Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118240 | XP_003624740.1 | 98.120 | 266 | 5 | 0 | 4 | 269 | 1 | 266 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118240 | sp|Q6X7J3|WOX11_ARATH | 50.916 | 273 | 100 | 8 | 15 | 269 | 8 | 264 | 1.26e-61 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118240 | B7FL74 | 98.120 | 266 | 5 | 0 | 4 | 269 | 1 | 266 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1118240 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1072240 | Msa1118240 | 0.903248 | 4.222113e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118240 | MtrunA17_Chr7g0254251 | 98.120 | 266 | 5 | 0 | 4 | 269 | 1 | 266 | 0.0 | 543 |
| Msa1118240 | MtrunA17_Chr6g0460691 | 49.474 | 285 | 92 | 7 | 23 | 269 | 24 | 294 | 1.43e-59 | 191 |
| Msa1118240 | MtrunA17_Chr7g0223471 | 59.524 | 84 | 34 | 0 | 21 | 104 | 37 | 120 | 7.07e-30 | 116 |
| Msa1118240 | MtrunA17_Chr2g0283141 | 62.500 | 80 | 29 | 1 | 16 | 94 | 39 | 118 | 8.12e-28 | 111 |
| Msa1118240 | MtrunA17_Chr2g0283141 | 42.424 | 66 | 38 | 0 | 204 | 269 | 341 | 406 | 2.04e-13 | 70.1 |
| Msa1118240 | MtrunA17_Chr4g0043891 | 40.244 | 82 | 47 | 1 | 30 | 109 | 7 | 88 | 5.38e-16 | 75.9 |
| Msa1118240 | MtrunA17_Chr8g0392991 | 44.595 | 74 | 40 | 1 | 28 | 100 | 93 | 166 | 8.97e-15 | 73.6 |
| Msa1118240 | MtrunA17_Chr1g0212511 | 27.513 | 189 | 118 | 4 | 29 | 215 | 83 | 254 | 2.16e-14 | 71.6 |
| Msa1118240 | MtrunA17_Chr4g0031341 | 27.737 | 137 | 98 | 1 | 31 | 166 | 25 | 161 | 5.03e-14 | 70.5 |
| Msa1118240 | MtrunA17_Chr3g0144021 | 47.619 | 63 | 33 | 0 | 29 | 91 | 80 | 142 | 1.43e-13 | 68.2 |
| Msa1118240 | MtrunA17_Chr5g0405351 | 30.719 | 153 | 93 | 4 | 30 | 175 | 29 | 175 | 2.56e-12 | 65.9 |
| Msa1118240 | MtrunA17_Chr7g0238431 | 40.299 | 67 | 40 | 0 | 27 | 93 | 4 | 70 | 3.24e-12 | 64.3 |
| Msa1118240 | MtrunA17_Chr5g0436661 | 33.333 | 87 | 58 | 0 | 8 | 94 | 10 | 96 | 4.61e-12 | 63.5 |
| Msa1118240 | MtrunA17_Chr4g0046251 | 44.444 | 63 | 35 | 0 | 207 | 269 | 23 | 85 | 4.73e-12 | 60.8 |
| Msa1118240 | MtrunA17_Chr1g0153171 | 38.636 | 88 | 51 | 1 | 6 | 93 | 68 | 152 | 1.18e-11 | 63.2 |
| Msa1118240 | MtrunA17_Chr7g0222981 | 43.077 | 65 | 37 | 0 | 28 | 92 | 65 | 129 | 1.75e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118240 | AT3G03660.1 | 50.916 | 273 | 100 | 8 | 15 | 269 | 8 | 264 | 1.28e-62 | 199 |
| Msa1118240 | AT3G03660.4 | 49.822 | 281 | 107 | 8 | 8 | 270 | 1 | 265 | 1.93e-62 | 199 |
| Msa1118240 | AT3G03660.2 | 48.000 | 300 | 97 | 9 | 15 | 269 | 8 | 293 | 2.13e-59 | 191 |
| Msa1118240 | AT3G03660.3 | 46.753 | 308 | 105 | 9 | 8 | 270 | 1 | 294 | 4.35e-59 | 191 |
| Msa1118240 | AT5G17810.3 | 46.617 | 266 | 110 | 8 | 22 | 269 | 12 | 263 | 2.49e-54 | 177 |
| Msa1118240 | AT5G17810.1 | 46.617 | 266 | 111 | 8 | 22 | 269 | 12 | 264 | 2.86e-54 | 177 |
| Msa1118240 | AT5G17810.2 | 46.617 | 266 | 111 | 8 | 22 | 269 | 12 | 264 | 2.86e-54 | 177 |
| Msa1118240 | AT5G45980.1 | 31.164 | 292 | 159 | 10 | 15 | 269 | 39 | 325 | 1.50e-34 | 127 |
| Msa1118240 | AT2G33880.1 | 64.286 | 70 | 25 | 0 | 23 | 92 | 47 | 116 | 3.73e-26 | 106 |
| Msa1118240 | AT2G33880.1 | 42.857 | 56 | 32 | 0 | 214 | 269 | 323 | 378 | 2.15e-11 | 63.9 |
| Msa1118240 | AT2G33880.2 | 64.286 | 70 | 25 | 0 | 23 | 92 | 47 | 116 | 4.61e-26 | 106 |
| Msa1118240 | AT2G33880.2 | 45.614 | 57 | 31 | 0 | 214 | 270 | 323 | 379 | 4.78e-12 | 66.2 |
| Msa1118240 | AT4G35550.1 | 46.875 | 64 | 34 | 0 | 28 | 91 | 96 | 159 | 3.22e-14 | 71.6 |
| Msa1118240 | AT1G20700.2 | 42.857 | 70 | 40 | 0 | 28 | 97 | 30 | 99 | 3.10e-13 | 66.2 |
| Msa1118240 | AT1G20700.1 | 42.857 | 70 | 40 | 0 | 28 | 97 | 92 | 161 | 6.88e-13 | 66.6 |
| Msa1118240 | AT1G20700.3 | 42.857 | 70 | 40 | 0 | 28 | 97 | 92 | 161 | 7.42e-13 | 66.6 |
| Msa1118240 | AT5G59340.1 | 36.111 | 72 | 46 | 0 | 30 | 101 | 13 | 84 | 7.51e-13 | 67.4 |
| Msa1118240 | AT1G46480.2 | 38.202 | 89 | 46 | 2 | 7 | 93 | 71 | 152 | 1.24e-12 | 65.5 |
| Msa1118240 | AT3G18010.1 | 40.580 | 69 | 40 | 1 | 28 | 95 | 73 | 141 | 1.45e-12 | 67.4 |
| Msa1118240 | AT2G28610.1 | 42.647 | 68 | 38 | 1 | 27 | 93 | 3 | 70 | 5.76e-12 | 64.7 |
| Msa1118240 | AT1G46480.1 | 38.202 | 89 | 46 | 2 | 7 | 93 | 71 | 152 | 9.34e-12 | 64.3 |
| Msa1118240 | AT2G17950.1 | 42.188 | 64 | 36 | 1 | 30 | 92 | 37 | 100 | 1.18e-11 | 64.3 |
| Msa1118240 | AT5G05770.1 | 33.784 | 74 | 49 | 0 | 31 | 104 | 29 | 102 | 1.92e-11 | 60.8 |
| Msa1118240 | AT3G11260.1 | 39.062 | 64 | 39 | 0 | 31 | 94 | 24 | 87 | 2.01e-11 | 62.0 |
Find 74 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAGTGATAGTTGAAATT+AGG | 0.234117 | 7_3:-66835360 | None:intergenic |
| TCTTGTTTAAATGATTCTTC+TGG | 0.294809 | 7_3:+66835198 | Msa1118240:CDS |
| TGTTGGGTTGGAGTGTTGTT+GGG | 0.318471 | 7_3:-66834817 | None:intergenic |
| AGAAAACTTCTTGAGAAATT+CGG | 0.326558 | 7_3:+66834964 | Msa1118240:CDS |
| GTTGGGTTGGAGTGTTGTTG+GGG | 0.328214 | 7_3:-66834816 | None:intergenic |
| ATGAGAATTTGTTCTGGTTT+TGG | 0.333304 | 7_3:-66834880 | None:intergenic |
| GAGATCTAGACCGGCGGTTT+TGG | 0.333606 | 7_3:-66835020 | None:intergenic |
| CAAGTGTGGCCTGCTGCATC+TGG | 0.348372 | 7_3:-66835056 | None:intergenic |
| CTAGACATTAAAACAGTGTT+TGG | 0.355662 | 7_3:+66837149 | Msa1118240:CDS |
| ATGTTGGGTTGGAGTGTTGT+TGG | 0.365481 | 7_3:-66834818 | None:intergenic |
| CCATGGTGAAAGCTACTTTC+TGG | 0.370838 | 7_3:+66837250 | Msa1118240:CDS |
| GGGTTGGAGTGTTGTTGGGG+GGG | 0.381125 | 7_3:-66834813 | None:intergenic |
| TTGGGTTGGAGTGTTGTTGG+GGG | 0.394607 | 7_3:-66834815 | None:intergenic |
| CCATGTTCATTTGTGGGAAC+TGG | 0.410202 | 7_3:-66837206 | None:intergenic |
| TCATGTGGTGGTGTTCTTAG+TGG | 0.413935 | 7_3:+66835234 | Msa1118240:CDS |
| CCTGCTGCATCTGGCGTTGT+CGG | 0.413984 | 7_3:-66835047 | None:intergenic |
| TCAAGTATGAGAATTTGTTC+TGG | 0.415342 | 7_3:-66834886 | None:intergenic |
| CCGACAACGCCAGATGCAGC+AGG | 0.426272 | 7_3:+66835047 | Msa1118240:CDS |
| GGTGTCCACCTTGACCTAAC+CGG | 0.426373 | 7_3:-66834859 | None:intergenic |
| TGGGTTGGAGTGTTGTTGGG+GGG | 0.427678 | 7_3:-66834814 | None:intergenic |
| CAAGATGCCATGTTCATTTG+TGG | 0.439026 | 7_3:-66837213 | None:intergenic |
| GAAAGCTACTTTCTGGTACT+TGG | 0.440428 | 7_3:+66837257 | Msa1118240:CDS |
| TGGCAACAGTGTTTATCAAT+GGG | 0.442136 | 7_3:+66837099 | Msa1118240:CDS |
| AAGTGCAATTCCTTGTGATA+TGG | 0.444028 | 7_3:+66835137 | Msa1118240:CDS |
| GGAGGTGCTAGTAATATAAC+AGG | 0.444664 | 7_3:+66837074 | Msa1118240:CDS |
| TTGGCAACAGTGTTTATCAA+TGG | 0.459800 | 7_3:+66837098 | Msa1118240:CDS |
| CCGAGAAAACTGAACCGGTT+AGG | 0.473633 | 7_3:+66834845 | Msa1118240:CDS |
| AAGATGCCATGTTCATTTGT+GGG | 0.479061 | 7_3:-66837212 | None:intergenic |
| TTATTTCTTCAATAGTGCAT+TGG | 0.495864 | 7_3:+66834766 | None:intergenic |
| TAGTTGAAATTAGGAGAAAG+AGG | 0.501074 | 7_3:-66835351 | None:intergenic |
| CACCATGCCACTGTTGAAGA+TGG | 0.505097 | 7_3:-66834911 | None:intergenic |
| GGTTCTTCCTCTTCATCATG+TGG | 0.507710 | 7_3:+66835219 | Msa1118240:CDS |
| GTGATGTTAGTTCATTCCTC+TGG | 0.509716 | 7_3:+66837179 | Msa1118240:CDS |
| CCTAATTTCAACTATCACTC+TGG | 0.510567 | 7_3:+66835360 | Msa1118240:CDS |
| TGCTAGTAATATAACAGGAT+TGG | 0.515623 | 7_3:+66837079 | Msa1118240:CDS |
| TTCTCGGAACCATGTTGGGT+TGG | 0.525597 | 7_3:-66834829 | None:intergenic |
| TGGTTCCGAGAAAACTGAAC+CGG | 0.529515 | 7_3:+66834840 | Msa1118240:CDS |
| GTGATGCTAACGTCTTCTAC+TGG | 0.530664 | 7_3:+66834995 | Msa1118240:CDS |
| ATTGATTTGAAAATGTATGA+TGG | 0.540730 | 7_3:-66837286 | None:intergenic |
| AGTGGTCAACAAGGCATGGA+TGG | 0.541797 | 7_3:+66835252 | Msa1118240:CDS |
| TGGTATTATTAAGGATATGG+AGG | 0.551703 | 7_3:+66837056 | Msa1118240:intron |
| TGAAATTAGGAGAAAGAGGA+GGG | 0.553578 | 7_3:-66835347 | None:intergenic |
| CTTGAGAAATTCGGCAACGT+CGG | 0.555714 | 7_3:+66834973 | Msa1118240:CDS |
| ATTTCTTTGCTGATCAAGTG+TGG | 0.555910 | 7_3:-66835070 | None:intergenic |
| AACACCACCACATGATGAAG+AGG | 0.558375 | 7_3:-66835226 | None:intergenic |
| TTGAAATTAGGAGAAAGAGG+AGG | 0.567678 | 7_3:-66835348 | None:intergenic |
| ATTGCAACAGAAATTCAAGC+GGG | 0.569187 | 7_3:+66837122 | Msa1118240:CDS |
| TCTTCAATAGTGCATTGGAA+TGG | 0.569371 | 7_3:+66834771 | None:intergenic |
| GCTGCATCTGGCGTTGTCGG+CGG | 0.572272 | 7_3:-66835044 | None:intergenic |
| TCTTCCTCTTCATCATGTGG+TGG | 0.579085 | 7_3:+66835222 | Msa1118240:CDS |
| AGAAGAATCATTTAAACAAG+AGG | 0.579493 | 7_3:-66835196 | None:intergenic |
| GTCGGCGGCGAGATCTAGAC+CGG | 0.586191 | 7_3:-66835029 | None:intergenic |
| CCAGTTCCCACAAATGAACA+TGG | 0.590552 | 7_3:+66837206 | Msa1118240:CDS |
| TGATCAGCAAAGAAATCAGA+TGG | 0.591537 | 7_3:+66835077 | Msa1118240:CDS |
| TCTTAGTGGTCAACAAGGCA+TGG | 0.594370 | 7_3:+66835248 | Msa1118240:CDS |
| AGAATCATTTAAACAAGAGG+AGG | 0.602089 | 7_3:-66835193 | None:intergenic |
| AGAGGAGGGCACAAAAGTGA+TGG | 0.605244 | 7_3:-66835333 | None:intergenic |
| AAACTGAACCGGTTAGGTCA+AGG | 0.615654 | 7_3:+66834851 | Msa1118240:CDS |
| AACAACACTCCAACCCAACA+TGG | 0.616195 | 7_3:+66834820 | Msa1118240:CDS |
| GTCCATCTTCAACAGTGGCA+TGG | 0.623516 | 7_3:+66834909 | Msa1118240:CDS |
| TCTACTGGTTCCAAAACCGC+CGG | 0.624539 | 7_3:+66835010 | Msa1118240:CDS |
| CTTGAGTCCATCTTCAACAG+TGG | 0.626929 | 7_3:+66834904 | Msa1118240:CDS |
| GGTTCAAACCAACCCAACCA+TGG | 0.628192 | 7_3:+66835158 | Msa1118240:CDS |
| CCTCAGCAAGTTGTTAACGA+TGG | 0.634528 | 7_3:+66835111 | Msa1118240:CDS |
| CCATCGTTAACAACTTGCTG+AGG | 0.647740 | 7_3:-66835111 | None:intergenic |
| TGTGGGAACTGGCACACCAG+AGG | 0.654766 | 7_3:-66837195 | None:intergenic |
| TTGGTTTGAACCATATCACA+AGG | 0.660599 | 7_3:-66835147 | None:intergenic |
| GGTGTTCTTAGTGGTCAACA+AGG | 0.660710 | 7_3:+66835243 | Msa1118240:CDS |
| GATTGCAACAGAAATTCAAG+CGG | 0.666279 | 7_3:+66837121 | Msa1118240:CDS |
| CTGAACCGGTTAGGTCAAGG+TGG | 0.696695 | 7_3:+66834854 | Msa1118240:CDS |
| GGCGGCGAGATCTAGACCGG+CGG | 0.697708 | 7_3:-66835026 | None:intergenic |
| TTGATTCAGAGCTTGCACCA+TGG | 0.703765 | 7_3:+66837233 | Msa1118240:CDS |
| CCAGAAAGTAGCTTTCACCA+TGG | 0.713476 | 7_3:-66837250 | None:intergenic |
| TTGCAACAGAAATTCAAGCG+GGG | 0.718011 | 7_3:+66837123 | Msa1118240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATAATTTTATATAAATGT+TGG | - | chr7_3:66836408-66836427 | None:intergenic | 10.0% |
| !!! | ATGTTCTAATAATTTTATTT+TGG | + | chr7_3:66837036-66837055 | Msa1118240:intron | 10.0% |
| !!! | ATTTTATTTTGGTATTATTA+AGG | + | chr7_3:66837047-66837066 | Msa1118240:intron | 10.0% |
| !!! | AAAATTCATTTTAAAATCCA+TGG | + | chr7_3:66835420-66835439 | Msa1118240:intron | 15.0% |
| !! | GAATAATACAAAATTATTTG+TGG | - | chr7_3:66835502-66835521 | None:intergenic | 15.0% |
| !!! | AGTTTGAAATTTATCAAAAT+TGG | - | chr7_3:66835612-66835631 | None:intergenic | 15.0% |
| !! | TTAAAAAAAGTTCATGTTTA+TGG | + | chr7_3:66836071-66836090 | Msa1118240:intron | 15.0% |
| !!! | GAACTTGTAATTTTTTTTAA+CGG | - | chr7_3:66836438-66836457 | None:intergenic | 15.0% |
| !!! | TTGTAAATTTTCAATTAAGT+TGG | - | chr7_3:66836514-66836533 | None:intergenic | 15.0% |
| !!! | TATATAGCAGATTTTATTTT+GGG | - | chr7_3:66836585-66836604 | None:intergenic | 15.0% |
| !!! | ATATATAGCAGATTTTATTT+TGG | - | chr7_3:66836586-66836605 | None:intergenic | 15.0% |
| !!! | TTTTGATAGTTTCTTCTTTT+GGG | - | chr7_3:66834942-66834961 | None:intergenic | 20.0% |
| !!! | ATTTTGATAGTTTCTTCTTT+TGG | - | chr7_3:66834943-66834962 | None:intergenic | 20.0% |
| !!! | TTTGTGATTTTAGTATGAAT+TGG | - | chr7_3:66835452-66835471 | None:intergenic | 20.0% |
| !! | AAATTTATCAAAATTGGACT+AGG | - | chr7_3:66835606-66835625 | None:intergenic | 20.0% |
| !! | ATCAGAATTAACAATTTCAT+TGG | + | chr7_3:66835751-66835770 | Msa1118240:intron | 20.0% |
| !! | TTTGATATATGTAACTTTCA+TGG | - | chr7_3:66835784-66835803 | None:intergenic | 20.0% |
| !! | AGGAAATATATATGTTGAAT+AGG | - | chr7_3:66835924-66835943 | None:intergenic | 20.0% |
| !! | AAAATTTGTAACATCAGATT+TGG | - | chr7_3:66835957-66835976 | None:intergenic | 20.0% |
| !! | AAAAAAGTGAGAGAATAAAA+AGG | - | chr7_3:66836243-66836262 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAAATCTAGGGTT+TGG | - | chr7_3:66836310-66836329 | None:intergenic | 20.0% |
| !!! | TAAATTTTCAATTAAGTTGG+TGG | - | chr7_3:66836511-66836530 | None:intergenic | 20.0% |
| !!! | ATATAGCAGATTTTATTTTG+GGG | - | chr7_3:66836584-66836603 | None:intergenic | 20.0% |
| !! | CAAATTTGATTAACAATTCT+TGG | - | chr7_3:66836704-66836723 | None:intergenic | 20.0% |
| !! | CAAGAATTGTTAATCAAATT+TGG | + | chr7_3:66836702-66836721 | Msa1118240:intron | 20.0% |
| !!! | ATCACTTTAACTTAATTGTT+TGG | + | chr7_3:66836762-66836781 | Msa1118240:intron | 20.0% |
| !! | TGTACAGATATGAAAATTAT+AGG | - | chr7_3:66836812-66836831 | None:intergenic | 20.0% |
| !!! | TTTTGGTATTATTAAGGATA+TGG | + | chr7_3:66837053-66837072 | Msa1118240:intron | 20.0% |
| !!! | ATTGATTTGAAAATGTATGA+TGG | - | chr7_3:66837289-66837308 | None:intergenic | 20.0% |
| !!! | TTTGATAGTTTCTTCTTTTG+GGG | - | chr7_3:66834941-66834960 | None:intergenic | 25.0% |
| ! | AGAAAACTTCTTGAGAAATT+CGG | + | chr7_3:66834964-66834983 | Msa1118240:CDS | 25.0% |
| ! | AGAAGAATCATTTAAACAAG+AGG | - | chr7_3:66835199-66835218 | None:intergenic | 25.0% |
| !! | TCTTGTTTAAATGATTCTTC+TGG | + | chr7_3:66835198-66835217 | Msa1118240:CDS | 25.0% |
| !! | TTTTCAGTTTCTTCTCAAAT+GGG | + | chr7_3:66835279-66835298 | Msa1118240:CDS | 25.0% |
| !! | ATTAGAGAAAGCATATACAA+AGG | + | chr7_3:66835722-66835741 | Msa1118240:intron | 25.0% |
| !!! | TTTTTTATGAGATTTGAGCA+TGG | + | chr7_3:66835888-66835907 | Msa1118240:intron | 25.0% |
| !!! | CTTTTTTTAAACTAAGTGCA+TGG | - | chr7_3:66836061-66836080 | None:intergenic | 25.0% |
| ! | TGTTTATGGAATGATTGATT+AGG | + | chr7_3:66836085-66836104 | Msa1118240:intron | 25.0% |
| !!! | ATGAGAATTTGTTCTGGTTT+TGG | - | chr7_3:66834883-66834902 | None:intergenic | 30.0% |
| ! | TCAAGTATGAGAATTTGTTC+TGG | - | chr7_3:66834889-66834908 | None:intergenic | 30.0% |
| !! | TTGATAGTTTCTTCTTTTGG+GGG | - | chr7_3:66834940-66834959 | None:intergenic | 30.0% |
| AGAATCATTTAAACAAGAGG+AGG | - | chr7_3:66835196-66835215 | None:intergenic | 30.0% | |
| ! | GTTTTCAGTTTCTTCTCAAA+TGG | + | chr7_3:66835278-66835297 | Msa1118240:CDS | 30.0% |
| TAGTTGAAATTAGGAGAAAG+AGG | - | chr7_3:66835354-66835373 | None:intergenic | 30.0% | |
| ! | TAGGCTTTGATGTAATATGT+TGG | - | chr7_3:66835587-66835606 | None:intergenic | 30.0% |
| ! | TCAGATTTGGAATTTATGCA+AGG | - | chr7_3:66835944-66835963 | None:intergenic | 30.0% |
| CCAATACTCATTAATAACAC+TGG | - | chr7_3:66835995-66836014 | None:intergenic | 30.0% | |
| ! | CCAGTGTTATTAATGAGTAT+TGG | + | chr7_3:66835992-66836011 | Msa1118240:intron | 30.0% |
| ! | TTTTAAACTAAGTGCATGGA+TGG | - | chr7_3:66836057-66836076 | None:intergenic | 30.0% |
| AAGTGAGAGAATAAAAAGGA+AGG | - | chr7_3:66836239-66836258 | None:intergenic | 30.0% | |
| AAATCATCTCATCTGATTGT+TGG | + | chr7_3:66836340-66836359 | Msa1118240:intron | 30.0% | |
| TGGTGAATAATTTCCAAAGA+GGG | - | chr7_3:66836368-66836387 | None:intergenic | 30.0% | |
| ATGGTGAATAATTTCCAAAG+AGG | - | chr7_3:66836369-66836388 | None:intergenic | 30.0% | |
| TGGTAAAAACTAGTGATGTA+TGG | - | chr7_3:66836388-66836407 | None:intergenic | 30.0% | |
| GTTAAAAAAAAATGTCGTCG+CGG | - | chr7_3:66836614-66836633 | None:intergenic | 30.0% | |
| AATTGTTTGGTTATCTACGA+TGG | + | chr7_3:66836775-66836794 | Msa1118240:intron | 30.0% | |
| ATTGTTTGGTTATCTACGAT+GGG | + | chr7_3:66836776-66836795 | Msa1118240:intron | 30.0% | |
| ! | TTGACTTCTTAATGATAACG+TGG | + | chr7_3:66836833-66836852 | Msa1118240:intron | 30.0% |
| GTGATTGTGATATGAAATTC+AGG | + | chr7_3:66836920-66836939 | Msa1118240:intron | 30.0% | |
| TTGTATTTGACCAATGTGTA+TGG | + | chr7_3:66837011-66837030 | Msa1118240:intron | 30.0% | |
| TGGTATTATTAAGGATATGG+AGG | + | chr7_3:66837056-66837075 | Msa1118240:intron | 30.0% | |
| TGCTAGTAATATAACAGGAT+TGG | + | chr7_3:66837079-66837098 | Msa1118240:CDS | 30.0% | |
| !!! | AACACTGTTTTAATGTCTAG+TGG | - | chr7_3:66837149-66837168 | None:intergenic | 30.0% |
| CTAGACATTAAAACAGTGTT+TGG | + | chr7_3:66837149-66837168 | Msa1118240:CDS | 30.0% | |
| ATTTCTTTGCTGATCAAGTG+TGG | - | chr7_3:66835073-66835092 | None:intergenic | 35.0% | |
| TGATCAGCAAAGAAATCAGA+TGG | + | chr7_3:66835077-66835096 | Msa1118240:CDS | 35.0% | |
| AAGTGCAATTCCTTGTGATA+TGG | + | chr7_3:66835137-66835156 | Msa1118240:CDS | 35.0% | |
| ! | TTGGTTTGAACCATATCACA+AGG | - | chr7_3:66835150-66835169 | None:intergenic | 35.0% |
| !! | TCTTCTCAAATGGGTTTTCT+TGG | + | chr7_3:66835288-66835307 | Msa1118240:CDS | 35.0% |
| TGAAATTAGGAGAAAGAGGA+GGG | - | chr7_3:66835350-66835369 | None:intergenic | 35.0% | |
| TTGAAATTAGGAGAAAGAGG+AGG | - | chr7_3:66835351-66835370 | None:intergenic | 35.0% | |
| CCAGAGTGATAGTTGAAATT+AGG | - | chr7_3:66835363-66835382 | None:intergenic | 35.0% | |
| CCTAATTTCAACTATCACTC+TGG | + | chr7_3:66835360-66835379 | Msa1118240:CDS | 35.0% | |
| TCAACTATCACTCTGGTAAT+TGG | + | chr7_3:66835367-66835386 | Msa1118240:intron | 35.0% | |
| CCATTCGCATGTGTAAAATT+TGG | - | chr7_3:66835832-66835851 | None:intergenic | 35.0% | |
| ! | CCAAATTTTACACATGCGAA+TGG | + | chr7_3:66835829-66835848 | Msa1118240:intron | 35.0% |
| GGAATGATTGATTAGGTTAC+AGG | + | chr7_3:66836092-66836111 | Msa1118240:intron | 35.0% | |
| TGATTGATTAGGTTACAGGA+TGG | + | chr7_3:66836096-66836115 | Msa1118240:intron | 35.0% | |
| GATTGATTAGGTTACAGGAT+GGG | + | chr7_3:66836097-66836116 | Msa1118240:intron | 35.0% | |
| TTCATGCAACAATTCAAACG+CGG | - | chr7_3:66836163-66836182 | None:intergenic | 35.0% | |
| TGCATGAAAGTTGTTCTTTC+CGG | + | chr7_3:66836175-66836194 | Msa1118240:intron | 35.0% | |
| ! | AAGTAGCGTTCATGTTTTTC+CGG | - | chr7_3:66836197-66836216 | None:intergenic | 35.0% |
| ! | AAAACATGAACGCTACTTTC+CGG | + | chr7_3:66836199-66836218 | Msa1118240:intron | 35.0% |
| !!! | GGATCTATTGATTTTGCACA+AGG | - | chr7_3:66836490-66836509 | None:intergenic | 35.0% |
| ! | TTGGGGTAAAGTCTGAAATT+TGG | - | chr7_3:66836567-66836586 | None:intergenic | 35.0% |
| TAGAACATCACCATACACAT+TGG | - | chr7_3:66837024-66837043 | None:intergenic | 35.0% | |
| TTGGCAACAGTGTTTATCAA+TGG | + | chr7_3:66837098-66837117 | Msa1118240:CDS | 35.0% | |
| TGGCAACAGTGTTTATCAAT+GGG | + | chr7_3:66837099-66837118 | Msa1118240:CDS | 35.0% | |
| GATTGCAACAGAAATTCAAG+CGG | + | chr7_3:66837121-66837140 | Msa1118240:CDS | 35.0% | |
| ATTGCAACAGAAATTCAAGC+GGG | + | chr7_3:66837122-66837141 | Msa1118240:CDS | 35.0% | |
| AAGATGCCATGTTCATTTGT+GGG | - | chr7_3:66837215-66837234 | None:intergenic | 35.0% | |
| ! | AGTTTTCTCGGAACCATGTT+GGG | - | chr7_3:66834836-66834855 | None:intergenic | 40.0% |
| AACCACCAAAAACCATGGTT+GGG | - | chr7_3:66835173-66835192 | None:intergenic | 40.0% | |
| AGGATGGGTACAGAATAAAG+TGG | + | chr7_3:66836112-66836131 | Msa1118240:intron | 40.0% | |
| GGATGGGTACAGAATAAAGT+GGG | + | chr7_3:66836113-66836132 | Msa1118240:intron | 40.0% | |
| !! | TTTTCAAGCACGAACGTTTC+AGG | - | chr7_3:66836733-66836752 | None:intergenic | 40.0% |
| !! | GTTATCTACGATGGGTTGAA+AGG | + | chr7_3:66836784-66836803 | Msa1118240:intron | 40.0% |
| !! | GGAGGTGCTAGTAATATAAC+AGG | + | chr7_3:66837074-66837093 | Msa1118240:CDS | 40.0% |
| TTGCAACAGAAATTCAAGCG+GGG | + | chr7_3:66837123-66837142 | Msa1118240:CDS | 40.0% | |
| GTGATGTTAGTTCATTCCTC+TGG | + | chr7_3:66837179-66837198 | Msa1118240:CDS | 40.0% | |
| CAAGATGCCATGTTCATTTG+TGG | - | chr7_3:66837216-66837235 | None:intergenic | 40.0% | |
| ! | GAAAGCTACTTTCTGGTACT+TGG | + | chr7_3:66837257-66837276 | Msa1118240:CDS | 40.0% |
| !! | TGTTGGGTTGGAGTGTTGTT+GGG | - | chr7_3:66834820-66834839 | None:intergenic | 45.0% |
| !! | ATGTTGGGTTGGAGTGTTGT+TGG | - | chr7_3:66834821-66834840 | None:intergenic | 45.0% |
| AACAACACTCCAACCCAACA+TGG | + | chr7_3:66834820-66834839 | Msa1118240:CDS | 45.0% | |
| ! | CAGTTTTCTCGGAACCATGT+TGG | - | chr7_3:66834837-66834856 | None:intergenic | 45.0% |
| TGGTTCCGAGAAAACTGAAC+CGG | + | chr7_3:66834840-66834859 | Msa1118240:CDS | 45.0% | |
| !! | CCTAACCGGTTCAGTTTTCT+CGG | - | chr7_3:66834848-66834867 | None:intergenic | 45.0% |
| AAACTGAACCGGTTAGGTCA+AGG | + | chr7_3:66834851-66834870 | Msa1118240:CDS | 45.0% | |
| CTTGAGTCCATCTTCAACAG+TGG | + | chr7_3:66834904-66834923 | Msa1118240:CDS | 45.0% | |
| CTTGAGAAATTCGGCAACGT+CGG | + | chr7_3:66834973-66834992 | Msa1118240:CDS | 45.0% | |
| GTGATGCTAACGTCTTCTAC+TGG | + | chr7_3:66834995-66835014 | Msa1118240:CDS | 45.0% | |
| !! | CCATCGTTAACAACTTGCTG+AGG | - | chr7_3:66835114-66835133 | None:intergenic | 45.0% |
| CCTCAGCAAGTTGTTAACGA+TGG | + | chr7_3:66835111-66835130 | Msa1118240:CDS | 45.0% | |
| ! | ACCAACCCAACCATGGTTTT+TGG | + | chr7_3:66835165-66835184 | Msa1118240:CDS | 45.0% |
| ACCAAAAACCATGGTTGGGT+TGG | - | chr7_3:66835169-66835188 | None:intergenic | 45.0% | |
| !! | AACCCAACCATGGTTTTTGG+TGG | + | chr7_3:66835168-66835187 | Msa1118240:CDS | 45.0% |
| GAACCACCAAAAACCATGGT+TGG | - | chr7_3:66835174-66835193 | None:intergenic | 45.0% | |
| GGTTCTTCCTCTTCATCATG+TGG | + | chr7_3:66835219-66835238 | Msa1118240:CDS | 45.0% | |
| TCTTCCTCTTCATCATGTGG+TGG | + | chr7_3:66835222-66835241 | Msa1118240:CDS | 45.0% | |
| AACACCACCACATGATGAAG+AGG | - | chr7_3:66835229-66835248 | None:intergenic | 45.0% | |
| ! | TCATGTGGTGGTGTTCTTAG+TGG | + | chr7_3:66835234-66835253 | Msa1118240:CDS | 45.0% |
| GGTGTTCTTAGTGGTCAACA+AGG | + | chr7_3:66835243-66835262 | Msa1118240:CDS | 45.0% | |
| TCTTAGTGGTCAACAAGGCA+TGG | + | chr7_3:66835248-66835267 | Msa1118240:CDS | 45.0% | |
| ! | GTATGAATTGGAGTGCTCCA+TGG | - | chr7_3:66835440-66835459 | None:intergenic | 45.0% |
| AACGCGGAACTGTCAAATCA+AGG | - | chr7_3:66836147-66836166 | None:intergenic | 45.0% | |
| CCATGTTCATTTGTGGGAAC+TGG | - | chr7_3:66837209-66837228 | None:intergenic | 45.0% | |
| CCAGTTCCCACAAATGAACA+TGG | + | chr7_3:66837206-66837225 | Msa1118240:CDS | 45.0% | |
| TTGATTCAGAGCTTGCACCA+TGG | + | chr7_3:66837233-66837252 | Msa1118240:CDS | 45.0% | |
| CCAGAAAGTAGCTTTCACCA+TGG | - | chr7_3:66837253-66837272 | None:intergenic | 45.0% | |
| ! | CCATGGTGAAAGCTACTTTC+TGG | + | chr7_3:66837250-66837269 | Msa1118240:CDS | 45.0% |
| !! | TAAAAAAAAAAAAAAATCTA+GGG | - | chr7_3:66836315-66836334 | None:intergenic | 5.0% |
| !! | TTAAAAAAAAAAAAAAATCT+AGG | - | chr7_3:66836316-66836335 | None:intergenic | 5.0% |
| !! | TTGGGTTGGAGTGTTGTTGG+GGG | - | chr7_3:66834818-66834837 | None:intergenic | 50.0% |
| !! | GTTGGGTTGGAGTGTTGTTG+GGG | - | chr7_3:66834819-66834838 | None:intergenic | 50.0% |
| TTCTCGGAACCATGTTGGGT+TGG | - | chr7_3:66834832-66834851 | None:intergenic | 50.0% | |
| CCGAGAAAACTGAACCGGTT+AGG | + | chr7_3:66834845-66834864 | Msa1118240:CDS | 50.0% | |
| GTCCATCTTCAACAGTGGCA+TGG | + | chr7_3:66834909-66834928 | Msa1118240:CDS | 50.0% | |
| CACCATGCCACTGTTGAAGA+TGG | - | chr7_3:66834914-66834933 | None:intergenic | 50.0% | |
| !! | TCTACTGGTTCCAAAACCGC+CGG | + | chr7_3:66835010-66835029 | Msa1118240:CDS | 50.0% |
| GGTTCAAACCAACCCAACCA+TGG | + | chr7_3:66835158-66835177 | Msa1118240:CDS | 50.0% | |
| GGAGGAACCACCAAAAACCA+TGG | - | chr7_3:66835178-66835197 | None:intergenic | 50.0% | |
| AGTGGTCAACAAGGCATGGA+TGG | + | chr7_3:66835252-66835271 | Msa1118240:CDS | 50.0% | |
| ! | AGAGGAGGGCACAAAAGTGA+TGG | - | chr7_3:66835336-66835355 | None:intergenic | 50.0% |
| GAAGGAACAGAAACTGCAGC+CGG | - | chr7_3:66836221-66836240 | None:intergenic | 50.0% | |
| ! | CTGATTGTTGGTGCCCTCTT+TGG | + | chr7_3:66836352-66836371 | Msa1118240:intron | 50.0% |
| !! | TGGGTTGGAGTGTTGTTGGG+GGG | - | chr7_3:66834817-66834836 | None:intergenic | 55.0% |
| CTGAACCGGTTAGGTCAAGG+TGG | + | chr7_3:66834854-66834873 | Msa1118240:CDS | 55.0% | |
| GGTGTCCACCTTGACCTAAC+CGG | - | chr7_3:66834862-66834881 | None:intergenic | 55.0% | |
| ! | GAGATCTAGACCGGCGGTTT+TGG | - | chr7_3:66835023-66835042 | None:intergenic | 55.0% |
| !! | GGGTTGGAGTGTTGTTGGGG+GGG | - | chr7_3:66834816-66834835 | None:intergenic | 60.0% |
| CCTGCTGCATCTGGCGTTGT+CGG | - | chr7_3:66835050-66835069 | None:intergenic | 60.0% | |
| CAAGTGTGGCCTGCTGCATC+TGG | - | chr7_3:66835059-66835078 | None:intergenic | 60.0% | |
| TGTGGGAACTGGCACACCAG+AGG | - | chr7_3:66837198-66837217 | None:intergenic | 60.0% | |
| GTCGGCGGCGAGATCTAGAC+CGG | - | chr7_3:66835032-66835051 | None:intergenic | 65.0% | |
| GCTGCATCTGGCGTTGTCGG+CGG | - | chr7_3:66835047-66835066 | None:intergenic | 65.0% | |
| CCGACAACGCCAGATGCAGC+AGG | + | chr7_3:66835047-66835066 | Msa1118240:CDS | 65.0% | |
| GGCGGCGAGATCTAGACCGG+CGG | - | chr7_3:66835029-66835048 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 66834781 | 66837322 | 66834781 | ID=Msa1118240;Name=Msa1118240 |
| chr7_3 | mRNA | 66834781 | 66837322 | 66834781 | ID=Msa1118240-mRNA-1;Parent=Msa1118240;Name=Msa1118240-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|284 |
| chr7_3 | exon | 66834781 | 66835381 | 66834781 | ID=Msa1118240-mRNA-1:exon:16265;Parent=Msa1118240-mRNA-1 |
| chr7_3 | exon | 66837069 | 66837322 | 66837069 | ID=Msa1118240-mRNA-1:exon:16266;Parent=Msa1118240-mRNA-1 |
| chr7_3 | CDS | 66834781 | 66835381 | 66834781 | ID=Msa1118240-mRNA-1:cds;Parent=Msa1118240-mRNA-1 |
| chr7_3 | CDS | 66837069 | 66837322 | 66837069 | ID=Msa1118240-mRNA-1:cds;Parent=Msa1118240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
