Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072240 | XP_003624740.1 | 96.226 | 265 | 4 | 2 | 1 | 259 | 1 | 265 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072240 | sp|Q6X7J3|WOX11_ARATH | 47.778 | 270 | 105 | 8 | 12 | 259 | 8 | 263 | 3.36e-59 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072240 | B7FL74 | 96.226 | 265 | 4 | 2 | 1 | 259 | 1 | 265 | 0.0 | 519 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1072240 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1072240 | Msa1118240 | 0.903248 | 4.222113e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072240 | MtrunA17_Chr7g0254251 | 96.226 | 265 | 4 | 2 | 1 | 259 | 1 | 265 | 0.0 | 519 |
| Msa1072240 | MtrunA17_Chr6g0460691 | 46.809 | 282 | 96 | 7 | 20 | 259 | 24 | 293 | 8.80e-59 | 188 |
| Msa1072240 | MtrunA17_Chr7g0223471 | 66.197 | 71 | 24 | 0 | 18 | 88 | 37 | 107 | 3.10e-28 | 111 |
| Msa1072240 | MtrunA17_Chr2g0283141 | 63.158 | 76 | 27 | 1 | 13 | 87 | 39 | 114 | 1.30e-26 | 107 |
| Msa1072240 | MtrunA17_Chr2g0283141 | 43.077 | 65 | 37 | 0 | 195 | 259 | 341 | 405 | 9.71e-13 | 67.4 |
| Msa1072240 | MtrunA17_Chr4g0043891 | 39.024 | 82 | 46 | 1 | 27 | 104 | 7 | 88 | 1.74e-15 | 73.9 |
| Msa1072240 | MtrunA17_Chr8g0392991 | 44.595 | 74 | 38 | 1 | 25 | 95 | 93 | 166 | 5.10e-14 | 70.9 |
| Msa1072240 | MtrunA17_Chr4g0031341 | 43.077 | 65 | 37 | 0 | 28 | 92 | 25 | 89 | 1.30e-13 | 68.6 |
| Msa1072240 | MtrunA17_Chr1g0212511 | 47.692 | 65 | 33 | 1 | 26 | 90 | 83 | 146 | 3.81e-13 | 67.4 |
| Msa1072240 | MtrunA17_Chr3g0144021 | 44.444 | 63 | 35 | 0 | 26 | 88 | 80 | 142 | 3.26e-12 | 64.3 |
| Msa1072240 | MtrunA17_Chr5g0436661 | 31.579 | 95 | 64 | 1 | 5 | 99 | 10 | 103 | 4.34e-12 | 63.2 |
| Msa1072240 | MtrunA17_Chr7g0238431 | 42.188 | 64 | 37 | 0 | 24 | 87 | 4 | 67 | 4.51e-12 | 63.5 |
| Msa1072240 | MtrunA17_Chr1g0153171 | 38.889 | 90 | 52 | 1 | 3 | 92 | 68 | 154 | 4.67e-12 | 63.9 |
| Msa1072240 | MtrunA17_Chr5g0405351 | 41.270 | 63 | 36 | 1 | 27 | 88 | 29 | 91 | 6.98e-12 | 64.3 |
| Msa1072240 | MtrunA17_Chr7g0222981 | 42.188 | 64 | 37 | 0 | 25 | 88 | 65 | 128 | 8.56e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072240 | AT3G03660.1 | 47.778 | 270 | 105 | 8 | 12 | 259 | 8 | 263 | 3.41e-60 | 191 |
| Msa1072240 | AT3G03660.4 | 47.778 | 270 | 105 | 8 | 12 | 259 | 8 | 263 | 1.98e-59 | 190 |
| Msa1072240 | AT3G03660.2 | 45.151 | 299 | 99 | 9 | 12 | 259 | 8 | 292 | 1.09e-57 | 186 |
| Msa1072240 | AT3G03660.3 | 45.151 | 299 | 99 | 9 | 12 | 259 | 8 | 292 | 7.83e-57 | 184 |
| Msa1072240 | AT5G17810.1 | 45.076 | 264 | 110 | 8 | 19 | 259 | 12 | 263 | 8.53e-53 | 172 |
| Msa1072240 | AT5G17810.2 | 45.076 | 264 | 110 | 8 | 19 | 259 | 12 | 263 | 8.53e-53 | 172 |
| Msa1072240 | AT5G17810.3 | 44.528 | 265 | 109 | 8 | 19 | 259 | 12 | 262 | 1.82e-52 | 171 |
| Msa1072240 | AT2G33880.1 | 63.235 | 68 | 25 | 0 | 20 | 87 | 47 | 114 | 2.77e-25 | 103 |
| Msa1072240 | AT2G33880.1 | 43.636 | 55 | 31 | 0 | 205 | 259 | 323 | 377 | 9.87e-11 | 61.6 |
| Msa1072240 | AT2G33880.2 | 63.235 | 68 | 25 | 0 | 20 | 87 | 47 | 114 | 3.54e-25 | 102 |
| Msa1072240 | AT5G45980.1 | 55.263 | 76 | 34 | 0 | 12 | 87 | 39 | 114 | 4.73e-24 | 99.0 |
| Msa1072240 | AT1G20700.2 | 35.714 | 84 | 54 | 0 | 25 | 108 | 30 | 113 | 2.16e-13 | 66.2 |
| Msa1072240 | AT1G46480.2 | 40.230 | 87 | 43 | 2 | 4 | 88 | 71 | 150 | 3.90e-13 | 66.6 |
| Msa1072240 | AT5G59340.1 | 40.000 | 65 | 39 | 0 | 27 | 91 | 13 | 77 | 5.84e-13 | 67.4 |
| Msa1072240 | AT1G20700.1 | 37.975 | 79 | 49 | 0 | 25 | 103 | 92 | 170 | 7.12e-13 | 66.2 |
| Msa1072240 | AT1G20700.3 | 37.975 | 79 | 49 | 0 | 25 | 103 | 92 | 170 | 7.26e-13 | 66.2 |
| Msa1072240 | AT4G35550.1 | 43.750 | 64 | 36 | 0 | 25 | 88 | 96 | 159 | 8.10e-13 | 67.0 |
| Msa1072240 | AT3G18010.1 | 38.806 | 67 | 41 | 0 | 25 | 91 | 73 | 139 | 2.02e-12 | 66.6 |
| Msa1072240 | AT1G46480.1 | 40.230 | 87 | 43 | 2 | 4 | 88 | 71 | 150 | 3.08e-12 | 65.1 |
| Msa1072240 | AT2G28610.1 | 44.615 | 65 | 35 | 1 | 24 | 87 | 3 | 67 | 5.70e-12 | 64.3 |
| Msa1072240 | AT2G17950.1 | 41.176 | 68 | 39 | 1 | 27 | 93 | 37 | 104 | 1.48e-11 | 63.5 |
| Msa1072240 | AT3G11260.1 | 39.683 | 63 | 38 | 0 | 28 | 90 | 24 | 86 | 4.15e-11 | 60.8 |
| Msa1072240 | AT5G05770.1 | 37.313 | 67 | 42 | 0 | 28 | 94 | 29 | 95 | 8.05e-11 | 58.5 |
Find 65 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAGTGATAGTTGAAATT+AGG | 0.234117 | 7_2:-69238052 | None:intergenic |
| TCTTGTTTAAATGATTCTTC+TGG | 0.294809 | 7_2:+69237890 | Msa1072240:CDS |
| TGTTGGGTTGGAGTGTTGTT+GGG | 0.318471 | 7_2:-69237509 | None:intergenic |
| AGAAAACTTCTTGAGAAATT+CGG | 0.326558 | 7_2:+69237656 | Msa1072240:CDS |
| GTTGGGTTGGAGTGTTGTTG+GGG | 0.328214 | 7_2:-69237508 | None:intergenic |
| ATGAGAATTTGTTCTGGTTT+TGG | 0.333304 | 7_2:-69237572 | None:intergenic |
| GAGATCTAGACCGGCGGTTT+TGG | 0.333606 | 7_2:-69237712 | None:intergenic |
| CAAGTGTGGCCTGCTGCATC+TGG | 0.348372 | 7_2:-69237748 | None:intergenic |
| AAGATGCCATGTTCATTTGT+AGG | 0.357603 | 7_2:-69239937 | None:intergenic |
| ATGTTGGGTTGGAGTGTTGT+TGG | 0.365481 | 7_2:-69237510 | None:intergenic |
| ACATGGTGAAAGCTACTTTC+TGG | 0.379822 | 7_2:+69239975 | Msa1072240:CDS |
| GGGTTGGAGTGTTGTTGGGG+GGG | 0.381125 | 7_2:-69237505 | None:intergenic |
| CCATGTTCATTTGTAGGAAC+TGG | 0.385723 | 7_2:-69239931 | None:intergenic |
| TTGGGTTGGAGTGTTGTTGG+GGG | 0.394607 | 7_2:-69237507 | None:intergenic |
| CTAGACATCAAAACAGTGTT+TGG | 0.400410 | 7_2:+69239874 | Msa1072240:CDS |
| TCATGTGGTGGTGTTCTTAG+TGG | 0.413935 | 7_2:+69237926 | Msa1072240:CDS |
| CCTGCTGCATCTGGCGTTGT+CGG | 0.413984 | 7_2:-69237739 | None:intergenic |
| TCAAGTATGAGAATTTGTTC+TGG | 0.415342 | 7_2:-69237578 | None:intergenic |
| GGAGGTGCTAGTACTGTAAC+AGG | 0.420294 | 7_2:+69239799 | Msa1072240:CDS |
| CCGACAACGCCAGATGCAGC+AGG | 0.426272 | 7_2:+69237739 | Msa1072240:CDS |
| GGTGTCCACCTTGACCTAAC+CGG | 0.426373 | 7_2:-69237551 | None:intergenic |
| TGGGTTGGAGTGTTGTTGGG+GGG | 0.427678 | 7_2:-69237506 | None:intergenic |
| TGGCAACAGTGTTTATCAAT+GGG | 0.442136 | 7_2:+69239824 | Msa1072240:CDS |
| AAGTGCAATTCCTTGTGATA+TGG | 0.444028 | 7_2:+69237829 | Msa1072240:CDS |
| TTGGCAACAGTGTTTATCAA+TGG | 0.459800 | 7_2:+69239823 | Msa1072240:CDS |
| CCGAGAAAACTGAACCGGTT+AGG | 0.473633 | 7_2:+69237537 | Msa1072240:CDS |
| TAGTTGAAATTAGGAGAAAG+AGG | 0.501074 | 7_2:-69238043 | None:intergenic |
| CACCATGCCACTGTTGAAGA+TGG | 0.505097 | 7_2:-69237603 | None:intergenic |
| GGTTCTTCCTCTTCATCATG+TGG | 0.507710 | 7_2:+69237911 | Msa1072240:CDS |
| GTGATGTTAGTTCATTCCTC+TGG | 0.509716 | 7_2:+69239904 | Msa1072240:CDS |
| CCTAATTTCAACTATCACTC+TGG | 0.510567 | 7_2:+69238052 | Msa1072240:CDS |
| TTCTCGGAACCATGTTGGGT+TGG | 0.525597 | 7_2:-69237521 | None:intergenic |
| TGGTTCCGAGAAAACTGAAC+CGG | 0.529515 | 7_2:+69237532 | Msa1072240:CDS |
| GTGATGCTAACGTCTTCTAC+TGG | 0.530664 | 7_2:+69237687 | Msa1072240:CDS |
| TGCTAGTACTGTAACAGGAT+TGG | 0.531847 | 7_2:+69239804 | Msa1072240:CDS |
| AGTGGTCAACAAGGCATGGA+TGG | 0.541797 | 7_2:+69237944 | Msa1072240:CDS |
| TGGTATTATTAAGGATATGG+AGG | 0.551703 | 7_2:+69239781 | Msa1072240:intron |
| TGAAATTAGGAGAAAGAGGA+GGG | 0.553578 | 7_2:-69238039 | None:intergenic |
| CTTGAGAAATTCGGCAACGT+CGG | 0.555714 | 7_2:+69237665 | Msa1072240:CDS |
| ATTTCTTTGCTGATCAAGTG+TGG | 0.555910 | 7_2:-69237762 | None:intergenic |
| AACACCACCACATGATGAAG+AGG | 0.558375 | 7_2:-69237918 | None:intergenic |
| TTGAAATTAGGAGAAAGAGG+AGG | 0.567678 | 7_2:-69238040 | None:intergenic |
| GCTGCATCTGGCGTTGTCGG+CGG | 0.572272 | 7_2:-69237736 | None:intergenic |
| TCTTCCTCTTCATCATGTGG+TGG | 0.579085 | 7_2:+69237914 | Msa1072240:CDS |
| AGAAGAATCATTTAAACAAG+AGG | 0.579493 | 7_2:-69237888 | None:intergenic |
| ATTGCAACAGAAATTCAAGC+AGG | 0.580804 | 7_2:+69239847 | Msa1072240:CDS |
| TGATCAGCAAAGAAATCAGA+TGG | 0.591537 | 7_2:+69237769 | Msa1072240:CDS |
| TCTTAGTGGTCAACAAGGCA+TGG | 0.594370 | 7_2:+69237940 | Msa1072240:CDS |
| CCAGTTCCTACAAATGAACA+TGG | 0.595290 | 7_2:+69239931 | Msa1072240:CDS |
| AGAATCATTTAAACAAGAGG+AGG | 0.602089 | 7_2:-69237885 | None:intergenic |
| AGAGGAGGGCACAAAAGTGA+TGG | 0.605244 | 7_2:-69238025 | None:intergenic |
| AAACTGAACCGGTTAGGTCA+AGG | 0.615654 | 7_2:+69237543 | Msa1072240:CDS |
| AACAACACTCCAACCCAACA+TGG | 0.616195 | 7_2:+69237512 | Msa1072240:CDS |
| GTCCATCTTCAACAGTGGCA+TGG | 0.623516 | 7_2:+69237601 | Msa1072240:CDS |
| TCTACTGGTTCCAAAACCGC+CGG | 0.624539 | 7_2:+69237702 | Msa1072240:CDS |
| CTTGAGTCCATCTTCAACAG+TGG | 0.626929 | 7_2:+69237596 | Msa1072240:CDS |
| GGTTCAAACCAACCCAACCA+TGG | 0.628192 | 7_2:+69237850 | Msa1072240:CDS |
| CCTCAGCAAGTTGTTAACGA+TGG | 0.634528 | 7_2:+69237803 | Msa1072240:CDS |
| CCATCGTTAACAACTTGCTG+AGG | 0.647740 | 7_2:-69237803 | None:intergenic |
| TTGCAACAGAAATTCAAGCA+GGG | 0.656089 | 7_2:+69239848 | Msa1072240:CDS |
| TTGGTTTGAACCATATCACA+AGG | 0.660599 | 7_2:-69237839 | None:intergenic |
| GGTGTTCTTAGTGGTCAACA+AGG | 0.660710 | 7_2:+69237935 | Msa1072240:CDS |
| TGTAGGAACTGGCACACCAG+AGG | 0.661943 | 7_2:-69239920 | None:intergenic |
| TTGATTCAGAGCTTGCAACA+TGG | 0.664561 | 7_2:+69239958 | Msa1072240:CDS |
| CTGAACCGGTTAGGTCAAGG+TGG | 0.696695 | 7_2:+69237546 | Msa1072240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTATTTTAAAATCCA+TGG | + | chr7_2:69238123-69238142 | Msa1072240:intron | 10.0% |
| !! | AAATAATACAAAATTATTTG+TGG | - | chr7_2:69238205-69238224 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACATAATCTA+GGG | - | chr7_2:69239017-69239036 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAACATAATCT+AGG | - | chr7_2:69239018-69239037 | None:intergenic | 10.0% |
| !!! | GAATAATTTTATATAAATGT+TGG | - | chr7_2:69239112-69239131 | None:intergenic | 10.0% |
| !! | TGTTCTAATAAATAAAAAAT+TGG | + | chr7_2:69239740-69239759 | Msa1072240:intron | 10.0% |
| !! | GAATAATACAAAATTATTTG+TGG | - | chr7_2:69238240-69238259 | None:intergenic | 15.0% |
| !! | AAATTTATCTAAATTGGATT+AGG | - | chr7_2:69238342-69238361 | None:intergenic | 15.0% |
| !!! | AGTTTGAAATTTATCTAAAT+TGG | - | chr7_2:69238348-69238367 | None:intergenic | 15.0% |
| !!! | AAATTTGTTTATTATATGCA+TGG | + | chr7_2:69238374-69238393 | Msa1072240:intron | 15.0% |
| !! | AAAAAAAATAAGATTAGAGA+AGG | + | chr7_2:69238445-69238464 | Msa1072240:intron | 15.0% |
| !! | ATCATAATTAACAATTTCAT+TGG | + | chr7_2:69238486-69238505 | Msa1072240:intron | 15.0% |
| !! | TTAAAAAAAGTTCATGTTTA+TGG | + | chr7_2:69238773-69238792 | Msa1072240:intron | 15.0% |
| !!! | GAACTTGTAATTTTTTTTAA+CGG | - | chr7_2:69239142-69239161 | None:intergenic | 15.0% |
| !!! | TTGTAAATTTTCAATTAAGT+TGG | - | chr7_2:69239218-69239237 | None:intergenic | 15.0% |
| !!! | TATATAGCAGATTTTATTTT+GGG | - | chr7_2:69239289-69239308 | None:intergenic | 15.0% |
| !!! | ATATATAGCAGATTTTATTT+TGG | - | chr7_2:69239290-69239309 | None:intergenic | 15.0% |
| !! | AACAATATTTGGTATTATTA+AGG | + | chr7_2:69239772-69239791 | Msa1072240:intron | 15.0% |
| !!! | TTTTGATAGTTTCTTCTTTT+GGG | - | chr7_2:69237634-69237653 | None:intergenic | 20.0% |
| !!! | ATTTTGATAGTTTCTTCTTT+TGG | - | chr7_2:69237635-69237654 | None:intergenic | 20.0% |
| !! | AAAAAAGTGAGAGAATAAAA+AGG | - | chr7_2:69238945-69238964 | None:intergenic | 20.0% |
| !!! | TAAATTTTCAATTAAGTTGG+TGG | - | chr7_2:69239215-69239234 | None:intergenic | 20.0% |
| !!! | ATATAGCAGATTTTATTTTG+GGG | - | chr7_2:69239288-69239307 | None:intergenic | 20.0% |
| !! | CAAATTTGATTAACAATTCT+TGG | - | chr7_2:69239407-69239426 | None:intergenic | 20.0% |
| !! | CAAGAATTGTTAATCAAATT+TGG | + | chr7_2:69239405-69239424 | Msa1072240:intron | 20.0% |
| !!! | ATCACTTTAACTTAATTGTT+TGG | + | chr7_2:69239465-69239484 | Msa1072240:intron | 20.0% |
| !! | TGTACAGATATGAAAATTAT+AGG | - | chr7_2:69239515-69239534 | None:intergenic | 20.0% |
| !! | ATTTGGTATTATTAAGGATA+TGG | + | chr7_2:69239778-69239797 | Msa1072240:intron | 20.0% |
| !!! | TTTGATAGTTTCTTCTTTTG+GGG | - | chr7_2:69237633-69237652 | None:intergenic | 25.0% |
| ! | AGAAAACTTCTTGAGAAATT+CGG | + | chr7_2:69237656-69237675 | Msa1072240:CDS | 25.0% |
| ! | AGAAGAATCATTTAAACAAG+AGG | - | chr7_2:69237891-69237910 | None:intergenic | 25.0% |
| !! | TCTTGTTTAAATGATTCTTC+TGG | + | chr7_2:69237890-69237909 | Msa1072240:CDS | 25.0% |
| !! | TTTTCAGTTTCTTCTCAAAT+GGG | + | chr7_2:69237971-69237990 | Msa1072240:intron | 25.0% |
| !!! | CTTGTGATTTTAGTATGAAT+TGG | - | chr7_2:69238155-69238174 | None:intergenic | 25.0% |
| ! | CCATTCACATATGTAAAATT+TGG | - | chr7_2:69238567-69238586 | None:intergenic | 25.0% |
| !! | CCAAATTTTACATATGTGAA+TGG | + | chr7_2:69238564-69238583 | Msa1072240:intron | 25.0% |
| !! | AACATCAGATTTGGAATTTA+TGG | - | chr7_2:69238657-69238676 | None:intergenic | 25.0% |
| ! | AAAATCTGTAACATCAGATT+TGG | - | chr7_2:69238666-69238685 | None:intergenic | 25.0% |
| ! | TGCATATTTGAATTCATAGT+TGG | + | chr7_2:69238706-69238725 | Msa1072240:intron | 25.0% |
| !!! | CTTTTTTTAAACTAAGTGCA+TGG | - | chr7_2:69238763-69238782 | None:intergenic | 25.0% |
| ! | TGTTTATGGAATGATTGATT+AGG | + | chr7_2:69238787-69238806 | Msa1072240:intron | 25.0% |
| !! | AAAAAACATAATCTAGGGTT+TGG | - | chr7_2:69239012-69239031 | None:intergenic | 25.0% |
| !!! | ATGAGAATTTGTTCTGGTTT+TGG | - | chr7_2:69237575-69237594 | None:intergenic | 30.0% |
| ! | TCAAGTATGAGAATTTGTTC+TGG | - | chr7_2:69237581-69237600 | None:intergenic | 30.0% |
| !! | TTGATAGTTTCTTCTTTTGG+GGG | - | chr7_2:69237632-69237651 | None:intergenic | 30.0% |
| AGAATCATTTAAACAAGAGG+AGG | - | chr7_2:69237888-69237907 | None:intergenic | 30.0% | |
| ! | GTTTTCAGTTTCTTCTCAAA+TGG | + | chr7_2:69237970-69237989 | Msa1072240:intron | 30.0% |
| TAGTTGAAATTAGGAGAAAG+AGG | - | chr7_2:69238046-69238065 | None:intergenic | 30.0% | |
| ! | AGGCTTTGATGTTAATATGT+TGG | - | chr7_2:69238322-69238341 | None:intergenic | 30.0% |
| ! | ATTAGAGAAGGCATATACAA+AGG | + | chr7_2:69238457-69238476 | Msa1072240:intron | 30.0% |
| AAGTGAGAGAATAAAAAGGA+AGG | - | chr7_2:69238941-69238960 | None:intergenic | 30.0% | |
| AAATCATCTCATCTGATTGT+TGG | + | chr7_2:69239044-69239063 | Msa1072240:intron | 30.0% | |
| TGGTGAATAATTTCCAAAGA+GGG | - | chr7_2:69239072-69239091 | None:intergenic | 30.0% | |
| ATGGTGAATAATTTCCAAAG+AGG | - | chr7_2:69239073-69239092 | None:intergenic | 30.0% | |
| TGGTAAAAACTAGTGATGTA+TGG | - | chr7_2:69239092-69239111 | None:intergenic | 30.0% | |
| AGTTAAAAAAAATGTCGTCG+CGG | - | chr7_2:69239318-69239337 | None:intergenic | 30.0% | |
| AATTGTTTGGTTATCTACGA+TGG | + | chr7_2:69239478-69239497 | Msa1072240:intron | 30.0% | |
| ATTGTTTGGTTATCTACGAT+GGG | + | chr7_2:69239479-69239498 | Msa1072240:intron | 30.0% | |
| ! | TTGACTTCTTAATGATAACG+TGG | + | chr7_2:69239536-69239555 | Msa1072240:intron | 30.0% |
| GTGATTGTGATATGAAATTC+AGG | + | chr7_2:69239623-69239642 | Msa1072240:intron | 30.0% | |
| TTGTATTTGACCAATGTGTA+TGG | + | chr7_2:69239714-69239733 | Msa1072240:intron | 30.0% | |
| ! | GGTCAAGTTCTAACAATATT+TGG | + | chr7_2:69239761-69239780 | Msa1072240:intron | 30.0% |
| TGGTATTATTAAGGATATGG+AGG | + | chr7_2:69239781-69239800 | Msa1072240:intron | 30.0% | |
| ATTTCTTTGCTGATCAAGTG+TGG | - | chr7_2:69237765-69237784 | None:intergenic | 35.0% | |
| TGATCAGCAAAGAAATCAGA+TGG | + | chr7_2:69237769-69237788 | Msa1072240:CDS | 35.0% | |
| AAGTGCAATTCCTTGTGATA+TGG | + | chr7_2:69237829-69237848 | Msa1072240:CDS | 35.0% | |
| ! | TTGGTTTGAACCATATCACA+AGG | - | chr7_2:69237842-69237861 | None:intergenic | 35.0% |
| !! | TCTTCTCAAATGGGTTTTCT+TGG | + | chr7_2:69237980-69237999 | Msa1072240:CDS | 35.0% |
| TGAAATTAGGAGAAAGAGGA+GGG | - | chr7_2:69238042-69238061 | None:intergenic | 35.0% | |
| TTGAAATTAGGAGAAAGAGG+AGG | - | chr7_2:69238043-69238062 | None:intergenic | 35.0% | |
| CCAGAGTGATAGTTGAAATT+AGG | - | chr7_2:69238055-69238074 | None:intergenic | 35.0% | |
| CCTAATTTCAACTATCACTC+TGG | + | chr7_2:69238052-69238071 | Msa1072240:CDS | 35.0% | |
| TCAACTATCACTCTGGTAAT+TGG | + | chr7_2:69238059-69238078 | Msa1072240:intron | 35.0% | |
| TCGTAGTTGACACATATGAT+TGG | - | chr7_2:69238595-69238614 | None:intergenic | 35.0% | |
| GGAATGATTGATTAGGTTAC+AGG | + | chr7_2:69238794-69238813 | Msa1072240:intron | 35.0% | |
| TGATTGATTAGGTTACAGGA+TGG | + | chr7_2:69238798-69238817 | Msa1072240:intron | 35.0% | |
| GATTGATTAGGTTACAGGAT+GGG | + | chr7_2:69238799-69238818 | Msa1072240:intron | 35.0% | |
| TTCATGCAACAATTCAAACG+CGG | - | chr7_2:69238865-69238884 | None:intergenic | 35.0% | |
| TGCATGAAAGTTGTTCTTTC+CGG | + | chr7_2:69238877-69238896 | Msa1072240:intron | 35.0% | |
| ! | AAGTAGCGTTCATGTTTTTC+CGG | - | chr7_2:69238899-69238918 | None:intergenic | 35.0% |
| ! | AAAACATGAACGCTACTTTC+CGG | + | chr7_2:69238901-69238920 | Msa1072240:intron | 35.0% |
| !!! | GGATCTATTGATTTTGCACA+AGG | - | chr7_2:69239194-69239213 | None:intergenic | 35.0% |
| ! | TTGGGGTAAAGTCTGAAATT+TGG | - | chr7_2:69239271-69239290 | None:intergenic | 35.0% |
| !! | TTTTCAAGCACGAACATTTC+AGG | - | chr7_2:69239436-69239455 | None:intergenic | 35.0% |
| TAGAACATCACCATACACAT+TGG | - | chr7_2:69239727-69239746 | None:intergenic | 35.0% | |
| TTGGCAACAGTGTTTATCAA+TGG | + | chr7_2:69239823-69239842 | Msa1072240:CDS | 35.0% | |
| TGGCAACAGTGTTTATCAAT+GGG | + | chr7_2:69239824-69239843 | Msa1072240:CDS | 35.0% | |
| ATTGCAACAGAAATTCAAGC+AGG | + | chr7_2:69239847-69239866 | Msa1072240:CDS | 35.0% | |
| TTGCAACAGAAATTCAAGCA+GGG | + | chr7_2:69239848-69239867 | Msa1072240:CDS | 35.0% | |
| CTAGACATCAAAACAGTGTT+TGG | + | chr7_2:69239874-69239893 | Msa1072240:CDS | 35.0% | |
| AAGATGCCATGTTCATTTGT+AGG | - | chr7_2:69239940-69239959 | None:intergenic | 35.0% | |
| ! | AGTTTTCTCGGAACCATGTT+GGG | - | chr7_2:69237528-69237547 | None:intergenic | 40.0% |
| AACCACCAAAAACCATGGTT+GGG | - | chr7_2:69237865-69237884 | None:intergenic | 40.0% | |
| GTATGAATTGGATTGCTCCA+TGG | - | chr7_2:69238143-69238162 | None:intergenic | 40.0% | |
| AGGATGGGTACAGAATAAAG+TGG | + | chr7_2:69238814-69238833 | Msa1072240:intron | 40.0% | |
| GGATGGGTACAGAATAAAGT+GGG | + | chr7_2:69238815-69238834 | Msa1072240:intron | 40.0% | |
| !! | GTTATCTACGATGGGTTGAA+AGG | + | chr7_2:69239487-69239506 | Msa1072240:intron | 40.0% |
| TGCTAGTACTGTAACAGGAT+TGG | + | chr7_2:69239804-69239823 | Msa1072240:CDS | 40.0% | |
| GTGATGTTAGTTCATTCCTC+TGG | + | chr7_2:69239904-69239923 | Msa1072240:CDS | 40.0% | |
| CCATGTTCATTTGTAGGAAC+TGG | - | chr7_2:69239934-69239953 | None:intergenic | 40.0% | |
| CCAGTTCCTACAAATGAACA+TGG | + | chr7_2:69239931-69239950 | Msa1072240:CDS | 40.0% | |
| TTGATTCAGAGCTTGCAACA+TGG | + | chr7_2:69239958-69239977 | Msa1072240:CDS | 40.0% | |
| !! | TGTTGGGTTGGAGTGTTGTT+GGG | - | chr7_2:69237512-69237531 | None:intergenic | 45.0% |
| !! | ATGTTGGGTTGGAGTGTTGT+TGG | - | chr7_2:69237513-69237532 | None:intergenic | 45.0% |
| AACAACACTCCAACCCAACA+TGG | + | chr7_2:69237512-69237531 | Msa1072240:CDS | 45.0% | |
| ! | CAGTTTTCTCGGAACCATGT+TGG | - | chr7_2:69237529-69237548 | None:intergenic | 45.0% |
| TGGTTCCGAGAAAACTGAAC+CGG | + | chr7_2:69237532-69237551 | Msa1072240:CDS | 45.0% | |
| !! | CCTAACCGGTTCAGTTTTCT+CGG | - | chr7_2:69237540-69237559 | None:intergenic | 45.0% |
| AAACTGAACCGGTTAGGTCA+AGG | + | chr7_2:69237543-69237562 | Msa1072240:CDS | 45.0% | |
| CTTGAGTCCATCTTCAACAG+TGG | + | chr7_2:69237596-69237615 | Msa1072240:CDS | 45.0% | |
| CTTGAGAAATTCGGCAACGT+CGG | + | chr7_2:69237665-69237684 | Msa1072240:CDS | 45.0% | |
| GTGATGCTAACGTCTTCTAC+TGG | + | chr7_2:69237687-69237706 | Msa1072240:CDS | 45.0% | |
| !! | CCATCGTTAACAACTTGCTG+AGG | - | chr7_2:69237806-69237825 | None:intergenic | 45.0% |
| CCTCAGCAAGTTGTTAACGA+TGG | + | chr7_2:69237803-69237822 | Msa1072240:CDS | 45.0% | |
| ! | ACCAACCCAACCATGGTTTT+TGG | + | chr7_2:69237857-69237876 | Msa1072240:CDS | 45.0% |
| ACCAAAAACCATGGTTGGGT+TGG | - | chr7_2:69237861-69237880 | None:intergenic | 45.0% | |
| !! | AACCCAACCATGGTTTTTGG+TGG | + | chr7_2:69237860-69237879 | Msa1072240:CDS | 45.0% |
| GAACCACCAAAAACCATGGT+TGG | - | chr7_2:69237866-69237885 | None:intergenic | 45.0% | |
| GGTTCTTCCTCTTCATCATG+TGG | + | chr7_2:69237911-69237930 | Msa1072240:CDS | 45.0% | |
| TCTTCCTCTTCATCATGTGG+TGG | + | chr7_2:69237914-69237933 | Msa1072240:CDS | 45.0% | |
| AACACCACCACATGATGAAG+AGG | - | chr7_2:69237921-69237940 | None:intergenic | 45.0% | |
| ! | TCATGTGGTGGTGTTCTTAG+TGG | + | chr7_2:69237926-69237945 | Msa1072240:CDS | 45.0% |
| GGTGTTCTTAGTGGTCAACA+AGG | + | chr7_2:69237935-69237954 | Msa1072240:CDS | 45.0% | |
| TCTTAGTGGTCAACAAGGCA+TGG | + | chr7_2:69237940-69237959 | Msa1072240:CDS | 45.0% | |
| AACGCGGAACTGTCAAATCA+AGG | - | chr7_2:69238849-69238868 | None:intergenic | 45.0% | |
| !!! | ATTTTATTTTATTTTTTATG+AGG | + | chr7_2:69238409-69238428 | Msa1072240:intron | 5.0% |
| !! | TTGGGTTGGAGTGTTGTTGG+GGG | - | chr7_2:69237510-69237529 | None:intergenic | 50.0% |
| !! | GTTGGGTTGGAGTGTTGTTG+GGG | - | chr7_2:69237511-69237530 | None:intergenic | 50.0% |
| TTCTCGGAACCATGTTGGGT+TGG | - | chr7_2:69237524-69237543 | None:intergenic | 50.0% | |
| CCGAGAAAACTGAACCGGTT+AGG | + | chr7_2:69237537-69237556 | Msa1072240:CDS | 50.0% | |
| GTCCATCTTCAACAGTGGCA+TGG | + | chr7_2:69237601-69237620 | Msa1072240:CDS | 50.0% | |
| CACCATGCCACTGTTGAAGA+TGG | - | chr7_2:69237606-69237625 | None:intergenic | 50.0% | |
| !! | TCTACTGGTTCCAAAACCGC+CGG | + | chr7_2:69237702-69237721 | Msa1072240:CDS | 50.0% |
| GGTTCAAACCAACCCAACCA+TGG | + | chr7_2:69237850-69237869 | Msa1072240:CDS | 50.0% | |
| GGAGGAACCACCAAAAACCA+TGG | - | chr7_2:69237870-69237889 | None:intergenic | 50.0% | |
| AGTGGTCAACAAGGCATGGA+TGG | + | chr7_2:69237944-69237963 | Msa1072240:CDS | 50.0% | |
| ! | AGAGGAGGGCACAAAAGTGA+TGG | - | chr7_2:69238028-69238047 | None:intergenic | 50.0% |
| GAAGGAACAGAAACTGCAGC+CGG | - | chr7_2:69238923-69238942 | None:intergenic | 50.0% | |
| ! | CTGATTGTTGGTGCCCTCTT+TGG | + | chr7_2:69239056-69239075 | Msa1072240:intron | 50.0% |
| !! | GGAGGTGCTAGTACTGTAAC+AGG | + | chr7_2:69239799-69239818 | Msa1072240:CDS | 50.0% |
| !! | TGGGTTGGAGTGTTGTTGGG+GGG | - | chr7_2:69237509-69237528 | None:intergenic | 55.0% |
| CTGAACCGGTTAGGTCAAGG+TGG | + | chr7_2:69237546-69237565 | Msa1072240:CDS | 55.0% | |
| GGTGTCCACCTTGACCTAAC+CGG | - | chr7_2:69237554-69237573 | None:intergenic | 55.0% | |
| ! | GAGATCTAGACCGGCGGTTT+TGG | - | chr7_2:69237715-69237734 | None:intergenic | 55.0% |
| TGTAGGAACTGGCACACCAG+AGG | - | chr7_2:69239923-69239942 | None:intergenic | 55.0% | |
| !! | GGGTTGGAGTGTTGTTGGGG+GGG | - | chr7_2:69237508-69237527 | None:intergenic | 60.0% |
| CCTGCTGCATCTGGCGTTGT+CGG | - | chr7_2:69237742-69237761 | None:intergenic | 60.0% | |
| CAAGTGTGGCCTGCTGCATC+TGG | - | chr7_2:69237751-69237770 | None:intergenic | 60.0% | |
| GTCGGCGGCGAGATCTAGAC+CGG | - | chr7_2:69237724-69237743 | None:intergenic | 65.0% | |
| GCTGCATCTGGCGTTGTCGG+CGG | - | chr7_2:69237739-69237758 | None:intergenic | 65.0% | |
| CCGACAACGCCAGATGCAGC+AGG | + | chr7_2:69237739-69237758 | Msa1072240:CDS | 65.0% | |
| GGCGGCGAGATCTAGACCGG+CGG | - | chr7_2:69237721-69237740 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 69237482 | 69239996 | 69237482 | ID=Msa1072240;Name=Msa1072240 |
| chr7_2 | mRNA | 69237482 | 69239996 | 69237482 | ID=Msa1072240-mRNA-1;Parent=Msa1072240;Name=Msa1072240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.33|0|1|0.33|0.25|4|0|259 |
| chr7_2 | exon | 69237482 | 69237723 | 69237482 | ID=Msa1072240-mRNA-1:exon:15341;Parent=Msa1072240-mRNA-1 |
| chr7_2 | exon | 69237730 | 69237965 | 69237730 | ID=Msa1072240-mRNA-1:exon:15342;Parent=Msa1072240-mRNA-1 |
| chr7_2 | exon | 69237978 | 69238073 | 69237978 | ID=Msa1072240-mRNA-1:exon:15343;Parent=Msa1072240-mRNA-1 |
| chr7_2 | exon | 69239794 | 69239996 | 69239794 | ID=Msa1072240-mRNA-1:exon:15344;Parent=Msa1072240-mRNA-1 |
| chr7_2 | CDS | 69237482 | 69237723 | 69237482 | ID=Msa1072240-mRNA-1:cds;Parent=Msa1072240-mRNA-1 |
| chr7_2 | CDS | 69237730 | 69237965 | 69237730 | ID=Msa1072240-mRNA-1:cds;Parent=Msa1072240-mRNA-1 |
| chr7_2 | CDS | 69237978 | 69238073 | 69237978 | ID=Msa1072240-mRNA-1:cds;Parent=Msa1072240-mRNA-1 |
| chr7_2 | CDS | 69239794 | 69239996 | 69239794 | ID=Msa1072240-mRNA-1:cds;Parent=Msa1072240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
