.475183 7_2:-69011040 None:intergenic
GATCGACACAAATTATATTC+CGG 0.478731 7_2:-69011208 None:intergenic
ATGGGTGGTGTTTCACAAAA+GGG 0.485990 7_2:+69005758 Msa1072060:CDS
TGATTTCTACAATTGAATCC+TGG 0.490418 7_2:-69010448 None:intergenic
ACCATAGCGATCATATGCTT+AGG 0.496774 7_2:+69010881 Msa1072060:CDS
CAATCTCGCGTAACATCTAA+AGG 0.500840 7_2:-69010518 None:intergenic
GGATTCAAGTCTGGATGGGC+GGG 0.501989 7_2:+69008689 Msa1072060:CDS
TGTTGCTTGGTTGATCGGCT+GGG 0.504889 7_2:+69007137 Msa1072060:CDS
GAATATGAAGAGGAAAATAT+CGG 0.505903 7_2:+69010476 Msa1072060:CDS
GGTTACATGGGATTCAAGTC+TGG 0.507654 7_2:+69008680 Msa1072060:CDS
TCCACCATCAATAAATAAAG+AGG 0.509282 7_2:+69005562 None:intergenic
TAAATAGAAGAAGAGTTGTT+GGG 0.509609 7_2:+69010855 Msa1072060:CDS
GTTGGTTCAACAATTGGTGC+TGG 0.513215 7_2:+69006403 Msa1072060:CDS
AGAAATAAGAGGGTAATCAA+TGG 0.513407 7_2:-69010543 None:intergenic
TTGATTAAACTTAAAACAAG+AGG 0.518897 7_2:+69011185 Msa1072060:three_prime_UTR
TTACAGGACTCTTATGTTTG+GGG 0.522945 7_2:+69008383 Msa1072060:CDS
CATACATATGTCTTGGAGAA+GGG 0.524958 7_2:+69006581 Msa1072060:CDS
TACTTGACATTGGTCTCTGT+GGG 0.526800 7_2:-69011086 None:intergenic
TTTCTCAAACTGCACTTGCA+GGG 0.531371 7_2:+69010977 Msa1072060:three_prime_UTR
CCTGGAGAGAAGGAGGCACT+GGG 0.531508 7_2:-69010430 None:intergenic
AGCATCCCGTCAACTCCAAA+GGG 0.533518 7_2:-69008823 None:intergenic
AACGGTGTTTAGAAATAAGA+GGG 0.534923 7_2:-69010553 None:intergenic
AGAAAAGAAATAGCCAAAGA+TGG 0.535093 7_2:-69006469 None:intergenic
GGCACTGGGACTTTATTTGG+AGG 0.535944 7_2:-69010416 None:intergenic
AGTTGCCAGCACTGCTGAAG+AGG 0.536481 7_2:+69008891 Msa1072060:CDS
TGGCACGCCAGCATATTCCT+GGG 0.540143 7_2:+69008314 Msa1072060:CDS
GGGATTCAAGTCTGGATGGG+CGG 0.541106 7_2:+69008688 Msa1072060:CDS
AATACCAAAATTGCTGCACA+TGG 0.543302 7_2:-69008355 None:intergenic
ACATGGGATTCAAGTCTGGA+TGG 0.543971 7_2:+69008684 Msa1072060:CDS
AAGCATCCCGTCAACTCCAA+AGG 0.552340 7_2:-69008824 None:intergenic
CGGGATATGAACTTCCTACT+GGG 0.552815 7_2:+69008708 Msa1072060:CDS
TTTCTACTGCAGGTCAGTGT+GGG 0.553632 7_2:+69010338 Msa1072060:intron
AGTCTCTGATCTTGCAGGGA+TGG 0.553646 7_2:+69010183 Msa1072060:CDS
TGATATGCACTCCCAGCAGA+AGG 0.558377 7_2:-69006553 None:intergenic
ATTGTTGCTGGTGGTTACAT+GGG 0.563511 7_2:+69008668 Msa1072060:CDS
GGTGGCGCTGCTGTTGCTCG+TGG 0.566332 7_2:+69007183 Msa1072060:CDS
ACAATTGAATCCTGGAGAGA+AGG 0.568236 7_2:-69010440 None:intergenic
TATCAATCCCAGGAATATGC+TGG 0.574107 7_2:-69008321 None:intergenic
CCCTAAGCATATGATCGCTA+TGG 0.574884 7_2:-69010882 None:intergenic
TCATACATATGTCTTGGAGA+AGG 0.576894 7_2:+69006580 Msa1072060:CDS
TCCTGGGATTGATATTGTCG+TGG 0.576948 7_2:+69008330 Msa1072060:CDS
ATTAGTTTGAAATTGTGGGT+AGG 0.577913 7_2:-69005607 None:intergenic
AATCAAAGTCGAATATGAAG+AGG 0.578096 7_2:+69010466 Msa1072060:CDS
ATGCAGAGCACAGTGGTACA+AGG 0.579065 7_2:+69008605 Msa1072060:intron
ATGCTAAGACTGCAGCAGCT+AGG 0.582418 7_2:-69010150 None:intergenic
TCCACGACAATATCAATCCC+AGG 0.587193 7_2:-69008331 None:intergenic
TTAAACTTAAAACAAGAGGC+CGG 0.587568 7_2:+69011189 Msa1072060:three_prime_UTR
CATGGGATTCAAGTCTGGAT+GGG 0.589744 7_2:+69008685 Msa1072060:CDS
TTGATGGCAATGGCAAGGGA+TGG 0.592065 7_2:+69010055 Msa1072060:CDS
TTGGTACTGGAATATACGAT+TGG 0.592891 7_2:+69007162 Msa1072060:CDS
GTACTGGAATATACGATTGG+TGG 0.594336 7_2:+69007165 Msa1072060:CDS
AACAACGTGACAATAGATAA+CGG 0.594358 7_2:-69011109 None:intergenic
ATGATAAGTCCGCAAGTGCA+CGG 0.597140 7_2:+69011031 Msa1072060:three_prime_UTR
TGGAAGTCTCTGATCTTGCA+GGG 0.601560 7_2:+69010179 Msa1072060:CDS
CACACTCTAGTTCCTGTCAA+GGG 0.608609 7_2:+69010112 Msa1072060:CDS
TTAACTATTAGACTAACCTA+AGG 0.612834 7_2:-69010943 None:intergenic
TAGATAACGGTACTTGACAT+TGG 0.616317 7_2:-69011096 None:intergenic
GTACTTGACATTGGTCTCTG+TGG 0.617313 7_2:-69011087 None:intergenic
AAAAGATTAAAGTACCCAGT+AGG 0.617437 7_2:-69008722 None:intergenic
ATTGAATCCTGGAGAGAAGG+AGG 0.617882 7_2:-69010437 None:intergenic
GATATGCACTCCCAGCAGAA+GGG 0.619038 7_2:-69006552 None:intergenic
GCACACTCTAGTTCCTGTCA+AGG 0.620545 7_2:+69010111 Msa1072060:CDS
CCACCATCAATAAATAAAGA+GGG 0.621367 7_2:+69005563 None:intergenic
GATAACGCTTTAGCAAGAAG+AGG 0.622934 7_2:-69005839 None:intergenic
ACTCACAGTTGTCTTTGGAA+CGG 0.623297 7_2:-69010571 None:intergenic
TGGGTAGGTTCAGAATAAGG+AGG 0.634010 7_2:-69005592 None:intergenic
CAGCACAGATATTGCCACCA+TGG 0.640973 7_2:-69010378 None:intergenic
AACATGAAGCTGCATATGTG+AGG 0.644006 7_2:-69010913 None:intergenic
ATAGAAGAAGAGTTGTTGGG+TGG 0.647520 7_2:+69010858 Msa1072060:CDS
CATAGCGATCATATGCTTAG+GGG 0.658596 7_2:+69010883 Msa1072060:CDS
ATACCAAAATTGCTGCACAT+GGG 0.679743 7_2:-69008354 None:intergenic
AATCGTATATTCCAGTACCA+AGG 0.694535 7_2:-69007160 None:intergenic
CTTATGTTTGGGGATCAAGG+AGG 0.713389 7_2:+69008393 Msa1072060:CDS
TACATACATGCAGAGCACAG+TGG 0.778446 7_2:+69008598 Msa1072060:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAATAAAAAAATCAAAA+GGG - chr7_2:69006018-69006037 None:intergenic 10.0%
!!! TTTTGAATAAAAAAATCAAA+AGG - chr7_2:69006019-69006038 None:intergenic 10.0%
!!! ATTAGTTTTATTGTATTTTT+TGG + chr7_2:69006702-69006721 Msa1072060:intron 10.0%
!! AATCAAGTATAAAAAAAAAA+AGG + chr7_2:69007403-69007422 Msa1072060:intron 10.0%
!! ATCAAGTATAAAAAAAAAAA+GGG + chr7_2:69007404-69007423 Msa1072060:intron 10.0%
!! ATTATAATAAGTATTAAGTT+TGG - chr7_2:69010751-69010770 None:intergenic 10.0%
!! GTAAAAAGAATTAAATTAAA+GGG + chr7_2:69011285-69011304 Msa1072060:three_prime_UTR 10.0%
!! TAAAAAGAATTAAATTAAAG+GGG + chr7_2:69011286-69011305 Msa1072060:three_prime_UTR 10.0%
!! TCATAAAGAAAAAATAAGAT+AGG - chr7_2:69007062-69007081 None:intergenic 15.0%
!!! TATCTTATTTTTTCTTTATG+AGG + chr7_2:69007061-69007080 Msa1072060:intron 15.0%
!!! ATCTTATTTTTTCTTTATGA+GGG + chr7_2:69007062-69007081 Msa1072060:intron 15.0%
!! AAGAATTAAAAAGTTAAAGT+TGG - chr7_2:69007294-69007313 None:intergenic 15.0%
!! TCAAGTATAAAAAAAAAAAG+GGG + chr7_2:69007405-69007424 Msa1072060:intron 15.0%
!! TCATTAAATAATCAATGTAT+CGG - chr7_2:69007556-69007575 None:intergenic 15.0%
!! TTTCATGTTTATTTCAATTT+GGG + chr7_2:69007843-69007862 Msa1072060:intron 15.0%
!!! AAAGTAGTCTTATTATTAAT+TGG + chr7_2:69007876-69007895 Msa1072060:intron 15.0%
!!! GGTTTATTTAATTTATAACT+TGG + chr7_2:69007897-69007916 Msa1072060:intron 15.0%
!!! TAGTATACTAGTATTTATTT+TGG + chr7_2:69007988-69008007 Msa1072060:intron 15.0%
!! CTTACTAAATTATCATTATT+AGG + chr7_2:69009742-69009761 Msa1072060:intron 15.0%
!! TAGGAATAAATATAAAATCT+TGG + chr7_2:69009761-69009780 Msa1072060:intron 15.0%
!! ATAGAAATGCAATTTATATT+TGG - chr7_2:69009910-69009929 None:intergenic 15.0%
!! TTATTTATGTCACAAAAAAA+TGG - chr7_2:69010091-69010110 None:intergenic 15.0%
!! TAGAAAATCAAAATACATAT+CGG - chr7_2:69010324-69010343 None:intergenic 15.0%
!! TTAATACTTATTATAATCTC+TGG + chr7_2:69010754-69010773 Msa1072060:intron 15.0%
!!! TTGTATTTTATTATTGTAAC+AGG + chr7_2:69011247-69011266 Msa1072060:three_prime_UTR 15.0%
!! CGTAAAAAGAATTAAATTAA+AGG + chr7_2:69011284-69011303 Msa1072060:three_prime_UTR 15.0%
!!! TAGAATTAGTTTGAAATTGT+GGG - chr7_2:69005614-69005633 None:intergenic 20.0%
!!! TTTTATCCTTTTTTTTCATC+TGG + chr7_2:69005922-69005941 Msa1072060:intron 20.0%
!!! TTTATCCTTTTTTTTCATCT+GGG + chr7_2:69005923-69005942 Msa1072060:intron 20.0%
!!! TTTTATGATGATAACTTACT+AGG + chr7_2:69006379-69006398 Msa1072060:intron 20.0%
!! CAAGTATAAAAAAAAAAAGG+GGG + chr7_2:69007406-69007425 Msa1072060:intron 20.0%
!!! TTTTTGCTTATAATTGTGAT+CGG - chr7_2:69007485-69007504 None:intergenic 20.0%
!! CATTAAATAATCAATGTATC+GGG - chr7_2:69007555-69007574 None:intergenic 20.0%
!!! TCTTTATTTATAAATGTGAC+AGG + chr7_2:69007590-69007609 Msa1072060:intron 20.0%
!!! TTCAATGTTTTCAAAATATG+AGG - chr7_2:69007648-69007667 None:intergenic 20.0%
!! CTTTCATGTTTATTTCAATT+TGG + chr7_2:69007842-69007861 Msa1072060:intron 20.0%
!! TTCATGTTTATTTCAATTTG+GGG + chr7_2:69007844-69007863 Msa1072060:intron 20.0%
!! ATAGATATGTTTCTTTGTAT+AGG + chr7_2:69008252-69008271 Msa1072060:intron 20.0%
!!! ATTAATAGATATTTTCCCTT+TGG + chr7_2:69008808-69008827 Msa1072060:intron 20.0%
!! TTCGATTATATATCAATAGT+AGG - chr7_2:69009186-69009205 None:intergenic 20.0%
!! TACTATTGATATATAATCGA+AGG + chr7_2:69009185-69009204 Msa1072060:intron 20.0%
!!! TTTGTAACTTCATAAAGTTT+TGG + chr7_2:69009440-69009459 Msa1072060:intron 20.0%
!!! AATATAATCAGTTGATACTA+GGG - chr7_2:69009626-69009645 None:intergenic 20.0%
!!! AAATATAATCAGTTGATACT+AGG - chr7_2:69009627-69009646 None:intergenic 20.0%
!! TCTGTAATTTCTCTTATATT+AGG + chr7_2:69009652-69009671 Msa1072060:intron 20.0%
!! AACTTTAATTCAAAACATGA+AGG - chr7_2:69009694-69009713 None:intergenic 20.0%
!! GAATAAATATAAAATCTTGG+TGG + chr7_2:69009764-69009783 Msa1072060:intron 20.0%
!! TTGATTAAACTTAAAACAAG+AGG + chr7_2:69011185-69011204 Msa1072060:three_prime_UTR 20.0%
!! GTAGAATTAGTTTGAAATTG+TGG - chr7_2:69005615-69005634 None:intergenic 25.0%
! AATGAAGTGGGAAATTTAAT+CGG - chr7_2:69005637-69005656 None:intergenic 25.0%
!!! TTGTTGTTGTTTTTCTTTGA+TGG + chr7_2:69005739-69005758 Msa1072060:exon 25.0%
!!! TGTTGTTGTTTTTCTTTGAT+GGG + chr7_2:69005740-69005759 Msa1072060:exon 25.0%
!!! TTGAATTCTGTTTTGAAACA+TGG + chr7_2:69005951-69005970 Msa1072060:intron 25.0%
! TCAAAAAGAGAAATGATGTT+TGG + chr7_2:69006033-69006052 Msa1072060:intron 25.0%
! GATATAGAGATAAACAGATA+CGG + chr7_2:69006137-69006156 Msa1072060:intron 25.0%
!!! TACGAAAATGGTGTTTTTTT+TGG + chr7_2:69006206-69006225 Msa1072060:intron 25.0%
!! GTTTATAGTTTACTGTGTTT+TGG + chr7_2:69006337-69006356 Msa1072060:intron 25.0%
!!! AGGATGAAAAGTTCTAAAAA+GGG - chr7_2:69006620-69006639 None:intergenic 25.0%
!!! AAGGATGAAAAGTTCTAAAA+AGG - chr7_2:69006621-69006640 None:intergenic 25.0%
! TCTAATGTGATCTTATTATC+AGG + chr7_2:69006763-69006782 Msa1072060:intron 25.0%
!!! TTTCTAGTAAAACCAAGTTT+TGG - chr7_2:69006806-69006825 None:intergenic 25.0%
! TACTCAAACATGTTAAAACT+TGG - chr7_2:69006869-69006888 None:intergenic 25.0%
!!! TTATTTTTTCTTTATGAGGG+TGG + chr7_2:69007065-69007084 Msa1072060:intron 25.0%
! TTATTTATAAATGTGACAGG+AGG + chr7_2:69007593-69007612 Msa1072060:intron 25.0%
! TTTATTTCAATTTGGGGATT+TGG + chr7_2:69007850-69007869 Msa1072060:intron 25.0%
! AGCAAATAAAGTGAATAGTT+TGG + chr7_2:69008137-69008156 Msa1072060:intron 25.0%
!!! ATTTTGGTATTACTTGTTAC+AGG + chr7_2:69008367-69008386 Msa1072060:CDS 25.0%
! TGAATAATTGCTGAATGAAA+AGG - chr7_2:69008423-69008442 None:intergenic 25.0%
!!! AGAGAAAATTTTAGTTCACA+CGG - chr7_2:69008474-69008493 None:intergenic 25.0%
!! GAACTAAAATTTTCTCTTCT+TGG + chr7_2:69008477-69008496 Msa1072060:intron 25.0%
!! TAAAATTTTCTCTTCTTGGT+TGG + chr7_2:69008481-69008500 Msa1072060:intron 25.0%
!!! GACAAGTTTTAAGTAATAAG+AGG - chr7_2:69008780-69008799 None:intergenic 25.0%
!! ATAATTTCATCAGCAGATTT+TGG + chr7_2:69008964-69008983 Msa1072060:intron 25.0%
!! CTTGACTACAACTTTTTATT+GGG + chr7_2:69009012-69009031 Msa1072060:intron 25.0%
! TAATGTTTCACTTCATTGAT+AGG + chr7_2:69009233-69009252 Msa1072060:intron 25.0%
! TTACAAACTATAAACTTACG+CGG - chr7_2:69009427-69009446 None:intergenic 25.0%
! ACTAGGGAAGAATAAATAAT+TGG - chr7_2:69009610-69009629 None:intergenic 25.0%
! AATTTCTCTTATATTAGGTG+AGG + chr7_2:69009657-69009676 Msa1072060:intron 25.0%
! ATTTCTCTTATATTAGGTGA+GGG + chr7_2:69009658-69009677 Msa1072060:intron 25.0%
! ATAGTAAGACTCAATATATG+AGG + chr7_2:69009820-69009839 Msa1072060:intron 25.0%
! ATAAATTGCATTTCTATTGC+TGG + chr7_2:69009913-69009932 Msa1072060:intron 25.0%
!!! AGTTTTGTGATAAATGGAAA+AGG - chr7_2:69009952-69009971 None:intergenic 25.0%
! TTTATGTCACAAAAAAATGG+TGG - chr7_2:69010088-69010107 None:intergenic 25.0%
! CCATTATCAATTACATAAAG+TGG - chr7_2:69010214-69010233 None:intergenic 25.0%
! CCACTTTATGTAATTGATAA+TGG + chr7_2:69010211-69010230 Msa1072060:intron 25.0%
! AAATGAATAATAACCACTCA+AGG + chr7_2:69010267-69010286 Msa1072060:intron 25.0%
! TATTTGGAGGAATATATCTT+AGG - chr7_2:69010406-69010425 None:intergenic 25.0%
! GAATATGAAGAGGAAAATAT+CGG + chr7_2:69010476-69010495 Msa1072060:CDS 25.0%
! TGTTTGATAGAGATTGATAA+AGG - chr7_2:69010612-69010631 None:intergenic 25.0%
! ATCCAAAACAACAAAACAAA+AGG - chr7_2:69010828-69010847 None:intergenic 25.0%
! TAAATAGAAGAAGAGTTGTT+GGG + chr7_2:69010855-69010874 Msa1072060:CDS 25.0%
! TTAACTATTAGACTAACCTA+AGG - chr7_2:69010946-69010965 None:intergenic 25.0%
! TAAGGCGATACTAATTAATT+TGG + chr7_2:69011136-69011155 Msa1072060:three_prime_UTR 25.0%
!! AATTAATTTGGTTGCGAAAT+TGG + chr7_2:69011148-69011167 Msa1072060:three_prime_UTR 25.0%
!! ATTAATTTGGTTGCGAAATT+GGG + chr7_2:69011149-69011168 Msa1072060:three_prime_UTR 25.0%
! ATTAGTTTGAAATTGTGGGT+AGG - chr7_2:69005610-69005629 None:intergenic 30.0%
! TTTTGAGCAATGAATGAAGT+GGG - chr7_2:69005649-69005668 None:intergenic 30.0%
!! TTTTTGAGCAATGAATGAAG+TGG - chr7_2:69005650-69005669 None:intergenic 30.0%
TAACCCAACTAATACGAAAA+TGG + chr7_2:69006194-69006213 Msa1072060:intron 30.0%
! ACACCATTTTCGTATTAGTT+GGG - chr7_2:69006200-69006219 None:intergenic 30.0%
! AACACCATTTTCGTATTAGT+TGG - chr7_2:69006201-69006220 None:intergenic 30.0%
AGAAAAGAAATAGCCAAAGA+TGG - chr7_2:69006472-69006491 None:intergenic 30.0%
CACTATTCATACATATGTCT+TGG + chr7_2:69006574-69006593 Msa1072060:CDS 30.0%
AATCTAATCCAAACACACAA+AGG - chr7_2:69006663-69006682 None:intergenic 30.0%
! ATGATTTTGTCTCCAAAACT+TGG + chr7_2:69006791-69006810 Msa1072060:intron 30.0%
TATAAAGTAGCTTCTGTGTT+AGG + chr7_2:69006829-69006848 Msa1072060:intron 30.0%
!!! GTATTTCTGACTTGTTGTTT+TGG + chr7_2:69006975-69006994 Msa1072060:intron 30.0%
AACTCAACAGAAGAGTTAAA+AGG - chr7_2:69007234-69007253 None:intergenic 30.0%
TGTGATCAACAACTTTGATA+AGG - chr7_2:69007938-69007957 None:intergenic 30.0%
!! TTGGTTCTTTAAAACTAGTG+AGG + chr7_2:69008007-69008026 Msa1072060:intron 30.0%
!! TGGTTCTTTAAAACTAGTGA+GGG + chr7_2:69008008-69008027 Msa1072060:intron 30.0%
! GTGATTTTACAAATGACAAC+AGG - chr7_2:69008098-69008117 None:intergenic 30.0%
TAAAGAGCAAATATGTGCAA+AGG - chr7_2:69008516-69008535 None:intergenic 30.0%
!! AATATCCAACTGTTTTGTTC+TGG + chr7_2:69008552-69008571 Msa1072060:intron 30.0%
!! ATATCCAACTGTTTTGTTCT+GGG + chr7_2:69008553-69008572 Msa1072060:intron 30.0%
! AAAAGATTAAAGTACCCAGT+AGG - chr7_2:69008725-69008744 None:intergenic 30.0%
TTCATTTCCACATACATGTT+TGG + chr7_2:69008749-69008768 Msa1072060:intron 30.0%
!!! ACAGTCTTTTTTGCATATGT+AGG + chr7_2:69008859-69008878 Msa1072060:CDS 30.0%
AGTTGTAGTCAAGGTAAAAT+TGG - chr7_2:69009005-69009024 None:intergenic 30.0%
CCAATAAAAAGTTGTAGTCA+AGG - chr7_2:69009014-69009033 None:intergenic 30.0%
! CCTTGACTACAACTTTTTAT+TGG + chr7_2:69009011-69009030 Msa1072060:intron 30.0%
!!! TCATGGAAGTTATTTTTGTG+TGG - chr7_2:69009046-69009065 None:intergenic 30.0%
TATAATCGAAGGATGTTCAA+TGG + chr7_2:69009196-69009215 Msa1072060:intron 30.0%
TCAGGATCAATTGCATAATA+AGG - chr7_2:69009360-69009379 None:intergenic 30.0%
!! GTAACTTCATAAAGTTTTGG+TGG + chr7_2:69009443-69009462 Msa1072060:intron 30.0%
! ATTAATGGATACCTCTGAAA+TGG + chr7_2:69009584-69009603 Msa1072060:intron 30.0%
TAAATAATTGGCCATTTCAG+AGG - chr7_2:69009598-69009617 None:intergenic 30.0%
! ATATAAAATCTTGGTGGATG+TGG + chr7_2:69009770-69009789 Msa1072060:intron 30.0%
AGGACTGTTCATATCTTATA+AGG + chr7_2:69009840-69009859 Msa1072060:intron 30.0%
!! CTGAGAAGTTTTGTGATAAA+TGG - chr7_2:69009958-69009977 None:intergenic 30.0%
!!! GTATTTTGATTTTCTACTGC+AGG + chr7_2:69010328-69010347 Msa1072060:intron 30.0%
TGATTTCTACAATTGAATCC+TGG - chr7_2:69010451-69010470 None:intergenic 30.0%
AATCAAAGTCGAATATGAAG+AGG + chr7_2:69010466-69010485 Msa1072060:CDS 30.0%
AGAAATAAGAGGGTAATCAA+TGG - chr7_2:69010546-69010565 None:intergenic 30.0%
TTATAACTCACAGTTGTCTT+TGG - chr7_2:69010579-69010598 None:intergenic 30.0%
ATAGAGATTGATAAAGGAGA+AGG - chr7_2:69010606-69010625 None:intergenic 30.0%
TTGCCTTTCTTTCTGTTATT+TGG + chr7_2:69010779-69010798 Msa1072060:intron 30.0%
ATGCCAAATAACAGAAAGAA+AGG - chr7_2:69010785-69010804 None:intergenic 30.0%
! ACAACAAAACAAAAGGTGTA+AGG - chr7_2:69010821-69010840 None:intergenic 30.0%
!!! CACCTTTTGTTTTGTTGTTT+TGG + chr7_2:69010823-69010842 Msa1072060:intron 30.0%
CTAAATAGAAGAAGAGTTGT+TGG + chr7_2:69010854-69010873 Msa1072060:CDS 30.0%
! CTTCATGTTTAACTTTCCTT+AGG + chr7_2:69010927-69010946 Msa1072060:CDS 30.0%
AACAACGTGACAATAGATAA+CGG - chr7_2:69011112-69011131 None:intergenic 30.0%
ATTGTCACGTTGTTTATCTA+AGG + chr7_2:69011118-69011137 Msa1072060:three_prime_UTR 30.0%
TTAAACTTAAAACAAGAGGC+CGG + chr7_2:69011189-69011208 Msa1072060:three_prime_UTR 30.0%
GATCGACACAAATTATATTC+CGG - chr7_2:69011211-69011230 None:intergenic 30.0%
!!! TGTTGTTTTTCTTTGATGGG+TGG + chr7_2:69005743-69005762 Msa1072060:exon 35.0%
! CATGGAGATTTTTCACTAGA+AGG + chr7_2:69005783-69005802 Msa1072060:CDS 35.0%
! ATTTTTCACTAGAAGGAAGC+AGG + chr7_2:69005790-69005809 Msa1072060:CDS 35.0%
GTTTCTCATCTCATTGCAAT+TGG + chr7_2:69005863-69005882 Msa1072060:CDS 35.0%
AGAAGCCCAGATGAAAAAAA+AGG - chr7_2:69005931-69005950 None:intergenic 35.0%
GAGAAATGATGTTTGGACTT+TGG + chr7_2:69006040-69006059 Msa1072060:intron 35.0%
TTGTCCTATCACTAAGCAAA+AGG - chr7_2:69006271-69006290 None:intergenic 35.0%
ATCAGTACATGCACATGATT+TGG + chr7_2:69006315-69006334 Msa1072060:intron 35.0%
GATGATAACTTACTAGGTGT+TGG + chr7_2:69006385-69006404 Msa1072060:intron 35.0%
!!! GCTATTTCTTTTCTGATTGC+TGG + chr7_2:69006478-69006497 Msa1072060:CDS 35.0%
!! TGCTTTTTGTTATGCAGAGT+TGG + chr7_2:69006519-69006538 Msa1072060:CDS 35.0%
TCATACATATGTCTTGGAGA+AGG + chr7_2:69006580-69006599 Msa1072060:CDS 35.0%
CATACATATGTCTTGGAGAA+GGG + chr7_2:69006581-69006600 Msa1072060:CDS 35.0%
TAAAAGGACAAAGCATAGCA+AGG - chr7_2:69006640-69006659 None:intergenic 35.0%
! TCCTTTTACCTTTGTGTGTT+TGG + chr7_2:69006652-69006671 Msa1072060:intron 35.0%
TCCAAACACACAAAGGTAAA+AGG - chr7_2:69006656-69006675 None:intergenic 35.0%
! TTTTCCTCGTGCTCATTATA+TGG + chr7_2:69007007-69007026 Msa1072060:intron 35.0%
!!! TCTTTGTTTTCAGTGTTGCT+TGG + chr7_2:69007124-69007143 Msa1072060:intron 35.0%
AATCGTATATTCCAGTACCA+AGG - chr7_2:69007163-69007182 None:intergenic 35.0%
! TTGGTACTGGAATATACGAT+TGG + chr7_2:69007162-69007181 Msa1072060:CDS 35.0%
GCATAACTCCTAATCTTGTA+TGG + chr7_2:69007205-69007224 Msa1072060:intron 35.0%
AAAGGACACCATACAAGATT+AGG - chr7_2:69007216-69007235 None:intergenic 35.0%
! TGTTGAGTTTTTGCTTGCTT+TGG + chr7_2:69007245-69007264 Msa1072060:intron 35.0%
AATTCTTTAGTGAGTGAACC+AGG + chr7_2:69007307-69007326 Msa1072060:intron 35.0%
ATTCTTTAGTGAGTGAACCA+GGG + chr7_2:69007308-69007327 Msa1072060:intron 35.0%
GGATGGAGTAATAAAGTCTT+AGG - chr7_2:69007464-69007483 None:intergenic 35.0%
TGCTTATAATTGTGATCGGA+TGG - chr7_2:69007481-69007500 None:intergenic 35.0%
CACACTACTATCTGATCATT+AGG + chr7_2:69007954-69007973 Msa1072060:intron 35.0%
! AACAGGTCATGTTTCCTTTT+TGG - chr7_2:69008081-69008100 None:intergenic 35.0%
!! TTTGTATAGGCTCCACTTTT+TGG + chr7_2:69008265-69008284 Msa1072060:intron 35.0%
! AGACAATCTACCGTTCTTTT+TGG + chr7_2:69008294-69008313 Msa1072060:CDS 35.0%
ATACCAAAATTGCTGCACAT+GGG - chr7_2:69008357-69008376 None:intergenic 35.0%
AATACCAAAATTGCTGCACA+TGG - chr7_2:69008358-69008377 None:intergenic 35.0%
TGTTACAGGACTCTTATGTT+TGG + chr7_2:69008381-69008400 Msa1072060:CDS 35.0%
GTTACAGGACTCTTATGTTT+GGG + chr7_2:69008382-69008401 Msa1072060:CDS 35.0%
TTACAGGACTCTTATGTTTG+GGG + chr7_2:69008383-69008402 Msa1072060:CDS 35.0%
!!! TTGCTTTTTGTGATTGTTGC+TGG + chr7_2:69008656-69008675 Msa1072060:CDS 35.0%
TTCCACATACATGTTTGGTT+TGG + chr7_2:69008754-69008773 Msa1072060:intron 35.0%
!!! TATTTTCCCTTTGGAGTTGA+CGG + chr7_2:69008817-69008836 Msa1072060:CDS 35.0%
!!! GTTATTTTTGTGTGGCAATG+TGG - chr7_2:69009038-69009057 None:intergenic 35.0%
TAAGTTACGGTAAGAAGGAA+AGG - chr7_2:69009078-69009097 None:intergenic 35.0%
ACACATAAGTTACGGTAAGA+AGG - chr7_2:69009083-69009102 None:intergenic 35.0%
GACAAGTTTACTGTTTGTGA+TGG + chr7_2:69009487-69009506 Msa1072060:intron 35.0%
AGGTATCCATTAATCTACCT+GGG - chr7_2:69009578-69009597 None:intergenic 35.0%
TTGACGAGCAAAAAACTGAA+TGG + chr7_2:69010000-69010019 Msa1072060:intron 35.0%
!! AATTTTGATGGCAATGGCAA+GGG + chr7_2:69010051-69010070 Msa1072060:CDS 35.0%
! TGCAGTCTTAGCATTTTCTA+TGG + chr7_2:69010159-69010178 Msa1072060:CDS 35.0%
! AACTCTTTTAGCATTCACCA+TGG + chr7_2:69010361-69010380 Msa1072060:CDS 35.0%
! TAGATAACGGTACTTGACAT+TGG - chr7_2:69011099-69011118 None:intergenic 35.0%
TTGTGGGTAGGTTCAGAATA+AGG - chr7_2:69005598-69005617 None:intergenic 40.0%
ATGGGTGGTGTTTCACAAAA+GGG + chr7_2:69005758-69005777 Msa1072060:CDS 40.0%
GTGTTTCACAAAAGGGTTCA+TGG + chr7_2:69005765-69005784 Msa1072060:CDS 40.0%
!!! AGAGGCTTAGTGTTTTGACT+TGG - chr7_2:69005824-69005843 None:intergenic 40.0%
GATAACGCTTTAGCAAGAAG+AGG - chr7_2:69005842-69005861 None:intergenic 40.0%
! AAACAGATACGGTGTCAGAT+AGG + chr7_2:69006148-69006167 Msa1072060:intron 40.0%
CCTATCACTAAGCAAAAGGT+GGG - chr7_2:69006267-69006286 None:intergenic 40.0%
TCCTATCACTAAGCAAAAGG+TGG - chr7_2:69006268-69006287 None:intergenic 40.0%
!! CTAGGTGTTGGTTCAACAAT+TGG + chr7_2:69006397-69006416 Msa1072060:intron 40.0%
TCACGTAGATGTGTTCAAAC+AGG - chr7_2:69006900-69006919 None:intergenic 40.0%
! GAGGGTGGAGATTTTCTATT+TGG + chr7_2:69007080-69007099 Msa1072060:intron 40.0%
!! TTCAGTGTTGCTTGGTTGAT+CGG + chr7_2:69007132-69007151 Msa1072060:intron 40.0%
GTACTGGAATATACGATTGG+TGG + chr7_2:69007165-69007184 Msa1072060:CDS 40.0%
TTCTTTAGTGAGTGAACCAG+GGG + chr7_2:69007309-69007328 Msa1072060:intron 40.0%
TGCACTACTAAAAATTCCCC+TGG - chr7_2:69007328-69007347 None:intergenic 40.0%
!!! AGGGGAATTTTTAGTAGTGC+AGG + chr7_2:69007327-69007346 Msa1072060:intron 40.0%
! GAAGCATTAACAACAGGAAC+AGG - chr7_2:69007791-69007810 None:intergenic 40.0%
!! CGAGAAGAAGCATTAACAAC+AGG - chr7_2:69007797-69007816 None:intergenic 40.0%
! TCTGATCATTAGGAAGTGTG+TGG + chr7_2:69007964-69007983 Msa1072060:intron 40.0%
! CTGATCATTAGGAAGTGTGT+GGG + chr7_2:69007965-69007984 Msa1072060:intron 40.0%
TTGTCTAGACCACCAAAAAG+TGG - chr7_2:69008280-69008299 None:intergenic 40.0%
TATCAATCCCAGGAATATGC+TGG - chr7_2:69008324-69008343 None:intergenic 40.0%
ACTCTTATGTTTGGGGATCA+AGG + chr7_2:69008390-69008409 Msa1072060:CDS 40.0%
AGAGCAAATATGTGCAAAGG+AGG - chr7_2:69008513-69008532 None:intergenic 40.0%
AACTCCCAGAACAAAACAGT+TGG - chr7_2:69008560-69008579 None:intergenic 40.0%
! CTTTTTGTGATTGTTGCTGG+TGG + chr7_2:69008659-69008678 Msa1072060:CDS 40.0%
ATTGTTGCTGGTGGTTACAT+GGG + chr7_2:69008668-69008687 Msa1072060:CDS 40.0%
!!! ATTTTCCCTTTGGAGTTGAC+GGG + chr7_2:69008818-69008837 Msa1072060:CDS 40.0%
CTTACCGTAACTTATGTGTG+TGG + chr7_2:69009084-69009103 Msa1072060:intron 40.0%
AGAGCCACACACATAAGTTA+CGG - chr7_2:69009091-69009110 None:intergenic 40.0%
GTGTTGTGGAATGTATATGC+TGG + chr7_2:69009308-69009327 Msa1072060:intron 40.0%
TCGGAAAATGCAGAGGATAT+GGG - chr7_2:69009387-69009406 None:intergenic 40.0%
GGCAGCTACATTATAAATGC+TGG + chr7_2:69009508-69009527 Msa1072060:intron 40.0%
TACTTCCCCAGGTAGATTAA+TGG + chr7_2:69009569-69009588 Msa1072060:intron 40.0%
GGTATCCATTAATCTACCTG+GGG - chr7_2:69009577-69009596 None:intergenic 40.0%
! GAGGTATCCATTAATCTACC+TGG - chr7_2:69009579-69009598 None:intergenic 40.0%
TGGATGTGGAATGAAGTGTA+TGG + chr7_2:69009784-69009803 Msa1072060:intron 40.0%
!! GAATTTTGATGGCAATGGCA+AGG + chr7_2:69010050-69010069 Msa1072060:CDS 40.0%
GTAATTATTGTGCCCTTGAC+AGG - chr7_2:69010127-69010146 None:intergenic 40.0%
! GTCAAGGGCACAATAATTAC+TGG + chr7_2:69010127-69010146 Msa1072060:CDS 40.0%
CATGAGAACATGCTCTTTCA+TGG - chr7_2:69010243-69010262 None:intergenic 40.0%
TGCACATACATTTCCTTGAG+TGG - chr7_2:69010283-69010302 None:intergenic 40.0%
! TCTTTTAGCATTCACCATGG+TGG + chr7_2:69010364-69010383 Msa1072060:CDS 40.0%
ACAATTGAATCCTGGAGAGA+AGG - chr7_2:69010443-69010462 None:intergenic 40.0%
CAATCTCGCGTAACATCTAA+AGG - chr7_2:69010521-69010540 None:intergenic 40.0%
! ACTCACAGTTGTCTTTGGAA+CGG - chr7_2:69010574-69010593 None:intergenic 40.0%
ATAGAAGAAGAGTTGTTGGG+TGG + chr7_2:69010858-69010877 Msa1072060:CDS 40.0%
ACCATAGCGATCATATGCTT+AGG + chr7_2:69010881-69010900 Msa1072060:CDS 40.0%
CCATAGCGATCATATGCTTA+GGG + chr7_2:69010882-69010901 Msa1072060:CDS 40.0%
CATAGCGATCATATGCTTAG+GGG + chr7_2:69010883-69010902 Msa1072060:CDS 40.0%
AACATGAAGCTGCATATGTG+AGG - chr7_2:69010916-69010935 None:intergenic 40.0%
! TTTTCTCAAACTGCACTTGC+AGG + chr7_2:69010976-69010995 Msa1072060:three_prime_UTR 40.0%
TTTCTCAAACTGCACTTGCA+GGG + chr7_2:69010977-69010996 Msa1072060:three_prime_UTR 40.0%
! TACTTGACATTGGTCTCTGT+GGG - chr7_2:69011089-69011108 None:intergenic 40.0%
TGGGTAGGTTCAGAATAAGG+AGG - chr7_2:69005595-69005614 None:intergenic 45.0%
GATGGGTGGTGTTTCACAAA+AGG + chr7_2:69005757-69005776 Msa1072060:exon 45.0%
! CCCACCTTTTGCTTAGTGAT+AGG + chr7_2:69006264-69006283 Msa1072060:intron 45.0%
! GTTGGTTCAACAATTGGTGC+TGG + chr7_2:69006403-69006422 Msa1072060:CDS 45.0%
!! TGGTGCTGGAGTGTATGTTT+TGG + chr7_2:69006417-69006436 Msa1072060:CDS 45.0%
!!! GCTGGAGTGTATGTTTTGGT+TGG + chr7_2:69006421-69006440 Msa1072060:CDS 45.0%
!! ACAGTAGCTAGAGAGCATTC+TGG + chr7_2:69006445-69006464 Msa1072060:CDS 45.0%
! AGAGCATTCTGGACCATCTT+TGG + chr7_2:69006456-69006475 Msa1072060:CDS 45.0%
TCCTCGTGCTCATTATATGG+TGG + chr7_2:69007010-69007029 Msa1072060:intron 45.0%
ACCACCATATAATGAGCACG+AGG - chr7_2:69007014-69007033 None:intergenic 45.0%
AATGCTTCTTCTCGCTCTCA+CGG + chr7_2:69007803-69007822 Msa1072060:intron 45.0%
! TTTAAAACTAGTGAGGGCCC+AGG + chr7_2:69008014-69008033 Msa1072060:intron 45.0%
!!! CCTTTTTGGTTCACTGACCA+GGG - chr7_2:69008067-69008086 None:intergenic 45.0%
!!! TCCTTTTTGGTTCACTGACC+AGG - chr7_2:69008068-69008087 None:intergenic 45.0%
!!! GTATAGGCTCCACTTTTTGG+TGG + chr7_2:69008268-69008287 Msa1072060:intron 45.0%
TCCTGGGATTGATATTGTCG+TGG + chr7_2:69008330-69008349 Msa1072060:CDS 45.0%
TCCACGACAATATCAATCCC+AGG - chr7_2:69008334-69008353 None:intergenic 45.0%
CTTATGTTTGGGGATCAAGG+AGG + chr7_2:69008393-69008412 Msa1072060:CDS 45.0%
TACATACATGCAGAGCACAG+TGG + chr7_2:69008598-69008617 Msa1072060:intron 45.0%
GATTGTTGCTGGTGGTTACA+TGG + chr7_2:69008667-69008686 Msa1072060:CDS 45.0%
GGTTACATGGGATTCAAGTC+TGG + chr7_2:69008680-69008699 Msa1072060:CDS 45.0%
ACATGGGATTCAAGTCTGGA+TGG + chr7_2:69008684-69008703 Msa1072060:CDS 45.0%
CATGGGATTCAAGTCTGGAT+GGG + chr7_2:69008685-69008704 Msa1072060:CDS 45.0%
CGGGATATGAACTTCCTACT+GGG + chr7_2:69008708-69008727 Msa1072060:CDS 45.0%
GGCCAAACCAAACATGTATG+TGG - chr7_2:69008759-69008778 None:intergenic 45.0%
TTATACCTCTTCAGCAGTGC+TGG - chr7_2:69008899-69008918 None:intergenic 45.0%
AGGAAAGGAAACTGCACTCA+TGG - chr7_2:69009063-69009082 None:intergenic 45.0%
!! GCTTCACTGTTTCTGTGTTG+TGG + chr7_2:69009294-69009313 Msa1072060:intron 45.0%
! TATGCTGGTCTCTGTTGTTG+TGG + chr7_2:69009323-69009342 Msa1072060:intron 45.0%
GGAAAATGCAGAGGATATGG+GGG - chr7_2:69009385-69009404 None:intergenic 45.0%
CGGAAAATGCAGAGGATATG+GGG - chr7_2:69009386-69009405 None:intergenic 45.0%
GTCGGAAAATGCAGAGGATA+TGG - chr7_2:69009388-69009407 None:intergenic 45.0%
! TTCGCAGCCACGAATTTTGA+TGG + chr7_2:69010039-69010058 Msa1072060:intron 45.0%
!! GCCACGAATTTTGATGGCAA+TGG + chr7_2:69010045-69010064 Msa1072060:intron 45.0%
GCCATTGCCATCAAAATTCG+TGG - chr7_2:69010049-69010068 None:intergenic 45.0%
! CACACTCTAGTTCCTGTCAA+GGG + chr7_2:69010112-69010131 Msa1072060:CDS 45.0%
ATGGAAGTCTCTGATCTTGC+AGG + chr7_2:69010178-69010197 Msa1072060:CDS 45.0%
TGGAAGTCTCTGATCTTGCA+GGG + chr7_2:69010179-69010198 Msa1072060:CDS 45.0%
! TTTTCTACTGCAGGTCAGTG+TGG + chr7_2:69010337-69010356 Msa1072060:intron 45.0%
TTTCTACTGCAGGTCAGTGT+GGG + chr7_2:69010338-69010357 Msa1072060:intron 45.0%
ATTGAATCCTGGAGAGAAGG+AGG - chr7_2:69010440-69010459 None:intergenic 45.0%
CCCTAAGCATATGATCGCTA+TGG - chr7_2:69010885-69010904 None:intergenic 45.0%
ATGATAAGTCCGCAAGTGCA+CGG + chr7_2:69011031-69011050 Msa1072060:three_prime_UTR 45.0%
! GTACTTGACATTGGTCTCTG+TGG - chr7_2:69011090-69011109 None:intergenic 45.0%
!!! TTTTTTTATTGAATATATTT+TGG - chr7_2:69007385-69007404 None:intergenic 5.0%
!! CTGATTGCTGGATTAGCAGC+TGG + chr7_2:69006490-69006509 Msa1072060:CDS 50.0%
CTTGTAGATGCCCTTCTGCT+GGG + chr7_2:69006542-69006561 Msa1072060:CDS 50.0%
GATATGCACTCCCAGCAGAA+GGG - chr7_2:69006555-69006574 None:intergenic 50.0%
TGATATGCACTCCCAGCAGA+AGG - chr7_2:69006556-69006575 None:intergenic 50.0%
! TGTTGCTTGGTTGATCGGCT+GGG + chr7_2:69007137-69007156 Msa1072060:CDS 50.0%
GTAGCTTCGTTGCTACCTCT+CGG - chr7_2:69007357-69007376 None:intergenic 50.0%
! TTTGGTTCACTGACCAGGGA+CGG - chr7_2:69008063-69008082 None:intergenic 50.0%
CCCTGGTCAGTGAACCAAAA+AGG + chr7_2:69008064-69008083 Msa1072060:intron 50.0%
TGCTGGCGTGCCAAAAAGAA+CGG - chr7_2:69008307-69008326 None:intergenic 50.0%
! GGACCCATGTGCAGCAATTT+TGG + chr7_2:69008351-69008370 Msa1072060:CDS 50.0%
ATGCAGAGCACAGTGGTACA+AGG + chr7_2:69008605-69008624 Msa1072060:intron 50.0%
GCGGGATATGAACTTCCTAC+TGG + chr7_2:69008707-69008726 Msa1072060:CDS 50.0%
AGCATCCCGTCAACTCCAAA+GGG - chr7_2:69008826-69008845 None:intergenic 50.0%
AAGCATCCCGTCAACTCCAA+AGG - chr7_2:69008827-69008846 None:intergenic 50.0%
CCTAGTGGCAAATCTCGTTG+AGG - chr7_2:69009267-69009286 None:intergenic 50.0%
CCTCAACGAGATTTGCCACT+AGG + chr7_2:69009264-69009283 Msa1072060:intron 50.0%
CGAGATTTGCCACTAGGCAT+TGG + chr7_2:69009270-69009289 Msa1072060:intron 50.0%
! AGTGAAGCACCAATGCCTAG+TGG - chr7_2:69009282-69009301 None:intergenic 50.0%
CTGGTCTCTGTTGTTGTGGT+TGG + chr7_2:69009327-69009346 Msa1072060:intron 50.0%
! TCCTCTGCATTTTCCGACCA+TGG + chr7_2:69009390-69009409 Msa1072060:intron 50.0%
! CCTCTGCATTTTCCGACCAT+GGG + chr7_2:69009391-69009410 Msa1072060:intron 50.0%
TTTCCGACCATGGGATGCAA+TGG + chr7_2:69009400-69009419 Msa1072060:intron 50.0%
TTCCGACCATGGGATGCAAT+GGG + chr7_2:69009401-69009420 Msa1072060:intron 50.0%
! TTGATGGCAATGGCAAGGGA+TGG + chr7_2:69010055-69010074 Msa1072060:CDS 50.0%
! GCACACTCTAGTTCCTGTCA+AGG + chr7_2:69010111-69010130 Msa1072060:CDS 50.0%
ATGCTAAGACTGCAGCAGCT+AGG - chr7_2:69010153-69010172 None:intergenic 50.0%
AGTCTCTGATCTTGCAGGGA+TGG + chr7_2:69010183-69010202 Msa1072060:CDS 50.0%
CAGCACAGATATTGCCACCA+TGG - chr7_2:69010381-69010400 None:intergenic 50.0%
! GGCACTGGGACTTTATTTGG+AGG - chr7_2:69010419-69010438 None:intergenic 50.0%
!! GGAGGCACTGGGACTTTATT+TGG - chr7_2:69010422-69010441 None:intergenic 50.0%
CCGATATTTCCGTGCACTTG+CGG - chr7_2:69011043-69011062 None:intergenic 50.0%
CCGCAAGTGCACGGAAATAT+CGG + chr7_2:69011040-69011059 Msa1072060:three_prime_UTR 50.0%
GCTTGTAGATGCCCTTCTGC+TGG + chr7_2:69006541-69006560 Msa1072060:CDS 55.0%
!! GTGTTGCTTGGTTGATCGGC+TGG + chr7_2:69007136-69007155 Msa1072060:intron 55.0%
CTTCGTTGCTACCTCTCGGT+TGG - chr7_2:69007353-69007372 None:intergenic 55.0%
TTGGCACGCCAGCATATTCC+TGG + chr7_2:69008313-69008332 Msa1072060:CDS 55.0%
TGGCACGCCAGCATATTCCT+GGG + chr7_2:69008314-69008333 Msa1072060:CDS 55.0%
GGGATTCAAGTCTGGATGGG+CGG + chr7_2:69008688-69008707 Msa1072060:CDS 55.0%
GGATTCAAGTCTGGATGGGC+GGG + chr7_2:69008689-69008708 Msa1072060:CDS 55.0%
AGTTGCCAGCACTGCTGAAG+AGG + chr7_2:69008891-69008910 Msa1072060:CDS 55.0%
!! GCAGAGGATATGGGGGTATC+AGG - chr7_2:69009378-69009397 None:intergenic 55.0%
CCCATGGTCGGAAAATGCAG+AGG - chr7_2:69009394-69009413 None:intergenic 55.0%
! AGCTCTCTGCTCAGCGTTGA+TGG + chr7_2:69009540-69009559 Msa1072060:intron 55.0%
!! GCTCTCTGCTCAGCGTTGAT+GGG + chr7_2:69009541-69009560 Msa1072060:intron 55.0%
!! TCTGCTCAGCGTTGATGGGT+GGG + chr7_2:69009545-69009564 Msa1072060:intron 55.0%
TTGGTTGATCGGCTGGGCCT+TGG + chr7_2:69007143-69007162 Msa1072060:CDS 60.0%
AGTAGTGCAGGCCAACCGAG+AGG + chr7_2:69007339-69007358 Msa1072060:intron 60.0%
ACCCACGTGTAGGGTCCTGT+GGG - chr7_2:69008040-69008059 None:intergenic 60.0%
GGAGTTGACGGGATGCTTGC+TGG + chr7_2:69008829-69008848 Msa1072060:CDS 60.0%
GGCCCATTGCATCCCATGGT+CGG - chr7_2:69009406-69009425 None:intergenic 60.0%
!! CTCTGCTCAGCGTTGATGGG+TGG + chr7_2:69009544-69009563 Msa1072060:intron 60.0%
GATGGGTGGGATACTTCCCC+AGG + chr7_2:69009558-69009577 Msa1072060:intron 60.0%
!! CCTGGAGAGAAGGAGGCACT+GGG - chr7_2:69010433-69010452 None:intergenic 60.0%
! TCCTGGAGAGAAGGAGGCAC+TGG - chr7_2:69010434-69010453 None:intergenic 60.0%
GATCGGCTGGGCCTTGGTAC+TGG + chr7_2:69007149-69007168 Msa1072060:CDS 65.0%
GTGTAGGGTCCTGTGGGCCT+GGG - chr7_2:69008034-69008053 None:intergenic 65.0%
GCCCACAGGACCCTACACGT+GGG + chr7_2:69008036-69008055 Msa1072060:intron 65.0%
GACCCACGTGTAGGGTCCTG+TGG - chr7_2:69008041-69008060 None:intergenic 65.0%
CAGGGACGGACCCACGTGTA+GGG - chr7_2:69008049-69008068 None:intergenic 65.0%
ACGCGGCCCATTGCATCCCA+TGG - chr7_2:69009410-69009429 None:intergenic 65.0%
CCCAGTGCCTCCTTCTCTCC+AGG + chr7_2:69010430-69010449 Msa1072060:CDS 65.0%
GGTGGCGCTGCTGTTGCTCG+TGG + chr7_2:69007183-69007202 Msa1072060:CDS 70.0%
TAGTGAGGGCCCAGGCCCAC+AGG + chr7_2:69008022-69008041 Msa1072060:intron 70.0%
CGTGTAGGGTCCTGTGGGCC+TGG - chr7_2:69008035-69008054 None:intergenic 70.0%
GGCCCACAGGACCCTACACG+TGG + chr7_2:69008035-69008054 Msa1072060:intron 70.0%
CCAGGGACGGACCCACGTGT+AGG - chr7_2:69008050-69008069 None:intergenic 70.0%
CCTACACGTGGGTCCGTCCC+TGG + chr7_2:69008047-69008066 Msa1072060:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 69005567 69011321 69005567 ID=Msa1072060;Name=Msa1072060
chr7_2 mRNA 69005567 69011321 69005567 ID=Msa1072060-mRNA-1;Parent=Msa1072060;Name=Msa1072060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=191|0.87|1|1|1|1|9|363|424
chr7_2 exon 69005567 69005884 69005567 ID=Msa1072060-mRNA-1:exon:15250;Parent=Msa1072060-mRNA-1
chr7_2 exon 69006401 69006602 69006401 ID=Msa1072060-mRNA-1:exon:15251;Parent=Msa1072060-mRNA-1
chr7_2 exon 69007137 69007221 69007137 ID=Msa1072060-mRNA-1:exon:15252;Parent=Msa1072060-mRNA-1
chr7_2 exon 69008274 69008414 69008274 ID=Msa1072060-mRNA-1:exon:15253;Parent=Msa1072060-mRNA-1
chr7_2 exon 69008611 69008729 69008611 ID=Msa1072060-mRNA-1:exon:15254;Parent=Msa1072060-mRNA-1
chr7_2 exon 69008816 69008912 69008816 ID=Msa1072060-mRNA-1:exon:15255;Parent=Msa1072060-mRNA-1
chr7_2 exon 69010046 69010204 69010046 ID=Msa1072060-mRNA-1:exon:15256;Parent=Msa1072060-mRNA-1
chr7_2 exon 69010350 69010587 69010350 ID=Msa1072060-mRNA-1:exon:15257;Parent=Msa1072060-mRNA-1
chr7_2 exon 69010852 69011321 69010852 ID=Msa1072060-mRNA-1:exon:15258;Parent=Msa1072060-mRNA-1
chr7_2 five_prime_UTR 69005567 69005757 69005567 ID=Msa1072060-mRNA-1:five_prime_utr;Parent=Msa1072060-mRNA-1
chr7_2 CDS 69005758 69005884 69005758 ID=Msa1072060-mRNA-1:cds;Parent=Msa1072060-mRNA-1
chr7_2 CDS 69006401 69006602 69006401 ID=Msa1072060-mRNA-1:cds;Parent=Msa1072060-mRNA-1
chr7_2 CDS 69007137 69007221 69007137 ID=Msa1072060-mRNA-1:cds;Parent=Msa1072060-mRNA-1
chr7_2 CDS 69008274 69008414 69008274 ID=Msa1072060-mRNA-1:cds;Parent=Msa1072060-mRNA-1
chr7_2 CDS 69008611 69008729 69008611 ID=Msa1072060-mRNA-1:cds;Parent=Msa1072060-mRNA-1
chr7_2 CDS 69008816 69008912 69008816 ID=Msa1072060-mRNA-1:cds;Parent=Msa1072060-mRNA-1
chr7_2 CDS 69010046 69010204 69010046 ID=Msa1072060-mRNA-1:cds;Parent=Msa1072060-mRNA-1
chr7_2 CDS 69010350 69010587 69010350 ID=Msa1072060-mRNA-1:cds;Parent=Msa1072060-mRNA-1
chr7_2 CDS 69010852 69010958 69010852 ID=Msa1072060-mRNA-1:cds;Parent=Msa1072060-mRNA-1
chr7_2 three_prime_UTR 69010959 69011321 69010959 ID=Msa1072060-mRNA-1:three_prime_utr;Parent=Msa1072060-mRNA-1
Gene Sequence

>Msa1072060

ATGGGTGGTGTTTCACAAAAGGGTTCATGGAGATTTTTCACTAGAAGGAAGCAGGTTGATTCACCAAGTCAAAACACTAAGCCTCTTCTTGCTAAAGCGTTATCTGTTTCTCATCTCATTGCAATTGGTGTTGGTTCAACAATTGGTGCTGGAGTGTATGTTTTGGTTGGAACAGTAGCTAGAGAGCATTCTGGACCATCTTTGGCTATTTCTTTTCTGATTGCTGGATTAGCAGCTGGTCTTTCTGCTTTTTGTTATGCAGAGTTGGCTTGTAGATGCCCTTCTGCTGGGAGTGCATATCACTATTCATACATATGTCTTGGAGAAGGTGTTGCTTGGTTGATCGGCTGGGCCTTGGTACTGGAATATACGATTGGTGGCGCTGCTGTTGCTCGTGGCATAACTCCTAATCTTGCTCCACTTTTTGGTGGTCTAGACAATCTACCGTTCTTTTTGGCACGCCAGCATATTCCTGGGATTGATATTGTCGTGGACCCATGTGCAGCAATTTTGGTATTACTTGTTACAGGACTCTTATGTTTGGGGATCAAGGAGAGCACAGTGGTACAAGGCATAGTGACATCAGTGAATGTATGTGCATTGCTTTTTGTGATTGTTGCTGGTGGTTACATGGGATTCAAGTCTGGATGGGCGGGATATGAACTTCCTACTGGATATTTTCCCTTTGGAGTTGACGGGATGCTTGCTGGTTCTGCGACAGTCTTTTTTGCATATGTAGGTTTTGATGCAGTTGCCAGCACTGCTGAAGAGCCACGAATTTTGATGGCAATGGCAAGGGATGGACTACTGCCACCATTTTTTTGTGACATAAATAAGCACACTCTAGTTCCTGTCAAGGGCACAATAATTACTGGCCTAGCTGCTGCAGTCTTAGCATTTTCTATGGAAGTCTCTGATCTTGCAGGGATGGTCAGTGTGGGAACTCTTTTAGCATTCACCATGGTGGCAATATCTGTGCTGATCCTAAGATATATTCCTCCAAATAAAGTCCCAGTGCCTCCTTCTCTCCAGGATTCAATTGTAGAAATCAAAGTCGAATATGAAGAGGAAAATATCGGTACTTCTGAAGACACAAAACCTTTAGATGTTACGCGAGATTGCTCCATTGATTACCCTCTTATTTCTAAACACCGTTCCAAAGACAACTATCTAAATAGAAGAAGAGTTGTTGGGTGGACCATAGCGATCATATGCTTAGGGGCGTTTGTCCTCACATATGCAGCTTCATGTTTAACTTTCCTTAGGTTAGTCTAA

Protein sequence

>Msa1072060

MGGVSQKGSWRFFTRRKQVDSPSQNTKPLLAKALSVSHLIAIGVGSTIGAGVYVLVGTVAREHSGPSLAISFLIAGLAAGLSAFCYAELACRCPSAGSAYHYSYICLGEGVAWLIGWALVLEYTIGGAAVARGITPNLAPLFGGLDNLPFFLARQHIPGIDIVVDPCAAILVLLVTGLLCLGIKESTVVQGIVTSVNVCALLFVIVAGGYMGFKSGWAGYELPTGYFPFGVDGMLAGSATVFFAYVGFDAVASTAEEPRILMAMARDGLLPPFFCDINKHTLVPVKGTIITGLAAAVLAFSMEVSDLAGMVSVGTLLAFTMVAISVLILRYIPPNKVPVPPSLQDSIVEIKVEYEEENIGTSEDTKPLDVTRDCSIDYPLISKHRSKDNYLNRRRVVGWTIAIICLGAFVLTYAASCLTFLRLV*